A B C D E F G H I J K L M N O P Q R S T U V W X Z _

O

O - Class in org.apache.ctakes.typesystem.type.syntax

Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013 XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml

O() - Constructor for class org.apache.ctakes.typesystem.type.syntax.O

Never called.

O(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.O

Internal - constructor used by generator

O(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.O

O(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.O

O_Type - Class in org.apache.ctakes.typesystem.type.syntax

Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013

O_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.O_Type

initialize variables to correspond with Cas Type and Features

ODIEVectorFileWriter - Class in org.apache.ctakes.coreference.cc

ODIEVectorFileWriter() - Constructor for class org.apache.ctakes.coreference.cc.ODIEVectorFileWriter

OffsetComparator - Class in org.apache.ctakes.core.nlp.tokenizer

Sorts Token objects by their offset.

OffsetComparator() - Constructor for class org.apache.ctakes.core.nlp.tokenizer.OffsetComparator

OINTMENT - Static variable in class org.apache.ctakes.drugner.elements.FormElement

OntologyConcept - Class in org.apache.ctakes.typesystem.type.refsem

Ontologies (e.g., SNOMED-CT) provide an expert semantic representation for concepts.

OntologyConcept() - Constructor for class org.apache.ctakes.typesystem.type.refsem.OntologyConcept

Never called.

OntologyConcept(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.OntologyConcept

Internal - constructor used by generator

OntologyConcept(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.OntologyConcept

OntologyConcept_Type - Class in org.apache.ctakes.typesystem.type.refsem

Ontologies (e.g., SNOMED-CT) provide an expert semantic representation for concepts.

OntologyConcept_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type

initialize variables to correspond with Cas Type and Features

OpenNLPPOSCollectionReader - Class in org.apache.ctakes.postagger

This collection reader reads in part-of-speech training/test data in the OpenNLP format.

OpenNLPPOSCollectionReader() - Constructor for class org.apache.ctakes.postagger.OpenNLPPOSCollectionReader

OpenNLPPOSCollectionReaderTests - Class in org.apache.ctakes.postagger.test

OpenNLPPOSCollectionReaderTests() - Constructor for class org.apache.ctakes.postagger.test.OpenNLPPOSCollectionReaderTests

options - Static variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation

OR_RELATION - Static variable in class org.apache.ctakes.dictionary.lookup.filter.PostLookupFilterGroupImpl

ORAL - Static variable in class org.apache.ctakes.drugner.elements.RouteElement

ORAL - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken

OrangeBookFilterConsumerImpl - Class in org.apache.ctakes.dictionary.lookup.ae

Implementation that takes Rxnorm dictionary lookup hits and stores only the ones that are also present in the Orange Book.

OrangeBookFilterConsumerImpl(UimaContext, Properties, int) - Constructor for class org.apache.ctakes.dictionary.lookup.ae.OrangeBookFilterConsumerImpl

OrangeBookFilterConsumerImpl(UimaContext, Properties) - Constructor for class org.apache.ctakes.dictionary.lookup.ae.OrangeBookFilterConsumerImpl

org.apache.ctakes.assertion.attributes - package org.apache.ctakes.assertion.attributes

org.apache.ctakes.assertion.attributes.features - package org.apache.ctakes.assertion.attributes.features

org.apache.ctakes.assertion.attributes.generic - package org.apache.ctakes.assertion.attributes.generic

org.apache.ctakes.assertion.attributes.history - package org.apache.ctakes.assertion.attributes.history

org.apache.ctakes.assertion.attributes.subject - package org.apache.ctakes.assertion.attributes.subject

org.apache.ctakes.assertion.cr - package org.apache.ctakes.assertion.cr

org.apache.ctakes.assertion.eval - package org.apache.ctakes.assertion.eval

org.apache.ctakes.assertion.medfacts.cleartk - package org.apache.ctakes.assertion.medfacts.cleartk

org.apache.ctakes.assertion.medfacts.cleartk.extractors - package org.apache.ctakes.assertion.medfacts.cleartk.extractors

org.apache.ctakes.assertion.medfacts.i2b2.api - package org.apache.ctakes.assertion.medfacts.i2b2.api

org.apache.ctakes.assertion.medfacts.types - package org.apache.ctakes.assertion.medfacts.types

org.apache.ctakes.assertion.pipelines - package org.apache.ctakes.assertion.pipelines

org.apache.ctakes.assertion.zoner.types - package org.apache.ctakes.assertion.zoner.types

org.apache.ctakes.chunker.ae - package org.apache.ctakes.chunker.ae

org.apache.ctakes.chunker.ae.adjuster - package org.apache.ctakes.chunker.ae.adjuster

org.apache.ctakes.clinicalpipeline.ae - package org.apache.ctakes.clinicalpipeline.ae

org.apache.ctakes.constituency.parser.ae - package org.apache.ctakes.constituency.parser.ae

org.apache.ctakes.constituency.parser.treekernel - package org.apache.ctakes.constituency.parser.treekernel

org.apache.ctakes.constituency.parser.uima.co - package org.apache.ctakes.constituency.parser.uima.co

org.apache.ctakes.constituency.parser.uima.type - package org.apache.ctakes.constituency.parser.uima.type

org.apache.ctakes.constituency.parser.util - package org.apache.ctakes.constituency.parser.util

org.apache.ctakes.contexttokenizer.ae - package org.apache.ctakes.contexttokenizer.ae

org.apache.ctakes.core.ae - package org.apache.ctakes.core.ae

org.apache.ctakes.core.cc - package org.apache.ctakes.core.cc

org.apache.ctakes.core.ci - package org.apache.ctakes.core.ci

org.apache.ctakes.core.cr - package org.apache.ctakes.core.cr

org.apache.ctakes.core.fsm.adapters - package org.apache.ctakes.core.fsm.adapters

This package contains adapters for JCas token objects comforming to the input interfaces used by the FSM project.

org.apache.ctakes.core.fsm.condition - package org.apache.ctakes.core.fsm.condition

org.apache.ctakes.core.fsm.machine - package org.apache.ctakes.core.fsm.machine

org.apache.ctakes.core.fsm.output - package org.apache.ctakes.core.fsm.output

org.apache.ctakes.core.fsm.state - package org.apache.ctakes.core.fsm.state

org.apache.ctakes.core.fsm.token - package org.apache.ctakes.core.fsm.token

org.apache.ctakes.core.fsm.token.adapter - package org.apache.ctakes.core.fsm.token.adapter

org.apache.ctakes.core.knowtator - package org.apache.ctakes.core.knowtator

org.apache.ctakes.core.nlp.tokenizer - package org.apache.ctakes.core.nlp.tokenizer

org.apache.ctakes.core.resource - package org.apache.ctakes.core.resource

org.apache.ctakes.core.sentence - package org.apache.ctakes.core.sentence

org.apache.ctakes.core.util - package org.apache.ctakes.core.util

org.apache.ctakes.coreference.ae - package org.apache.ctakes.coreference.ae

org.apache.ctakes.coreference.cc - package org.apache.ctakes.coreference.cc

org.apache.ctakes.coreference.eval.helpers - package org.apache.ctakes.coreference.eval.helpers

org.apache.ctakes.coreference.treekernel.training - package org.apache.ctakes.coreference.treekernel.training

org.apache.ctakes.coreference.type - package org.apache.ctakes.coreference.type

org.apache.ctakes.coreference.util - package org.apache.ctakes.coreference.util

org.apache.ctakes.dependency.parser.ae.util - package org.apache.ctakes.dependency.parser.ae.util

org.apache.ctakes.dependency.parser.cr - package org.apache.ctakes.dependency.parser.cr

org.apache.ctakes.dependency.parser.util - package org.apache.ctakes.dependency.parser.util

org.apache.ctakes.dictionary.assertion - package org.apache.ctakes.dictionary.assertion

org.apache.ctakes.dictionary.lookup - package org.apache.ctakes.dictionary.lookup

org.apache.ctakes.dictionary.lookup.ae - package org.apache.ctakes.dictionary.lookup.ae

org.apache.ctakes.dictionary.lookup.algorithms - package org.apache.ctakes.dictionary.lookup.algorithms

org.apache.ctakes.dictionary.lookup.filter - package org.apache.ctakes.dictionary.lookup.filter

org.apache.ctakes.dictionary.lookup.jdbc - package org.apache.ctakes.dictionary.lookup.jdbc

org.apache.ctakes.dictionary.lookup.lucene - package org.apache.ctakes.dictionary.lookup.lucene

org.apache.ctakes.dictionary.lookup.phrasebuilder - package org.apache.ctakes.dictionary.lookup.phrasebuilder

org.apache.ctakes.dictionary.lookup.strtable - package org.apache.ctakes.dictionary.lookup.strtable

org.apache.ctakes.dictionary.lookup.vo - package org.apache.ctakes.dictionary.lookup.vo

org.apache.ctakes.drugner.ae - package org.apache.ctakes.drugner.ae

org.apache.ctakes.drugner.ae.impl - package org.apache.ctakes.drugner.ae.impl

org.apache.ctakes.drugner.cc - package org.apache.ctakes.drugner.cc

org.apache.ctakes.drugner.elements - package org.apache.ctakes.drugner.elements

org.apache.ctakes.drugner.fsm.elements.conditions - package org.apache.ctakes.drugner.fsm.elements.conditions

org.apache.ctakes.drugner.fsm.machines.elements - package org.apache.ctakes.drugner.fsm.machines.elements

org.apache.ctakes.drugner.fsm.machines.util - package org.apache.ctakes.drugner.fsm.machines.util

org.apache.ctakes.drugner.fsm.output.elements - package org.apache.ctakes.drugner.fsm.output.elements

org.apache.ctakes.drugner.fsm.output.util - package org.apache.ctakes.drugner.fsm.output.util

org.apache.ctakes.drugner.fsm.states.util - package org.apache.ctakes.drugner.fsm.states.util

org.apache.ctakes.drugner.type - package org.apache.ctakes.drugner.type

org.apache.ctakes.lvg.ae - package org.apache.ctakes.lvg.ae

org.apache.ctakes.lvg.resource - package org.apache.ctakes.lvg.resource

org.apache.ctakes.necontexts - package org.apache.ctakes.necontexts

org.apache.ctakes.necontexts.negation - package org.apache.ctakes.necontexts.negation

org.apache.ctakes.necontexts.status - package org.apache.ctakes.necontexts.status

org.apache.ctakes.padtermspotter.ae - package org.apache.ctakes.padtermspotter.ae

org.apache.ctakes.padtermspotter.cc - package org.apache.ctakes.padtermspotter.cc

org.apache.ctakes.padtermspotter.cr - package org.apache.ctakes.padtermspotter.cr

org.apache.ctakes.padtermspotter.fsm.output - package org.apache.ctakes.padtermspotter.fsm.output

org.apache.ctakes.padtermspotter.fsm.pad.machine - package org.apache.ctakes.padtermspotter.fsm.pad.machine

org.apache.ctakes.padtermspotter.impl - package org.apache.ctakes.padtermspotter.impl

org.apache.ctakes.padtermspotter.type - package org.apache.ctakes.padtermspotter.type

org.apache.ctakes.padtermspotter.util - package org.apache.ctakes.padtermspotter.util

org.apache.ctakes.postagger.test - package org.apache.ctakes.postagger.test

org.apache.ctakes.preprocessor - package org.apache.ctakes.preprocessor

org.apache.ctakes.preprocessor.ae - package org.apache.ctakes.preprocessor.ae

org.apache.ctakes.preprocessor.test - package org.apache.ctakes.preprocessor.test

org.apache.ctakes.regression.test - package org.apache.ctakes.regression.test

org.apache.ctakes.relationextractor.ae - package org.apache.ctakes.relationextractor.ae

org.apache.ctakes.relationextractor.ae.baselines - package org.apache.ctakes.relationextractor.ae.baselines

org.apache.ctakes.relationextractor.ae.features - package org.apache.ctakes.relationextractor.ae.features

org.apache.ctakes.relationextractor.cr - package org.apache.ctakes.relationextractor.cr

org.apache.ctakes.relationextractor.data - package org.apache.ctakes.relationextractor.data

org.apache.ctakes.relationextractor.eval - package org.apache.ctakes.relationextractor.eval

org.apache.ctakes.relationextractor.knowtator - package org.apache.ctakes.relationextractor.knowtator

org.apache.ctakes.relationextractor.pipelines - package org.apache.ctakes.relationextractor.pipelines

org.apache.ctakes.sideeffect.ae - package org.apache.ctakes.sideeffect.ae

org.apache.ctakes.sideeffect.cc - package org.apache.ctakes.sideeffect.cc

org.apache.ctakes.sideeffect.type - package org.apache.ctakes.sideeffect.type

org.apache.ctakes.sideeffect.util - package org.apache.ctakes.sideeffect.util

org.apache.ctakes.smokingstatus.ae - package org.apache.ctakes.smokingstatus.ae

org.apache.ctakes.smokingstatus.cc - package org.apache.ctakes.smokingstatus.cc

org.apache.ctakes.smokingstatus.context - package org.apache.ctakes.smokingstatus.context

org.apache.ctakes.smokingstatus.context.negation - package org.apache.ctakes.smokingstatus.context.negation

org.apache.ctakes.smokingstatus.i2b2.type - package org.apache.ctakes.smokingstatus.i2b2.type

org.apache.ctakes.smokingstatus.lookup.ae - package org.apache.ctakes.smokingstatus.lookup.ae

org.apache.ctakes.smokingstatus.machine - package org.apache.ctakes.smokingstatus.machine

org.apache.ctakes.smokingstatus.MLutil - package org.apache.ctakes.smokingstatus.MLutil

org.apache.ctakes.smokingstatus.patientLevel - package org.apache.ctakes.smokingstatus.patientLevel

org.apache.ctakes.smokingstatus.type - package org.apache.ctakes.smokingstatus.type

org.apache.ctakes.smokingstatus.type.libsvm - package org.apache.ctakes.smokingstatus.type.libsvm

org.apache.ctakes.smokingstatus.util - package org.apache.ctakes.smokingstatus.util

org.apache.ctakes.temporal.ae - package org.apache.ctakes.temporal.ae

org.apache.ctakes.temporal.ae.feature - package org.apache.ctakes.temporal.ae.feature

org.apache.ctakes.temporal.ae.feature.selection - package org.apache.ctakes.temporal.ae.feature.selection

org.apache.ctakes.temporal.data.analysis - package org.apache.ctakes.temporal.data.analysis

org.apache.ctakes.temporal.eval - package org.apache.ctakes.temporal.eval

org.apache.ctakes.temporal.utils - package org.apache.ctakes.temporal.utils

org.apache.ctakes.typesystem.type.constants - package org.apache.ctakes.typesystem.type.constants

org.apache.ctakes.typesystem.type.refsem - package org.apache.ctakes.typesystem.type.refsem

org.apache.ctakes.typesystem.type.relation - package org.apache.ctakes.typesystem.type.relation

org.apache.ctakes.typesystem.type.structured - package org.apache.ctakes.typesystem.type.structured

org.apache.ctakes.typesystem.type.syntax - package org.apache.ctakes.typesystem.type.syntax

org.apache.ctakes.typesystem.type.temporary.assertion - package org.apache.ctakes.typesystem.type.temporary.assertion

org.apache.ctakes.typesystem.type.textsem - package org.apache.ctakes.typesystem.type.textsem

org.apache.ctakes.typesystem.type.textspan - package org.apache.ctakes.typesystem.type.textspan

org.apache.ctakes.typesystem.type.util - package org.apache.ctakes.typesystem.type.util

org.apache.ctakes.utils.build - package org.apache.ctakes.utils.build

org.apache.ctakes.utils.env - package org.apache.ctakes.utils.env

org.apache.ctakes.utils.kernel - package org.apache.ctakes.utils.kernel

org.apache.ctakes.utils.struct - package org.apache.ctakes.utils.struct

org.apache.ctakes.utils.test - package org.apache.ctakes.utils.test

org.apache.ctakes.utils.tree - package org.apache.ctakes.utils.tree

org.apache.ctakes.utils.wiki - package org.apache.ctakes.utils.wiki

org.apache.ctakes.utils.xcas_comparison - package org.apache.ctakes.utils.xcas_comparison

org.mitre.medfacts.uima - package org.mitre.medfacts.uima

organizeByOffset(Iterator<LookupHit>) - Static method in class org.apache.ctakes.dictionary.lookup.ae.BaseLookupConsumerImpl

Organizes the LookupHit objects by begin and end offsets.

OS_NAME - Static variable in class org.apache.ctakes.padtermspotter.cc.PADOffSetsRecord

OS_WINDOWS - Static variable in class org.apache.ctakes.padtermspotter.cc.PADOffSetsRecord

OTHER - Static variable in class org.apache.ctakes.drugner.elements.FrequencyUnitElement

OTHER - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken

OTHER_DEPPATH - Static variable in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier

OTHER_DEPTOK - Static variable in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier

OTHER_OR - Static variable in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier

OTHER_SRLARG - Static variable in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier

OTHER_TOKEN - Static variable in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier

otherVerb - Variable in class org.apache.ctakes.coreference.ae.MipacqMarkableCreator

out - Variable in class org.apache.ctakes.constituency.parser.uima.co.ParserTreeWriterConsumer

OUTCOME1 - Variable in class org.apache.ctakes.relationextractor.data.CategoricalDistribution

OUTCOME2 - Variable in class org.apache.ctakes.relationextractor.data.CategoricalDistribution

OUTCOME3 - Variable in class org.apache.ctakes.relationextractor.data.CategoricalDistribution

outputDirectory - Variable in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorPipeline.Options

outputDirectory - Variable in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorTrain.Options

outputDirectory - Variable in class org.mitre.medfacts.uima.RunZoner

outputRoot - Variable in class org.apache.ctakes.coreference.cc.PreprocessAndWriteXmi.Options

outputRoot - Variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors.Options

outputRoot - Variable in class org.apache.ctakes.relationextractor.eval.PreprocessAndWriteXmi.Options

outputRoot - Variable in class org.apache.ctakes.relationextractor.pipelines.GoldEntityAndRelationReaderPipeline

OVERLAP_A_ENV_B - Static variable in class org.apache.ctakes.core.ae.OverlapAnnotator

A completely envelopes B

OVERLAP_B_ENV_A - Static variable in class org.apache.ctakes.core.ae.OverlapAnnotator

B completely envelopes A

OVERLAP_EXACT - Static variable in class org.apache.ctakes.core.ae.OverlapAnnotator

A and B have identical offsets

OVERLAP_NONE - Static variable in class org.apache.ctakes.core.ae.OverlapAnnotator

No overlap at all between A and B

OVERLAP_PARTIAL - Static variable in class org.apache.ctakes.core.ae.OverlapAnnotator

A and B only partially overlap

OverlapAnnotator - Class in org.apache.ctakes.core.ae

OverlapAnnotator() - Constructor for class org.apache.ctakes.core.ae.OverlapAnnotator

OverlapAnnotator.Action - Interface in org.apache.ctakes.core.ae

Generic interface for performing an action if the overlap constraint is met between annotations A and B.

OverlapAnnotator.DeleteActionImpl - Class in org.apache.ctakes.core.ae

Implementation that deletes either the A, B, or both.

OverlapAnnotator.DeleteActionImpl(byte) - Constructor for class org.apache.ctakes.core.ae.OverlapAnnotator.DeleteActionImpl

OverlapAnnotator.ModifyActionImpl - Class in org.apache.ctakes.core.ae

Implementation that modifies feature values of either annotation A or B.

OverlapAnnotator.ModifyActionImpl(byte, byte, byte) - Constructor for class org.apache.ctakes.core.ae.OverlapAnnotator.ModifyActionImpl