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gamma - Variable in class org.apache.ctakes.utils.kernel.RBFKernel
gap() - Method in class org.apache.ctakes.coreference.eval.helpers.Span
GASTRIC - Static variable in class org.apache.ctakes.drugner.elements.RouteElement
GASTRIC - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken
GEL - Static variable in class org.apache.ctakes.drugner.elements.FormElement
generateAnnotationMap(JCas) - Method in class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine
generateAnnotationMap(JCas, Integer) - Method in class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine
generated - Variable in class org.apache.ctakes.regression.test.RegressionPipelineTest.StatusCallbackListenerImpl
GenerateTrainingData - Class in org.apache.ctakes.smokingstatus.MLutil
GenerateTrainingData(String, String) - Constructor for class org.apache.ctakes.smokingstatus.MLutil.GenerateTrainingData
GenericAttributeAnalysisEngine - Class in org.apache.ctakes.assertion.attributes: This class provides a basic generic attribute extraction technique based on dependency parses.
GenericAttributeAnalysisEngine() - Constructor for class org.apache.ctakes.assertion.attributes.GenericAttributeAnalysisEngine
GenericAttributeClassifier - Class in org.apache.ctakes.assertion.attributes.generic
GenericAttributeClassifier() - Constructor for class org.apache.ctakes.assertion.attributes.generic.GenericAttributeClassifier
GenericCleartkAnalysisEngine - Class in org.apache.ctakes.assertion.medfacts.cleartk
GenericCleartkAnalysisEngine() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.GenericCleartkAnalysisEngine
GenericFeaturesExtractor - Class in org.apache.ctakes.assertion.attributes.features: SubjectFeaturesExtractor Ports the features and classification decisions of the first version (logic) of the subject tool
GenericFeaturesExtractor() - Constructor for class org.apache.ctakes.assertion.attributes.features.GenericFeaturesExtractor
GenericMetaDataHitImpl - Class in org.apache.ctakes.dictionary.lookup
GenericMetaDataHitImpl(Map<String, String>) - Constructor for class org.apache.ctakes.dictionary.lookup.GenericMetaDataHitImpl
GenericModifier - Class in org.apache.ctakes.typesystem.type.textsem: The Generic modifier indicates that a named entity mention is generic, i.e., not related to the instance of a disorder, sign/symptom, etc.
GenericModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.GenericModifier: Never called.
GenericModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.GenericModifier: Internal - constructor used by generator
GenericModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.GenericModifier
GenericModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.GenericModifier
GenericModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem: The Generic modifier indicates that a named entity mention is generic, i.e., not related to the instance of a disorder, sign/symptom, etc.
GenericModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.GenericModifier_Type: initialize variables to correspond with Cas Type and Features
get(int) - Method in class org.apache.ctakes.coreference.eval.helpers.Span
get(Object) - Method in class org.apache.ctakes.utils.struct.CounterMap
get(Object) - Method in class org.apache.ctakes.utils.struct.CounterTreeMap
get1() - Method in class org.apache.ctakes.coreference.eval.helpers.SpanAlignment
get1(int) - Method in class org.apache.ctakes.coreference.eval.helpers.SpanAlignment
get2() - Method in class org.apache.ctakes.coreference.eval.helpers.SpanAlignment
get2(int) - Method in class org.apache.ctakes.coreference.eval.helpers.SpanAlignment
getAbnormalInterpretation() - Method in class org.apache.ctakes.typesystem.type.refsem.Lab: getter for abnormalInterpretation - gets
getAbnormalInterpretation(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type
getAbnormalInterpretation() - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention: getter for abnormalInterpretation - gets
getAbnormalInterpretation(int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention_Type
getAE(File) - Static method in class org.apache.ctakes.utils.test.TestUtil
getAllAnnotations() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasFile
getAlleviatingFactor() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder: getter for alleviatingFactor - gets
getAlleviatingFactor(int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
getAlleviatingFactor() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom: getter for alleviatingFactor - gets
getAlleviatingFactor(int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
getAlleviatingFactor() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention: getter for alleviatingFactor - gets
getAlleviatingFactor(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
getAlleviatingFactor() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention: getter for alleviatingFactor - gets
getAlleviatingFactor(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
getAllRows() - Method in class org.apache.ctakes.dictionary.lookup.strtable.StringTable
getAnaphor() - Method in class org.apache.ctakes.coreference.type.MarkablePair: getter for anaphor - gets
getAnaphor(int) - Method in class org.apache.ctakes.coreference.type.MarkablePair_Type
getAnaphor() - Method in class org.apache.ctakes.coreference.type.MarkablePairSet: getter for anaphor - gets
getAnaphor(int) - Method in class org.apache.ctakes.coreference.type.MarkablePairSet_Type
getAnaphoric_prob() - Method in class org.apache.ctakes.coreference.type.Markable: getter for anaphoric_prob - gets
getAnaphoric_prob(int) - Method in class org.apache.ctakes.coreference.type.Markable_Type
getAnaphoricityFeatures() - Static method in class org.apache.ctakes.coreference.util.FeatureVector
getAnnotation(int) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasFile: Returns the XcasAnnotation object associated with the specified internal id.
getAnnotationIterator(JCas) - Method in class org.apache.ctakes.drugner.ae.impl.NegContextInitializerImpl
getAnnotations() - Method in class org.apache.ctakes.preprocessor.DocumentMetaData: Gets a list of Annotation objects that represent annotations based off of document syntactic cues.
getAnnotationsInSpan(JCas, int, int, int, int[]) - Static method in class org.apache.ctakes.core.util.FSUtil
getAnnotationsInSpanIterator(JCas, int, int, int) - Static method in class org.apache.ctakes.core.util.FSUtil: Deprecated.
getAnnotationsIteratorInSpan(JCas, int, int, int) - Static method in class org.apache.ctakes.core.util.FSUtil: For correct behavior, requires types to be listed in TypePriorities so that the subiterator works as expected
getAnnotationTree(JCas, Annotation) - Static method in class org.apache.ctakes.constituency.parser.util.AnnotationTreeUtils
getAnnotatorDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfAnnotationSpans_ImplBase
getAnnotatorDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKEventSpans
getAnnotatorDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKTimeSpans
getAnnotatorDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventSpans
getAnnotatorDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfTimeSpans
getAnnotatorNames() - Method in class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader: Returns the names of the annotators in the Knowtator files that represent the gold standard
getAnnotatorNames() - Method in class org.apache.ctakes.temporal.ae.THYMEKnowtatorXMLReader
getAntecedent() - Method in class org.apache.ctakes.coreference.type.MarkablePair: getter for antecedent - gets Proposed antecedent
getAntecedent(int) - Method in class org.apache.ctakes.coreference.type.MarkablePair_Type
getAntecedentList() - Method in class org.apache.ctakes.coreference.type.MarkablePairSet: getter for antecedentList - gets
getAntecedentList(int) - Method in class org.apache.ctakes.coreference.type.MarkablePairSet_Type
getArg1() - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator.IdentifiedAnnotationPair
getArg1() - Method in class org.apache.ctakes.typesystem.type.relation.AttributeRelation: getter for arg1 - gets
getArg1(int) - Method in class org.apache.ctakes.typesystem.type.relation.AttributeRelation_Type
getArg1() - Method in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation: getter for arg1 - gets
getArg1(int) - Method in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation_Type
getArg1() - Method in class org.apache.ctakes.typesystem.type.relation.ElementRelation: getter for arg1 - gets
getArg1(int) - Method in class org.apache.ctakes.typesystem.type.relation.ElementRelation_Type
getArg2() - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator.IdentifiedAnnotationPair
getArg2() - Method in class org.apache.ctakes.typesystem.type.relation.AttributeRelation: getter for arg2 - gets
getArg2(int) - Method in class org.apache.ctakes.typesystem.type.relation.AttributeRelation_Type
getArg2() - Method in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation: getter for arg2 - gets
getArg2(int) - Method in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation_Type
getArg2() - Method in class org.apache.ctakes.typesystem.type.relation.ElementRelation: getter for arg2 - gets
getArg2(int) - Method in class org.apache.ctakes.typesystem.type.relation.ElementRelation_Type
getArgument() - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument: getter for argument - gets
getArgument(int) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument_Type
getArgument() - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation: getter for argument - gets
getArgument(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type
getAspect() - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties: getter for aspect - gets
getAspect(int) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
getAssertionType() - Method in class org.apache.ctakes.assertion.medfacts.types.Assertion: getter for assertionType - gets assertion type -- one of present, absent, possible, conditional, hypothetical, or assocated_with_someone_else
getAssertionType(int) - Method in class org.apache.ctakes.assertion.medfacts.types.Assertion_Type
getAssociatedConcept() - Method in class org.apache.ctakes.assertion.medfacts.types.Assertion: getter for associatedConcept - gets
getAssociatedConcept(int) - Method in class org.apache.ctakes.assertion.medfacts.types.Assertion_Type
getAssociatedSignSymptom() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder: getter for associatedSignSymptom - gets
getAssociatedSignSymptom(int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
getAssociatedSignSymptom() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention: getter for associatedSignSymptom - gets
getAssociatedSignSymptom(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
getAttribute() - Method in class org.apache.ctakes.typesystem.type.util.Pair: getter for attribute - gets
getAttribute(int) - Method in class org.apache.ctakes.typesystem.type.util.Pair_Type
getAttribute(String) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation: Returns the value of the specified attribute.
getAttributeName() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.AttributeValue: getter for attributeName - gets
getAttributeName(int) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.AttributeValue_Type
getAttributes(Document) - Static method in class org.apache.ctakes.assertion.cr.XMLReader: Attributes of each named entity indexed on mention ids.
getAttributes(Document, String[]) - Static method in class org.apache.ctakes.assertion.cr.XMLReader: Attributes of each named entity indexed on mention ids.
getAttributeStringValue() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue: getter for attributeStringValue - gets
getAttributeStringValue(int) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue_Type
getAuthorSpecialty() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData: getter for authorSpecialty - gets
getAuthorSpecialty(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.AssociatedCodeElement
getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.AssociatedPrimaryCodeElement
getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.AssociatedSecondaryCodeElement
getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.ConfidenceScoreElement
getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.DosageElement
getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement
getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.DurationElement
getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.FormElement
getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.FrequencyElement
getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.FrequencyUnitElement
getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.RouteElement
getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.StartDateElement
getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.StrengthElement
getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.StrengthUnitElement
getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.TextMentionElement
getBirthDate() - Method in class org.apache.ctakes.typesystem.type.structured.Demographics: getter for birthDate - gets
getBirthDate(int) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
getBodyLaterality() - Method in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite: getter for bodyLaterality - gets
getBodyLaterality(int) - Method in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite_Type
getBodyLaterality() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder: getter for bodyLaterality - gets
getBodyLaterality(int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
getBodyLaterality() - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure: getter for bodyLaterality - gets
getBodyLaterality(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
getBodyLaterality() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom: getter for bodyLaterality - gets
getBodyLaterality(int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
getBodyLaterality() - Method in class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention: getter for bodyLaterality - gets
getBodyLaterality(int) - Method in class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention_Type
getBodyLaterality() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention: getter for bodyLaterality - gets
getBodyLaterality(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
getBodyLaterality() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention: getter for bodyLaterality - gets
getBodyLaterality(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
getBodyLaterality() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention: getter for bodyLaterality - gets
getBodyLaterality(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
getBodyLocation() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder: getter for bodyLocation - gets
getBodyLocation(int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
getBodyLocation() - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure: getter for bodyLocation - gets
getBodyLocation(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
getBodyLocation() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom: getter for bodyLocation - gets
getBodyLocation(int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
getBodyLocation() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention: getter for bodyLocation - gets
getBodyLocation(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
getBodyLocation() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention: getter for bodyLocation - gets
getBodyLocation(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
getBodyLocation() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention: getter for bodyLocation - gets
getBodyLocation(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
getBodySide() - Method in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite: getter for bodySide - gets
getBodySide(int) - Method in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite_Type
getBodySide() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder: getter for bodySide - gets
getBodySide(int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
getBodySide() - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure: getter for bodySide - gets
getBodySide(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
getBodySide() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom: getter for bodySide - gets
getBodySide(int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
getBodySide() - Method in class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention: getter for bodySide - gets
getBodySide(int) - Method in class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention_Type
getBodySide() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention: getter for bodySide - gets
getBodySide(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
getBodySide() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention: getter for bodySide - gets
getBodySide(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
getBodySide() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention: getter for bodySide - gets
getBodySide(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline1DegreeOfRelationExtractorAnnotator
getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline1EntityMentionPairRelationExtractorAnnotator
getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline2DegreeOfRelationExtractorAnnotator
getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline2EntityMentionPairRelationExtractorAnnotator
getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline3DegreeOfRelationExtractorAnnotator
getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline3EntityMentionPairRelationExtractorAnnotator
getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.DegreeOfRelationExtractorAnnotator
getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.EntityMentionPairRelationExtractorAnnotator
getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator: Selects the relevant mentions/annotations within a covering annotation for relation identification/extraction.
getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.EventTimeRelationAnnotator
getCanonicalForm() - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken: getter for canonicalForm - gets
getCanonicalForm(int) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken_Type
getCapitalization() - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken: getter for capitalization - gets
getCapitalization(int) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken_Type
getCaps() - Method in class org.apache.ctakes.core.fsm.adapters.WordTokenAdapter
getCaps() - Method in class org.apache.ctakes.core.fsm.token.adapter.WordTokenAdapter
getCaps() - Method in interface org.apache.ctakes.core.fsm.token.WordToken
getCaps() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token: Gets the caps state of the token.
getCategory() - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties: getter for category - gets Type of Event.
getCategory(int) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
getCategory() - Method in class org.apache.ctakes.typesystem.type.relation.Relation: getter for category - gets
getCategory(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
getCategory() - Method in class org.apache.ctakes.typesystem.type.textsem.Modifier: getter for category - gets
getCategory(int) - Method in class org.apache.ctakes.typesystem.type.textsem.Modifier_Type
getChangeStatus() - Method in class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation: getter for changeStatus - gets Indicates the drug change status of 'stop', 'start', 'increase', 'decrease', or 'noChange'.
getChangeStatus(int) - Method in class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation_Type
getChangeStatusBegin() - Method in class org.apache.ctakes.drugner.DrugMention
getChangeStatusBegin() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for changeStatusBegin - gets
getChangeStatusBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getChangeStatusEnd() - Method in class org.apache.ctakes.drugner.DrugMention
getChangeStatusEnd() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for changeStatusEnd - gets
getChangeStatusEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getChar() - Method in class org.apache.ctakes.core.fsm.adapters.CharacterTokenAdapter
getChar() - Method in class org.apache.ctakes.core.fsm.token.adapter.CharacterTokenAdapter
getChar() - Method in interface org.apache.ctakes.core.fsm.token.CharacterToken
getChildren() - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode: getter for children - gets
getChildren(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode: indexed getter for children - gets an indexed value -
getChildren(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
getChildren(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
getChunkType() - Method in class org.apache.ctakes.typesystem.type.syntax.Chunk: getter for chunkType - gets
getChunkType(int) - Method in class org.apache.ctakes.typesystem.type.syntax.Chunk_Type
getClassification() - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence: getter for classification - gets Smoking status classification for the given sentence.
getClassification(int) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type
getClassification() - Method in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification: getter for classification - gets represents the document level classification that RecordResolutionAnnotator assigns
getClassification(int) - Method in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification_Type
getCode() - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept: getter for code - gets
getCode(int) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type
getCodingScheme() - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept: getter for codingScheme - gets
getCodingScheme(int) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type
getCollectionReader(List<File>) - Method in class org.apache.ctakes.assertion.eval.AssertionEvaluation
getCollectionReader(List<File>) - Method in class org.apache.ctakes.relationextractor.eval.ModifierExtractorEvaluation
getCollectionReader(List<File>) - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation
getCollectionReader(List<Integer>) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
getCommonAncestor(TreebankNode, TreebankNode) - Static method in class org.apache.ctakes.constituency.parser.util.AnnotationTreeUtils
getCommonNode() - Method in class org.apache.ctakes.dependency.parser.util.DependencyPath
getConceptText() - Method in class org.apache.ctakes.assertion.medfacts.types.Concept: getter for conceptText - gets
getConceptText(int) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept_Type
getConceptType() - Method in class org.apache.ctakes.assertion.medfacts.types.Concept: getter for conceptType - gets the concept type -- one of problem, treatment, or test
getConceptType(int) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept_Type
getConditional() - Method in class org.apache.ctakes.typesystem.type.refsem.Element: getter for conditional - gets
getConditional(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
getConditional() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation: getter for conditional - gets
getConditional(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
getConfidence() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for confidence - gets The confidence of the annotation.
getConfidence(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getConfidence() - Method in class org.apache.ctakes.typesystem.type.refsem.Element: getter for confidence - gets
getConfidence(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
getConfidence() - Method in class org.apache.ctakes.typesystem.type.relation.Relation: getter for confidence - gets
getConfidence(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
getConfidence() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation: getter for confidence - gets The confidence of the annotation.
getConfidence(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
getConfidenceScoreElement() - Method in class org.apache.ctakes.drugner.DrugMention
getConfidenceScoreElement() - Method in interface org.apache.ctakes.drugner.DrugModel
getConfidenceScoreElement() - Method in class org.apache.ctakes.drugner.elements.ConfidenceScoreElement
getConnection() - Method in interface org.apache.ctakes.core.resource.JdbcConnectionResource: Gets the JDBC connection.
getConnection() - Method in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl
getContent() - Method in class org.apache.ctakes.core.util.DocumentSection
getContent() - Method in class org.apache.ctakes.coreference.type.Markable: getter for content - gets The markable instance, i.e., a Named Entity, pronoun Token, etc.
getContent(int) - Method in class org.apache.ctakes.coreference.type.Markable_Type
getContextHit(List, int) - Method in class org.apache.ctakes.drugner.ae.impl.NegContextInitializerImpl
getContextMap(JCas, int, int) - Method in class org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl: returns an empty map Gets context for the specified window.
getContextMap(JCas, int, int) - Method in class org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl: Gets context for the specified window.
getContextMap(JCas, int, int) - Method in interface org.apache.ctakes.dictionary.lookup.ae.LookupInitializer: Gets context for the specified window.
getContextualAspect() - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties: getter for contextualAspect - gets
getContextualAspect(int) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
getContextualModality() - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties: getter for contextualModality - gets
getContextualModality(int) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
getContractionTokenLen() - Method in class org.apache.ctakes.core.nlp.tokenizer.ContractionResult
getCosineSimilarity(String, String) - Method in class org.apache.ctakes.utils.wiki.WikiIndex: Send two queries to the index.
getCourse() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder: getter for course - gets
getCourse(int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
getCourse() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom: getter for course - gets
getCourse(int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
getCourse() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention: getter for course - gets
getCourse(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
getCourse() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention: getter for course - gets
getCourse(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline1EntityMentionPairRelationExtractorAnnotator
getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline2DegreeOfRelationExtractorAnnotator
getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline2EntityMentionPairRelationExtractorAnnotator
getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline3EntityMentionPairRelationExtractorAnnotator
getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.DegreeOfRelationExtractorAnnotator
getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.EntityMentionPairRelationExtractorAnnotator
getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator
getCoveringClass() - Method in class org.apache.ctakes.temporal.ae.EventTimeRelationAnnotator
getCoveringSpan() - Method in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation: Get a span that approximates KnowtatorAnnotation.spans, giving the earliest begin offset and the latest end offset.
getCpostag() - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode: getter for cpostag - gets
getCpostag(int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
getCR(File) - Static method in class org.apache.ctakes.utils.test.TestUtil
getCuePhrase() - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation: getter for cuePhrase - gets cue phrase itself (from lookup list)
getCuePhrase(int) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type
getCuePhraseAssertionFamily() - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation: getter for cuePhraseAssertionFamily - gets which assertion family this cue phrase belongs to (negation, uncertainty, or conditional)
getCuePhraseAssertionFamily(int) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type
getCuePhraseCategory() - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation: getter for cuePhraseCategory - gets
getCuePhraseCategory(int) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type
getCuePhraseFirstWord() - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation: getter for cuePhraseFirstWord - gets first word of cue phrase
getCuePhraseFirstWord(int) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type
getCui() - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept: getter for cui - gets
getCui(int) - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept_Type
getCuiCode() - Method in class org.apache.ctakes.drugner.elements.AssociatedCodeElement
getCuiCode() - Method in class org.apache.ctakes.drugner.elements.AssociatedPrimaryCodeElement
getCuiCode() - Method in class org.apache.ctakes.drugner.elements.AssociatedSecondaryCodeElement
getDataWriterDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfAnnotationSpans_ImplBase
getDataWriterDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKEventSpans
getDataWriterDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKTimeSpans
getDataWriterDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventSpans
getDataWriterDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfTimeSpans
getDate() - Method in class org.apache.ctakes.drugner.elements.StartDateElement
getDate() - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention: getter for date - gets
getDate(int) - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention_Type
getDateValue() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue: getter for dateValue - gets
getDateValue(int) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue_Type
getDay() - Method in class org.apache.ctakes.typesystem.type.refsem.Date: getter for day - gets
getDay(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Date_Type
getDeathDate() - Method in class org.apache.ctakes.typesystem.type.structured.Demographics: getter for deathDate - gets
getDeathDate(int) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
getDegree() - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties: getter for degree - gets
getDegree(int) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
getDeltaFlag() - Method in class org.apache.ctakes.typesystem.type.refsem.Lab: getter for deltaFlag - gets
getDeltaFlag(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type
getDeltaFlag() - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention: getter for deltaFlag - gets
getDeltaFlag(int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention_Type
getDemCorefFeatures() - Static method in class org.apache.ctakes.coreference.util.FeatureVector
getDemographics() - Method in class org.apache.ctakes.typesystem.type.structured.Metadata: getter for demographics - gets
getDemographics(int) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type
getDependencyNode(JCas, Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility: Returns the first ConllDependencyNode in the CAS w/ same begin and end as the given Annotation
getDependencyNodes(JCas, Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility: Returns the ConllDependencyNodes in the CAS w/ subsumed begins and ends
getDeprel() - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode: getter for deprel - gets
getDeprel(int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
getDescription(Object...) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
getDescription() - Static method in class org.apache.ctakes.core.cc.XmiWriterCasConsumerCtakes: Parses and returns the descriptor for this collection reader.
getDescription(Object...) - Static method in class org.apache.ctakes.relationextractor.ae.ModifierExtractorAnnotator
getDescription(File) - Static method in class org.apache.ctakes.temporal.ae.THYMEKnowtatorXMLReader
getDescription(Class<?>...) - Static method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.CopyFromGold
getDescriptorURL() - Static method in class org.apache.ctakes.core.cc.XmiWriterCasConsumerCtakes
getDevPatientSets(List<Integer>) - Static method in class org.apache.ctakes.temporal.eval.THYMEData
getDictionary() - Static method in class org.apache.ctakes.relationextractor.ae.features.WordNetUtils: Initialize WordNet dictionary.
getDictMetaDataHit() - Method in class org.apache.ctakes.dictionary.lookup.vo.LookupHit
getDiscoveryTechnique() - Method in class org.apache.ctakes.typesystem.type.refsem.Element: getter for discoveryTechnique - gets
getDiscoveryTechnique(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
getDiscoveryTechnique() - Method in class org.apache.ctakes.typesystem.type.relation.Relation: getter for discoveryTechnique - gets
getDiscoveryTechnique(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
getDiscoveryTechnique() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation: getter for discoveryTechnique - gets
getDiscoveryTechnique(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
getDistance(JCas, RelationExtractorAnnotator.IdentifiedAnnotationPair) - Static method in class org.apache.ctakes.relationextractor.ae.baselines.Utils: Calculate the distance (in tokens) between two identified annotations.
getDocTimeRel() - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties: getter for docTimeRel - gets
getDocTimeRel(int) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
getDocumentID(JCas) - Static method in class org.apache.ctakes.core.util.DocumentIDAnnotationUtil
getDocumentID() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID: getter for documentID - gets
getDocumentID(int) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID_Type
getDocumentID() - Method in class org.apache.ctakes.typesystem.type.structured.DocumentID: getter for documentID - gets
getDocumentID(int) - Method in class org.apache.ctakes.typesystem.type.structured.DocumentID_Type
getDocumentStandard() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData: getter for documentStandard - gets
getDocumentStandard(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
getDosage() - Method in class org.apache.ctakes.drugner.elements.DosageElement
getDosage() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for dosage - gets Dosage refers to how many of each drug the patient is taking.
getDosage(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getDosageBegin() - Method in class org.apache.ctakes.drugner.DrugMention
getDosageBegin() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for dosageBegin - gets
getDosageBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getDosageElement() - Method in class org.apache.ctakes.drugner.DrugMention
getDosageElement() - Method in interface org.apache.ctakes.drugner.DrugModel
getDosageEnd() - Method in class org.apache.ctakes.drugner.DrugMention
getDosageEnd() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for dosageEnd - gets
getDosageEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getDrug() - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation: getter for drug - gets
getDrug(int) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation_Type
getDrugChangeStatus() - Method in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement
getDrugChangeStatus() - Method in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken
getDrugChangeStatus() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for drugChangeStatus - gets Status refers to the whether the medication is currently being taken or not.
getDrugChangeStatus(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getDrugChangeStatusElement() - Method in class org.apache.ctakes.drugner.DrugMention
getDrugChangeStatusElement() - Method in interface org.apache.ctakes.drugner.DrugModel
getDrugsInSpan(JCas, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil: Return the List of drug IdentifiedAnnotation within the span
getDuratationBegin() - Method in class org.apache.ctakes.drugner.DrugMention
getDuratationEnd() - Method in class org.apache.ctakes.drugner.DrugMention
getDuration() - Method in class org.apache.ctakes.drugner.elements.DurationElement
getDuration() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for duration - gets Duration refers to for how long the patient is expected to take the drug.
getDuration(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getDuration() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder: getter for duration - gets
getDuration(int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
getDuration() - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure: getter for duration - gets
getDuration(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
getDuration() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom: getter for duration - gets
getDuration(int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
getDuration() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention: getter for duration - gets
getDuration(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
getDuration() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention: getter for duration - gets
getDuration(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
getDuration() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention: getter for duration - gets
getDuration(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
getDurationBegin() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for durationBegin - gets
getDurationBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getDurationElement() - Method in class org.apache.ctakes.drugner.DrugMention
getDurationElement() - Method in interface org.apache.ctakes.drugner.DrugModel
getDurationEnd() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for durationEnd - gets
getDurationEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getEnd() - Method in class org.apache.ctakes.core.sentence.SentenceSpan
getEndDate() - Method in class org.apache.ctakes.typesystem.type.refsem.Medication: getter for endDate - gets
getEndDate(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
getEndDate() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention: getter for endDate - gets
getEndDate(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
getEndDate() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention: getter for endDate - gets
getEndDate(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
getEndDateElement() - Method in class org.apache.ctakes.drugner.DrugMention
getEndDateElement() - Method in interface org.apache.ctakes.drugner.DrugModel
getEndLine() - Method in class org.apache.ctakes.core.util.DocumentSection
getEndOffset() - Method in class org.apache.ctakes.core.fsm.adapters.BaseTokenAdapter
getEndOffset() - Method in class org.apache.ctakes.core.fsm.output.BaseTokenImpl
getEndOffset() - Method in class org.apache.ctakes.core.fsm.token.adapter.BaseTokenAdapter
getEndOffset() - Method in interface org.apache.ctakes.core.fsm.token.BaseToken
getEndOffset() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token: Gets the end offset.
getEndOffset() - Method in class org.apache.ctakes.dictionary.lookup.ae.LookupAnnotationToJCasAdapter: Gets the end offset.
getEndOffset() - Method in interface org.apache.ctakes.dictionary.lookup.vo.LookupAnnotation: Gets the end offset.
getEndOffset() - Method in class org.apache.ctakes.dictionary.lookup.vo.LookupAnnotationToTokAdapter
getEndOffset() - Method in class org.apache.ctakes.dictionary.lookup.vo.LookupHit
getEndOffset() - Method in class org.apache.ctakes.drugner.elements.AssociatedCodeElement
getEndOffset() - Method in class org.apache.ctakes.drugner.elements.AssociatedPrimaryCodeElement
getEndOffset() - Method in class org.apache.ctakes.drugner.elements.AssociatedSecondaryCodeElement
getEndOffset() - Method in class org.apache.ctakes.drugner.elements.ConfidenceScoreElement
getEndOffset() - Method in class org.apache.ctakes.drugner.elements.DosageElement
getEndOffset() - Method in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement
getEndOffset() - Method in class org.apache.ctakes.drugner.elements.DurationElement
getEndOffset() - Method in class org.apache.ctakes.drugner.elements.FormElement
getEndOffset() - Method in class org.apache.ctakes.drugner.elements.FrequencyElement
getEndOffset() - Method in class org.apache.ctakes.drugner.elements.FrequencyUnitElement
getEndOffset() - Method in class org.apache.ctakes.drugner.elements.RouteElement
getEndOffset() - Method in class org.apache.ctakes.drugner.elements.StartDateElement
getEndOffset() - Method in class org.apache.ctakes.drugner.elements.StrengthElement
getEndOffset() - Method in class org.apache.ctakes.drugner.elements.StrengthUnitElement
getEndOffset() - Method in class org.apache.ctakes.drugner.elements.TextMentionElement
getEndOffset() - Method in class org.apache.ctakes.drugner.fsm.output.elements.BaseTokenImpl
getEndOfSentenceCharacters() - Method in class org.apache.ctakes.core.sentence.EndOfSentenceScannerImpl
getEndTime() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder: getter for endTime - gets
getEndTime(int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
getEndTime() - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure: getter for endTime - gets
getEndTime(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
getEndTime() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom: getter for endTime - gets
getEndTime(int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
getEndTime() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention: getter for endTime - gets
getEndTime(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
getEndTime() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention: getter for endTime - gets
getEndTime(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
getEndTime() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention: getter for endTime - gets
getEndTime(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
getEntity() - Method in class org.apache.ctakes.typesystem.type.textsem.EntityMention: getter for entity - gets
getEntity(int) - Method in class org.apache.ctakes.typesystem.type.textsem.EntityMention_Type
getEntityAttributes(Document) - Static method in class org.apache.ctakes.assertion.cr.XMLReader: Attribute mention IDs of each named entity, indexed on mention ids Filter based on entity types, so non-NE get left out.
getEntityMentions(Document) - Static method in class org.apache.ctakes.assertion.cr.XMLReader: Get spans of named entity annotations indexed on knowtator mention id
getEntityMentions(Document) - Static method in class org.apache.ctakes.relationextractor.knowtator.XMLReader: Get spans of named entity annotations indexed on knowtator mention id
getEntityStats(String) - Static method in class org.apache.ctakes.relationextractor.data.Stats
getEntityTypeId(String) - Static method in class org.apache.ctakes.relationextractor.cr.Mapper: Map entity type to its integer id.
getEntityTypes(Document) - Static method in class org.apache.ctakes.assertion.cr.XMLReader: Type of each named entity indexed on mention ids
getEntityTypes(Document) - Static method in class org.apache.ctakes.relationextractor.knowtator.XMLReader: Type of each named entity indexed on mention ids
getEntries(String) - Method in class org.apache.ctakes.dictionary.lookup.BaseDictionaryImpl: Deprecated.
getEntries(String) - Method in interface org.apache.ctakes.dictionary.lookup.Dictionary: Gets any meta data entries associated with the specified input text.
getEntries(String) - Method in class org.apache.ctakes.dictionary.lookup.jdbc.JdbcDictionaryImpl: Gets any meta data entries associated with the specified input text.
getEntries(String) - Method in class org.apache.ctakes.dictionary.lookup.lucene.LuceneDictionaryImpl: Gets any meta data entries associated with the specified input text.
getEntries(String) - Method in class org.apache.ctakes.dictionary.lookup.strtable.StringTableDictionaryImpl: Gets any meta data entries associated with the specified input text.
getEnv(String, UimaContext) - Static method in class org.apache.ctakes.utils.env.EnvironmentVariable: Get the value of some variable in the full (os, user, java, ctakes) environment.
getEnv(String) - Static method in class org.apache.ctakes.utils.env.EnvironmentVariable: Get the value of some variable in the full (os, user, java, ctakes) environment.
getEvent() - Method in class org.apache.ctakes.typesystem.type.textsem.EventMention: getter for event - gets
getEvent(int) - Method in class org.apache.ctakes.typesystem.type.textsem.EventMention_Type
getExacerbatingFactor() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder: getter for exacerbatingFactor - gets
getExacerbatingFactor(int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
getExacerbatingFactor() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom: getter for exacerbatingFactor - gets
getExacerbatingFactor(int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
getExacerbatingFactor() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention: getter for exacerbatingFactor - gets
getExacerbatingFactor(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
getExacerbatingFactor() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention: getter for exacerbatingFactor - gets
getExacerbatingFactor(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
getExternalId() - Method in class org.apache.ctakes.assertion.medfacts.types.Concept: getter for externalId - gets
getExternalId(int) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept_Type
getFeats() - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode: getter for feats - gets
getFeats(int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
getFeature() - Method in class org.apache.ctakes.coreference.type.BooleanLabeledFS: getter for feature - gets
getFeature(int) - Method in class org.apache.ctakes.coreference.type.BooleanLabeledFS_Type
getFeatureExtractors() - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator: Defines the list of feature extractors used by the classifier.
getFeatureExtractors() - Method in class org.apache.ctakes.temporal.ae.EventTimeRelationAnnotator
getFeatureName(Feature) - Method in class org.apache.ctakes.temporal.ae.feature.selection.FeatureSelection
getFeatureName(Feature) - Method in class org.apache.ctakes.temporal.utils.SMOTEplus
getFeatures() - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature: getter for features - gets
getFeatures(int) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature: indexed getter for features - gets an indexed value -
getFeatures(int) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature_Type
getFeatures(int, int) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature_Type
getFeatureSelectionThreshold() - Method in interface org.apache.ctakes.temporal.eval.EvaluationOfEventSpans.Options
getFeatureStructureAtIndex(JCas, Class<T>, int) - Static method in class org.apache.ctakes.utils.test.TestUtil
getFeatureStructureSize(JCas, Class<T>) - Static method in class org.apache.ctakes.utils.test.TestUtil
getFieldValue(String) - Method in class org.apache.ctakes.dictionary.lookup.strtable.StringTableRow
getFile() - Method in interface org.apache.ctakes.core.resource.FileResource
getFile() - Method in class org.apache.ctakes.core.resource.FileResourceImpl
getFileInExistingDir(String) - Static method in class org.apache.ctakes.core.ae.SentenceDetector
getFileName() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasFile
getFirstName() - Method in class org.apache.ctakes.typesystem.type.structured.Demographics: getter for firstName - gets
getFirstName(int) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
getFirstNameSoundex() - Method in class org.apache.ctakes.typesystem.type.structured.Demographics: getter for firstNameSoundex - gets
getFirstNameSoundex(int) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
getFocusText() - Method in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation: getter for FocusText - gets
getFocusText(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation_Type
getForm() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for form - gets Form refers to the physical appearance of the drug.
getForm(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getForm() - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode: getter for form - gets
getForm(int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
getFormBegin() - Method in class org.apache.ctakes.drugner.DrugMention
getFormBegin() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for formBegin - gets
getFormBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getFormElement() - Method in class org.apache.ctakes.drugner.DrugMention
getFormElement() - Method in interface org.apache.ctakes.drugner.DrugModel
getFormEnd() - Method in class org.apache.ctakes.drugner.DrugMention
getFormEnd() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for formEnd - gets
getFormEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getFormMention() - Method in class org.apache.ctakes.drugner.elements.FormElement
getFormMethod() - Method in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken
getFrameSet() - Method in class org.apache.ctakes.typesystem.type.textsem.Predicate: getter for frameSet - gets
getFrameSet(int) - Method in class org.apache.ctakes.typesystem.type.textsem.Predicate_Type
getFrequency() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for frequency - gets Frequency refers to how often the patient needs to take the drug.
getFrequency(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getFrequencyBegin() - Method in class org.apache.ctakes.drugner.DrugMention
getFrequencyBegin() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for frequencyBegin - gets
getFrequencyBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getFrequencyElement() - Method in class org.apache.ctakes.drugner.DrugMention
getFrequencyElement() - Method in interface org.apache.ctakes.drugner.DrugModel
getFrequencyEnd() - Method in class org.apache.ctakes.drugner.DrugMention
getFrequencyEnd() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for frequencyEnd - gets
getFrequencyEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getFrequencyMention() - Method in class org.apache.ctakes.drugner.elements.FrequencyElement
getFrequencyUnit() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for frequencyUnit - gets
getFrequencyUnit(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getFrequencyUnitElement() - Method in class org.apache.ctakes.drugner.DrugMention
getFrequencyUnitElement() - Method in interface org.apache.ctakes.drugner.DrugModel
getFrequencyUnitMention() - Method in class org.apache.ctakes.drugner.elements.FrequencyUnitElement
getFrequencyUnitQuantity() - Method in class org.apache.ctakes.drugner.fsm.output.elements.FrequencyUnitToken
getFSGenerator() - Method in class org.apache.ctakes.assertion.medfacts.types.Assertion_Type
getFSGenerator() - Method in class org.apache.ctakes.assertion.medfacts.types.Concept_Type
getFSGenerator() - Method in class org.apache.ctakes.assertion.zoner.types.Heading_Type
getFSGenerator() - Method in class org.apache.ctakes.assertion.zoner.types.Subzone_Type
getFSGenerator() - Method in class org.apache.ctakes.assertion.zoner.types.Zone_Type
getFSGenerator() - Method in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree_Type
getFSGenerator() - Method in class org.apache.ctakes.coreference.type.BooleanLabeledFS_Type
getFSGenerator() - Method in class org.apache.ctakes.coreference.type.DemMarkable_Type
getFSGenerator() - Method in class org.apache.ctakes.coreference.type.Markable_Type
getFSGenerator() - Method in class org.apache.ctakes.coreference.type.MarkablePair_Type
getFSGenerator() - Method in class org.apache.ctakes.coreference.type.MarkablePairSet_Type
getFSGenerator() - Method in class org.apache.ctakes.coreference.type.NEMarkable_Type
getFSGenerator() - Method in class org.apache.ctakes.coreference.type.Pair_Type
getFSGenerator() - Method in class org.apache.ctakes.coreference.type.PronounMarkable_Type
getFSGenerator() - Method in class org.apache.ctakes.drugner.type.ChunkAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.drugner.type.DecimalStrengthAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.drugner.type.DosagesAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.drugner.type.DurationAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.drugner.type.FormAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.drugner.type.FractionStrengthAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.drugner.type.FrequencyAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.drugner.type.FrequencyUnitAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.drugner.type.RangeStrengthAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.drugner.type.RouteAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.drugner.type.StrengthAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.drugner.type.StrengthUnitAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.drugner.type.SuffixStrengthAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.padtermspotter.type.PADHit_Type
getFSGenerator() - Method in class org.apache.ctakes.padtermspotter.type.PADLocation_Type
getFSGenerator() - Method in class org.apache.ctakes.padtermspotter.type.PADTerm_Type
getFSGenerator() - Method in class org.apache.ctakes.padtermspotter.type.SubSection_Type
getFSGenerator() - Method in class org.apache.ctakes.sideeffect.type.PSESentence_Type
getFSGenerator() - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature_Type
getFSGenerator() - Method in class org.apache.ctakes.sideeffect.type.SESentence_Type
getFSGenerator() - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type
getFSGenerator() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.AttributeValue_Type
getFSGenerator() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue_Type
getFSGenerator() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID_Type
getFSGenerator() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue_Type
getFSGenerator() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NumericAttributeValue_Type
getFSGenerator() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue_Type
getFSGenerator() - Method in class org.apache.ctakes.smokingstatus.type.NonSmokerNamedEntityAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification_Type
getFSGenerator() - Method in class org.apache.ctakes.smokingstatus.type.UnknownSmokerNamedEntityAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.Attribute_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.BodyLaterality_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.BodySide_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.Course_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.Date_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.Entity_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.Event_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.LabValue_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDosage_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDuration_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationForm_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationRoute_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.Severity_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.Time_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.relation.Affects_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.relation.AffectsTextRelation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.relation.AspectualTextRelation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.relation.AttributeRelation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.relation.CoreferenceRelation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.relation.DegreeOf_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.relation.ElementRelation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.relation.LocationOf_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.relation.ManifestationOf_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.relation.ManifestationOfTextRelation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.relation.ResultOf_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.relation.ResultOfTextRelation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.relation.TemporalRelation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.relation.TemporalTextRelation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.relation.UMLSRelation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.structured.DocumentClassification_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.structured.DocumentID_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.ADJP_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.ADVP_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.Chunk_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.CONJP_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.ContractionToken_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.INTJ_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.Lemma_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.LST_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.NewlineToken_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.NP_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.NumToken_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.O_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.PP_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.PRT_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.PunctuationToken_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.SBAR_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.StanfordDependency_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.SymbolToken_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.UCP_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.VP_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.BodySideModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.ConditionalModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.CourseModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.DateAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.EntityMention_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.EventMention_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.FractionAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.GenericModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.LabValueModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.Modifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.PolarityModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.Predicate_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.RangeAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.SeverityModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.SubjectModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.TimeAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textspan.List_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textspan.Paragraph_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textspan.Segment_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.textspan.Sentence_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.util.Pair_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.util.Pairs_Type
getFSGenerator() - Method in class org.apache.ctakes.typesystem.type.util.ProbabilityDistribution_Type
getFUBegin() - Method in class org.apache.ctakes.drugner.DrugMention
getFuBegin() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for fuBegin - gets
getFuBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getFUENd() - Method in class org.apache.ctakes.drugner.DrugMention
getFuEnd() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for fuEnd - gets
getFuEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getGender() - Method in class org.apache.ctakes.typesystem.type.structured.Demographics: getter for gender - gets
getGender(int) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
getGeneric(JCas, IdentifiedAnnotation) - Static method in class org.apache.ctakes.assertion.attributes.generic.GenericAttributeClassifier
getGeneric() - Method in class org.apache.ctakes.typesystem.type.refsem.Element: getter for generic - gets
getGeneric(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
getGeneric() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation: getter for generic - gets
getGeneric(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
getGoldAnnotations(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfAnnotationSpans_ImplBase
getGoldAnnotations(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKEventSpans
getGoldAnnotations(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKTimeSpans
getGoldAnnotations(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventSpans
getGoldAnnotations(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfTimeSpans
getHead(TreebankNode) - Static method in class org.apache.ctakes.constituency.parser.util.AnnotationTreeUtils
getHead(TreebankNode) - Static method in class org.apache.ctakes.coreference.util.MarkableTreeUtils
getHead() - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode: getter for head - gets
getHead(int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
getHeadIndex() - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode: getter for headIndex - gets The head index tracks the index into the word tokens which is the syntactic head of a phrase.
getHeadIndex(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
getHeadWord(String) - Static method in class org.apache.ctakes.relationextractor.ae.features.WordNetUtils: A simple way to get the head word of a phrase.
getHIstory(JCas, IdentifiedAnnotation) - Static method in class org.apache.ctakes.assertion.attributes.history.HistoryAttributeClassifier
getHistoryOf() - Static method in class org.apache.ctakes.core.util.SHARPKnowtatorXMLDefaults
getHistoryOf() - Method in class org.apache.ctakes.typesystem.type.refsem.Element: getter for historyOf - gets
getHistoryOf(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
getHistoryOf() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation: getter for historyOf - gets
getHistoryOf(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
getHitDictionaryValue() - Method in class org.apache.ctakes.padtermspotter.type.PADLocation: getter for hitDictionaryValue - gets Value from the Dictionary that was successfully looked up
getHitDictionaryValue(int) - Method in class org.apache.ctakes.padtermspotter.type.PADLocation_Type
getHitDictionaryValue() - Method in class org.apache.ctakes.padtermspotter.type.PADTerm: getter for hitDictionaryValue - gets Value from the Dictionary that was successfully looked up
getHitDictionaryValue(int) - Method in class org.apache.ctakes.padtermspotter.type.PADTerm_Type
getHyperHypernyms(IDictionary, String, String, boolean) - Static method in class org.apache.ctakes.relationextractor.ae.features.WordNetUtils
getHypernyms(IDictionary, String, String, boolean) - Static method in class org.apache.ctakes.relationextractor.ae.features.WordNetUtils: Retrieve a set of hypernyms for a word.
getId() - Method in class org.apache.ctakes.coreference.type.Markable: getter for id - gets
getId(int) - Method in class org.apache.ctakes.coreference.type.Markable_Type
getId() - Method in class org.apache.ctakes.typesystem.type.refsem.Element: getter for id - gets
getId(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
getId() - Method in class org.apache.ctakes.typesystem.type.relation.Relation: getter for id - gets
getId(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
getId() - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument: getter for id - gets
getId(int) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument_Type
getId() - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode: getter for id - gets The token's position in the sentence.
getId(int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
getId() - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation: getter for id - gets
getId(int) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type
getId() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation: getter for id - gets
getId(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
getId() - Method in class org.apache.ctakes.typesystem.type.textspan.List: getter for id - gets
getId(int) - Method in class org.apache.ctakes.typesystem.type.textspan.List_Type
getId() - Method in class org.apache.ctakes.typesystem.type.textspan.Segment: getter for id - gets
getId(int) - Method in class org.apache.ctakes.typesystem.type.textspan.Segment_Type
getIndex() - Method in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode: getter for index - gets The index of this node in the top node's list of terminals.
getIndex(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode_Type
getIndexAfterLastNonDigit(String) - Static method in class org.apache.ctakes.core.util.DateParser
getIndexFirstNonLetter(String) - Static method in class org.apache.ctakes.core.util.DateParser
getIndexReader() - Method in interface org.apache.ctakes.core.resource.LuceneIndexReaderResource
getIndexReader() - Method in class org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl
getIndicated() - Method in class org.apache.ctakes.typesystem.type.textsem.ConditionalModifier: getter for indicated - gets
getIndicated(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ConditionalModifier_Type
getIndicated() - Method in class org.apache.ctakes.typesystem.type.textsem.GenericModifier: getter for indicated - gets
getIndicated(int) - Method in class org.apache.ctakes.typesystem.type.textsem.GenericModifier_Type
getIndicated() - Method in class org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier: getter for indicated - gets
getIndicated(int) - Method in class org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier_Type
getIndicated() - Method in class org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier: getter for indicated - gets
getIndicated(int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier_Type
getIndicated() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier: getter for indicated - gets
getIndicated(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier_Type
getIndicated() - Method in class org.apache.ctakes.typesystem.type.textsem.PolarityModifier: getter for indicated - gets
getIndicated(int) - Method in class org.apache.ctakes.typesystem.type.textsem.PolarityModifier_Type
getIndicated() - Method in class org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier: getter for indicated - gets
getIndicated(int) - Method in class org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier_Type
getInputDirectory() - Method in class org.mitre.medfacts.uima.RunZoner
getInputFiles() - Method in class org.mitre.medfacts.uima.RunZoner
getInstance() - Static method in enum org.apache.ctakes.dictionary.lookup.vo.LookupTokenComparator
getIntakeMethod() - Method in class org.apache.ctakes.drugner.type.RouteAnnotation: getter for intakeMethod - gets Means by which the drug was taken.
getIntakeMethod(int) - Method in class org.apache.ctakes.drugner.type.RouteAnnotation_Type
getIsStandAlone() - Method in class org.apache.ctakes.padtermspotter.type.PADLocation: getter for isStandAlone - gets Identifies weather this term needs another dictionary hit to be considered as a valid hit.
getIsStandAlone(int) - Method in class org.apache.ctakes.padtermspotter.type.PADLocation_Type
getIsStandAlone() - Method in class org.apache.ctakes.padtermspotter.type.PADTerm: getter for isStandAlone - gets Identifies weather this term needs another dictionary hit to be considered as a valid hit.
getIsStandAlone(int) - Method in class org.apache.ctakes.padtermspotter.type.PADTerm_Type
getItems() - Method in class org.apache.ctakes.typesystem.type.textspan.List: getter for items - gets
getItems(int) - Method in class org.apache.ctakes.typesystem.type.textspan.List_Type
getJcas() - Method in class org.apache.ctakes.assertion.medfacts.CasIndexer
getJcas() - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.ConstraintConstructor
getJcas() - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.SingleDocumentProcessorCtakes
getJCasViewWithDefault(CAS, String) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil: helper to look for plain text view for CDA processing or else use the default view.
getKey() - Method in class org.apache.ctakes.typesystem.type.syntax.Lemma: getter for key - gets
getKey(int) - Method in class org.apache.ctakes.typesystem.type.syntax.Lemma_Type
getKnowtatorURI(JCas) - Method in class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader: Get the URI for the Knowtator XML file that should be loaded
getKnowtatorURI(JCas) - Method in class org.apache.ctakes.temporal.ae.THYMEKnowtatorXMLReader
getKnowtatorXMLDirectory() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
getKnowtatorXMLDirectory() - Method in interface org.apache.ctakes.temporal.eval.PrintRelations.Options
getLabel() - Method in class org.apache.ctakes.assertion.zoner.types.Heading: getter for label - gets
getLabel(int) - Method in class org.apache.ctakes.assertion.zoner.types.Heading_Type
getLabel() - Method in class org.apache.ctakes.assertion.zoner.types.Subzone: getter for label - gets
getLabel(int) - Method in class org.apache.ctakes.assertion.zoner.types.Subzone_Type
getLabel() - Method in class org.apache.ctakes.assertion.zoner.types.Zone: getter for label - gets
getLabel(int) - Method in class org.apache.ctakes.assertion.zoner.types.Zone_Type
getLabel() - Method in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree: getter for label - gets
getLabel(int) - Method in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree_Type
getLabel() - Method in class org.apache.ctakes.coreference.type.BooleanLabeledFS: getter for label - gets
getLabel(int) - Method in class org.apache.ctakes.coreference.type.BooleanLabeledFS_Type
getLabel() - Method in class org.apache.ctakes.coreference.type.MarkablePair: getter for label - gets Is this pair coreferent?
getLabel(int) - Method in class org.apache.ctakes.coreference.type.MarkablePair_Type
getLabel() - Method in class org.apache.ctakes.typesystem.type.structured.DocumentClassification: getter for label - gets
getLabel(int) - Method in class org.apache.ctakes.typesystem.type.structured.DocumentClassification_Type
getLabel() - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument: getter for label - gets
getLabel(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type
getLabValue() - Method in class org.apache.ctakes.typesystem.type.refsem.Lab: getter for labValue - gets
getLabValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type
getLabValue() - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention: getter for labValue - gets
getLabValue(int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention_Type
getLastName() - Method in class org.apache.ctakes.typesystem.type.structured.Demographics: getter for lastName - gets
getLastName(int) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
getLastNameSoundex() - Method in class org.apache.ctakes.typesystem.type.structured.Demographics: getter for lastNameSoundex - gets
getLastNameSoundex(int) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
getLCA(TreebankNode, TreebankNode) - Static method in class org.apache.ctakes.constituency.parser.treekernel.TreeExtractor
getLeaf() - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode: getter for leaf - gets
getLeaf(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
getLeftScopeContextAnnotations(JCas, Annotation, Annotation) - Method in class org.apache.ctakes.necontexts.ContextAnnotator
getLeftSibProgeny(ConllDependencyNode, List<ConllDependencyNode>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
getLeftSibs(ConllDependencyNode, List<ConllDependencyNode>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
getLemma() - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode: getter for lemma - gets
getLemma(int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
getLemmaEntries() - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken: getter for lemmaEntries - gets
getLemmaEntries(int) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken_Type
getLenContractionToken(int, String) - Static method in class org.apache.ctakes.core.nlp.tokenizer.ContractionsPTB
getLength() - Method in class org.apache.ctakes.dictionary.lookup.ae.LookupAnnotationToJCasAdapter: Gets the length of this annotation based on offsets.
getLength() - Method in interface org.apache.ctakes.dictionary.lookup.vo.LookupAnnotation: Gets the length of this annotation based on offsets.
getLength() - Method in class org.apache.ctakes.dictionary.lookup.vo.LookupAnnotationToTokAdapter
getLengthIfNextApostIsMiddleOfContraction(int, int, String) - Static method in class org.apache.ctakes.core.nlp.tokenizer.ContractionsPTB: Determine if the text starting at 'position' within 'text' is the start of a contraction such as "should've" or "hasn't" or "it's" by looking at whether there is a letter before the apostrophe, and the appropriate letters after the apostrophe (or in the case of "n't", verify the letter before is an 'n' Note that if the text starting at 'position' is something like "n't" which isn't a complete word, returns null.
getLinearPermutations(List<Integer>) - Static method in class org.apache.ctakes.dictionary.lookup.algorithms.PermutationUtil: Gets a collection of lists, each list represents a single permutation.
getList() - Method in class org.apache.ctakes.temporal.eval.CommandLine.IntegerRanges
getLookupAlgorithm(DictionaryEngine) - Method in class org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl: Gets the LookupAlgorithm to be used to perform the lookup operations.
getLookupAlgorithm(DictionaryEngine) - Method in class org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl: Gets the LookupAlgorithm to be used to perform the lookup operations.
getLookupAlgorithm(DictionaryEngine) - Method in interface org.apache.ctakes.dictionary.lookup.ae.LookupInitializer: Gets the LookupAlgorithm to be used to perform the lookup operations.
getLookupAlgorithm() - Method in class org.apache.ctakes.dictionary.lookup.ae.LookupSpec
getLookupConsumer() - Method in class org.apache.ctakes.dictionary.lookup.ae.LookupSpec
getLookupInitializer() - Method in class org.apache.ctakes.dictionary.lookup.ae.LookupSpec
getLookupTokenIterator(JCas) - Method in class org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl: Gets an iteration of tokens that represent the finest grain used for a lookup operation.
getLookupTokenIterator(JCas) - Method in class org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl: Gets an iteration of tokens that represent the finest grain used for a lookup operation.
getLookupTokenIterator(JCas) - Method in interface org.apache.ctakes.dictionary.lookup.ae.LookupInitializer: Gets an iteration of tokens that represent the finest grain used for a lookup operation.
getLookupWindowIterator(JCas) - Method in class org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl: Gets an iteration of windows.
getLookupWindowIterator(JCas) - Method in class org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl: Gets an iteration of windows.
getLookupWindowIterator(JCas) - Method in interface org.apache.ctakes.dictionary.lookup.ae.LookupInitializer: Gets an iteration of windows.
getLvg() - Method in interface org.apache.ctakes.lvg.resource.LvgCmdApiResource
getLvg() - Method in class org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl: An LvgCmdApi takes a term from the input and returns a vector of strings.
getLvgLex() - Method in interface org.apache.ctakes.lvg.resource.LvgCmdApiResource
getLvgLex() - Method in class org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl: The thing to run through Lvg
getMap() - Method in interface org.apache.ctakes.core.resource.StringIntegerMapResource: Gets a map of the String/Integer values.
getMap() - Method in class org.apache.ctakes.core.resource.StringIntegerMapResourceImpl: Gets a map of the String/Integer values.
getMap() - Method in interface org.apache.ctakes.core.resource.StringMapResource: Gets a map of String/String values.
getMap() - Method in class org.apache.ctakes.core.resource.StringMapResourceImpl: Gets a map of the String/Integer values.
getMaxID() - Method in class org.apache.ctakes.coreference.eval.helpers.SpanAlignment
getMaxSizeList() - Static method in class org.apache.ctakes.dictionary.lookup.ae.LookupParseUtilities: Get the maximum list size to be returned from a lucene index
getMedicationAllergy() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention: getter for medicationAllergy - gets
getMedicationAllergy(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
getMedicationDosage() - Method in class org.apache.ctakes.typesystem.type.refsem.Medication: getter for medicationDosage - gets
getMedicationDosage(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
getMedicationDosage() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention: getter for medicationDosage - gets
getMedicationDosage(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
getMedicationDosage() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention: getter for medicationDosage - gets
getMedicationDosage(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
getMedicationDuration() - Method in class org.apache.ctakes.typesystem.type.refsem.Medication: getter for medicationDuration - gets
getMedicationDuration(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
getMedicationDuration() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention: getter for medicationDuration - gets
getMedicationDuration(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
getMedicationDuration() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention: getter for medicationDuration - gets
getMedicationDuration(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
getMedicationForm() - Method in class org.apache.ctakes.typesystem.type.refsem.Medication: getter for medicationForm - gets
getMedicationForm(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
getMedicationForm() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention: getter for medicationForm - gets
getMedicationForm(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
getMedicationForm() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention: getter for medicationForm - gets
getMedicationForm(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
getMedicationFrequency() - Method in class org.apache.ctakes.typesystem.type.refsem.Medication: getter for medicationFrequency - gets
getMedicationFrequency(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
getMedicationFrequency() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention: getter for medicationFrequency - gets
getMedicationFrequency(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
getMedicationFrequency() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention: getter for medicationFrequency - gets
getMedicationFrequency(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
getMedicationRoute() - Method in class org.apache.ctakes.typesystem.type.refsem.Medication: getter for medicationRoute - gets
getMedicationRoute(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
getMedicationRoute() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention: getter for medicationRoute - gets
getMedicationRoute(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
getMedicationRoute() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention: getter for medicationRoute - gets
getMedicationRoute(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
getMedicationStatusChange() - Method in class org.apache.ctakes.typesystem.type.refsem.Medication: getter for medicationStatusChange - gets
getMedicationStatusChange(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
getMedicationStatusChange() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention: getter for medicationStatusChange - gets
getMedicationStatusChange(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
getMedicationStatusChange() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention: getter for medicationStatusChange - gets
getMedicationStatusChange(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
getMedicationStrength() - Method in class org.apache.ctakes.typesystem.type.refsem.Medication: getter for medicationStrength - gets
getMedicationStrength(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
getMedicationStrength() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention: getter for medicationStrength - gets
getMedicationStrength(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
getMedicationStrength() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention: getter for medicationStrength - gets
getMedicationStrength(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
getMembers() - Method in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelation: getter for members - gets A super-type for relationships between multiple spans of text.
getMembers(int) - Method in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelation_Type
getMentions() - Method in class org.apache.ctakes.typesystem.type.refsem.Element: getter for mentions - gets
getMentions(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element: indexed getter for mentions - gets an indexed value -
getMentions(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
getMentions(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
getMetaData(Object) - Method in class org.apache.ctakes.necontexts.ContextHit
getMetaData() - Method in class org.apache.ctakes.preprocessor.DocumentMetaData: Gets a map of meta data about the document.
getMetaFieldNames() - Method in class org.apache.ctakes.dictionary.lookup.AbstractBaseDictionary: TODO - get rid of the using class iterators and use Collection foreach
getMetaFieldNames() - Method in class org.apache.ctakes.dictionary.lookup.BaseDictionaryImpl: Deprecated.
getMetaFieldNames() - Method in class org.apache.ctakes.dictionary.lookup.GenericMetaDataHitImpl
getMetaFieldNames() - Method in class org.apache.ctakes.dictionary.lookup.lucene.LuceneDocumentMetaDataHitImpl
getMetaFieldNames() - Method in interface org.apache.ctakes.dictionary.lookup.MetaDataHit
getMetaFieldNames() - Method in class org.apache.ctakes.dictionary.lookup.strtable.StringTableRowMetaDataHitImpl
getMetaFieldValue(String) - Method in class org.apache.ctakes.dictionary.lookup.GenericMetaDataHitImpl
getMetaFieldValue(String) - Method in class org.apache.ctakes.dictionary.lookup.lucene.LuceneDocumentMetaDataHitImpl
getMetaFieldValue(String) - Method in interface org.apache.ctakes.dictionary.lookup.MetaDataHit
getMetaFieldValue(String) - Method in class org.apache.ctakes.dictionary.lookup.strtable.StringTableRowMetaDataHitImpl
getMetaFieldValues() - Method in class org.apache.ctakes.dictionary.lookup.GenericMetaDataHitImpl
getMetaFieldValues() - Method in class org.apache.ctakes.dictionary.lookup.lucene.LuceneDocumentMetaDataHitImpl
getMetaFieldValues() - Method in interface org.apache.ctakes.dictionary.lookup.MetaDataHit
getMetaFieldValues() - Method in class org.apache.ctakes.dictionary.lookup.strtable.StringTableRowMetaDataHitImpl
getMethod() - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure: getter for method - gets
getMethod(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
getMethod() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention: getter for method - gets
getMethod(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
getMiddleName() - Method in class org.apache.ctakes.typesystem.type.structured.Demographics: getter for middleName - gets
getMiddleName(int) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
getMiddleScopeContextAnnotations(JCas, Annotation) - Method in class org.apache.ctakes.necontexts.ContextAnnotator
getModel() - Method in interface org.apache.ctakes.core.resource.MaxentModelResource: Gets a Maxent Model.
getModel() - Method in class org.apache.ctakes.core.resource.SuffixMaxentModelResourceImpl
getModifierTypeId(String) - Static method in class org.apache.ctakes.relationextractor.cr.Mapper: Map modifier type to its integer id.
getMonth() - Method in class org.apache.ctakes.typesystem.type.refsem.Date: getter for month - gets
getMonth(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Date_Type
getNames() - Method in class org.apache.ctakes.dictionary.lookup.strtable.StringTableRow
getNECorefFeatures() - Static method in class org.apache.ctakes.coreference.util.FeatureVector
getNewEndOffset() - Method in class org.apache.ctakes.core.ci.TextModification
getNewStartOffset() - Method in class org.apache.ctakes.core.ci.TextModification
getNewText() - Method in class org.apache.ctakes.core.ci.TextModification
getNext(CAS) - Method in class org.apache.ctakes.assertion.cr.I2B2Challenge2010CollectionReader
getNext(CAS) - Method in class org.apache.ctakes.assertion.cr.XmiCollectionReaderCtakes
getNext(JCas) - Method in class org.apache.ctakes.assertion.eval.XMIReader
getNext(CAS) - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads
getNext(CAS) - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader
getNext(CAS) - Method in class org.apache.ctakes.core.cr.JdbcCollectionReader
getNext(CAS) - Method in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader
getNext(CAS) - Method in class org.apache.ctakes.core.cr.XmiCollectionReaderCtakes
getNext(JCas) - Method in class org.apache.ctakes.core.cr.XMIReader
getNext(JCas) - Method in class org.apache.ctakes.dependency.parser.ae.util.XMIReader
getNext(CAS) - Method in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader: Some of the code in this method is based loosely on opennlp.tools.postag.POSEventCollector
getNext(CAS) - Method in class org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader
getNext(CAS) - Method in class org.apache.ctakes.postagger.OpenNLPPOSCollectionReader: Some of the code in this method is based loosely on opennlp.tools.postag.POSEventCollector
getNext(JCas) - Method in class org.apache.ctakes.relationextractor.eval.XMIReader
getNGrams() - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
getNodeFeatures(Markable, Markable, JCas) - Method in class org.apache.ctakes.coreference.util.SvmVectorCreator
getNodeFeatures(Markable, Markable, JCas, boolean) - Method in class org.apache.ctakes.coreference.util.SvmVectorCreator
getNodeList(TopTreebankNode) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils
getNodeList(Parse) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils
getNodes(String) - Static method in class org.apache.ctakes.coreference.util.SvmUtils
getNodeTags() - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode: getter for nodeTags - gets
getNodeTags(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode: indexed getter for nodeTags - gets an indexed value -
getNodeTags(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
getNodeTags(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
getNodeType() - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode: getter for nodeType - gets
getNodeType(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
getNodeValue() - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode: getter for nodeValue - gets
getNodeValue(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
getNominalHeadNode(JCas, Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility: Returns the first ConllDependencyNode in the CAS w/ same begin and end as the given Annotation
getNominalHeadNode(List<ConllDependencyNode>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility: Finds the head node out of a few ConllDependencyNodes.
getNominalValue() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue: getter for nominalValue - gets
getNominalValue(int) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue_Type
getNormalizedForm() - Method in class org.apache.ctakes.typesystem.type.refsem.Time: getter for normalizedForm - gets
getNormalizedForm(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Time_Type
getNormalizedForm() - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken: getter for normalizedForm - gets
getNormalizedForm(int) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken_Type
getNormalizedForm() - Method in class org.apache.ctakes.typesystem.type.textsem.Modifier: getter for normalizedForm - gets
getNormalizedForm(int) - Method in class org.apache.ctakes.typesystem.type.textsem.Modifier_Type
getNoteSubTypeCode() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData: getter for noteSubTypeCode - gets
getNoteSubTypeCode(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
getNoteTypeCode() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData: getter for noteTypeCode - gets
getNoteTypeCode(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
getNounPhrases(JCas, Sentence) - Static method in class org.apache.ctakes.relationextractor.ae.baselines.Utils: Get all noun phrases in a sentence.
getNumber() - Method in class org.apache.ctakes.typesystem.type.refsem.LabValue: getter for number - gets
getNumber(int) - Method in class org.apache.ctakes.typesystem.type.refsem.LabValue_Type
getNumber() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency: getter for number - gets
getNumber(int) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency_Type
getNumber() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength: getter for number - gets
getNumber(int) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength_Type
getNumberOfDocuments() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads: Gets the total number of documents that will be returned by this collection reader.
getNumberOfDocuments() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader: Gets the total number of documents that will be returned by this collection reader.
getNumberOfDocuments() - Method in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader: Gets the total number of documents that will be returned by this collection reader.
getNumberOfDocuments() - Method in class org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader: Gets the total number of documents that will be returned by this collection reader.
getNumDemFeats() - Static method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
getNumericValue() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NumericAttributeValue: getter for numericValue - gets
getNumericValue(int) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NumericAttributeValue_Type
getNumNEFeats() - Static method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
getNumOfWordTokensInSpan(JCas, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil: return the number of words except for "and" "or" in span
getNumOfWordTokensInSpanExceptGivenNE(JCas, int, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil: return the number of words in span except for "and" "or" and given NE
getNumPosition() - Method in class org.apache.ctakes.core.fsm.adapters.WordTokenAdapter
getNumPosition() - Method in class org.apache.ctakes.core.fsm.token.adapter.WordTokenAdapter
getNumPosition() - Method in interface org.apache.ctakes.core.fsm.token.WordToken
getNumPosition() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token: Gets the position of a number inside a Token.
getNumPosition() - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken: getter for numPosition - gets
getNumPosition(int) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken_Type
getNumPronFeats() - Static method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
getNumType() - Method in class org.apache.ctakes.typesystem.type.syntax.NumToken: getter for numType - gets
getNumType(int) - Method in class org.apache.ctakes.typesystem.type.syntax.NumToken_Type
getOid() - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept: getter for oid - gets
getOid(int) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type
getOntologyConcept() - Method in class org.apache.ctakes.typesystem.type.refsem.Element: getter for ontologyConcept - gets
getOntologyConcept(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
getOntologyConceptArr() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation: getter for ontologyConceptArr - gets
getOntologyConceptArr(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation: indexed getter for ontologyConceptArr - gets an indexed value -
getOntologyConceptArr(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
getOntologyConceptArr(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
getOrdinalInterpretation() - Method in class org.apache.ctakes.typesystem.type.refsem.Lab: getter for ordinalInterpretation - gets
getOrdinalInterpretation(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type
getOrdinalInterpretation() - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention: getter for ordinalInterpretation - gets
getOrdinalInterpretation(int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention_Type
getOrigEndOffset() - Method in class org.apache.ctakes.core.ci.TextModification
getOriginalEntityExternalId() - Method in class org.apache.ctakes.assertion.medfacts.types.Concept: getter for originalEntityExternalId - gets
getOriginalEntityExternalId(int) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept_Type
getOrigStartOffset() - Method in class org.apache.ctakes.core.ci.TextModification
getOui() - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept: getter for oui - gets holds the rxnorm unique identifier for a given drug mention.
getOui(int) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type
getOutputDirectory() - Method in class org.mitre.medfacts.uima.RunZoner
getOutputXml() - Method in interface org.apache.ctakes.core.cc.NonTerminalConsumer: Gets the generated output from a CasConsumer in XML form.
getOutputXml() - Method in class org.apache.ctakes.padtermspotter.cc.PADOffSetsRecord: Used by any end-user program to get the processed data
getOutputXml() - Method in class org.apache.ctakes.padtermspotter.cc.RadialogyTermLookup: Used by the web service to get the result
getP1() - Method in class org.apache.ctakes.coreference.type.Pair: getter for p1 - gets
getP1(int) - Method in class org.apache.ctakes.coreference.type.Pair_Type
getP2() - Method in class org.apache.ctakes.coreference.type.Pair: getter for p2 - gets
getP2(int) - Method in class org.apache.ctakes.coreference.type.Pair_Type
getPairs() - Method in class org.apache.ctakes.typesystem.type.util.Pairs: getter for pairs - gets
getPairs(int) - Method in class org.apache.ctakes.typesystem.type.util.Pairs: indexed getter for pairs - gets an indexed value -
getPairs(int) - Method in class org.apache.ctakes.typesystem.type.util.Pairs_Type
getPairs(int, int) - Method in class org.apache.ctakes.typesystem.type.util.Pairs_Type
getParent() - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode: getter for parent - gets
getParent(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
getParentSectionId() - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation: getter for parentSectionId - gets The section in which the subsection was found.
getParentSectionId(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
getParentSectionId() - Method in class org.apache.ctakes.padtermspotter.type.SubSection: getter for parentSectionId - gets
getParentSectionId(int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection_Type
getParseString(FSIterator) - Method in class org.apache.ctakes.constituency.parser.MaxentParserWrapper
getParseString(FSIterator) - Method in interface org.apache.ctakes.constituency.parser.ParserWrapper
getParticipatesIn() - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument: getter for participatesIn - gets
getParticipatesIn(int) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument_Type
getPartOfSpeech() - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken: getter for partOfSpeech - gets
getPartOfSpeech(int) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken_Type
getPath(List<ConllDependencyNode>, ConllDependencyNode, ConllDependencyNode) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility: Given a set of ConllDependencyNodes, find the path between two nodes
getPath(JCas, ConllDependencyNode, ConllDependencyNode) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility: Given a CAS, find the path between two nodes in a sentence
getPathBetweenNodes(ConllDependencyNode, ConllDependencyNode) - Static method in class org.apache.ctakes.relationextractor.ae.features.DependencyParseUtils: Finds the path between two dependency nodes
getPathLength() - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
getPathsToCommonAncestor(ConllDependencyNode, ConllDependencyNode) - Static method in class org.apache.ctakes.relationextractor.ae.features.DependencyParseUtils: Returns the paths from each node to the common ancestor between them
getPathToSentenceHead(ConllDependencyNode) - Static method in class org.apache.ctakes.relationextractor.ae.features.DependencyParseUtils
getPathToTop(JCas, ConllDependencyNode) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
getPatientID() - Method in class org.apache.ctakes.typesystem.type.structured.Metadata: getter for patientID - gets
getPatientID(int) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type
getPatients() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
getPatients() - Method in interface org.apache.ctakes.temporal.eval.PrintRelations.Options
getPatients() - Method in interface org.apache.ctakes.temporal.utils.RunCorpusDiagnostics.Options
getPdeprel() - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode: getter for pdeprel - gets
getPdeprel(int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
getPeriod() - Method in class org.apache.ctakes.drugner.type.FrequencyUnitAnnotation: getter for period - gets The periodic unit used, e.g day, month, hour, etc.
getPeriod(int) - Method in class org.apache.ctakes.drugner.type.FrequencyUnitAnnotation_Type
getPermanence() - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties: getter for permanence - gets
getPermanence(int) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
getPermutationList(int) - Static method in class org.apache.ctakes.dictionary.lookup.algorithms.PermutationUtil: Gets all permutations for the given level and all sub-levels.
getPhead() - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode: getter for phead - gets
getPhead(int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
getPhrases(List) - Method in interface org.apache.ctakes.dictionary.lookup.phrasebuilder.PhraseBuilder: Given a list of LookupTokens, one or more phrases are built.
getPhrases(List) - Method in class org.apache.ctakes.dictionary.lookup.phrasebuilder.VariantPhraseBuilderImpl
getPlaintextAggregateBuilder() - Static method in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors: Builds the plaintext prepreprocessing pipeline for ClearNLP
getPolarity() - Method in class org.apache.ctakes.typesystem.type.refsem.Element: getter for polarity - gets
getPolarity(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
getPolarity() - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties: getter for polarity - gets
getPolarity(int) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
getPolarity() - Method in class org.apache.ctakes.typesystem.type.relation.Relation: getter for polarity - gets
getPolarity(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
getPolarity() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation: getter for polarity - gets
getPolarity(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
getPosition(XcasAnnotation) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasFile: Returns the line and column numbers of the specified XcasAnnotation.
getPositionOther(XcasAnnotation) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasFile: Finds an XcasAnnotation with the same attributes as specified, and returns its line and column numbers.
getPositionOwn(XcasAnnotation) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasFile: Returns the line and column numbers of the specified XcasAnnotation, which is included in this XcasFile object.
getPositionOwn(int) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasFile: Returns the line and column numbers of the XcasAnnotation, specified by the original XCAS internal _id field.
getPositions(String) - Method in class org.apache.ctakes.core.sentence.EndOfSentenceScannerImpl
getPositions(StringBuffer) - Method in class org.apache.ctakes.core.sentence.EndOfSentenceScannerImpl
getPositions(char[]) - Method in class org.apache.ctakes.core.sentence.EndOfSentenceScannerImpl
getPositionSimilar(XcasAnnotation) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasFile: Finds an XcasAnnotation of the same type as specified, and a same text span, then returns its line and column number.
getPositive() - Method in class org.apache.ctakes.core.fsm.adapters.NumberTokenAdapter
getPositive() - Method in class org.apache.ctakes.core.fsm.token.adapter.NumberTokenAdapter
getPositive() - Method in interface org.apache.ctakes.core.fsm.token.NumberToken
getPostag() - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode: getter for postag - gets
getPostag(int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
getPosTag() - Method in class org.apache.ctakes.typesystem.type.syntax.Lemma: getter for posTag - gets
getPosTag(int) - Method in class org.apache.ctakes.typesystem.type.syntax.Lemma_Type
getPredicate() - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation: getter for predicate - gets
getPredicate(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type
getPreprocessorAggregateBuilder() - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
getPrimaryAssociatedCodeElement() - Method in class org.apache.ctakes.drugner.DrugMention
getPrimaryAssociatedCodeElement() - Method in interface org.apache.ctakes.drugner.DrugModel
getPrintErrors() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
getProbabilityOfKeepingANegativeExample() - Method in interface org.apache.ctakes.temporal.eval.EvaluationOfEventSpans.Options
getProcedureDevice() - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure: getter for procedureDevice - gets
getProcedureDevice(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
getProcedureDevice() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention: getter for procedureDevice - gets
getProcedureDevice(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
getProgeny(ConllDependencyNode, List<ConllDependencyNode>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
getProgeny(List<ConllDependencyNode>, List<ConllDependencyNode>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
getProgress() - Method in class org.apache.ctakes.assertion.cr.I2B2Challenge2010CollectionReader
getProgress() - Method in class org.apache.ctakes.assertion.cr.XmiCollectionReaderCtakes
getProgress() - Method in class org.apache.ctakes.assertion.eval.XMIReader
getProgress() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads
getProgress() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader
getProgress() - Method in class org.apache.ctakes.core.cr.JdbcCollectionReader
getProgress() - Method in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader
getProgress() - Method in class org.apache.ctakes.core.cr.XmiCollectionReaderCtakes
getProgress() - Method in class org.apache.ctakes.core.cr.XMIReader
getProgress() - Method in class org.apache.ctakes.dependency.parser.ae.util.XMIReader
getProgress() - Method in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader
getProgress() - Method in class org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader
getProgress() - Method in class org.apache.ctakes.postagger.OpenNLPPOSCollectionReader
getProgress() - Method in class org.apache.ctakes.relationextractor.eval.XMIReader
getPronCorefFeatures() - Static method in class org.apache.ctakes.coreference.util.FeatureVector
getProperties() - Method in class org.apache.ctakes.typesystem.type.refsem.Event: getter for properties - gets
getProperties(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Event_Type
getProviderID() - Method in class org.apache.ctakes.typesystem.type.structured.Metadata: getter for providerID - gets
getProviderID(int) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata: indexed getter for providerID - gets an indexed value -
getProviderID(int) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type
getProviderID(int, int) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type
getPseSen() - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature: getter for pseSen - gets
getPseSen(int) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature_Type
getRawTextDirectory() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
getRawTextDirectory() - Method in interface org.apache.ctakes.temporal.eval.PrintRelations.Options
getRawTextDirectory() - Method in interface org.apache.ctakes.temporal.utils.RunCorpusDiagnostics.Options
getReadableFile(String) - Static method in class org.apache.ctakes.core.ae.SentenceDetector
getReason() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for reason - gets
getReason(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: indexed getter for reason - gets an indexed value -
getReason(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getReason(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getRecordID() - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence: getter for recordID - gets ID of record that this sentence belongs to.
getRecordID(int) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type
getRecordID() - Method in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification: getter for recordID - gets Represents the document record id
getRecordID(int) - Method in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification_Type
getRecordTextBegin() - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence: getter for recordTextBegin - gets Begin offset of the sentence relative to the entire record text.
getRecordTextBegin(int) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type
getRecordTextEnd() - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence: getter for recordTextEnd - gets End offset of the sentence relative to the entire record text.
getRecordTextEnd(int) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type
getReference(String) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation: Returns the referenced XcasAnnotations of the specified attribute.
getReferenceRangeNarrative() - Method in class org.apache.ctakes.typesystem.type.refsem.Lab: getter for referenceRangeNarrative - gets
getReferenceRangeNarrative(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type
getReferenceRangeNarrative() - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention: getter for referenceRangeNarrative - gets
getReferenceRangeNarrative(int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention_Type
getRelatedTokens() - Method in class org.apache.ctakes.padtermspotter.type.PADLocation: getter for relatedTokens - gets identifies the token that this PADTerm spans
getRelatedTokens(int) - Method in class org.apache.ctakes.padtermspotter.type.PADLocation: indexed getter for relatedTokens - gets an indexed value - identifies the token that this PADTerm spans
getRelatedTokens(int) - Method in class org.apache.ctakes.padtermspotter.type.PADLocation_Type
getRelatedTokens(int, int) - Method in class org.apache.ctakes.padtermspotter.type.PADLocation_Type
getRelatedTokens() - Method in class org.apache.ctakes.padtermspotter.type.PADTerm: getter for relatedTokens - gets identifies the token that this PADTerm spans
getRelatedTokens(int) - Method in class org.apache.ctakes.padtermspotter.type.PADTerm: indexed getter for relatedTokens - gets an indexed value - identifies the token that this PADTerm spans
getRelatedTokens(int) - Method in class org.apache.ctakes.padtermspotter.type.PADTerm_Type
getRelatedTokens(int, int) - Method in class org.apache.ctakes.padtermspotter.type.PADTerm_Type
getRelation() - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument: getter for relation - gets
getRelation(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type
getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.EntityMentionPairRelationExtractorAnnotator
getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator: Looks up the arguments in the specified lookup table and converts the relation into a label for classification
getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.EventTimeRelationAnnotator
getRelations(Document) - Static method in class org.apache.ctakes.assertion.cr.XMLReader
getRelations(Document) - Static method in class org.apache.ctakes.relationextractor.knowtator.XMLReader
getRelations() - Method in class org.apache.ctakes.typesystem.type.textsem.Predicate: getter for relations - gets
getRelations(int) - Method in class org.apache.ctakes.typesystem.type.textsem.Predicate_Type
getRelationStats(String) - Static method in class org.apache.ctakes.relationextractor.data.Stats
getRelativeTemporalContext() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder: getter for relativeTemporalContext - gets
getRelativeTemporalContext(int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
getRelativeTemporalContext() - Method in class org.apache.ctakes.typesystem.type.refsem.Medication: getter for relativeTemporalContext - gets
getRelativeTemporalContext(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
getRelativeTemporalContext() - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure: getter for relativeTemporalContext - gets
getRelativeTemporalContext(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
getRelativeTemporalContext() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom: getter for relativeTemporalContext - gets
getRelativeTemporalContext(int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
getRelativeTemporalContext() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention: getter for relativeTemporalContext - gets
getRelativeTemporalContext(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
getRelativeTemporalContext() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention: getter for relativeTemporalContext - gets
getRelativeTemporalContext(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
getRelativeTemporalContext() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention: getter for relativeTemporalContext - gets
getRelativeTemporalContext(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
getRelativeTemporalContext() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention: getter for relativeTemporalContext - gets
getRelativeTemporalContext(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
getResult() - Method in class org.apache.ctakes.temporal.ae.feature.CoveredTextToValuesExtractor.StringToDoublesProcessor
getResult() - Method in class org.apache.ctakes.temporal.ae.feature.IdentifiedAnnotationFeatureExtractor.StringToDoublesProcessor
getRightScopeContextAnnotations(JCas, Annotation, Annotation) - Method in class org.apache.ctakes.necontexts.ContextAnnotator
getRightSibProgeny(ConllDependencyNode, List<ConllDependencyNode>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
getRightSibs(ConllDependencyNode, List<ConllDependencyNode>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
getRole() - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument: getter for role - gets
getRole(int) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument_Type
getRoot(TreebankNode) - Static method in class org.apache.ctakes.constituency.parser.util.AnnotationTreeUtils
getRoot(TreebankNode) - Static method in class org.apache.ctakes.coreference.util.MarkableTreeUtils
getRoute() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for route - gets Medication route refers to the way that a drug is introduced into the body.
getRoute(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getRouteBegin() - Method in class org.apache.ctakes.drugner.DrugMention
getRouteBegin() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for routeBegin - gets
getRouteBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getRouteElement() - Method in class org.apache.ctakes.drugner.DrugMention
getRouteElement() - Method in interface org.apache.ctakes.drugner.DrugModel
getRouteEnd() - Method in class org.apache.ctakes.drugner.DrugMention
getRouteEnd() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for routeEnd - gets
getRouteEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getRouteMention() - Method in class org.apache.ctakes.drugner.elements.RouteElement
getRowNum() - Method in class org.apache.ctakes.coreference.treekernel.training.RowFillerThread
getRows(String, String) - Method in class org.apache.ctakes.dictionary.lookup.strtable.StringTable
getScope() - Method in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation: getter for Scope - gets
getScope(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation_Type
getScopeContextAnnotations(JCas, Annotation, Annotation, int) - Method in class org.apache.ctakes.necontexts.ContextAnnotator
getScoreFunction(MutualInformationFeatureSelection.CombineScoreMethod) - Method in class org.apache.ctakes.temporal.ae.feature.selection.MutualInformationFeatureSelection.MutualInformationStats
getSecondaryAssociatedCodeElement() - Method in class org.apache.ctakes.drugner.DrugMention
getSecondaryAssociatedCodeElement() - Method in interface org.apache.ctakes.drugner.DrugModel
getSectionName() - Method in class org.apache.ctakes.core.util.DocumentSection
getSegment(String) - Method in class org.apache.ctakes.preprocessor.DocumentMetaData: Gets meta data about the specified segment.
getSegmentID(JCas, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil: Return segmentID contain the given span
getSegmentID() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation: getter for segmentID - gets
getSegmentID(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
getSegmentId() - Method in class org.apache.ctakes.typesystem.type.textspan.Sentence: getter for segmentId - gets
getSegmentId(int) - Method in class org.apache.ctakes.typesystem.type.textspan.Sentence_Type
getSegmentIdContaining(Annotation, JCas) - Method in class org.apache.ctakes.padtermspotter.impl.PADConsumerImpl
getSegmentIdentifiers() - Method in class org.apache.ctakes.preprocessor.DocumentMetaData: Gets a set of segment identifiers.
getSegmentIDOfSpan(JCas, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil: Return segmentID of the sentence containing the given span
getSentence(FSArray) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils
getSentence(JCas, Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility: Find the sentence in which an Annotation lives
getSentence() - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation: getter for sentence - gets sentence containing side effect
getSentence(int) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation_Type
getSentenceDistance() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
getSentenceID() - Method in class org.apache.ctakes.drugner.type.ChunkAnnotation: getter for sentenceID - gets
getSentenceID(int) - Method in class org.apache.ctakes.drugner.type.ChunkAnnotation_Type
getSentenceID() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation: getter for sentenceID - gets contains the sentence id of the sentence that contains the NE's text span
getSentenceID(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
getSentenceNumber() - Method in class org.apache.ctakes.typesystem.type.textspan.Sentence: getter for sentenceNumber - gets
getSentenceNumber(int) - Method in class org.apache.ctakes.typesystem.type.textspan.Sentence_Type
getSentenceNumContainingGivenSpan(JCas, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil: Return sentenceNumber of the sentence containing the given span
getSentenceProbabilities() - Method in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes: Returns the probabilities associated with the most recent calls to sentDetect().
getSentenceSpanContainingGivenSpan(JCas, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil: Return sentence span containing the span (begin & end)
getSentenceSpanOfGivenSentenceNum(JCas, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil: Return sentence span of the given sentence number
getSentenceTextContainingGivenSpan(JCas, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil: Return sentence text containing the span (begin & end)
getSeverity() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom: getter for severity - gets
getSeverity(int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
getSeverity() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention: getter for severity - gets
getSeverity(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
getSeverity() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention: getter for severity - gets
getSeverity(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
getSideEffect() - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation: getter for sideEffect - gets side effect mention in NamedEntity
getSideEffect(int) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation_Type
getSimpleClone(TreebankNode) - Static method in class org.apache.ctakes.constituency.parser.treekernel.TreeExtractor
getSize() - Method in class org.apache.ctakes.coreference.util.ParentPtrTree
getSMOTENeighborNumber() - Method in interface org.apache.ctakes.temporal.eval.EvaluationOfEventSpans.Options
getSnomedCodes(String) - Method in class org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedConsumerImpl: Searches for the Snomed codes that are synonyms of the UMLS concept with CUI umlsCode
getSnomedCodes(String) - Method in class org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedDbConsumerImpl: Queries the given UMLS CUI against the DB.
getSnomedCodes(String) - Method in class org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedLuceneConsumerImpl: Find all Snomed codes that map to the given UMLS code (CUI), by looking in a lucene index
getSortedLookupTokens(JCas, Annotation) - Method in class org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl: Gets a list of tokens that we promise to return in sorted order that are constrained by the input annotation.
getSortedLookupTokens(JCas, Annotation) - Method in class org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl: Gets a list of tokens that we promise to return in sorted order that are constrained by the input annotation.
getSortedLookupTokens(JCas, Annotation) - Method in interface org.apache.ctakes.dictionary.lookup.ae.LookupInitializer: Gets a list of tokens that we promise to return in sorted order that are constrained by the input annotation.
getSourceApplication() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData: getter for sourceApplication - gets
getSourceApplication(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
getSourceData() - Method in class org.apache.ctakes.typesystem.type.structured.Metadata: getter for sourceData - gets
getSourceData(int) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type
getSourceEncounterId() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData: getter for sourceEncounterId - gets
getSourceEncounterId(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
getSourceInstanceId() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData: getter for sourceInstanceId - gets
getSourceInstanceId(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
getSourceInstitution() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData: getter for sourceInstitution - gets
getSourceInstitution(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
getSourceOriginalDate() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData: getter for sourceOriginalDate - gets
getSourceOriginalDate(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
getSourceRevisionDate() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData: getter for sourceRevisionDate - gets
getSourceRevisionDate(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
getSourceRevisionNbr() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData: getter for sourceRevisionNbr - gets
getSourceRevisionNbr(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
getStart() - Method in class org.apache.ctakes.core.sentence.SentenceSpan
getStartDate() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for startDate - gets
getStartDate(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getStartDate() - Method in class org.apache.ctakes.typesystem.type.refsem.Medication: getter for startDate - gets
getStartDate(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
getStartDate() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention: getter for startDate - gets
getStartDate(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
getStartDate() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention: getter for startDate - gets
getStartDate(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
getStartDateElement() - Method in class org.apache.ctakes.drugner.DrugMention
getStartDateElement() - Method in interface org.apache.ctakes.drugner.DrugModel
getStartLine() - Method in class org.apache.ctakes.core.util.DocumentSection
getStartOffset() - Method in class org.apache.ctakes.core.fsm.adapters.BaseTokenAdapter
getStartOffset() - Method in class org.apache.ctakes.core.fsm.output.BaseTokenImpl
getStartOffset() - Method in class org.apache.ctakes.core.fsm.token.adapter.BaseTokenAdapter
getStartOffset() - Method in interface org.apache.ctakes.core.fsm.token.BaseToken
getStartOffset() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token: Gets the start offset.
getStartOffset() - Method in class org.apache.ctakes.dictionary.lookup.ae.LookupAnnotationToJCasAdapter: Gets the start offset.
getStartOffset() - Method in interface org.apache.ctakes.dictionary.lookup.vo.LookupAnnotation: Gets the start offset.
getStartOffset() - Method in class org.apache.ctakes.dictionary.lookup.vo.LookupAnnotationToTokAdapter
getStartOffset() - Method in class org.apache.ctakes.dictionary.lookup.vo.LookupHit
getStartOffset() - Method in class org.apache.ctakes.drugner.fsm.output.elements.BaseTokenImpl
getStartTime() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder: getter for startTime - gets
getStartTime(int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
getStartTime() - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure: getter for startTime - gets
getStartTime(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
getStartTime() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom: getter for startTime - gets
getStartTime(int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
getStartTime() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention: getter for startTime - gets
getStartTime(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
getStartTime() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention: getter for startTime - gets
getStartTime(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
getStartTime() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention: getter for startTime - gets
getStartTime(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
getStatus() - Method in class org.apache.ctakes.core.fsm.output.StatusIndicator
getStatus() - Method in class org.apache.ctakes.drugner.fsm.output.util.SubSectionIndicator
getStatus() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for status - gets
getStatus(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getStatus() - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation: getter for status - gets Status of 'possible', 'history of', or 'family history of'.
getStatus(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
getStatus() - Method in class org.apache.ctakes.padtermspotter.fsm.output.IllnessDxIndicator
getStatus() - Method in class org.apache.ctakes.padtermspotter.fsm.output.SubSectionIndicator
getStatus() - Method in class org.apache.ctakes.padtermspotter.type.SubSection: getter for status - gets
getStatus(int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection_Type
getStems(String, String, IDictionary) - Static method in class org.apache.ctakes.relationextractor.ae.features.WordNetUtils: Get a list of possible stems.
getStrength() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for strength - gets
getStrength(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getStrengthBegin() - Method in class org.apache.ctakes.drugner.DrugMention
getStrengthBegin() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for strengthBegin - gets
getStrengthBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getStrengthElement() - Method in class org.apache.ctakes.drugner.DrugMention
getStrengthElement() - Method in interface org.apache.ctakes.drugner.DrugModel
getStrengthEnd() - Method in class org.apache.ctakes.drugner.DrugMention
getStrengthEnd() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for strengthEnd - gets
getStrengthEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getStrengthMention() - Method in class org.apache.ctakes.drugner.elements.StrengthElement
getStrengthMention() - Method in class org.apache.ctakes.drugner.elements.StrengthUnitElement
getStrengthUnit() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for strengthUnit - gets
getStrengthUnit(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getStrengthUnitBegin() - Method in class org.apache.ctakes.drugner.DrugMention
getStrengthUnitElement() - Method in class org.apache.ctakes.drugner.DrugMention
getStrengthUnitElement() - Method in interface org.apache.ctakes.drugner.DrugModel
getStrengthUnitEnd() - Method in class org.apache.ctakes.drugner.DrugMention
getString(String[], int) - Static method in class org.apache.ctakes.utils.build.BuildPipelinePears
getString(String[], int) - Static method in class org.apache.ctakes.utils.build.InstallPearSilently
getString(String[], int) - Static method in class org.apache.ctakes.utils.build.InstallPipelineFromPears
getStringAttribute(String) - Method in class org.apache.ctakes.dictionary.lookup.ae.LookupAnnotationToJCasAdapter: Gets an attribute.
getStringAttribute(String) - Method in interface org.apache.ctakes.dictionary.lookup.vo.LookupAnnotation: Gets an attribute.
getStringAttribute(String) - Method in class org.apache.ctakes.dictionary.lookup.vo.LookupAnnotationToTokAdapter
getStringParameterValuesMap(String, UimaContext, String) - Static method in class org.apache.ctakes.core.util.ParamUtil
getStringParameterValuesSet(String, UimaContext) - Static method in class org.apache.ctakes.core.util.ParamUtil
getStrings() - Method in class org.apache.ctakes.core.resource.LinesFromFileStringsResourceImpl
getStrings() - Method in interface org.apache.ctakes.core.resource.StringsResource
getSuBegin() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for suBegin - gets
getSuBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getSubject(JCas, IdentifiedAnnotation) - Static method in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier
getSubject() - Static method in class org.apache.ctakes.core.util.SHARPKnowtatorXMLDefaults
getSubject() - Method in class org.apache.ctakes.typesystem.type.refsem.Element: getter for subject - gets
getSubject(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
getSubject() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation: getter for subject - gets
getSubject(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
getSubSectionBodyBegin() - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation: getter for subSectionBodyBegin - gets Sub-section body begin offset.
getSubSectionBodyBegin(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
getSubSectionBodyBegin() - Method in class org.apache.ctakes.padtermspotter.type.SubSection: getter for subSectionBodyBegin - gets
getSubSectionBodyBegin(int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection_Type
getSubSectionBodyEnd() - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation: getter for subSectionBodyEnd - gets Sub-section body end offset.
getSubSectionBodyEnd(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
getSubSectionBodyEnd() - Method in class org.apache.ctakes.padtermspotter.type.SubSection: getter for subSectionBodyEnd - gets
getSubSectionBodyEnd(int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection_Type
getSubSectionHeaderBegin() - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation: getter for subSectionHeaderBegin - gets Begin offset of subSection header
getSubSectionHeaderBegin(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
getSubSectionHeaderBegin() - Method in class org.apache.ctakes.padtermspotter.type.SubSection: getter for subSectionHeaderBegin - gets
getSubSectionHeaderBegin(int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection_Type
getSubSectionHeaderEnd() - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation: getter for subSectionHeaderEnd - gets Ending offset of subsection header
getSubSectionHeaderEnd(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
getSubSectionHeaderEnd() - Method in class org.apache.ctakes.padtermspotter.type.SubSection: getter for subSectionHeaderEnd - gets
getSubSectionHeaderEnd(int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection_Type
getSubSectionStatus(Annotation, JCas, int) - Method in class org.apache.ctakes.padtermspotter.impl.PADConsumerImpl
getSuEnd() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation: getter for suEnd - gets
getSuEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
getSuggestion() - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken: getter for suggestion - gets
getSuggestion(int) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken_Type
getSurroundingTree(TreebankNode) - Static method in class org.apache.ctakes.constituency.parser.treekernel.TreeExtractor
getSurroundingTreeWithAnnotation(TreebankNode, String) - Static method in class org.apache.ctakes.constituency.parser.treekernel.TreeExtractor
getSynonyms(IDictionary, String, String, boolean) - Static method in class org.apache.ctakes.relationextractor.ae.features.WordNetUtils: Retrieve a set of synonyms for a word.
getSystemAnnotations(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfAnnotationSpans_ImplBase
getSystemAnnotations(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKEventSpans
getSystemAnnotations(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKTimeSpans
getSystemAnnotations(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventSpans
getSystemAnnotations(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfTimeSpans
getTermFreqVectors(String) - Method in class org.apache.ctakes.utils.wiki.WikiIndex
getTerminals(JCas, Sentence) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils
getTerminals() - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode: getter for terminals - gets Stores the terminal nodes of the parse tree.
getTerminals(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode: indexed getter for terminals - gets an indexed value - Stores the terminal nodes of the parse tree.
getTerminals(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type
getTerminals(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type
getTestPatientSets(List<Integer>) - Static method in class org.apache.ctakes.temporal.eval.THYMEData
getText() - Method in class org.apache.ctakes.core.fsm.adapters.TextTokenAdapter
getText() - Method in class org.apache.ctakes.core.fsm.token.adapter.WordTokenAdapter
getText() - Method in interface org.apache.ctakes.core.fsm.token.TextToken
getText() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
getText() - Method in class org.apache.ctakes.core.sentence.SentenceSpan
getText() - Method in class org.apache.ctakes.dictionary.lookup.ae.LookupAnnotationToJCasAdapter: Gets the text.
getText(LookupToken) - Method in class org.apache.ctakes.dictionary.lookup.phrasebuilder.VariantPhraseBuilderImpl.AttributeTextImpl
getText(LookupToken) - Method in class org.apache.ctakes.dictionary.lookup.phrasebuilder.VariantPhraseBuilderImpl.OriginalTextImpl
getText() - Method in interface org.apache.ctakes.dictionary.lookup.vo.LookupAnnotation: Gets the text.
getText() - Method in class org.apache.ctakes.dictionary.lookup.vo.LookupAnnotationToTokAdapter
getText() - Method in class org.apache.ctakes.preprocessor.DocumentMetaData
getTextMention() - Method in class org.apache.ctakes.drugner.elements.TextMentionElement
getTextURI(JCas) - Method in class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader: Get the URI that the text in this class was loaded from
getTextURI(JCas) - Method in class org.apache.ctakes.temporal.ae.THYMEKnowtatorXMLReader
getTime() - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention: getter for time - gets
getTime(int) - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention_Type
getTimeClass() - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention: getter for timeClass - gets DATE, DURATION, QUANTIFIER, PREPOSTEXP, etc.
getTimeClass(int) - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention_Type
getTokenData(JCas, Annotation) - Method in class org.apache.ctakes.padtermspotter.impl.PADConsumerImpl
getTokenIndex() - Method in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode: getter for tokenIndex - gets The tokenIndex of a terminal is n, where the terminal is the nth token in a sentence.
getTokenIndex(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode_Type
getTokenizedAggregateBuilder() - Static method in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors: Builds the tokenized preprocessing pipeline for ClearNLP
getTokenizedInfPosAggregateBuilder() - Static method in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors: Builds the tokenizedInf preprocessing for ClearNLP
getTokenNumber() - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken: getter for tokenNumber - gets
getTokenNumber(int) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken_Type
getTopNode(TreebankNode) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils
getTrainPatientSets(List<Integer>) - Static method in class org.apache.ctakes.temporal.eval.THYMEData
getTree() - Method in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree: getter for tree - gets
getTree(int) - Method in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree_Type
getTreebankDirectory() - Method in interface org.apache.ctakes.temporal.utils.RunCorpusDiagnostics.Options
getTreebankParse() - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode: getter for treebankParse - gets A bracketed sentence string representing the parse tree.
getTreebankParse(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type
getTreeCopy(JCas, TopTreebankNode) - Static method in class org.apache.ctakes.constituency.parser.util.AnnotationTreeUtils
getTreeCopy(JCas, TreebankNode) - Static method in class org.apache.ctakes.constituency.parser.util.AnnotationTreeUtils
getTui() - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept: getter for tui - gets
getTui(int) - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept_Type
getType() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token: Gets the type of the token.
getType(String) - Static method in class org.apache.ctakes.core.util.JCasUtil
getType(Class<? extends TOP>) - Static method in class org.apache.ctakes.core.util.JCasUtil
getType(String) - Static method in class org.apache.ctakes.padtermspotter.util.JCasUtil
getType(Class<? extends TOP>) - Static method in class org.apache.ctakes.padtermspotter.util.JCasUtil
getType() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
getTypeID() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation: getter for typeID - gets The type of named entity (e.g.
getTypeID(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
getTypeIndexID() - Method in class org.apache.ctakes.assertion.medfacts.types.Assertion
getTypeIndexID() - Method in class org.apache.ctakes.assertion.medfacts.types.Concept
getTypeIndexID() - Method in class org.apache.ctakes.assertion.zoner.types.Heading
getTypeIndexID() - Method in class org.apache.ctakes.assertion.zoner.types.Subzone
getTypeIndexID() - Method in class org.apache.ctakes.assertion.zoner.types.Zone
getTypeIndexID() - Method in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree
getTypeIndexID() - Method in class org.apache.ctakes.coreference.type.BooleanLabeledFS
getTypeIndexID() - Method in class org.apache.ctakes.coreference.type.DemMarkable
getTypeIndexID() - Method in class org.apache.ctakes.coreference.type.Markable
getTypeIndexID() - Method in class org.apache.ctakes.coreference.type.MarkablePair
getTypeIndexID() - Method in class org.apache.ctakes.coreference.type.MarkablePairSet
getTypeIndexID() - Method in class org.apache.ctakes.coreference.type.NEMarkable
getTypeIndexID() - Method in class org.apache.ctakes.coreference.type.Pair
getTypeIndexID() - Method in class org.apache.ctakes.coreference.type.PronounMarkable
getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.ChunkAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.DecimalStrengthAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.DosagesAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.DurationAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.FormAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.FractionStrengthAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.FrequencyAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.FrequencyUnitAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.RangeStrengthAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.RouteAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.StrengthAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.StrengthUnitAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.SuffixStrengthAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.padtermspotter.type.PADHit
getTypeIndexID() - Method in class org.apache.ctakes.padtermspotter.type.PADLocation
getTypeIndexID() - Method in class org.apache.ctakes.padtermspotter.type.PADTerm
getTypeIndexID() - Method in class org.apache.ctakes.padtermspotter.type.SubSection
getTypeIndexID() - Method in class org.apache.ctakes.sideeffect.type.PSESentence
getTypeIndexID() - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature
getTypeIndexID() - Method in class org.apache.ctakes.sideeffect.type.SESentence
getTypeIndexID() - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence
getTypeIndexID() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.AttributeValue
getTypeIndexID() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue
getTypeIndexID() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID
getTypeIndexID() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue
getTypeIndexID() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NumericAttributeValue
getTypeIndexID() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue
getTypeIndexID() - Method in class org.apache.ctakes.smokingstatus.type.NonSmokerNamedEntityAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification
getTypeIndexID() - Method in class org.apache.ctakes.smokingstatus.type.UnknownSmokerNamedEntityAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.Attribute
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.BodyLaterality
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.BodySide
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.Course
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.Date
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.Element
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.Entity
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.Event
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.Lab
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.LabValue
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDosage
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDuration
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationForm
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationRoute
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.Severity
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.Time
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.Affects
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.AffectsTextRelation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.AspectualTextRelation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.AttributeRelation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.CoreferenceRelation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.DegreeOf
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.ElementRelation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.LocationOf
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.ManifestationOf
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.ManifestationOfTextRelation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.Relation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.ResultOf
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.ResultOfTextRelation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.TemporalRelation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.TemporalTextRelation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.UMLSRelation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.structured.DocumentClassification
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.structured.DocumentID
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.structured.Metadata
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.ADJP
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.ADVP
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.Chunk
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.CONJP
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.ContractionToken
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.INTJ
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.Lemma
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.LST
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.NewlineToken
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.NP
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.NumToken
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.O
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.PP
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.PRT
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.PunctuationToken
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.SBAR
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.StanfordDependency
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.SymbolToken
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.UCP
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.VP
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.BodySideModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.ConditionalModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.CourseModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.DateAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.EntityMention
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.EventMention
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.FractionAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.GenericModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.LabValueModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.Modifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.PolarityModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.Predicate
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.RangeAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.SeverityModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.SubjectModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.TimeAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textspan.List
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textspan.Paragraph
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textspan.Segment
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textspan.Sentence
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.util.Pair
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.util.Pairs
getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.util.ProbabilityDistribution
getUaLocation() - Method in class org.apache.ctakes.padtermspotter.type.PADHit: getter for uaLocation - gets
getUaLocation(int) - Method in class org.apache.ctakes.padtermspotter.type.PADHit_Type
getUaTerm() - Method in class org.apache.ctakes.padtermspotter.type.PADHit: getter for uaTerm - gets
getUaTerm(int) - Method in class org.apache.ctakes.padtermspotter.type.PADHit_Type
getUncertainty() - Method in class org.apache.ctakes.typesystem.type.refsem.Element: getter for uncertainty - gets
getUncertainty(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
getUncertainty() - Method in class org.apache.ctakes.typesystem.type.relation.Relation: getter for uncertainty - gets
getUncertainty(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
getUncertainty() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation: getter for uncertainty - gets
getUncertainty(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
getUniqueKey() - Method in class org.apache.ctakes.dictionary.lookup.vo.LookupHit: Generates a unique key based on this objects values.
getUnit() - Method in class org.apache.ctakes.typesystem.type.refsem.LabValue: getter for unit - gets
getUnit(int) - Method in class org.apache.ctakes.typesystem.type.refsem.LabValue_Type
getUnit() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency: getter for unit - gets The periodic unit used, e.g day, month, hour, etc.
getUnit(int) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency_Type
getUnit() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength: getter for unit - gets the unit of measurement
getUnit(int) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength_Type
getUsage() - Static method in class org.apache.ctakes.dictionary.assertion.CreateAssertionLuceneIndexFromDelimitedFile
getValue() - Method in class org.apache.ctakes.core.fsm.adapters.DecimalTokenAdapter
getValue() - Method in class org.apache.ctakes.core.fsm.adapters.IntegerTokenAdapter
getValue() - Method in class org.apache.ctakes.core.fsm.token.adapter.DecimalTokenAdapter
getValue() - Method in class org.apache.ctakes.core.fsm.token.adapter.IntegerTokenAdapter
getValue() - Method in interface org.apache.ctakes.core.fsm.token.DecimalToken
getValue() - Method in interface org.apache.ctakes.core.fsm.token.IntegerToken
getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.BodyLaterality: getter for value - gets
getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.BodyLaterality_Type
getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.BodySide: getter for value - gets
getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.BodySide_Type
getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.Course: getter for value - gets
getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Course_Type
getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag: getter for value - gets
getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag_Type
getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange: getter for value - gets
getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange_Type
getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDosage: getter for value - gets
getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDosage_Type
getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDuration: getter for value - gets
getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDuration_Type
getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationForm: getter for value - gets
getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationForm_Type
getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationRoute: getter for value - gets
getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationRoute_Type
getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange: getter for value - gets Indicates the change status of 'stop', 'start', 'increase', 'decrease', or 'noChange'.
getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange_Type
getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice: getter for value - gets
getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice_Type
getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod: getter for value - gets
getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod_Type
getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.Severity: getter for value - gets
getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Severity_Type
getValue() - Method in class org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier: getter for value - gets
getValue(int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier_Type
getValue() - Method in class org.apache.ctakes.typesystem.type.textsem.SubjectModifier: getter for value - gets
getValue(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SubjectModifier_Type
getValue() - Method in class org.apache.ctakes.typesystem.type.util.Pair: getter for value - gets
getValue(int) - Method in class org.apache.ctakes.typesystem.type.util.Pair_Type
getValueAsDouble() - Method in class org.apache.ctakes.core.fsm.adapters.IntegerTokenAdapter
getValueAsDouble() - Method in class org.apache.ctakes.core.fsm.token.adapter.IntegerTokenAdapter
getValues() - Method in class org.apache.ctakes.dictionary.lookup.strtable.StringTableRow
getWordTokenLen() - Method in class org.apache.ctakes.core.nlp.tokenizer.ContractionResult
getXMIDirectory() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
getXMIDirectory() - Method in interface org.apache.ctakes.temporal.utils.RunCorpusDiagnostics.Options
getXMIFile(File, File) - Static method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
getXMIFile(File, JCas) - Static method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
getXMIReadingPreprocessorAggregateBuilder() - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
getXMIWritingPreprocessorAggregateBuilder() - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
getYear() - Method in class org.apache.ctakes.typesystem.type.refsem.Date: getter for year - gets
getYear(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Date_Type
GOLD_VIEW_NAME - Static variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation
GOLD_VIEW_NAME - Static variable in class org.apache.ctakes.relationextractor.eval.PrintRelationStatistics
GOLD_VIEW_NAME - Static variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation
GOLD_VIEW_NAME - Static variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
GoldAnnotationAnalysisPipeline - Class in org.apache.ctakes.relationextractor.data: Pipeline for analyzing gold annotations.
GoldAnnotationAnalysisPipeline() - Constructor for class org.apache.ctakes.relationextractor.data.GoldAnnotationAnalysisPipeline
GoldAnnotationAnalysisPipeline.Options - Class in org.apache.ctakes.relationextractor.data
GoldAnnotationAnalysisPipeline.Options() - Constructor for class org.apache.ctakes.relationextractor.data.GoldAnnotationAnalysisPipeline.Options
GoldAnnotationStatsCalculator - Class in org.apache.ctakes.relationextractor.data: Count various stats such as token and relation counts based on the gold standard data.
GoldAnnotationStatsCalculator() - Constructor for class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator
GoldEntityAndAttributeReader - Class in org.apache.ctakes.assertion.cr: Read named entity annotations from knowtator xml files into the CAS
GoldEntityAndAttributeReader() - Constructor for class org.apache.ctakes.assertion.cr.GoldEntityAndAttributeReader
GoldEntityAndAttributeReaderPipeline - Class in org.apache.ctakes.assertion.pipelines: A class for testing the reader for the gold standard relation data.
GoldEntityAndAttributeReaderPipeline() - Constructor for class org.apache.ctakes.assertion.pipelines.GoldEntityAndAttributeReaderPipeline
GoldEntityAndAttributeReaderPipelineForSeedCorpus - Class in org.apache.ctakes.assertion.pipelines: A class for testing the reader for the gold standard relation data.
GoldEntityAndAttributeReaderPipelineForSeedCorpus() - Constructor for class org.apache.ctakes.assertion.pipelines.GoldEntityAndAttributeReaderPipelineForSeedCorpus
GoldEntityAndRelationReader - Class in org.apache.ctakes.relationextractor.cr: Read named entity annotations and relations between them from knowtator xml files into the CAS.
GoldEntityAndRelationReader() - Constructor for class org.apache.ctakes.relationextractor.cr.GoldEntityAndRelationReader
GoldEntityAndRelationReaderPipeline - Class in org.apache.ctakes.relationextractor.pipelines: A class for testing the reader for the gold standard relation data.
GoldEntityAndRelationReaderPipeline() - Constructor for class org.apache.ctakes.relationextractor.pipelines.GoldEntityAndRelationReaderPipeline
GoldEntityReader - Class in org.apache.ctakes.relationextractor.cr: Read named entity annotations from knowtator xml files into the CAS
GoldEntityReader() - Constructor for class org.apache.ctakes.relationextractor.cr.GoldEntityReader
goldEqvCls - Variable in class org.apache.ctakes.coreference.util.GoldStandardLabeler
goldId2AlignId - Variable in class org.apache.ctakes.coreference.util.GoldStandardLabeler
goldSpan2id - Variable in class org.apache.ctakes.coreference.util.GoldStandardLabeler
goldSpans - Variable in class org.apache.ctakes.coreference.util.GoldStandardLabeler
GoldStandardLabeler - Class in org.apache.ctakes.coreference.util
GoldStandardLabeler(String, String, List<Annotation>) - Constructor for class org.apache.ctakes.coreference.util.GoldStandardLabeler
goldViewName - Variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
goldViewName - Static variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator
goWords - Variable in class org.apache.ctakes.smokingstatus.ae.PcsClassifierAnnotator_libsvm
gridSearch - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.Options
GT_OP - Static variable in interface org.apache.ctakes.dictionary.lookup.MetaDataHitConst
GT_OP - Static variable in class org.apache.ctakes.dictionary.lookup.strtable.FieldConstraintImpl
GTEQ_OP - Static variable in interface org.apache.ctakes.dictionary.lookup.MetaDataHitConst
GTEQ_OP - Static variable in class org.apache.ctakes.dictionary.lookup.strtable.FieldConstraintImpl

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