A B C D E F G H I J K L M N O P Q R S T U V W X Z _

D

DAILY - Static variable in class org.apache.ctakes.drugner.elements.FrequencyUnitElement

dataWriterFactoryClass - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.CreateAssertionDescriptor

Date - Class in org.apache.ctakes.typesystem.type.refsem

A normalized form for dates, namely with day, month, and year.

Date() - Constructor for class org.apache.ctakes.typesystem.type.refsem.Date

Never called.

Date(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Date

Internal - constructor used by generator

Date(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Date

Date_Type - Class in org.apache.ctakes.typesystem.type.refsem

A normalized form for dates, namely with day, month, and year.

Date_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Date_Type

initialize variables to correspond with Cas Type and Features

DateAnnotation - Class in org.apache.ctakes.typesystem.type.textsem

Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.DateAnnotation Updated by JCasGen Tue Apr 09 12:44:04 EDT 2013 XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml

DateAnnotation() - Constructor for class org.apache.ctakes.typesystem.type.textsem.DateAnnotation

Never called.

DateAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.DateAnnotation

Internal - constructor used by generator

DateAnnotation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.DateAnnotation

DateAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.DateAnnotation

DateAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem

Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.DateAnnotation Updated by JCasGen Tue Apr 09 12:44:04 EDT 2013

DateAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.DateAnnotation_Type

initialize variables to correspond with Cas Type and Features

DateAttributeValue - Class in org.apache.ctakes.smokingstatus.type.libsvm

Updated by JCasGen Tue Apr 09 12:43:45 EDT 2013 XML source: trunk/ctakes-smoking-status-res/src/main/resources/org/apache/ctakes/smokingstatus/types/TypeSystem.xml

DateAttributeValue() - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue

Never called.

DateAttributeValue(int, TOP_Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue

Internal - constructor used by generator

DateAttributeValue(JCas) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue

DateAttributeValue(JCas, int, int) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue

DateAttributeValue_Type - Class in org.apache.ctakes.smokingstatus.type.libsvm

Updated by JCasGen Tue Apr 09 12:43:45 EDT 2013

DateAttributeValue_Type(JCas, Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue_Type

initialize variables to correspond with Cas Type and Features

DateFSM - Class in org.apache.ctakes.core.fsm.machine

Uses one or more finite state machines to detect dates in the given input of tokens.

DateFSM() - Constructor for class org.apache.ctakes.core.fsm.machine.DateFSM

Constructor

DateParser - Class in org.apache.ctakes.core.util

DateParser() - Constructor for class org.apache.ctakes.core.util.DateParser

DateToken - Class in org.apache.ctakes.core.fsm.output

DateToken(int, int) - Constructor for class org.apache.ctakes.core.fsm.output.DateToken

DayNightWordCondition - Class in org.apache.ctakes.core.fsm.condition

Handles case of A.M.

DayNightWordCondition() - Constructor for class org.apache.ctakes.core.fsm.condition.DayNightWordCondition

debugAnnotationsInCas(JCas, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine

DebugConsumerImpl - Class in org.apache.ctakes.dictionary.lookup.ae

LookupConsumer implementation that outputs debug info to the log about each LookupHit.

DebugConsumerImpl(UimaContext, Properties) - Constructor for class org.apache.ctakes.dictionary.lookup.ae.DebugConsumerImpl

DecimalCondition - Class in org.apache.ctakes.core.fsm.condition

DecimalCondition() - Constructor for class org.apache.ctakes.core.fsm.condition.DecimalCondition

DecimalRangeCondition - Class in org.apache.ctakes.core.fsm.condition

DecimalRangeCondition(double, double) - Constructor for class org.apache.ctakes.core.fsm.condition.DecimalRangeCondition

DecimalStrengthAnnotation - Class in org.apache.ctakes.drugner.type

The decimal portion of dosages stength determination for the Drug NER profile.

DecimalStrengthAnnotation() - Constructor for class org.apache.ctakes.drugner.type.DecimalStrengthAnnotation

Never called.

DecimalStrengthAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.DecimalStrengthAnnotation

Internal - constructor used by generator

DecimalStrengthAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.DecimalStrengthAnnotation

DecimalStrengthAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.DecimalStrengthAnnotation

DecimalStrengthAnnotation_Type - Class in org.apache.ctakes.drugner.type

The decimal portion of dosages stength determination for the Drug NER profile.

DecimalStrengthAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.DecimalStrengthAnnotation_Type

initialize variables to correspond with Cas Type and Features

DecimalStrengthFSM - Class in org.apache.ctakes.drugner.fsm.machines.elements

Uses one or more finite state machines to detect decimal fractions in the given input of tokens.

DecimalStrengthFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.elements.DecimalStrengthFSM

Constructor

DecimalStrengthStatusCondition - Class in org.apache.ctakes.drugner.fsm.elements.conditions

Checks whether a token is a FractionToken.

DecimalStrengthStatusCondition() - Constructor for class org.apache.ctakes.drugner.fsm.elements.conditions.DecimalStrengthStatusCondition

DecimalStrengthToken - Class in org.apache.ctakes.drugner.fsm.output.util

DecimalStrengthToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.util.DecimalStrengthToken

DecimalToken - Interface in org.apache.ctakes.core.fsm.token

DecimalTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters

Adapts JCas token annotation to interface expected by the Context Dependent Tokenizer.

DecimalTokenAdapter(NumToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.DecimalTokenAdapter

DecimalTokenAdapter - Class in org.apache.ctakes.core.fsm.token.adapter

DecimalTokenAdapter(Token) - Constructor for class org.apache.ctakes.core.fsm.token.adapter.DecimalTokenAdapter

DecimalValueCondition - Class in org.apache.ctakes.core.fsm.condition

DecimalValueCondition(double) - Constructor for class org.apache.ctakes.core.fsm.condition.DecimalValueCondition

DECREASE - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken

DECREASE_STATUS - Static variable in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement

DECREASEFROM - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken

DEFAULT_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE

DEFAULT_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPPOSTaggerAE

DEFAULT_PRED_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

DEFAULT_ROLE_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

DEFAULT_SRL_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

DefaultChunkCreator - Class in org.apache.ctakes.chunker.ae

This chunker creator simply creates annotations of type edu.mayo.bmi.chunker.type.Chunk and sets the chunkType feature of the annotation to the passed in parameter chunkType.

DefaultChunkCreator() - Constructor for class org.apache.ctakes.chunker.ae.DefaultChunkCreator

defaultIndexPath - Static variable in class org.apache.ctakes.utils.wiki.WikiIndex

defaultMaxHits - Static variable in class org.apache.ctakes.utils.wiki.WikiIndex

defaultModel - Static variable in class org.apache.ctakes.constituency.parser.ae.ConstituencyParser

defaultSearchField - Static variable in class org.apache.ctakes.utils.wiki.WikiIndex

DegreeOf - Class in org.apache.ctakes.typesystem.type.relation

A UMLS relation between an attribute and an entity/event.

DegreeOf() - Constructor for class org.apache.ctakes.typesystem.type.relation.DegreeOf

Never called.

DegreeOf(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.DegreeOf

Internal - constructor used by generator

DegreeOf(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.DegreeOf

DegreeOf_Type - Class in org.apache.ctakes.typesystem.type.relation

A UMLS relation between an attribute and an entity/event.

DegreeOf_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.DegreeOf_Type

initialize variables to correspond with Cas Type and Features

DegreeOfRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae

Identifies Degree_Of relation between entities and modifiers

DegreeOfRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.DegreeOfRelationExtractorAnnotator

DegreeOfTextRelation - Class in org.apache.ctakes.typesystem.type.relation

Updated by JCasGen Tue Apr 09 12:44:02 EDT 2013 XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml

DegreeOfTextRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation

Never called.

DegreeOfTextRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation

Internal - constructor used by generator

DegreeOfTextRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation

DegreeOfTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation

Updated by JCasGen Tue Apr 09 12:44:02 EDT 2013

DegreeOfTextRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation_Type

initialize variables to correspond with Cas Type and Features

Delim - Class in org.apache.ctakes.dependency.parser.util

Delim() - Constructor for class org.apache.ctakes.dependency.parser.util.Delim

DEM - Static variable in class org.apache.ctakes.coreference.util.CorefConsts

dem_coref_feats - Static variable in class org.apache.ctakes.coreference.util.FeatureVector

demFeatSet - Static variable in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator

DemMarkable - Class in org.apache.ctakes.coreference.type

Updated by JCasGen Tue Apr 09 12:45:20 EDT 2013 XML source: trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml

DemMarkable() - Constructor for class org.apache.ctakes.coreference.type.DemMarkable

Never called.

DemMarkable(int, TOP_Type) - Constructor for class org.apache.ctakes.coreference.type.DemMarkable

Internal - constructor used by generator

DemMarkable(JCas) - Constructor for class org.apache.ctakes.coreference.type.DemMarkable

DemMarkable(JCas, int, int) - Constructor for class org.apache.ctakes.coreference.type.DemMarkable

DemMarkable_Type - Class in org.apache.ctakes.coreference.type

Updated by JCasGen Tue Apr 09 12:45:20 EDT 2013

DemMarkable_Type(JCas, Type) - Constructor for class org.apache.ctakes.coreference.type.DemMarkable_Type

initialize variables to correspond with Cas Type and Features

Demographics - Class in org.apache.ctakes.typesystem.type.structured

Demographic information about the patient in a clinical document.

Demographics() - Constructor for class org.apache.ctakes.typesystem.type.structured.Demographics

Never called.

Demographics(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.Demographics

Internal - constructor used by generator

Demographics(JCas) - Constructor for class org.apache.ctakes.typesystem.type.structured.Demographics

Demographics_Type - Class in org.apache.ctakes.typesystem.type.structured

Demographic information about the patient in a clinical document.

Demographics_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.Demographics_Type

initialize variables to correspond with Cas Type and Features

DEP_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors

DEPENDENCY_FILE_PARAM - Static variable in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader

"DependencyFile" is a required, single, string parameter that specifies the location of a data file that contains dependency data in it.

DependencyFileCollectionReader - Class in org.apache.ctakes.dependency.parser.cr

This collection reader reads in dependency tree training/test data in a tab- delimited format.

DependencyFileCollectionReader() - Constructor for class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader

DependencyNodeWriter - Class in org.apache.ctakes.dependency.parser

CasConsumer that writes a JCas (the current view) to an xml file

DependencyNodeWriter() - Constructor for class org.apache.ctakes.dependency.parser.DependencyNodeWriter

DependencyParseUtils - Class in org.apache.ctakes.relationextractor.ae.features

DependencyParseUtils() - Constructor for class org.apache.ctakes.relationextractor.ae.features.DependencyParseUtils

DependencyPath - Class in org.apache.ctakes.dependency.parser.util

DependencyPath() - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyPath

DependencyPathFeaturesExtractor - Class in org.apache.ctakes.relationextractor.ae.features

DependencyPathFeaturesExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.DependencyPathFeaturesExtractor

DependencyTreeFeaturesExtractor - Class in org.apache.ctakes.relationextractor.ae.features

DependencyTreeFeaturesExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.DependencyTreeFeaturesExtractor

DependencyUtility - Class in org.apache.ctakes.dependency.parser.util

DependencyUtility() - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyUtility

depLca - Variable in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator

depModelFile - Variable in class org.apache.ctakes.dependency.parser.ae.util.TestClearNLPAnalysisEngines.Options

depPath - Variable in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator

description() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation

Returns a String representation of this object, including its type, and all attributes and references.

destroy() - Method in class org.apache.ctakes.padtermspotter.cc.RadialogyTermLookup

destroy() - Method in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries

devDirectory - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options

devDirectory - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.Options

DEVLOC - Variable in class org.apache.ctakes.relationextractor.data.Splitter

devSize - Variable in class org.apache.ctakes.relationextractor.data.Splitter

Dictionary - Interface in org.apache.ctakes.dictionary.lookup

DictionaryEngine - Class in org.apache.ctakes.dictionary.lookup

The engine adds additional functionality to executing a dictionary.

DictionaryEngine(Dictionary, boolean) - Constructor for class org.apache.ctakes.dictionary.lookup.DictionaryEngine

DictionaryException - Exception in org.apache.ctakes.dictionary.lookup

DictionaryException(Throwable) - Constructor for exception org.apache.ctakes.dictionary.lookup.DictionaryException

DictionaryLookupAnnotator - Class in org.apache.ctakes.dictionary.lookup.ae

UIMA annotator that identified entities based on lookup.

DictionaryLookupAnnotator() - Constructor for class org.apache.ctakes.dictionary.lookup.ae.DictionaryLookupAnnotator

differ(int, int) - Method in class org.apache.ctakes.coreference.util.ParentPtrTree

DirectLookupInitializerImpl - Class in org.apache.ctakes.dictionary.lookup.ae

DirectLookupInitializerImpl(UimaContext, Properties) - Constructor for class org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl

DirectPassThroughImpl - Class in org.apache.ctakes.dictionary.lookup.algorithms

Each individual LookupToken is referenced against a Dictionary.

DirectPassThroughImpl(DictionaryEngine, PhraseBuilder) - Constructor for class org.apache.ctakes.dictionary.lookup.algorithms.DirectPassThroughImpl

Constructor

DiseaseDisorder - Class in org.apache.ctakes.typesystem.type.refsem

This is an Event from the UMLS semantic group of Disorders (except that Sign and Symptom types are separate).

DiseaseDisorder() - Constructor for class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder

Never called.

DiseaseDisorder(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder

Internal - constructor used by generator

DiseaseDisorder(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder

DiseaseDisorder_Type - Class in org.apache.ctakes.typesystem.type.refsem

This is an Event from the UMLS semantic group of Disorders (except that Sign and Symptom types are separate).

DiseaseDisorder_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type

initialize variables to correspond with Cas Type and Features

DiseaseDisorderMention - Class in org.apache.ctakes.typesystem.type.textsem

A text string that refers to a (DiseaseDisorder) Event.

DiseaseDisorderMention() - Constructor for class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention

Never called.

DiseaseDisorderMention(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention

Internal - constructor used by generator

DiseaseDisorderMention(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention

DiseaseDisorderMention(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention

DiseaseDisorderMention_Type - Class in org.apache.ctakes.typesystem.type.textsem

A text string that refers to a (DiseaseDisorder) Event.

DiseaseDisorderMention_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type

initialize variables to correspond with Cas Type and Features

DisjoinCondition - Class in org.apache.ctakes.core.fsm.condition

DisjoinCondition(Condition, Condition) - Constructor for class org.apache.ctakes.core.fsm.condition.DisjoinCondition

displayContext - Variable in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorConsumer

displayEntities - Variable in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorConsumer

distance(String, String) - Static method in class org.apache.ctakes.coreference.util.EditDistance

distance(String, String, boolean) - Static method in class org.apache.ctakes.coreference.util.EditDistance

DISTANCE - Static variable in class org.apache.ctakes.drugner.ae.DrugMentionAnnotator

DISTANCE - Static variable in class org.apache.ctakes.padtermspotter.ae.PADHitAnnotator

Count of annotations defined by DISTANCE_ANN_TYPE between PADHitAnnotator.ANNOTATION_PART_ONE_OF_PAIR and PADHitAnnotator.ANNOTATION_PART_TWO_OF_PAIR

DISTANCE_ANN_TYPE - Static variable in class org.apache.ctakes.drugner.ae.DrugMentionAnnotator

Annotation type that is used to count the distance.

DISTANCE_ANN_TYPE - Static variable in class org.apache.ctakes.padtermspotter.ae.PADHitAnnotator

Annotation type that is used to count the distance.

DN_ARC_A - Static variable in class org.apache.ctakes.dependency.parser.util.Delim

DN_ARC_B - Static variable in class org.apache.ctakes.dependency.parser.util.Delim

docNum - Variable in class org.apache.ctakes.relationextractor.pipelines.TreeFeatureConsumer

docs - Variable in class org.apache.ctakes.assertion.cr.I2B2Challenge2010CollectionReader

DocTimeRelAnnotator - Class in org.apache.ctakes.temporal.ae

DocTimeRelAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.DocTimeRelAnnotator

DocumentClassification - Class in org.apache.ctakes.typesystem.type.structured

Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013 XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml

DocumentClassification() - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentClassification

Never called.

DocumentClassification(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentClassification

Internal - constructor used by generator

DocumentClassification(JCas) - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentClassification

DocumentClassification_Type - Class in org.apache.ctakes.typesystem.type.structured

Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013

DocumentClassification_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentClassification_Type

initialize variables to correspond with Cas Type and Features

DocumentID - Class in org.apache.ctakes.smokingstatus.type.libsvm

Updated by JCasGen Tue Apr 09 12:43:45 EDT 2013 XML source: trunk/ctakes-smoking-status-res/src/main/resources/org/apache/ctakes/smokingstatus/types/TypeSystem.xml

DocumentID() - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID

Never called.

DocumentID(int, TOP_Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID

Internal - constructor used by generator

DocumentID(JCas) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID

DocumentID(JCas, int, int) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID

DocumentID - Class in org.apache.ctakes.typesystem.type.structured

Equivalent to cTAKES: org.apache.ctakes.typesystem.type.DocumentID, but its supertype changed to uima.cas.TOP Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013 XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml

DocumentID() - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentID

Never called.

DocumentID(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentID

Internal - constructor used by generator

DocumentID(JCas) - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentID

DocumentID_Type - Class in org.apache.ctakes.smokingstatus.type.libsvm

Updated by JCasGen Tue Apr 09 12:43:45 EDT 2013

DocumentID_Type(JCas, Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID_Type

initialize variables to correspond with Cas Type and Features

DocumentID_Type - Class in org.apache.ctakes.typesystem.type.structured

Equivalent to cTAKES: org.apache.ctakes.typesystem.type.DocumentID, but its supertype changed to uima.cas.TOP Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013

DocumentID_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentID_Type

initialize variables to correspond with Cas Type and Features

DocumentIDAnnotationUtil - Class in org.apache.ctakes.core.util

DocumentIDAnnotationUtil() - Constructor for class org.apache.ctakes.core.util.DocumentIDAnnotationUtil

DocumentIdPrinterAnalysisEngine - Class in org.apache.ctakes.core.ae

DocumentIdPrinterAnalysisEngine() - Constructor for class org.apache.ctakes.core.ae.DocumentIdPrinterAnalysisEngine

DocumentMetaData - Class in org.apache.ctakes.preprocessor

DocumentMetaData() - Constructor for class org.apache.ctakes.preprocessor.DocumentMetaData

documentScore - Variable in class org.apache.ctakes.utils.wiki.SearchResult

DocumentSection - Class in org.apache.ctakes.core.util

Class containing relevant information for a given document section

DocumentSection(int, int, String) - Constructor for class org.apache.ctakes.core.util.DocumentSection

documentTitle - Variable in class org.apache.ctakes.utils.wiki.SearchResult

doesSubsume(Annotation, Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility

Checks if one annotation subsumes another

dominates(TreebankNode, TreebankNode) - Static method in class org.apache.ctakes.constituency.parser.util.AnnotationTreeUtils

DONOR_DEPPATH - Static variable in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier

DONOR_DEPTOK - Static variable in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier

DONOR_OR - Static variable in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier

DONOR_SRLARG - Static variable in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier

DONOR_TOKEN - Static variable in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier

dosage - Variable in class org.apache.ctakes.drugner.DrugMention

e.g.

DosageCondition - Class in org.apache.ctakes.drugner.fsm.elements.conditions

Checks whether a token is a DosageToken.

DosageCondition() - Constructor for class org.apache.ctakes.drugner.fsm.elements.conditions.DosageCondition

DosageElement - Class in org.apache.ctakes.drugner.elements

DosageElement() - Constructor for class org.apache.ctakes.drugner.elements.DosageElement

DosageElement(String, int, int) - Constructor for class org.apache.ctakes.drugner.elements.DosageElement

DosagesAnnotation - Class in org.apache.ctakes.drugner.type

The dosage determination for the Drug NER profile.

DosagesAnnotation() - Constructor for class org.apache.ctakes.drugner.type.DosagesAnnotation

Never called.

DosagesAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.DosagesAnnotation

Internal - constructor used by generator

DosagesAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.DosagesAnnotation

DosagesAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.DosagesAnnotation

DosagesAnnotation_Type - Class in org.apache.ctakes.drugner.type

The dosage determination for the Drug NER profile.

DosagesAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.DosagesAnnotation_Type

initialize variables to correspond with Cas Type and Features

DosagesFSM - Class in org.apache.ctakes.drugner.fsm.machines.elements

Uses one or more finite state machines to detect dosages in the given input of tokens.

DosagesFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.elements.DosagesFSM

Constructor

DosageToken - Class in org.apache.ctakes.drugner.fsm.output.elements

DosageToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.elements.DosageToken

dotProd(svm_node[], svm_node[]) - Static method in class org.apache.ctakes.utils.kernel.Kernel

DrugChangeStatusAnnotation - Class in org.apache.ctakes.drugner.type

The change status of dosages determination for the Drug NER profile.

DrugChangeStatusAnnotation() - Constructor for class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation

Never called.

DrugChangeStatusAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation

Internal - constructor used by generator

DrugChangeStatusAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation

DrugChangeStatusAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation

DrugChangeStatusAnnotation_Type - Class in org.apache.ctakes.drugner.type

The change status of dosages determination for the Drug NER profile.

DrugChangeStatusAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation_Type

initialize variables to correspond with Cas Type and Features

DrugChangeStatusCondition - Class in org.apache.ctakes.drugner.fsm.elements.conditions

Checks whether a token is a DrugChangeStatusToken.

DrugChangeStatusCondition() - Constructor for class org.apache.ctakes.drugner.fsm.elements.conditions.DrugChangeStatusCondition

DrugChangeStatusElement - Class in org.apache.ctakes.drugner.elements

DrugChangeStatusElement() - Constructor for class org.apache.ctakes.drugner.elements.DrugChangeStatusElement

DrugChangeStatusElement(String, int, int) - Constructor for class org.apache.ctakes.drugner.elements.DrugChangeStatusElement

DrugChangeStatusFSM - Class in org.apache.ctakes.drugner.fsm.machines.elements

Uses one or more finite state machines to detect change status data in the given input of tokens.

DrugChangeStatusFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM

Constructor

DrugChangeStatusToken - Class in org.apache.ctakes.drugner.fsm.output.elements

DrugChangeStatusToken(int, int, String) - Constructor for class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken

DrugLookupWindowAnnotation - Class in org.apache.ctakes.typesystem.type.textspan

Similar to LookupWindowAnnotation however, these annotations are restricted to the segments/sections specified in the parameter - sectionOverrideSet - in DrugCNP2LookupWindow Updated by JCasGen Tue Apr 09 12:44:10 EDT 2013 XML source: trunk/ctakes-drug-ner-res/src/main/resources/org/apache/ctakes/drugner/types/TypeSystem.xml

DrugLookupWindowAnnotation() - Constructor for class org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation

Never called.

DrugLookupWindowAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation

Internal - constructor used by generator

DrugLookupWindowAnnotation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation

DrugLookupWindowAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation

DrugLookupWindowAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textspan

Similar to LookupWindowAnnotation however, these annotations are restricted to the segments/sections specified in the parameter - sectionOverrideSet - in DrugCNP2LookupWindow Updated by JCasGen Tue Apr 09 12:44:10 EDT 2013

DrugLookupWindowAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation_Type

initialize variables to correspond with Cas Type and Features

DrugMention - Class in org.apache.ctakes.drugner

Contains information from a single document - is not the result of data mining.

DrugMention(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.DrugMention

DrugMentionAnnotation - Class in org.apache.ctakes.drugner.type

Updated by JCasGen Tue Apr 09 12:44:10 EDT 2013 XML source: trunk/ctakes-drug-ner-res/src/main/resources/org/apache/ctakes/drugner/types/TypeSystem.xml

DrugMentionAnnotation() - Constructor for class org.apache.ctakes.drugner.type.DrugMentionAnnotation

Never called.

DrugMentionAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.DrugMentionAnnotation

Internal - constructor used by generator

DrugMentionAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.DrugMentionAnnotation

DrugMentionAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.DrugMentionAnnotation

DrugMentionAnnotation_Type - Class in org.apache.ctakes.drugner.type

Updated by JCasGen Tue Apr 09 12:44:10 EDT 2013

DrugMentionAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

initialize variables to correspond with Cas Type and Features

DrugMentionAnnotator - Class in org.apache.ctakes.drugner.ae

Finds tokens based on context.

DrugMentionAnnotator() - Constructor for class org.apache.ctakes.drugner.ae.DrugMentionAnnotator

drugMentionText - Variable in class org.apache.ctakes.drugner.DrugMention

The word(s) in the note that indicate the drug.

DrugModel - Interface in org.apache.ctakes.drugner

DTDloader - Class in org.apache.ctakes.preprocessor

Use to load DTD from classpath.

DTDloader(File) - Constructor for class org.apache.ctakes.preprocessor.DTDloader

dumpCache() - Static method in class org.apache.ctakes.utils.wiki.ApproximateMath

dumpDependencyGraph(Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility

dumpDependencyRelations(JCas, Annotation) - Static method in class org.apache.ctakes.relationextractor.ae.features.DependencyParseUtils

dumpSRLOutput(Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.SRLUtility

duration - Variable in class org.apache.ctakes.drugner.DrugMention

e.g.

DurationAnnotation - Class in org.apache.ctakes.drugner.type

The duration determination for the Drug NER profile.

DurationAnnotation() - Constructor for class org.apache.ctakes.drugner.type.DurationAnnotation

Never called.

DurationAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.DurationAnnotation

Internal - constructor used by generator

DurationAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.DurationAnnotation

DurationAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.DurationAnnotation

DurationAnnotation_Type - Class in org.apache.ctakes.drugner.type

The duration determination for the Drug NER profile.

DurationAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.DurationAnnotation_Type

initialize variables to correspond with Cas Type and Features

DurationElement - Class in org.apache.ctakes.drugner.elements

DurationElement() - Constructor for class org.apache.ctakes.drugner.elements.DurationElement

DurationElement(String, int, int) - Constructor for class org.apache.ctakes.drugner.elements.DurationElement

DurationFSM - Class in org.apache.ctakes.drugner.fsm.machines.elements

Uses one or more finite state machines to detect duration data in the given input of tokens.

DurationFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.elements.DurationFSM

Constructor

DurationToken - Class in org.apache.ctakes.drugner.fsm.output.elements

DurationToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.elements.DurationToken

DxContextAnalyzerImpl - Class in org.apache.ctakes.padtermspotter.impl

DxContextAnalyzerImpl() - Constructor for class org.apache.ctakes.padtermspotter.impl.DxContextAnalyzerImpl

DxContextHitConsumerImpl - Class in org.apache.ctakes.padtermspotter.impl

DxContextHitConsumerImpl() - Constructor for class org.apache.ctakes.padtermspotter.impl.DxContextHitConsumerImpl

DxIndicatorFSM - Class in org.apache.ctakes.padtermspotter.fsm.pad.machine

Uses one or more finite state machines to detect ???

DxIndicatorFSM() - Constructor for class org.apache.ctakes.padtermspotter.fsm.pad.machine.DxIndicatorFSM

Constructor