A B C D E F G H I J K L M N O P Q R S T U V W X Z _

I

i - Variable in class org.apache.ctakes.assertion.pipelines.CtakesFileNamer

i - Variable in class org.apache.ctakes.core.util.CtakesFileNamer

I2B2Challenge2010CollectionReader - Class in org.apache.ctakes.assertion.cr

I2B2Challenge2010CollectionReader() - Constructor for class org.apache.ctakes.assertion.cr.I2B2Challenge2010CollectionReader

iAnnotationType - Variable in class org.apache.ctakes.drugner.ae.impl.NegContextInitializerImpl

id - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation

The unique identifier assigned to this annotation by Knowtator

id - Variable in class org.apache.ctakes.preprocessor.SegmentMetaData

ID - Static variable in class org.apache.ctakes.utils.xcas_comparison.Const

id1 - Variable in class org.apache.ctakes.assertion.cr.RelationInfo

id1 - Variable in class org.apache.ctakes.coreference.eval.helpers.SpanAlignment

id1 - Variable in class org.apache.ctakes.relationextractor.knowtator.RelationInfo

id2 - Variable in class org.apache.ctakes.assertion.cr.RelationInfo

id2 - Variable in class org.apache.ctakes.coreference.eval.helpers.SpanAlignment

id2 - Variable in class org.apache.ctakes.relationextractor.knowtator.RelationInfo

IdentifiedAnnotation - Class in org.apache.ctakes.typesystem.type.textsem

Any span of text that has been discovered or flagged for some reason, such as a Named Entity.

IdentifiedAnnotation() - Constructor for class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation

Never called.

IdentifiedAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation

Internal - constructor used by generator

IdentifiedAnnotation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation

IdentifiedAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation

IdentifiedAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem

Any span of text that has been discovered or flagged for some reason, such as a Named Entity.

IdentifiedAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type

initialize variables to correspond with Cas Type and Features

IdentifiedAnnotationFeatureExtractor - Class in org.apache.ctakes.temporal.ae.feature

Given a token, check if this token is inside any identified annotation if so check if the identifiled annotion is a known event.

IdentifiedAnnotationFeatureExtractor(String, Map<String, double[]>) - Constructor for class org.apache.ctakes.temporal.ae.feature.IdentifiedAnnotationFeatureExtractor

IdentifiedAnnotationFeatureExtractor.StringToDoublesProcessor - Class in org.apache.ctakes.temporal.ae.feature

IdentifiedAnnotationFeatureExtractor.StringToDoublesProcessor() - Constructor for class org.apache.ctakes.temporal.ae.feature.IdentifiedAnnotationFeatureExtractor.StringToDoublesProcessor

identifiedAnnotationId - Variable in class org.apache.ctakes.assertion.cr.GoldEntityAndAttributeReader

identifiedAnnotationId - Variable in class org.apache.ctakes.relationextractor.cr.GoldEntityAndRelationReader

identifiedAnnotationId - Variable in class org.apache.ctakes.relationextractor.cr.GoldEntityReader

identifier - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

idf(long, long) - Method in class org.apache.ctakes.utils.wiki.ApproximateSimilarity

ignoreConditional - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options

ignoredSet - Static variable in class org.apache.ctakes.assertion.medfacts.ConceptLookup

ignoreGeneric - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options

ignoreHistory - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options

ignoreImpossibleGoldRelations - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.Options

ignorePolarity - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options

ignoreSubject - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options

ignoreUncertainty - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options

IllnessDxIndicator - Class in org.apache.ctakes.padtermspotter.fsm.output

IllnessDxIndicator(int, int, int) - Constructor for class org.apache.ctakes.padtermspotter.fsm.output.IllnessDxIndicator

IMPLANT - Static variable in class org.apache.ctakes.drugner.elements.FormElement

INCREASE - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken

INCREASE_STATUS - Static variable in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement

INCREASEFROM - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken

IndentStartState - Class in org.apache.ctakes.drugner.fsm.states.util

IndentStartState(String) - Constructor for class org.apache.ctakes.drugner.fsm.states.util.IndentStartState

index - Variable in class org.apache.ctakes.assertion.cr.I2B2Challenge2010CollectionReader

indexOfRegex(String, Pattern) - Static method in class org.apache.ctakes.drugner.DrugMention

Scan a string for the first occurrence of some regex Pattern.

INHALANT - Static variable in class org.apache.ctakes.drugner.elements.FormElement

init() - Static method in class org.apache.ctakes.utils.xcas_comparison.Const

initEntityWikiSim() - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator

initializationComplete() - Method in class org.apache.ctakes.postagger.test.CpeTests.StatusCallbackListenerImpl

Called when the initialization is completed.

initializationComplete() - Method in class org.apache.ctakes.regression.test.RegressionPipelineTest.StatusCallbackListenerImpl

Called when the initialization is completed.

initialize(UimaContext) - Method in class org.apache.ctakes.assertion.attributes.GenericAttributeAnalysisEngine

initialize(UimaContext) - Method in class org.apache.ctakes.assertion.attributes.SubjectAttributeAnalysisEngine

initialize(UimaContext) - Method in class org.apache.ctakes.assertion.cr.GoldEntityAndAttributeReader

initialize() - Method in class org.apache.ctakes.assertion.cr.I2B2Challenge2010CollectionReader

initialize() - Method in class org.apache.ctakes.assertion.cr.XmiCollectionReaderCtakes

initialize(UimaContext) - Method in class org.apache.ctakes.assertion.eval.XMIReader

initialize(UimaContext) - Method in class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine

initialize() - Method in class org.apache.ctakes.assertion.medfacts.CasIndexer

initialize(UimaContext) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine

initialize(UimaContext) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.ConditionalCleartkAnalysisEngine

initialize(UimaContext) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.GenericCleartkAnalysisEngine

initialize(UimaContext) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.HistoryCleartkAnalysisEngine

initialize(UimaContext) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.PolarityCleartkAnalysisEngine

initialize(UimaContext) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.SubjectCleartkAnalysisEngine

initialize(UimaContext) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.UncertaintyCleartkAnalysisEngine

initialize(UimaContext) - Method in class org.apache.ctakes.assertion.pipelines.CtakesFileNamer

initialize(UimaContext) - Method in class org.apache.ctakes.chunker.ae.adjuster.ChunkAdjuster

Performs initialization logic.

initialize(UimaContext) - Method in interface org.apache.ctakes.chunker.ae.ChunkCreator

initialize(UimaContext) - Method in class org.apache.ctakes.chunker.ae.Chunker

initialize(UimaContext) - Method in class org.apache.ctakes.chunker.ae.DefaultChunkCreator

initialize(UimaContext) - Method in class org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator

initialize(UimaContext) - Method in class org.apache.ctakes.clinicalpipeline.ae.ExtractionPrepAnnotator

Method invoked by UIMA framework to initialize this annotator

initialize(UimaContext) - Method in class org.apache.ctakes.constituency.parser.ae.ConstituencyParser

initialize(UimaContext) - Method in class org.apache.ctakes.constituency.parser.ae.ParserEvaluationAnnotator

initialize() - Method in class org.apache.ctakes.constituency.parser.uima.co.ParserTreeWriterConsumer

initialize(UimaContext) - Method in class org.apache.ctakes.contexttokenizer.ae.ContextDependentTokenizerAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.CopyAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.FilterAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.OverlapAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.SectionSegmentAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.SentenceDetector

initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.SimpleSegmentAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.SimpleSegmentWithTagsAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.TokenizerAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.TokenizerAnnotatorPTB

initialize() - Method in class org.apache.ctakes.core.cc.CasConsumer

Read in configuration parameters

initialize() - Method in class org.apache.ctakes.core.cc.FilesInDirectoryCasConsumer

initialize() - Method in class org.apache.ctakes.core.cc.HtmlTableCasConsumer

initialize() - Method in class org.apache.ctakes.core.cc.NormalizedFilesInDirectoryCasConsumer

initialize() - Method in class org.apache.ctakes.core.cc.TokenFreqCasConsumer

This method opens/creates the file specified by "TokenFreqFile" and initializes the data structure that will keep track of frequency counts.

initialize() - Method in class org.apache.ctakes.core.cc.TokenOffsetsCasConsumer

initialize() - Method in class org.apache.ctakes.core.cc.XmiWriterCasConsumerCtakes

initialize() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads

initialize() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader

initialize() - Method in class org.apache.ctakes.core.cr.JdbcCollectionReader

initialize() - Method in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader

initialize() - Method in class org.apache.ctakes.core.cr.XmiCollectionReaderCtakes

initialize(UimaContext) - Method in class org.apache.ctakes.core.cr.XMIReader

initialize(UimaContext) - Method in class org.apache.ctakes.core.util.CtakesFileNamer

initialize(UimaContext) - Method in class org.apache.ctakes.coreference.ae.MipacqMarkableCreator

initialize(UimaContext) - Method in class org.apache.ctakes.coreference.ae.MipacqMarkablePairGenerator

initialize(UimaContext) - Method in class org.apache.ctakes.coreference.ae.MipacqSvmChainCreator

initialize(UimaContext) - Method in class org.apache.ctakes.coreference.cc.ODIEVectorFileWriter

initialize(UimaContext) - Method in class org.apache.ctakes.coreference.cc.PreprocessAndWriteXmi.SerializeDocumentToXMI

initialize(UimaContext) - Method in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE

initialize(UimaContext) - Method in class org.apache.ctakes.dependency.parser.ae.ClearNLPPOSTaggerAE

initialize(UimaContext) - Method in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

initialize(UimaContext) - Method in class org.apache.ctakes.dependency.parser.ae.util.XMIReader

initialize() - Method in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader

initialize() - Method in class org.apache.ctakes.dependency.parser.DependencyNodeWriter

Read in configuration parameters

initialize(UimaContext) - Method in class org.apache.ctakes.dictionary.lookup.ae.DictionaryLookupAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.dictionary.lookup.ae.ThreadedDictionaryLookupAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.dictionary.lookup.ae.ThreadedUmlsDictionaryLookupAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.dictionary.lookup.ae.UmlsDictionaryLookupAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.drugner.ae.CopyDrugAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.drugner.ae.DrugMentionAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.drugner.ae.impl.NegContextInitializerImpl

initialize() - Method in class org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel

initialize(UimaContext) - Method in class org.apache.ctakes.lvg.ae.LvgAnnotator

Performs initialization logic.

initialize(UimaContext) - Method in class org.apache.ctakes.lvg.ae.LvgBaseTokenAnnotator

Performs initialization logic.

initialize(UimaContext) - Method in interface org.apache.ctakes.necontexts.ContextAnalyzer

This will be called by the ContextAnnotator during its initialize method

initialize(UimaContext) - Method in class org.apache.ctakes.necontexts.ContextAnalyzerAdapter

initialize(UimaContext) - Method in class org.apache.ctakes.necontexts.ContextAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.necontexts.NamedEntityContextAnalyzer

initialize(UimaContext) - Method in class org.apache.ctakes.padtermspotter.ae.PADHitAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.padtermspotter.ae.SubSectionAnnotator

initialize() - Method in class org.apache.ctakes.padtermspotter.cc.PADOffSetsRecord

initialize() - Method in class org.apache.ctakes.padtermspotter.cc.RadialogyTermLookup

initialize() - Method in class org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader

initialize() - Method in class org.apache.ctakes.postagger.OpenNLPPOSCollectionReader

initialize(UimaContext) - Method in class org.apache.ctakes.postagger.POSTagger

initialize(UimaContext) - Method in class org.apache.ctakes.preprocessor.ae.CdaCasInitializer

initialize() - Method in class org.apache.ctakes.preprocessor.ae.CdaCasInitializer

initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.ae.ModifierExtractorAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.cr.GoldEntityAndRelationReader

initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.cr.GoldEntityReader

initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator

initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.eval.PreprocessAndWriteXmi.SerializeDocumentToXMI

initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.eval.XMIReader

initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.pipelines.TreeFeatureConsumer

initialize(UimaContext) - Method in class org.apache.ctakes.sideeffect.ae.PSESentenceAnnotator

initialize(AnnotatorContext) - Method in class org.apache.ctakes.sideeffect.ae.SESentenceClassifierAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.sideeffect.ae.SESentenceFeatureAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.sideeffect.ae.SideEffectAnnotator

initialize() - Method in class org.apache.ctakes.sideeffect.cc.SideEffectCasConsumer

initialize() - Method in class org.apache.ctakes.sideeffect.cc.SideEffectSentenceCasConsumer

initialize(UimaContext) - Method in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries

initialize(UimaContext) - Method in class org.apache.ctakes.smokingstatus.ae.KuRuleBasedClassifierAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.smokingstatus.ae.PcsClassifierAnnotator_libsvm

initialize(UimaContext) - Method in class org.apache.ctakes.smokingstatus.ae.ResolutionAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.smokingstatus.ae.SentenceAdjuster

Performs initialization logic.

initialize() - Method in class org.apache.ctakes.smokingstatus.cc.RecordResolutionCasConsumer

initialize(UimaContext) - Method in class org.apache.ctakes.smokingstatus.context.NamedEntityContextAnalyzer

initialize(UimaContext) - Method in class org.apache.ctakes.temporal.ae.DocTimeRelAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.temporal.ae.EventAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.temporal.ae.TimeAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.XMIWriter

initialize() - Method in class org.apache.ctakes.utils.wiki.WikiIndex

initialize(UimaContext) - Method in class org.mitre.medfacts.uima.ZoneAnnotator

initializeQueue(TreebankNode, TreebankNode) - Static method in class org.apache.ctakes.coreference.util.HobbsTreeNavigator

initWikiSim() - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator

INJECTION - Static variable in class org.apache.ctakes.drugner.elements.FormElement

input - Variable in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader

input - Variable in class org.apache.ctakes.postagger.OpenNLPPOSCollectionReader

INPUT_FILE - Static variable in class org.apache.ctakes.dependency.parser.ae.util.TestClearNLPAnalysisEngines

INPUT_FORMAT_PARAM - Static variable in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader

"InputFormat" is a optional, single, boolean parameter that determines whether or not the features associated with each word will be loaded into the CAS or not.

inputDirectory - Static variable in class org.apache.ctakes.assertion.cr.GoldEntityAndAttributeReader

inputDirectory - Static variable in class org.apache.ctakes.relationextractor.cr.GoldEntityAndRelationReader

inputDirectory - Static variable in class org.apache.ctakes.relationextractor.cr.GoldEntityReader

inputDirectory - Variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationAnalysisPipeline.Options

inputDirectory - Variable in class org.apache.ctakes.relationextractor.pipelines.RelationAnnotationAnalysis.Options

inputDirectory - Variable in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorPipeline.Options

inputDirectory - Variable in class org.apache.ctakes.temporal.data.analysis.EventContextAnalysisPipeline.Options

inputDirectory - Variable in class org.mitre.medfacts.uima.RunZoner

inputFile - Variable in class org.apache.ctakes.dependency.parser.ae.util.TestClearNLPAnalysisEngines.Options

inputFiles - Variable in class org.mitre.medfacts.uima.RunZoner

inputFormat - Variable in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader

insertAnnotationNode(JCas, TopTreebankNode, Annotation, String) - Static method in class org.apache.ctakes.constituency.parser.util.AnnotationTreeUtils

insertAttribute(String, String) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation

Inserts an (attribute, value) pair to this XcasAnnotation.

insertChild(int, SimpleTree) - Method in class org.apache.ctakes.utils.tree.SimpleTree

insertIntReference(String, int[]) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation

insertReference(String, XcasAnnotation) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation

InstallPearSilently - Class in org.apache.ctakes.utils.build

This class is used to install a pear file locally in a directory chosen by the user and then run the installed AE in CVD.

InstallPearSilently() - Constructor for class org.apache.ctakes.utils.build.InstallPearSilently

InstallPearSilently.RunInstallation - Class in org.apache.ctakes.utils.build

The RunInstallation class implements a thread that is used to run the installation.

InstallPearSilently.RunInstallation(File, File) - Constructor for class org.apache.ctakes.utils.build.InstallPearSilently.RunInstallation

Constructor that sets a given input PEAR file and a given installation directory.

InstallPipelineFromPears - Class in org.apache.ctakes.utils.build

This class is used to install a pear file locally in a directory chosen by the user and then run the installed AE in CVD.

InstallPipelineFromPears() - Constructor for class org.apache.ctakes.utils.build.InstallPipelineFromPears

instanceFeatureCount - Variable in class org.apache.ctakes.temporal.utils.SMOTEplus

INTEGER_TYPE - Static variable in interface org.apache.ctakes.dictionary.lookup.MetaDataHitConst

IntegerCondition - Class in org.apache.ctakes.core.fsm.condition

IntegerCondition() - Constructor for class org.apache.ctakes.core.fsm.condition.IntegerCondition

IntegerRange - Class in org.apache.ctakes.preprocessor

Defines a range of integers.

IntegerRange() - Constructor for class org.apache.ctakes.preprocessor.IntegerRange

IntegerRangeCondition - Class in org.apache.ctakes.core.fsm.condition

IntegerRangeCondition(int, int) - Constructor for class org.apache.ctakes.core.fsm.condition.IntegerRangeCondition

IntegerToken - Interface in org.apache.ctakes.core.fsm.token

IntegerTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters

Adapts JCas token annotation to interface expected by the Context Dependent Tokenizer.

IntegerTokenAdapter(NumToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.IntegerTokenAdapter

IntegerTokenAdapter - Class in org.apache.ctakes.core.fsm.token.adapter

IntegerTokenAdapter(Token) - Constructor for class org.apache.ctakes.core.fsm.token.adapter.IntegerTokenAdapter

IntegerValueCondition - Class in org.apache.ctakes.core.fsm.condition

IntegerValueCondition(int) - Constructor for class org.apache.ctakes.core.fsm.condition.IntegerValueCondition

interInstanceDistance - Variable in class org.apache.ctakes.temporal.utils.SMOTEplus

intersects(int, int, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil

Returns true if one span intersects with the other

INTJ - Class in org.apache.ctakes.typesystem.type.syntax

An interjection Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.INTJ Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013 XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml

INTJ() - Constructor for class org.apache.ctakes.typesystem.type.syntax.INTJ

Never called.

INTJ(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.INTJ

Internal - constructor used by generator

INTJ(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.INTJ

INTJ(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.INTJ

INTJ_Type - Class in org.apache.ctakes.typesystem.type.syntax

An interjection Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.INTJ Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013

INTJ_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.INTJ_Type

initialize variables to correspond with Cas Type and Features

INTRAARTERIAL - Static variable in class org.apache.ctakes.drugner.elements.RouteElement

INTRAARTERIAL - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken

INTRACARDIAC - Static variable in class org.apache.ctakes.drugner.elements.RouteElement

INTRACARDIAC - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken

INTRAMUSCULAR - Static variable in class org.apache.ctakes.drugner.elements.RouteElement

INTRAMUSCULAR - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken

INTRAPERITONEAL - Static variable in class org.apache.ctakes.drugner.elements.RouteElement

INTRAPERITONEAL - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken

INTRATHECAL - Static variable in class org.apache.ctakes.drugner.elements.RouteElement

INTRATHECAL - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken

INTRAVENOUS - Static variable in class org.apache.ctakes.drugner.elements.RouteElement

INTRAVENOUS - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken

isAcceptableBreak(String, int, int) - Method in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes

Allows subclasses to check an overzealous (read: poorly trained) model from flagging obvious non-breaks as breaks based on some boolean determination of a break's acceptability.

isAlias() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator

isAlphabetLetter(char) - Method in class org.apache.ctakes.core.nlp.tokenizer.Tokenizer

isAnnotationPresentInSpan(JCas, int, int, int) - Static method in class org.apache.ctakes.core.util.FSUtil

returns a true if the annotation type is present in the span

isBoundary(Annotation, int) - Method in interface org.apache.ctakes.necontexts.ContextAnalyzer

This method is called by the ContextAnnotator.

isBoundary(Annotation, int) - Method in class org.apache.ctakes.necontexts.ContextAnalyzerAdapter

isBoundary(Annotation, int) - Method in class org.apache.ctakes.necontexts.NamedEntityContextAnalyzer

isBoundary(Annotation, int) - Method in class org.apache.ctakes.smokingstatus.context.NamedEntityContextAnalyzer

isCommonNode(ConllDependencyNode) - Method in class org.apache.ctakes.dependency.parser.util.DependencyPath

isConstrained(String, String) - Method in interface org.apache.ctakes.dictionary.lookup.strtable.FieldConstraint

isConstrained(String, String) - Method in class org.apache.ctakes.dictionary.lookup.strtable.FieldConstraintImpl

isContractionThatStartsWithApostrophe(int, String) - Static method in class org.apache.ctakes.core.nlp.tokenizer.ContractionsPTB

isContractionThatStartsWithApostrophe(int, String) - Static method in class org.apache.ctakes.core.nlp.tokenizer.HyphenatedPTB

isDefinite(String) - Static method in class org.apache.ctakes.coreference.util.AttributeCalculator

isDemonstrative(String) - Static method in class org.apache.ctakes.coreference.util.AttributeCalculator

isDistantBetween(int, int) - Method in class org.apache.ctakes.sideeffect.util.PatternMatch

Return true if exist other than "and" "or" "," (ignoring DRUG and PSE) in input.substring(begin, end)

isDonorTerm(Annotation) - Static method in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier

isDrugBetween(int, int) - Method in class org.apache.ctakes.sideeffect.util.PatternMatch

Return true if finds "DRUG" in input.substring(begin, end)

isDrugBetween(int, int, int[]) - Method in class org.apache.ctakes.sideeffect.util.PatternMatch

Return true if finds "DRUG" in input.substring(begin, end) and assign offsets of DRUG to span

isDrugBetween(JCas, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil

Return true if a drug is between begin and end

isEnclosed(RelationExtractorAnnotator.IdentifiedAnnotationPair, TreebankNode) - Static method in class org.apache.ctakes.relationextractor.ae.baselines.Utils

Is this pair of entities enclosed inside a noun phrase?

isFamilyTerm(Annotation) - Static method in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier

isGoldPair(Annotation, Annotation) - Method in class org.apache.ctakes.coreference.util.GoldStandardLabeler

isInstanceOf(String, Object) - Static method in class org.apache.ctakes.padtermspotter.util.JCasUtil

isInteger() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token

isInUpperCaseStringLine(JCas, IdentifiedAnnotation) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil

Return true if the given NE belongs to the line consisting of a upper-cased string without " - "

isLeaf() - Method in class org.apache.ctakes.utils.tree.SimpleTree

isNumber(String) - Static method in class org.apache.ctakes.core.nlp.tokenizer.Tokenizer

Applies number rules to the given token.

isOtherTerm(Annotation) - Static method in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier

isPronominal(Markable) - Static method in class org.apache.ctakes.coreference.util.AttributeCalculator

isPronoun(Markable) - Static method in class org.apache.ctakes.coreference.util.AttributeCalculator

isPseBetween(int, int) - Method in class org.apache.ctakes.sideeffect.util.PatternMatch

Return true if finds "PSE" in input.substring(begin, end)

isPseBetween(int, int, int[]) - Method in class org.apache.ctakes.sideeffect.util.PatternMatch

Return true if finds "PSE" in input.substring(begin, end) and assign offsets of PSE to span

isPSEBetween(JCas, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil

Return true if a sign/symptom or disease/disorder is between begin and end

isPunctuation(char) - Static method in class org.apache.ctakes.core.nlp.tokenizer.TokenizerHelper

isSpanInSameLine(JCas, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil

Return true if the given offsets are in the same line

isTrained - Variable in class org.apache.ctakes.temporal.ae.feature.selection.FeatureSelection

isUpperCaseString(String) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil

isValidUMLSUser(String, String, String, String) - Static method in class org.apache.ctakes.dictionary.lookup.ae.ThreadedUmlsDictionaryLookupAnnotator

isValidUMLSUser(String, String, String, String) - Static method in class org.apache.ctakes.dictionary.lookup.ae.UmlsDictionaryLookupAnnotator

iv_appendWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DurationFSM

iv_begin - Variable in class org.apache.ctakes.smokingstatus.util.ClassifiableEntry

iv_changeWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM

iv_classification - Variable in class org.apache.ctakes.smokingstatus.util.ClassifiableEntry

iv_classification - Variable in class org.apache.ctakes.smokingstatus.util.TruthValue

iv_combinedSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DurationFSM

iv_currentIndex - Variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader

iv_currentIndex - Variable in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader

iv_currentIndex - Variable in class org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader

iv_dailySuffixSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_dailyWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_delimeter - Variable in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader

iv_delimeter - Variable in class org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader

iv_eightTimesPerDayWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_end - Variable in class org.apache.ctakes.smokingstatus.util.ClassifiableEntry

iv_everyOtherDayWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_everyOtherHourWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_files - Variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader

iv_firstDecreaseDualWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM

iv_firstIncreaseDualWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM

iv_firstMaxDualWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM

iv_firstNoChangeDualWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM

iv_firstStartDualWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM

iv_firstStopDualWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM

iv_fiveTimesPerDayWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_fourTimesPerDayWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_frequencySet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyFSM

iv_frequencySet - Variable in class org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM

iv_fullTextSet - Variable in class org.apache.ctakes.core.fsm.machine.MeasurementFSM

iv_fullTextSet - Variable in class org.apache.ctakes.core.fsm.machine.PersonTitleFSM

iv_fullTextSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FormFSM

iv_fullTextSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.StrengthUnitFSM

iv_hourlySuffixSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_hyphenatedSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyFSM

iv_hyphenatedSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_hyphenatedSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RangeStrengthFSM

iv_hyphenatedSet - Variable in class org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM

iv_hyphenDrugSet - Variable in class org.apache.ctakes.drugner.fsm.machines.util.HyphenatedDrugFSM

iv_language - Variable in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader

iv_language - Variable in class org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader

iv_linesFromFile - Variable in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader

iv_linesFromFile - Variable in class org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader

iv_logger - Static variable in class org.apache.ctakes.drugner.ae.DrugMentionAnnotator

iv_logger - Static variable in class org.apache.ctakes.padtermspotter.ae.PADHitAnnotator

iv_logger - Static variable in class org.apache.ctakes.padtermspotter.ae.SubSectionAnnotator

iv_logger - Static variable in class org.apache.ctakes.padtermspotter.cc.PADOffSetsRecord

iv_logger - Static variable in class org.apache.ctakes.padtermspotter.impl.PADLocationConsumerImpl

iv_logger - Static variable in class org.apache.ctakes.padtermspotter.impl.PADTermConsumerImpl

iv_logger - Variable in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries

iv_logger - Variable in class org.apache.ctakes.smokingstatus.ae.ResolutionAnnotator

iv_logger - Variable in class org.apache.ctakes.smokingstatus.ae.SentenceAdjuster

iv_map - Variable in class org.apache.ctakes.core.resource.StringIntegerMapResourceImpl

iv_map - Variable in class org.apache.ctakes.core.resource.StringMapResourceImpl

iv_middleNumericTermSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DurationFSM

iv_middleTermSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyFSM

iv_middleTermSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM

iv_middleTermSet - Variable in class org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM

iv_monthlySuffixSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_multiThenWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM

iv_noChangeWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM

iv_numberTextSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.StrengthFSM

iv_oneOfTwoTextSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.StrengthUnitFSM

iv_outputDirectory - Variable in class org.apache.ctakes.core.cc.FilesInDirectoryCasConsumer

iv_outputDirectory - Variable in class org.apache.ctakes.core.cc.NormalizedFilesInDirectoryCasConsumer

iv_outputDirectory - Variable in class org.apache.ctakes.core.cc.TokenOffsetsCasConsumer

iv_outputDirectory - Variable in class org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel

iv_perDayWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_periodSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DurationFSM

iv_periodSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyFSM

iv_periodSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_periodSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM

iv_periodSet - Variable in class org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM

iv_perWeekWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_postEightWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_postFourWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_postSixWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_prnWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_rangeSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RangeStrengthFSM

iv_recordID - Variable in class org.apache.ctakes.smokingstatus.util.ClassifiableEntry

iv_secondDualFromWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM

iv_secondDualWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM

iv_secondMaxDualWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM

iv_secondOffDualWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM

iv_sentenceList - Variable in class org.apache.ctakes.smokingstatus.util.TruthValue

iv_shortTextSet - Variable in class org.apache.ctakes.core.fsm.machine.MeasurementFSM

iv_singleChangeWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM

iv_singleDecreaseWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM

iv_singleIncreaseWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM

iv_singleInjectWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM

iv_singleMaxWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM

iv_singleNoChangeWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM

iv_singleOralWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM

iv_singleRectalWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM

iv_singleStartWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM

iv_singleStopWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM

iv_singleSumWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM

iv_singleTopicalWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM

iv_singleWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_singleWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM

iv_sixTimesPerDayWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_soloTextSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DosagesFSM

iv_specifiedGastricWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM

iv_specifiedInjectWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM

iv_specifiedOralWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM

iv_specifiedPatchesWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM

iv_specifiedWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DurationFSM

iv_specifiedWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM

iv_text - Variable in class org.apache.ctakes.smokingstatus.util.ClassifiableEntry

iv_textDenominatorSet - Variable in class org.apache.ctakes.core.fsm.machine.FractionFSM

iv_textDenominatorSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FractionStrengthFSM

iv_textNumberSet - Variable in class org.apache.ctakes.core.fsm.machine.MeasurementFSM

iv_textNumberSet - Variable in class org.apache.ctakes.core.fsm.machine.RangeFSM

iv_textNumberSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DosagesFSM

iv_textNumberSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RangeStrengthFSM

iv_textNumeratorSet - Variable in class org.apache.ctakes.core.fsm.machine.FractionFSM

iv_textNumeratorSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FractionStrengthFSM

iv_textPrefixSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_textPrefixSet - Variable in class org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM

iv_textSuffixSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_textSuffixSet - Variable in class org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM

iv_textSuffixSet - Variable in class org.apache.ctakes.drugner.fsm.machines.util.SuffixStrengthFSM

iv_threeTimesADayWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_twiceADayWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_twoOfTwoTextSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.StrengthUnitFSM

iv_type - Variable in class org.apache.ctakes.preprocessor.Annotation

iv_weeklySuffixSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

iv_yearlySuffixSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM