A B C D E F G H I J K L M N O P Q R S T U V W X Z _

R

R_POS_DELIM - Static variable in class org.apache.ctakes.dependency.parser.util.Delim

R_REL_DELIM - Static variable in class org.apache.ctakes.dependency.parser.util.Delim

R_TOK_DELIM - Static variable in class org.apache.ctakes.dependency.parser.util.Delim

RadialogyTermLookup - Class in org.apache.ctakes.padtermspotter.cc

RadialogyTermLookup() - Constructor for class org.apache.ctakes.padtermspotter.cc.RadialogyTermLookup

RadiologyRecordsCollectionReader - Class in org.apache.ctakes.padtermspotter.cr

The original code was copied from org.apache.uima.examples.cpe.FileSystemCollectionReader and modified for Mayo use.

RadiologyRecordsCollectionReader() - Constructor for class org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader

random - Variable in class org.apache.ctakes.relationextractor.data.CategoricalDistribution

RangeAnnotation - Class in org.apache.ctakes.typesystem.type.textsem

Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.RangeAnnotation Updated by JCasGen Tue Apr 09 12:44:05 EDT 2013 XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml

RangeAnnotation() - Constructor for class org.apache.ctakes.typesystem.type.textsem.RangeAnnotation

Never called.

RangeAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.RangeAnnotation

Internal - constructor used by generator

RangeAnnotation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.RangeAnnotation

RangeAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.RangeAnnotation

RangeAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem

Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.RangeAnnotation Updated by JCasGen Tue Apr 09 12:44:05 EDT 2013

RangeAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.RangeAnnotation_Type

initialize variables to correspond with Cas Type and Features

RangeCondition - Class in org.apache.ctakes.core.fsm.condition

Checks whether a token is a RangeToken.

RangeCondition() - Constructor for class org.apache.ctakes.core.fsm.condition.RangeCondition

RangeDosageCondition - Class in org.apache.ctakes.drugner.fsm.elements.conditions

Checks whether a token is a RangeStrengthToken.

RangeDosageCondition() - Constructor for class org.apache.ctakes.drugner.fsm.elements.conditions.RangeDosageCondition

RangeFSM - Class in org.apache.ctakes.core.fsm.machine

Uses one or more finite state machines to detect ranges in the given input of tokens.

RangeFSM() - Constructor for class org.apache.ctakes.core.fsm.machine.RangeFSM

Constructor

RangeStrengthAnnotation - Class in org.apache.ctakes.drugner.type

The range portion of dosages stength determination for the Drug NER profile.

RangeStrengthAnnotation() - Constructor for class org.apache.ctakes.drugner.type.RangeStrengthAnnotation

Never called.

RangeStrengthAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.RangeStrengthAnnotation

Internal - constructor used by generator

RangeStrengthAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.RangeStrengthAnnotation

RangeStrengthAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.RangeStrengthAnnotation

RangeStrengthAnnotation_Type - Class in org.apache.ctakes.drugner.type

The range portion of dosages stength determination for the Drug NER profile.

RangeStrengthAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.RangeStrengthAnnotation_Type

initialize variables to correspond with Cas Type and Features

RangeStrengthCondition - Class in org.apache.ctakes.drugner.fsm.elements.conditions

Checks whether a token is a RangeStrengthToken.

RangeStrengthCondition() - Constructor for class org.apache.ctakes.drugner.fsm.elements.conditions.RangeStrengthCondition

RangeStrengthFSM - Class in org.apache.ctakes.drugner.fsm.machines.elements

Uses one or more finite state machines to detect range strength tokens in the given input of tokens.

RangeStrengthFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.elements.RangeStrengthFSM

Constructor

RangeStrengthToken - Class in org.apache.ctakes.drugner.fsm.output.util

RangeStrengthToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.util.RangeStrengthToken

RangeToken - Class in org.apache.ctakes.core.fsm.output

RangeToken(int, int) - Constructor for class org.apache.ctakes.core.fsm.output.RangeToken

RangeToken - Class in org.apache.ctakes.drugner.fsm.output.util

RangeToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.util.RangeToken

rawTextDirectory - Variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase

RBFKernel - Class in org.apache.ctakes.utils.kernel

RBFKernel(double) - Constructor for class org.apache.ctakes.utils.kernel.RBFKernel

readMetaKeywordsFromFile(String, List) - Method in class org.apache.ctakes.sideeffect.ae.SESentenceFeatureAnnotator

Return LinkedHashMap (key:metakeyword, value:set of actual keywords belonging to metakeyword) and assign key in the insertion order (cf) LinkedHashMap.keySet() keeps the order) input file format: metakeyword|keyword|keyword...

readOnlySharpRelations - Static variable in class org.apache.ctakes.relationextractor.data.Stats

readSharpUmlsCem(File) - Static method in class org.apache.ctakes.assertion.pipelines.GoldEntityAndAttributeReaderPipelineForSeedCorpus

readSharpUmlsCem(File, File, File, File) - Static method in class org.apache.ctakes.assertion.pipelines.GoldEntityAndAttributeReaderPipelineForSeedCorpus

recalculate() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasDiff

Calculates the differences or recalculates after the two files are updated.

RecordResolutionCasConsumer - Class in org.apache.ctakes.smokingstatus.cc

RecordResolutionCasConsumer() - Constructor for class org.apache.ctakes.smokingstatus.cc.RecordResolutionCasConsumer

RecordSentence - Class in org.apache.ctakes.smokingstatus.i2b2.type

Represents a single sentence from an I2B2 record.

RecordSentence() - Constructor for class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence

Never called.

RecordSentence(int, TOP_Type) - Constructor for class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence

Internal - constructor used by generator

RecordSentence(JCas) - Constructor for class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence

RecordSentence(JCas, int, int) - Constructor for class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence

RecordSentence_Type - Class in org.apache.ctakes.smokingstatus.i2b2.type

Represents a single sentence from an I2B2 record.

RecordSentence_Type(JCas, Type) - Constructor for class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type

initialize variables to correspond with Cas Type and Features

RECTAL - Static variable in class org.apache.ctakes.drugner.elements.RouteElement

RECTAL - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken

REF_PREFIX - Static variable in class org.apache.ctakes.utils.xcas_comparison.Const

references - Variable in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation

refIntArrays - Variable in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation

RegressionPipelineTest - Class in org.apache.ctakes.regression.test

Runs a full pipeline and compares the xml output to ensure all annotators work together in harmony.

RegressionPipelineTest() - Constructor for class org.apache.ctakes.regression.test.RegressionPipelineTest

RegressionPipelineTest.StatusCallbackListenerImpl - Class in org.apache.ctakes.regression.test

Callback Listener.

RegressionPipelineTest.StatusCallbackListenerImpl(File, File) - Constructor for class org.apache.ctakes.regression.test.RegressionPipelineTest.StatusCallbackListenerImpl

REL_DISCOVERY_TECH_GOLD_ANNOTATION - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST

Relation - Class in org.apache.ctakes.typesystem.type.relation

A superclass for semantic relationships between Elements.

Relation() - Constructor for class org.apache.ctakes.typesystem.type.relation.Relation

Never called.

Relation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.Relation

Internal - constructor used by generator

Relation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.Relation

Relation_Type - Class in org.apache.ctakes.typesystem.type.relation

A superclass for semantic relationships between Elements.

Relation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.Relation_Type

initialize variables to correspond with Cas Type and Features

RelationAnnotationAnalysis - Class in org.apache.ctakes.relationextractor.pipelines

Analyze the annotations obtained by running the relation extractor on clinical notes.

RelationAnnotationAnalysis() - Constructor for class org.apache.ctakes.relationextractor.pipelines.RelationAnnotationAnalysis

RelationAnnotationAnalysis.Options - Class in org.apache.ctakes.relationextractor.pipelines

RelationAnnotationAnalysis.Options() - Constructor for class org.apache.ctakes.relationextractor.pipelines.RelationAnnotationAnalysis.Options

RelationArgument - Class in org.apache.ctakes.typesystem.type.relation

Relations are like lines connecting two or more endpoints.

RelationArgument() - Constructor for class org.apache.ctakes.typesystem.type.relation.RelationArgument

Never called.

RelationArgument(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.RelationArgument

Internal - constructor used by generator

RelationArgument(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.RelationArgument

RelationArgument_Type - Class in org.apache.ctakes.typesystem.type.relation

Relations are like lines connecting two or more endpoints.

RelationArgument_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.RelationArgument_Type

initialize variables to correspond with Cas Type and Features

relationArgumentId - Variable in class org.apache.ctakes.relationextractor.cr.GoldEntityAndRelationReader

RelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae

RelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

RelationExtractorAnnotator.IdentifiedAnnotationPair - Class in org.apache.ctakes.relationextractor.ae

RelationExtractorAnnotator.IdentifiedAnnotationPair(IdentifiedAnnotation, IdentifiedAnnotation) - Constructor for class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator.IdentifiedAnnotationPair

RelationExtractorAnnotatorsTest - Class in org.apache.ctakes.relationextractor.ae

RelationExtractorAnnotatorsTest() - Constructor for class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotatorsTest

RelationExtractorConsumer - Class in org.apache.ctakes.relationextractor.pipelines

This is a sample relation annotation consumer.

RelationExtractorConsumer() - Constructor for class org.apache.ctakes.relationextractor.pipelines.RelationExtractorConsumer

RelationExtractorEvaluation - Class in org.apache.ctakes.relationextractor.eval

RelationExtractorEvaluation(File, String, Class<? extends RelationExtractorAnnotator>, Class<? extends DataWriter<String>>, Object[], String[], boolean, boolean, boolean, boolean) - Constructor for class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation

An evaluation of a relation extractor.

RelationExtractorEvaluation.HashableArguments - Class in org.apache.ctakes.relationextractor.eval

This class is useful for mapping the spans of relation arguments to the relation's category.

RelationExtractorEvaluation.HashableArguments(int, int, int, int) - Constructor for class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.HashableArguments

RelationExtractorEvaluation.HashableArguments(Annotation, Annotation) - Constructor for class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.HashableArguments

RelationExtractorEvaluation.HashableArguments(BinaryTextRelation) - Constructor for class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.HashableArguments

RelationExtractorEvaluation.Options - Class in org.apache.ctakes.relationextractor.eval

RelationExtractorEvaluation.Options() - Constructor for class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.Options

RelationExtractorEvaluation.ParameterSettings - Class in org.apache.ctakes.relationextractor.eval

Holds a set of parameters for a relation extraction model

RelationExtractorEvaluation.ParameterSettings(boolean, float, String, double, double) - Constructor for class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.ParameterSettings

RelationExtractorEvaluation.RemoveCTakesMentionsAndCopyGoldRelations - Class in org.apache.ctakes.relationextractor.eval

Annotator that removes cTAKES mentions in the system view and copies relations from the gold view to the system view

RelationExtractorEvaluation.RemoveCTakesMentionsAndCopyGoldRelations() - Constructor for class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.RemoveCTakesMentionsAndCopyGoldRelations

RelationExtractorEvaluation.RemoveOtherRelations - Class in org.apache.ctakes.relationextractor.eval

RelationExtractorEvaluation.RemoveOtherRelations() - Constructor for class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.RemoveOtherRelations

RelationExtractorEvaluation.RemoveSmallerEntityMentions - Class in org.apache.ctakes.relationextractor.eval

RelationExtractorEvaluation.RemoveSmallerEntityMentions() - Constructor for class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.RemoveSmallerEntityMentions

RelationExtractorEvaluation.ReplaceCTakesMentionsWithGoldMentions - Class in org.apache.ctakes.relationextractor.eval

Annotator that removes cTAKES EntityMentions and Modifiers from the system view, and copies over the manually annotated EntityMentions and Modifiers from the gold view.

RelationExtractorEvaluation.ReplaceCTakesMentionsWithGoldMentions() - Constructor for class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.ReplaceCTakesMentionsWithGoldMentions

RelationExtractorPipeline - Class in org.apache.ctakes.relationextractor.pipelines

A simple pipeline that runs relation extraction on all files in a directory and saves the resulting annotations as XMI files.

RelationExtractorPipeline() - Constructor for class org.apache.ctakes.relationextractor.pipelines.RelationExtractorPipeline

RelationExtractorPipeline.Options - Class in org.apache.ctakes.relationextractor.pipelines

RelationExtractorPipeline.Options() - Constructor for class org.apache.ctakes.relationextractor.pipelines.RelationExtractorPipeline.Options

RelationExtractorPipelineSingleCas - Class in org.apache.ctakes.relationextractor.pipelines

Run relation extraction AE on a single sentence.

RelationExtractorPipelineSingleCas() - Constructor for class org.apache.ctakes.relationextractor.pipelines.RelationExtractorPipelineSingleCas

RelationExtractorTrain - Class in org.apache.ctakes.relationextractor.pipelines

This class produces production models for the RelationExtractor module.

RelationExtractorTrain() - Constructor for class org.apache.ctakes.relationextractor.pipelines.RelationExtractorTrain

RelationExtractorTrain.Options - Class in org.apache.ctakes.relationextractor.pipelines

RelationExtractorTrain.Options() - Constructor for class org.apache.ctakes.relationextractor.pipelines.RelationExtractorTrain.Options

RelationFeaturesExtractor - Interface in org.apache.ctakes.relationextractor.ae.features

Define an interface for people to implement feature extractors.

relationId - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine

relationId - Variable in class org.apache.ctakes.relationextractor.cr.GoldEntityAndRelationReader

RelationInfo - Class in org.apache.ctakes.assertion.cr

Information about a relation that includes the info about the relation's arguments.

RelationInfo(String, String, String, String, String) - Constructor for class org.apache.ctakes.assertion.cr.RelationInfo

RelationInfo - Class in org.apache.ctakes.relationextractor.knowtator

Information about a relation that includes the info about the relation's arguments.

RelationInfo(String, String, String, String, String) - Constructor for class org.apache.ctakes.relationextractor.knowtator.RelationInfo

relations - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.Options

relationSet - Static variable in class org.apache.ctakes.relationextractor.cr.Constants

relationTypes - Variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator

rels - Variable in class org.apache.ctakes.relationextractor.pipelines.TreeFeatureConsumer

removeChild(int) - Method in class org.apache.ctakes.utils.tree.SimpleTree

removeCommas(String) - Method in class org.apache.ctakes.core.fsm.adapters.NumberTokenAdapter

removeCommas(String) - Method in class org.apache.ctakes.core.fsm.token.adapter.NumberTokenAdapter

removeLeftOfAnnotation(JCas, TreebankNode, Annotation) - Static method in class org.apache.ctakes.constituency.parser.util.AnnotationTreeUtils

removeRightOfAnnotation(JCas, TreebankNode, Annotation) - Static method in class org.apache.ctakes.constituency.parser.util.AnnotationTreeUtils

replaceChild(TreebankNode, TreebankNode, TreebankNode) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils

replaceNonAsciiChars(StringBuffer, char) - Static method in class org.apache.ctakes.preprocessor.Utility

Replaces any non-ascii characters with the specified char.

reportStats(HashMap<String, Integer>, int) - Static method in class org.apache.ctakes.relationextractor.data.Stats

ResolutionAnnotator - Class in org.apache.ctakes.smokingstatus.ae

Resolves the data produced by the KU classifier, negation detection, and PCS classifier into a single smoking status value for the given sentence.

ResolutionAnnotator() - Constructor for class org.apache.ctakes.smokingstatus.ae.ResolutionAnnotator

resolveEntity(String, String) - Method in class org.apache.ctakes.preprocessor.DTDloader

ResultOf - Class in org.apache.ctakes.typesystem.type.relation

A UMLS relation between clinical elements.

ResultOf() - Constructor for class org.apache.ctakes.typesystem.type.relation.ResultOf

Never called.

ResultOf(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ResultOf

Internal - constructor used by generator

ResultOf(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.ResultOf

ResultOf_Type - Class in org.apache.ctakes.typesystem.type.relation

A UMLS relation between clinical elements.

ResultOf_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ResultOf_Type

initialize variables to correspond with Cas Type and Features

ResultOfTextRelation - Class in org.apache.ctakes.typesystem.type.relation

Updated by JCasGen Tue Apr 09 12:44:02 EDT 2013 XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml

ResultOfTextRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.ResultOfTextRelation

Never called.

ResultOfTextRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ResultOfTextRelation

Internal - constructor used by generator

ResultOfTextRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.ResultOfTextRelation

ResultOfTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation

Updated by JCasGen Tue Apr 09 12:44:02 EDT 2013

ResultOfTextRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ResultOfTextRelation_Type

initialize variables to correspond with Cas Type and Features

resumed() - Method in class org.apache.ctakes.postagger.test.CpeTests.StatusCallbackListenerImpl

Called when the CPM is resumed after a pause.

resumed() - Method in class org.apache.ctakes.regression.test.RegressionPipelineTest.StatusCallbackListenerImpl

Called when the CPM is resumed after a pause.

retainMetaData(String) - Method in class org.apache.ctakes.dictionary.lookup.AbstractBaseDictionary

Tells the Dictionary to retain specific bits of metadata for each entry in the Dictionary.

retainMetaData(String) - Method in class org.apache.ctakes.dictionary.lookup.BaseDictionaryImpl

Deprecated.

retainMetaData(String) - Method in interface org.apache.ctakes.dictionary.lookup.Dictionary

Tells the Dictionary to retain specific bits of metadata for each entry in the Dictionary.

reverse() - Method in class org.apache.ctakes.dependency.parser.util.DependencyPath

REVERSE_LOOKUP_PROBLEM_TUI - Static variable in class org.apache.ctakes.assertion.medfacts.ConceptLookup

REVERSE_LOOKUP_TEST_TUI - Static variable in class org.apache.ctakes.assertion.medfacts.ConceptLookup

REVERSE_LOOKUP_TREATMENT_TUI - Static variable in class org.apache.ctakes.assertion.medfacts.ConceptLookup

reverseLookup(ConceptType, JCas) - Static method in class org.apache.ctakes.assertion.medfacts.ConceptLookup

RIGHT_SCOPE - Static variable in class org.apache.ctakes.necontexts.ContextAnnotator

rightScopeSize - Variable in class org.apache.ctakes.necontexts.ContextAnnotator

role - Variable in class org.apache.ctakes.assertion.cr.ArgumentInfo

role - Variable in class org.apache.ctakes.relationextractor.knowtator.ArgumentInfo

role1 - Variable in class org.apache.ctakes.assertion.cr.RelationInfo

role1 - Variable in class org.apache.ctakes.relationextractor.knowtator.RelationInfo

role2 - Variable in class org.apache.ctakes.assertion.cr.RelationInfo

role2 - Variable in class org.apache.ctakes.relationextractor.knowtator.RelationInfo

RomanNumeralAnnotation - Class in org.apache.ctakes.typesystem.type.textsem

Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.RomanNumeralAnnotation Updated by JCasGen Tue Apr 09 12:44:05 EDT 2013 XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml

RomanNumeralAnnotation() - Constructor for class org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation

Never called.

RomanNumeralAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation

Internal - constructor used by generator

RomanNumeralAnnotation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation

RomanNumeralAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation

RomanNumeralAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem

Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.RomanNumeralAnnotation Updated by JCasGen Tue Apr 09 12:44:05 EDT 2013

RomanNumeralAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation_Type

initialize variables to correspond with Cas Type and Features

RomanNumeralCondition - Class in org.apache.ctakes.core.fsm.condition

Checks whether a token is a RomanNumeralToken.

RomanNumeralCondition() - Constructor for class org.apache.ctakes.core.fsm.condition.RomanNumeralCondition

RomanNumeralFSM - Class in org.apache.ctakes.core.fsm.machine

Uses one or more finite state machines to detect roman numerals in the given input of tokens.

RomanNumeralFSM() - Constructor for class org.apache.ctakes.core.fsm.machine.RomanNumeralFSM

Constructor

RomanNumeralFSM.RomanNumeralCondition - Class in org.apache.ctakes.core.fsm.machine

RomanNumeralFSM.RomanNumeralCondition() - Constructor for class org.apache.ctakes.core.fsm.machine.RomanNumeralFSM.RomanNumeralCondition

RomanNumeralToken - Class in org.apache.ctakes.core.fsm.output

RomanNumeralToken(int, int) - Constructor for class org.apache.ctakes.core.fsm.output.RomanNumeralToken

route - Variable in class org.apache.ctakes.drugner.DrugMention

e.g oral Topical Examples include medications applied onto the skin, asthma medications, enema, eye or ear drops, decongestants, vaginal creams.

RouteAnnotation - Class in org.apache.ctakes.drugner.type

The route determination for the Drug NER profile.

RouteAnnotation() - Constructor for class org.apache.ctakes.drugner.type.RouteAnnotation

Never called.

RouteAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.RouteAnnotation

Internal - constructor used by generator

RouteAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.RouteAnnotation

RouteAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.RouteAnnotation

RouteAnnotation_Type - Class in org.apache.ctakes.drugner.type

The route determination for the Drug NER profile.

RouteAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.RouteAnnotation_Type

initialize variables to correspond with Cas Type and Features

RouteCondition - Class in org.apache.ctakes.drugner.fsm.elements.conditions

Checks whether a token is a RouteToken.

RouteCondition() - Constructor for class org.apache.ctakes.drugner.fsm.elements.conditions.RouteCondition

RouteElement - Class in org.apache.ctakes.drugner.elements

RouteElement() - Constructor for class org.apache.ctakes.drugner.elements.RouteElement

RouteElement(String, int, int) - Constructor for class org.apache.ctakes.drugner.elements.RouteElement

RouteFSM - Class in org.apache.ctakes.drugner.fsm.machines.elements

Uses one or more finite state machines to detect route data in the given input of tokens.

RouteFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM

Constructor

RouteToken - Class in org.apache.ctakes.drugner.fsm.output.elements

RouteToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.elements.RouteToken

RowFillerThread - Class in org.apache.ctakes.coreference.treekernel.training

RowFillerThread(ThreadDelegator, Kernel, ArrayList<Double>, int) - Constructor for class org.apache.ctakes.coreference.treekernel.training.RowFillerThread

run(Kernel) - Method in class org.apache.ctakes.coreference.treekernel.training.LinearKernelMatrixWriter

run() - Method in class org.apache.ctakes.coreference.treekernel.training.RowFillerThread

run(TreeKernel) - Method in class org.apache.ctakes.coreference.treekernel.training.TreeKernelTrainer

run() - Method in class org.apache.ctakes.utils.build.InstallPearSilently.RunInstallation

Runs the PEAR installation process.

RunCorpusDiagnostics - Class in org.apache.ctakes.temporal.utils

RunCorpusDiagnostics() - Constructor for class org.apache.ctakes.temporal.utils.RunCorpusDiagnostics

RunCorpusDiagnostics.Options - Interface in org.apache.ctakes.temporal.utils

runEmailTests() - Static method in class org.apache.ctakes.core.nlp.tokenizer.TokenizerPTB

runNumberTests() - Static method in class org.apache.ctakes.core.nlp.tokenizer.TokenizerPTB

RunZoner - Class in org.mitre.medfacts.uima

RunZoner() - Constructor for class org.mitre.medfacts.uima.RunZoner