Hierarchy For All Packages

Package Hierarchies:

org.apache.ctakes.assertion.attributes, org.apache.ctakes.assertion.attributes.features, org.apache.ctakes.assertion.attributes.generic, org.apache.ctakes.assertion.attributes.history, org.apache.ctakes.assertion.attributes.subject, org.apache.ctakes.assertion.cr, org.apache.ctakes.assertion.eval, org.apache.ctakes.assertion.medfacts, org.apache.ctakes.assertion.medfacts.cleartk, org.apache.ctakes.assertion.medfacts.cleartk.extractors, org.apache.ctakes.assertion.medfacts.i2b2.api, org.apache.ctakes.assertion.medfacts.types, org.apache.ctakes.assertion.pipelines, org.apache.ctakes.assertion.zoner.types, org.apache.ctakes.chunker, org.apache.ctakes.chunker.ae, org.apache.ctakes.chunker.ae.adjuster, org.apache.ctakes.clinicalpipeline.ae, org.apache.ctakes.constituency.parser, org.apache.ctakes.constituency.parser.ae, org.apache.ctakes.constituency.parser.treekernel, org.apache.ctakes.constituency.parser.uima.co, org.apache.ctakes.constituency.parser.uima.type, org.apache.ctakes.constituency.parser.util, org.apache.ctakes.contexttokenizer.ae, org.apache.ctakes.core.ae, org.apache.ctakes.core.cc, org.apache.ctakes.core.ci, org.apache.ctakes.core.cr, org.apache.ctakes.core.fsm.adapters, org.apache.ctakes.core.fsm.condition, org.apache.ctakes.core.fsm.machine, org.apache.ctakes.core.fsm.output, org.apache.ctakes.core.fsm.state, org.apache.ctakes.core.fsm.token, org.apache.ctakes.core.fsm.token.adapter, org.apache.ctakes.core.knowtator, org.apache.ctakes.core.nlp.tokenizer, org.apache.ctakes.core.resource, org.apache.ctakes.core.sentence, org.apache.ctakes.core.util, org.apache.ctakes.coreference.ae, org.apache.ctakes.coreference.cc, org.apache.ctakes.coreference.eval.helpers, org.apache.ctakes.coreference.treekernel.training, org.apache.ctakes.coreference.type, org.apache.ctakes.coreference.util, org.apache.ctakes.dependency.parser, org.apache.ctakes.dependency.parser.ae, org.apache.ctakes.dependency.parser.ae.util, org.apache.ctakes.dependency.parser.cr, org.apache.ctakes.dependency.parser.util, org.apache.ctakes.dictionary.assertion, org.apache.ctakes.dictionary.lookup, org.apache.ctakes.dictionary.lookup.ae, org.apache.ctakes.dictionary.lookup.algorithms, org.apache.ctakes.dictionary.lookup.filter, org.apache.ctakes.dictionary.lookup.jdbc, org.apache.ctakes.dictionary.lookup.lucene, org.apache.ctakes.dictionary.lookup.phrasebuilder, org.apache.ctakes.dictionary.lookup.strtable, org.apache.ctakes.dictionary.lookup.vo, org.apache.ctakes.drugner, org.apache.ctakes.drugner.ae, org.apache.ctakes.drugner.ae.impl, org.apache.ctakes.drugner.cc, org.apache.ctakes.drugner.elements, org.apache.ctakes.drugner.fsm.elements.conditions, org.apache.ctakes.drugner.fsm.machines.elements, org.apache.ctakes.drugner.fsm.machines.util, org.apache.ctakes.drugner.fsm.output.elements, org.apache.ctakes.drugner.fsm.output.util, org.apache.ctakes.drugner.fsm.states.util, org.apache.ctakes.drugner.type, org.apache.ctakes.lvg.ae, org.apache.ctakes.lvg.resource, org.apache.ctakes.necontexts, org.apache.ctakes.necontexts.negation, org.apache.ctakes.necontexts.status, org.apache.ctakes.padtermspotter.ae, org.apache.ctakes.padtermspotter.cc, org.apache.ctakes.padtermspotter.cr, org.apache.ctakes.padtermspotter.fsm.output, org.apache.ctakes.padtermspotter.fsm.pad.machine, org.apache.ctakes.padtermspotter.impl, org.apache.ctakes.padtermspotter.type, org.apache.ctakes.padtermspotter.util, org.apache.ctakes.postagger, org.apache.ctakes.postagger.test, org.apache.ctakes.preprocessor, org.apache.ctakes.preprocessor.ae, org.apache.ctakes.preprocessor.test, org.apache.ctakes.regression.test, org.apache.ctakes.relationextractor.ae, org.apache.ctakes.relationextractor.ae.baselines, org.apache.ctakes.relationextractor.ae.features, org.apache.ctakes.relationextractor.cr, org.apache.ctakes.relationextractor.data, org.apache.ctakes.relationextractor.eval, org.apache.ctakes.relationextractor.knowtator, org.apache.ctakes.relationextractor.pipelines, org.apache.ctakes.sideeffect.ae, org.apache.ctakes.sideeffect.cc, org.apache.ctakes.sideeffect.type, org.apache.ctakes.sideeffect.util, org.apache.ctakes.smokingstatus, org.apache.ctakes.smokingstatus.ae, org.apache.ctakes.smokingstatus.cc, org.apache.ctakes.smokingstatus.context, org.apache.ctakes.smokingstatus.context.negation, org.apache.ctakes.smokingstatus.i2b2.type, org.apache.ctakes.smokingstatus.lookup.ae, org.apache.ctakes.smokingstatus.machine, org.apache.ctakes.smokingstatus.MLutil, org.apache.ctakes.smokingstatus.patientLevel, org.apache.ctakes.smokingstatus.type, org.apache.ctakes.smokingstatus.type.libsvm, org.apache.ctakes.smokingstatus.util, org.apache.ctakes.temporal.ae, org.apache.ctakes.temporal.ae.feature, org.apache.ctakes.temporal.ae.feature.selection, org.apache.ctakes.temporal.data.analysis, org.apache.ctakes.temporal.eval, org.apache.ctakes.temporal.utils, org.apache.ctakes.typesystem.type.constants, org.apache.ctakes.typesystem.type.refsem, org.apache.ctakes.typesystem.type.relation, org.apache.ctakes.typesystem.type.structured, org.apache.ctakes.typesystem.type.syntax, org.apache.ctakes.typesystem.type.temporary.assertion, org.apache.ctakes.typesystem.type.textsem, org.apache.ctakes.typesystem.type.textspan, org.apache.ctakes.typesystem.type.util, org.apache.ctakes.utils.build, org.apache.ctakes.utils.env, org.apache.ctakes.utils.kernel, org.apache.ctakes.utils.struct, org.apache.ctakes.utils.test, org.apache.ctakes.utils.tree, org.apache.ctakes.utils.wiki, org.apache.ctakes.utils.xcas_comparison, org.mitre.medfacts.uima

Class Hierarchy

• java.lang.Object
  • org.apache.ctakes.dictionary.lookup.AbstractBaseDictionary (implements org.apache.ctakes.dictionary.lookup.Dictionary)
    • org.apache.ctakes.dictionary.lookup.jdbc.JdbcDictionaryImpl (implements org.apache.ctakes.dictionary.lookup.Dictionary)
    • org.apache.ctakes.dictionary.lookup.lucene.LuceneDictionaryImpl (implements org.apache.ctakes.dictionary.lookup.Dictionary)
    • org.apache.ctakes.dictionary.lookup.strtable.StringTableDictionaryImpl (implements org.apache.ctakes.dictionary.lookup.Dictionary)
  • org.apache.ctakes.dictionary.lookup.AbstractBaseMetaDataHit (implements org.apache.ctakes.dictionary.lookup.MetaDataHit)
    • org.apache.ctakes.dictionary.lookup.GenericMetaDataHitImpl (implements org.apache.ctakes.dictionary.lookup.MetaDataHit)
    • org.apache.ctakes.dictionary.lookup.lucene.LuceneDocumentMetaDataHitImpl (implements org.apache.ctakes.dictionary.lookup.MetaDataHit)
    • org.apache.ctakes.dictionary.lookup.strtable.StringTableRowMetaDataHitImpl (implements org.apache.ctakes.dictionary.lookup.MetaDataHit)
  • org.apache.ctakes.coreference.util.AbstractClassifier
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractList<E> (implements java.util.List<E>)
      • java.util.AbstractSequentialList<E>
        • java.util.LinkedList<E> (implements java.lang.Cloneable, java.util.Deque<E>, java.util.List<E>, java.io.Serializable)
          • org.apache.ctakes.dependency.parser.util.DependencyPath
  • java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
    • java.util.HashMap<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
      • org.apache.ctakes.utils.struct.CounterMap<K>
  • org.apache.uima.analysis_component.AnalysisComponent_ImplBase (implements org.apache.uima.analysis_component.AnalysisComponent)
    • org.apache.uima.analysis_component.Annotator_ImplBase
      • org.apache.uima.analysis_component.JCasAnnotator_ImplBase
        • org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine
        • org.apache.ctakes.preprocessor.ae.CdaCasInitializer
        • org.apache.ctakes.chunker.ae.adjuster.ChunkAdjuster
        • org.apache.ctakes.chunker.ae.Chunker
        • org.apache.ctakes.smokingstatus.ae.ClassifiableEntries
        • org.apache.ctakes.assertion.medfacts.ConceptConverterAnalysisEngine
        • org.apache.ctakes.constituency.parser.ae.ConstituencyParser
        • org.apache.ctakes.necontexts.ContextAnnotator
        • org.apache.ctakes.contexttokenizer.ae.ContextDependentTokenizerAnnotator
        • org.apache.ctakes.core.ae.CopyAnnotator
        • org.apache.ctakes.drugner.ae.CopyDrugAnnotator
        • org.apache.ctakes.dictionary.lookup.ae.DictionaryLookupAnnotator
          • org.apache.ctakes.dictionary.lookup.ae.UmlsDictionaryLookupAnnotator
        • org.apache.ctakes.drugner.ae.DrugMentionAnnotator
        • org.apache.ctakes.clinicalpipeline.ae.ExtractionPrepAnnotator
        • org.apache.ctakes.core.ae.FilterAnnotator
        • org.uimafit.component.JCasAnnotator_ImplBase
          • org.apache.ctakes.assertion.eval.AssertionEvaluation.OnlyGoldAssertions
          • org.apache.ctakes.assertion.eval.AssertionEvaluation.ReferenceAnnotationsSystemAssertionClearer
          • org.apache.ctakes.assertion.eval.AssertionEvaluation.ReferenceIdentifiedAnnotationsSystemToGoldCopier
          • org.apache.ctakes.assertion.eval.AssertionEvaluation.ReferenceSupportingAnnotationsSystemToGoldCopier
          • org.apache.ctakes.assertion.eval.AssertionEvaluation.ReplaceCTakesEntityMentionsAndModifiersWithGold
          • org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE
          • org.apache.ctakes.dependency.parser.ae.ClearNLPPOSTaggerAE
          • org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE
          • org.cleartk.classifier.CleartkAnnotator<OUTCOME_TYPE> (implements org.uimafit.factory.initializable.Initializable)
            • org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
              • org.apache.ctakes.assertion.medfacts.cleartk.ConditionalCleartkAnalysisEngine
              • org.apache.ctakes.assertion.medfacts.cleartk.GenericCleartkAnalysisEngine
              • org.apache.ctakes.assertion.medfacts.cleartk.HistoryCleartkAnalysisEngine
              • org.apache.ctakes.assertion.medfacts.cleartk.PolarityCleartkAnalysisEngine
              • org.apache.ctakes.assertion.medfacts.cleartk.SubjectCleartkAnalysisEngine
              • org.apache.ctakes.assertion.medfacts.cleartk.UncertaintyCleartkAnalysisEngine
            • org.apache.ctakes.temporal.ae.DocTimeRelAnnotator
            • org.apache.ctakes.relationextractor.ae.ModifierExtractorAnnotator
            • org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator
              • org.apache.ctakes.relationextractor.ae.baselines.Baseline1EntityMentionPairRelationExtractorAnnotator
              • org.apache.ctakes.relationextractor.ae.baselines.Baseline2DegreeOfRelationExtractorAnnotator
              • org.apache.ctakes.relationextractor.ae.baselines.Baseline2EntityMentionPairRelationExtractorAnnotator
              • org.apache.ctakes.relationextractor.ae.baselines.Baseline3EntityMentionPairRelationExtractorAnnotator
              • org.apache.ctakes.relationextractor.ae.DegreeOfRelationExtractorAnnotator
                • org.apache.ctakes.relationextractor.ae.baselines.Baseline1DegreeOfRelationExtractorAnnotator
                • org.apache.ctakes.relationextractor.ae.baselines.Baseline3DegreeOfRelationExtractorAnnotator
              • org.apache.ctakes.relationextractor.ae.EntityMentionPairRelationExtractorAnnotator
              • org.apache.ctakes.temporal.ae.EventTimeRelationAnnotator
            • org.apache.ctakes.temporal.ae.TemporalEntityAnnotator_ImplBase
              • org.apache.ctakes.temporal.ae.EventAnnotator
              • org.apache.ctakes.temporal.ae.TimeAnnotator
          • org.apache.ctakes.core.ae.DocumentIdPrinterAnalysisEngine
          • org.apache.ctakes.temporal.eval.Evaluation_ImplBase.CopyFromGold
          • org.apache.ctakes.temporal.eval.Evaluation_ImplBase.CopyNPChunksToLookupWindowAnnotations
          • org.apache.ctakes.temporal.eval.Evaluation_ImplBase.EntityMentionRemover
          • org.apache.ctakes.temporal.eval.Evaluation_ImplBase.SegmentsFromBracketedSectionTagsAnnotator
          • org.apache.ctakes.temporal.eval.Evaluation_ImplBase.XMIReader
          • org.apache.ctakes.temporal.eval.Evaluation_ImplBase.XMIWriter
          • org.apache.ctakes.temporal.eval.EvaluationOfEventProperties.ClearEventProperties
          • org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations.RemoveCrossSentenceRelations
          • org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations.RemoveNonTLINKRelations
          • org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations.RemoveRelations
          • org.apache.ctakes.temporal.data.analysis.EventContextAnalysisConsumer
          • org.apache.ctakes.assertion.attributes.GenericAttributeAnalysisEngine
          • org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator
          • org.apache.ctakes.assertion.cr.GoldEntityAndAttributeReader
          • org.apache.ctakes.relationextractor.cr.GoldEntityAndRelationReader
          • org.apache.ctakes.relationextractor.cr.GoldEntityReader
          • org.apache.ctakes.relationextractor.eval.ModifierExtractorEvaluation.OnlyGoldModifiers
          • org.apache.ctakes.relationextractor.eval.PreprocessAndWriteXmi.CopyDocumentTextToGoldView
          • org.apache.ctakes.relationextractor.eval.PreprocessAndWriteXmi.DocumentIDAnnotator
          • org.apache.ctakes.coreference.cc.PreprocessAndWriteXmi.SerializeDocumentToXMI
          • org.apache.ctakes.relationextractor.eval.PreprocessAndWriteXmi.SerializeDocumentToXMI
          • org.apache.ctakes.relationextractor.pipelines.RelationExtractorConsumer
          • org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.RemoveCTakesMentionsAndCopyGoldRelations
          • org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.RemoveOtherRelations
          • org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.RemoveSmallerEntityMentions
          • org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.ReplaceCTakesMentionsWithGoldMentions
          • org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader
            • org.apache.ctakes.temporal.ae.THYMEKnowtatorXMLReader
          • org.apache.ctakes.assertion.attributes.SubjectAttributeAnalysisEngine
          • org.apache.ctakes.dependency.parser.ae.util.TestClearNLPAnalysisEngines.DumpClearNLPOutputAE
          • org.apache.ctakes.relationextractor.pipelines.TreeFeatureConsumer
          • org.mitre.medfacts.uima.ZoneAnnotator
        • org.apache.ctakes.smokingstatus.ae.KuRuleBasedClassifierAnnotator
        • org.apache.ctakes.lvg.ae.LvgAnnotator
        • org.apache.ctakes.lvg.ae.LvgBaseTokenAnnotator
        • org.apache.ctakes.coreference.ae.MipacqMarkableCreator
        • org.apache.ctakes.coreference.ae.MipacqMarkableExpander
        • org.apache.ctakes.coreference.ae.MipacqMarkablePairGenerator
        • org.apache.ctakes.coreference.ae.MipacqSvmChainCreator
        • org.apache.ctakes.core.ae.NullAnnotator
        • org.apache.ctakes.coreference.cc.ODIEVectorFileWriter
        • org.apache.ctakes.core.ae.OverlapAnnotator
        • org.apache.ctakes.padtermspotter.ae.PADHitAnnotator
        • org.apache.ctakes.constituency.parser.ae.ParserEvaluationAnnotator
        • org.apache.ctakes.smokingstatus.ae.PcsClassifierAnnotator_libsvm
        • org.apache.ctakes.postagger.POSTagger
        • org.apache.ctakes.sideeffect.ae.PSESentenceAnnotator
        • org.apache.ctakes.core.ae.SectionSegmentAnnotator
        • org.apache.ctakes.smokingstatus.ae.SentenceAdjuster
        • org.apache.ctakes.core.ae.SentenceDetector
        • org.apache.ctakes.sideeffect.ae.SESentenceFeatureAnnotator
        • org.apache.ctakes.sideeffect.ae.SideEffectAnnotator
        • org.apache.ctakes.core.ae.SimpleSegmentAnnotator
        • org.apache.ctakes.core.ae.SimpleSegmentWithTagsAnnotator
        • org.apache.ctakes.padtermspotter.ae.SubSectionAnnotator
        • org.apache.ctakes.dictionary.lookup.ae.ThreadedDictionaryLookupAnnotator
          • org.apache.ctakes.dictionary.lookup.ae.ThreadedUmlsDictionaryLookupAnnotator
        • org.apache.ctakes.core.ae.TokenizerAnnotator
        • org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
  • org.apache.ctakes.preprocessor.Annotation
  • org.apache.ctakes.coreference.util.AnnotationCounter
  • org.apache.ctakes.coreference.util.AnnotationSelector
  • org.apache.ctakes.constituency.parser.util.AnnotationTreeUtils
  • org.apache.uima.analysis_engine.annotator.Annotator_ImplBase (implements org.apache.uima.analysis_engine.annotator.BaseAnnotator)
    • org.apache.uima.analysis_engine.annotator.JTextAnnotator_ImplBase (implements org.apache.uima.analysis_engine.annotator.JTextAnnotator)
      • org.apache.ctakes.sideeffect.ae.SESentenceClassifierAnnotator
  • org.apache.ctakes.coreference.util.AnnotOffsetComparator (implements java.util.Comparator<T>)
  • org.apache.ctakes.utils.wiki.ApproximateMath
  • org.apache.ctakes.assertion.cr.ArgumentInfo
  • org.apache.ctakes.relationextractor.knowtator.ArgumentInfo
  • org.apache.ctakes.relationextractor.ae.features.ArgumentOrderFeatureExtractor (implements org.apache.ctakes.relationextractor.ae.features.RelationFeaturesExtractor)
  • junit.framework.Assert
    • junit.framework.TestCase (implements junit.framework.Test)
      • org.apache.ctakes.preprocessor.ClinicalNotePreProcessorTest
      • org.custommonkey.xmlunit.XMLTestCase (implements org.custommonkey.xmlunit.XSLTConstants)
        • org.apache.ctakes.regression.test.RegressionPipelineTest
  • org.apache.ctakes.assertion.medfacts.cleartk.AssertionComponents
  • org.apache.ctakes.assertion.eval.AssertionEvaluation.HashableAnnotation (implements java.lang.Comparable<T>)
  • org.apache.ctakes.assertion.medfacts.cleartk.AssertionSampleFeatureGenerator
  • org.apache.ctakes.drugner.elements.AssociatedCodeElement
  • org.apache.ctakes.drugner.elements.AssociatedPrimaryCodeElement
  • org.apache.ctakes.drugner.elements.AssociatedSecondaryCodeElement
  • org.apache.ctakes.coreference.util.AttributeCalculator
    • org.apache.ctakes.coreference.util.AnaphoricityAttributeCalculator
    • org.apache.ctakes.coreference.util.PairAttributeCalculator
      • org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
  • org.apache.ctakes.dictionary.lookup.BaseDictionaryImpl (implements org.apache.ctakes.dictionary.lookup.Dictionary)
  • org.apache.ctakes.dictionary.lookup.ae.BaseLookupConsumerImpl (implements org.apache.ctakes.dictionary.lookup.ae.LookupConsumer)
    • org.apache.ctakes.dictionary.lookup.ae.AssertionCuePhraseConsumerImpl (implements org.apache.ctakes.dictionary.lookup.ae.LookupConsumer)
    • org.apache.ctakes.dictionary.lookup.ae.NamedEntityLookupConsumerImpl (implements org.apache.ctakes.dictionary.lookup.ae.LookupConsumer)
    • org.apache.ctakes.smokingstatus.lookup.ae.NonSmokerNamedEntityLookupConsumerImpl (implements org.apache.ctakes.dictionary.lookup.ae.LookupConsumer)
    • org.apache.ctakes.dictionary.lookup.ae.OrangeBookFilterConsumerImpl (implements org.apache.ctakes.dictionary.lookup.ae.LookupConsumer)
    • org.apache.ctakes.padtermspotter.impl.PADConsumerImpl (implements org.apache.ctakes.dictionary.lookup.ae.LookupConsumer)
      • org.apache.ctakes.padtermspotter.impl.PADLocationConsumerImpl
      • org.apache.ctakes.padtermspotter.impl.PADTermConsumerImpl
    • org.apache.ctakes.smokingstatus.lookup.ae.SmokerNamedEntityLookupConsumerImpl (implements org.apache.ctakes.dictionary.lookup.ae.LookupConsumer)
    • org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedConsumerImpl (implements org.apache.ctakes.dictionary.lookup.ae.LookupConsumer)
      • org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedDbConsumerImpl (implements org.apache.ctakes.dictionary.lookup.ae.LookupConsumer)
      • org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedLuceneConsumerImpl (implements org.apache.ctakes.dictionary.lookup.ae.LookupConsumer)
    • org.apache.ctakes.smokingstatus.lookup.ae.UnknownSmokerNamedEntityLookupConsumerImpl (implements org.apache.ctakes.dictionary.lookup.ae.LookupConsumer)
  • org.apache.ctakes.dictionary.lookup.ae.BaseLookupConsumerImpl.LookupHitKey
  • org.apache.ctakes.dictionary.lookup.BaseMetaDataHitImpl (implements org.apache.ctakes.dictionary.lookup.MetaDataHit)
  • org.apache.ctakes.core.fsm.adapters.BaseTokenAdapter (implements org.apache.ctakes.core.fsm.token.BaseToken)
    • org.apache.ctakes.core.fsm.adapters.CharacterTokenAdapter (implements org.apache.ctakes.core.fsm.token.CharacterToken)
      • org.apache.ctakes.core.fsm.adapters.NewlineTokenAdapter (implements org.apache.ctakes.core.fsm.token.EolToken)
      • org.apache.ctakes.core.fsm.adapters.PunctuationTokenAdapter (implements org.apache.ctakes.core.fsm.token.PunctuationToken)
      • org.apache.ctakes.core.fsm.adapters.SymbolTokenAdapter (implements org.apache.ctakes.core.fsm.token.SymbolToken)
    • org.apache.ctakes.core.fsm.adapters.ContractionTokenAdapter (implements org.apache.ctakes.core.fsm.token.ContractionToken)
    • org.apache.ctakes.core.fsm.adapters.NumberTokenAdapter (implements org.apache.ctakes.core.fsm.token.NumberToken)
      • org.apache.ctakes.core.fsm.adapters.DecimalTokenAdapter (implements org.apache.ctakes.core.fsm.token.DecimalToken)
      • org.apache.ctakes.core.fsm.adapters.IntegerTokenAdapter (implements org.apache.ctakes.core.fsm.token.IntegerToken)
    • org.apache.ctakes.core.fsm.adapters.TextTokenAdapter (implements org.apache.ctakes.core.fsm.token.TextToken)
      • org.apache.ctakes.core.fsm.adapters.WordTokenAdapter (implements org.apache.ctakes.core.fsm.token.WordToken)
  • org.apache.ctakes.core.fsm.token.adapter.BaseTokenAdapter (implements org.apache.ctakes.core.fsm.token.BaseToken)
    • org.apache.ctakes.core.fsm.token.adapter.CharacterTokenAdapter (implements org.apache.ctakes.core.fsm.token.CharacterToken)
      • org.apache.ctakes.core.fsm.token.adapter.PunctuationTokenAdapter (implements org.apache.ctakes.core.fsm.token.PunctuationToken)
    • org.apache.ctakes.core.fsm.token.adapter.NumberTokenAdapter (implements org.apache.ctakes.core.fsm.token.NumberToken)
      • org.apache.ctakes.core.fsm.token.adapter.DecimalTokenAdapter (implements org.apache.ctakes.core.fsm.token.DecimalToken)
      • org.apache.ctakes.core.fsm.token.adapter.IntegerTokenAdapter (implements org.apache.ctakes.core.fsm.token.IntegerToken)
    • org.apache.ctakes.core.fsm.token.adapter.WordTokenAdapter (implements org.apache.ctakes.core.fsm.token.WordToken)
  • org.apache.ctakes.core.fsm.output.BaseTokenImpl (implements org.apache.ctakes.core.fsm.token.BaseToken)
    • org.apache.ctakes.necontexts.ContextHit
    • org.apache.ctakes.core.fsm.output.DateToken
    • org.apache.ctakes.core.fsm.output.FractionToken
    • org.apache.ctakes.padtermspotter.fsm.output.IllnessDxIndicator
    • org.apache.ctakes.core.fsm.output.MeasurementToken
    • org.apache.ctakes.core.fsm.output.NegationIndicator
    • org.apache.ctakes.drugner.fsm.output.util.NonIndicator
    • org.apache.ctakes.core.fsm.output.PersonTitleToken
    • org.apache.ctakes.core.fsm.output.RangeToken
    • org.apache.ctakes.core.fsm.output.RomanNumeralToken
    • org.apache.ctakes.core.fsm.output.StatusIndicator
    • org.apache.ctakes.padtermspotter.fsm.output.SubSectionIndicator
    • org.apache.ctakes.drugner.fsm.output.util.SubSectionIndicator
    • org.apache.ctakes.core.fsm.output.TimeToken
  • org.apache.ctakes.drugner.fsm.output.elements.BaseTokenImpl (implements org.apache.ctakes.core.fsm.token.BaseToken)
    • org.apache.ctakes.drugner.fsm.output.elements.AssociatedCodeToken
    • org.apache.ctakes.drugner.fsm.output.elements.ConfidenceScoreToken
    • org.apache.ctakes.drugner.fsm.output.util.DecimalStrengthToken
    • org.apache.ctakes.drugner.fsm.output.elements.DosageToken
    • org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken
    • org.apache.ctakes.drugner.fsm.output.elements.DurationToken
    • org.apache.ctakes.drugner.fsm.output.elements.FormToken
    • org.apache.ctakes.drugner.fsm.output.util.FractionStrengthToken
    • org.apache.ctakes.drugner.fsm.output.util.FractionToken
    • org.apache.ctakes.drugner.fsm.output.elements.FrequencyToken
    • org.apache.ctakes.drugner.fsm.output.elements.FrequencyUnitToken
    • org.apache.ctakes.drugner.fsm.output.util.HyphenatedDrugToken
    • org.apache.ctakes.drugner.fsm.output.util.RangeStrengthToken
    • org.apache.ctakes.drugner.fsm.output.util.RangeToken
    • org.apache.ctakes.drugner.fsm.output.elements.RouteToken
    • org.apache.ctakes.drugner.fsm.output.elements.StrengthToken
    • org.apache.ctakes.drugner.fsm.output.elements.StrengthUnitCombinedToken
    • org.apache.ctakes.drugner.fsm.output.elements.StrengthUnitToken
    • org.apache.ctakes.drugner.fsm.output.util.SuffixFrequencyToken
    • org.apache.ctakes.drugner.fsm.output.util.SuffixStrengthToken
  • org.apache.ctakes.utils.build.BuildPear
  • org.apache.ctakes.utils.build.BuildPipelinePears
  • org.apache.ctakes.utils.wiki.Cache
  • org.apache.ctakes.core.cc.CASConsumerTestDriver
  • org.apache.ctakes.assertion.medfacts.CasIndexer<T>
  • org.apache.ctakes.relationextractor.data.CategoricalDistribution
  • org.apache.ctakes.assertion.medfacts.i2b2.api.CharacterOffsetToLineTokenConverterCtakesImpl (implements org.mitre.medfacts.zoner.CharacterOffsetToLineTokenConverter)
  • org.apache.ctakes.temporal.utils.CheckKnowtatorAnnotations
  • org.apache.ctakes.chunker.ChunkAdjusterTests
  • org.apache.ctakes.chunker.ChunkerTests
  • org.apache.ctakes.temporal.ae.feature.ChunkingExtractor
  • org.apache.ctakes.smokingstatus.util.ClassifiableEntry
  • org.apache.ctakes.temporal.eval.CommandLine
  • org.apache.ctakes.temporal.eval.CommandLine.IntegerRanges
  • org.apache.ctakes.constituency.parser.util.CommandLineParserUtil
  • org.apache.ctakes.utils.xcas_comparison.Compare
  • org.apache.ctakes.assertion.medfacts.ConceptLookup
  • net.openai.util.fsm.Condition (implements java.io.Serializable)
    • org.apache.ctakes.core.fsm.condition.CombineCondition
    • org.apache.ctakes.drugner.fsm.elements.conditions.ContainsSetTextValueCondition
    • org.apache.ctakes.core.fsm.condition.DayNightWordCondition
    • org.apache.ctakes.core.fsm.condition.DecimalCondition
    • org.apache.ctakes.core.fsm.condition.DecimalRangeCondition
    • org.apache.ctakes.drugner.fsm.elements.conditions.DecimalStrengthStatusCondition
    • org.apache.ctakes.core.fsm.condition.DecimalValueCondition
    • org.apache.ctakes.core.fsm.condition.DisjoinCondition
    • org.apache.ctakes.drugner.fsm.elements.conditions.DosageCondition
    • org.apache.ctakes.drugner.fsm.elements.conditions.DrugChangeStatusCondition
    • org.apache.ctakes.drugner.fsm.elements.conditions.FormCondition
    • org.apache.ctakes.drugner.fsm.elements.conditions.FractionCondition
    • org.apache.ctakes.drugner.fsm.elements.conditions.FractionStrengthCondition
    • org.apache.ctakes.drugner.fsm.elements.conditions.FrequencyUnitCondition
    • org.apache.ctakes.core.fsm.condition.HourMinuteCondition
    • org.apache.ctakes.core.fsm.condition.IntegerCondition
    • org.apache.ctakes.core.fsm.condition.IntegerRangeCondition
    • org.apache.ctakes.core.fsm.condition.IntegerValueCondition
    • org.apache.ctakes.core.fsm.condition.NegateCondition
    • org.apache.ctakes.core.fsm.condition.NumberCondition
    • org.apache.ctakes.core.fsm.condition.PunctuationValueCondition
    • org.apache.ctakes.core.fsm.condition.RangeCondition
    • org.apache.ctakes.drugner.fsm.elements.conditions.RangeDosageCondition
    • org.apache.ctakes.drugner.fsm.elements.conditions.RangeStrengthCondition
    • org.apache.ctakes.core.fsm.condition.RomanNumeralCondition
    • org.apache.ctakes.core.fsm.machine.RomanNumeralFSM.RomanNumeralCondition
    • org.apache.ctakes.drugner.fsm.elements.conditions.RouteCondition
    • org.apache.ctakes.drugner.fsm.elements.conditions.StrengthCondition
    • org.apache.ctakes.drugner.fsm.elements.conditions.StrengthUnitCombinedCondition
    • org.apache.ctakes.drugner.fsm.elements.conditions.StrengthUnitCondition
    • org.apache.ctakes.core.fsm.condition.SymbolValueCondition
    • org.apache.ctakes.core.fsm.condition.TextSetCondition
    • org.apache.ctakes.core.fsm.condition.TextValueCondition
    • org.apache.ctakes.drugner.fsm.elements.conditions.TimeCondition
    • org.apache.ctakes.core.fsm.condition.WordSetCondition
    • org.apache.ctakes.core.fsm.condition.WordValueCondition
  • org.apache.ctakes.drugner.elements.ConfidenceScoreElement
  • org.apache.ctakes.utils.xcas_comparison.Const
  • org.apache.ctakes.typesystem.type.constants.CONST
  • org.apache.ctakes.relationextractor.cr.Constants
  • org.apache.ctakes.relationextractor.data.Constants
  • org.apache.ctakes.assertion.medfacts.i2b2.api.ConstraintConstructor
    • org.apache.ctakes.assertion.medfacts.i2b2.api.ConstraintConstructorFindContainedBy
    • org.apache.ctakes.assertion.medfacts.i2b2.api.ConstraintConstructorFindContainedWithin
  • org.apache.ctakes.necontexts.ContextAnalyzerAdapter (implements org.apache.ctakes.necontexts.ContextAnalyzer)
    • org.apache.ctakes.drugner.ae.impl.NegContextInitializerImpl
  • org.apache.ctakes.necontexts.ContextAnnotatorTests
  • org.apache.ctakes.necontexts.ContextHitConsumerAdapter (implements org.apache.ctakes.necontexts.ContextHitConsumer)
  • org.apache.ctakes.core.nlp.tokenizer.ContractionResult
  • org.apache.ctakes.core.nlp.tokenizer.ContractionsPTB
  • org.apache.ctakes.utils.xcas_comparison.ConvertAndCompare
  • org.apache.ctakes.assertion.medfacts.Converti2b2AnnotationsToCTAKES
  • org.apache.ctakes.assertion.medfacts.ConvertXMIAssertionsToi2b2Format
  • org.apache.ctakes.coreference.util.CorefConsts
  • org.apache.ctakes.utils.struct.CounterTreeMap<K>
  • org.apache.ctakes.temporal.ae.feature.CoveredTextToValuesExtractor (implements org.cleartk.classifier.feature.extractor.simple.SimpleFeatureExtractor)
  • org.apache.ctakes.temporal.ae.feature.CoveredTextToValuesExtractor.StringToDoublesProcessor (implements com.google.common.io.LineProcessor<T>)
  • org.apache.ctakes.postagger.test.CpeTests.StatusCallbackListenerImpl (implements org.apache.uima.collection.StatusCallbackListener)
  • org.apache.ctakes.assertion.medfacts.cleartk.CreateAssertionDescriptor
  • org.apache.ctakes.dictionary.assertion.CreateAssertionLuceneIndexFromDelimitedFile
  • org.apache.ctakes.core.util.CtakesFileNamer (implements org.uimafit.factory.initializable.Initializable, org.uimafit.component.xwriter.XWriterFileNamer)
  • org.apache.ctakes.assertion.pipelines.CtakesFileNamer (implements org.uimafit.factory.initializable.Initializable, org.uimafit.component.xwriter.XWriterFileNamer)
  • org.apache.ctakes.assertion.medfacts.cleartk.extractors.CueWordTest
  • org.apache.ctakes.assertion.medfacts.cleartk.extractors.CueWordTest2
  • org.apache.ctakes.core.fsm.machine.DateFSM
  • org.apache.ctakes.core.util.DateParser
  • org.apache.ctakes.dictionary.lookup.ae.DebugConsumerImpl (implements org.apache.ctakes.dictionary.lookup.ae.LookupConsumer)
  • org.apache.ctakes.drugner.fsm.machines.elements.DecimalStrengthFSM
  • org.apache.ctakes.chunker.ae.DefaultChunkCreator (implements org.apache.ctakes.chunker.ae.ChunkCreator)
  • org.xml.sax.helpers.DefaultHandler (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler)
    • org.apache.ctakes.preprocessor.ClinicalNotePreProcessor (implements org.apache.ctakes.preprocessor.PreProcessor)
    • org.apache.ctakes.utils.xcas_comparison.XcasProcessor
  • org.apache.ctakes.dependency.parser.util.Delim
  • org.apache.ctakes.relationextractor.ae.features.DependencyParseUtils
  • org.apache.ctakes.relationextractor.ae.features.DependencyPathFeaturesExtractor (implements org.apache.ctakes.relationextractor.ae.features.RelationFeaturesExtractor)
  • org.apache.ctakes.relationextractor.ae.features.DependencyTreeFeaturesExtractor (implements org.apache.ctakes.relationextractor.ae.features.RelationFeaturesExtractor)
  • org.apache.ctakes.dependency.parser.util.DependencyUtility
    • org.apache.ctakes.dependency.parser.util.ClearDependencyUtility
    • org.apache.ctakes.dependency.parser.util.ClearPOSUtility
  • org.apache.ctakes.dictionary.lookup.DictionaryEngine
  • org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl (implements org.apache.ctakes.dictionary.lookup.ae.LookupInitializer)
  • org.apache.ctakes.dictionary.lookup.algorithms.DirectPassThroughImpl (implements org.apache.ctakes.dictionary.lookup.algorithms.LookupAlgorithm)
  • org.apache.ctakes.core.util.DocumentIDAnnotationUtil
  • org.apache.ctakes.preprocessor.DocumentMetaData
  • org.apache.ctakes.core.util.DocumentSection
  • org.apache.ctakes.drugner.elements.DosageElement
  • org.apache.ctakes.drugner.fsm.machines.elements.DosagesFSM
  • org.apache.ctakes.drugner.elements.DrugChangeStatusElement
  • org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
  • org.apache.ctakes.drugner.DrugMention (implements org.apache.ctakes.drugner.DrugModel)
  • org.apache.ctakes.preprocessor.DTDloader (implements org.xml.sax.EntityResolver)
  • org.apache.ctakes.drugner.elements.DurationElement
  • org.apache.ctakes.drugner.fsm.machines.elements.DurationFSM
  • org.apache.ctakes.padtermspotter.fsm.pad.machine.DxIndicatorFSM
  • org.apache.ctakes.coreference.util.EditDistance
  • org.apache.ctakes.core.sentence.EndOfSentenceScannerImpl (implements opennlp.tools.sentdetect.EndOfSentenceScanner)
  • org.apache.ctakes.relationextractor.ae.features.EntitySpanFeatureExtractor (implements org.apache.ctakes.relationextractor.ae.features.RelationFeaturesExtractor)
  • org.apache.ctakes.utils.env.EnvironmentVariable
  • org.cleartk.eval.Evaluation_ImplBase<ITEM_TYPE,STATS_TYPE>
    • org.apache.ctakes.assertion.eval.AssertionEvaluation
    • org.apache.ctakes.temporal.eval.Evaluation_ImplBase<STATISTICS_TYPE>
      • org.apache.ctakes.temporal.eval.EvaluationOfAnnotationSpans_ImplBase
        • org.apache.ctakes.temporal.eval.EvaluationOfClearTKEventSpans
        • org.apache.ctakes.temporal.eval.EvaluationOfClearTKTimeSpans
        • org.apache.ctakes.temporal.eval.EvaluationOfEventSpans
        • org.apache.ctakes.temporal.eval.EvaluationOfTimeSpans
      • org.apache.ctakes.temporal.eval.EvaluationOfEventProperties
      • org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations
        • org.apache.ctakes.temporal.eval.SystemTemporalRelationPrinter
    • org.apache.ctakes.relationextractor.eval.ModifierExtractorEvaluation
    • org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation
  • org.apache.ctakes.temporal.data.analysis.EventContextAnalysisPipeline
  • org.apache.ctakes.temporal.ae.feature.EventTimeFlatTreeFeatureExtractor (implements org.apache.ctakes.relationextractor.ae.features.RelationFeaturesExtractor)
  • org.apache.uima.cas.impl.FeatureStructureImpl (implements java.lang.Cloneable, org.apache.uima.cas.FeatureStructure)
    • org.apache.uima.jcas.cas.TOP
      • org.apache.uima.jcas.cas.AnnotationBase (implements org.apache.uima.cas.AnnotationBaseFS)
        • org.apache.uima.jcas.tcas.Annotation (implements org.apache.uima.cas.text.AnnotationFS)
          • org.apache.ctakes.assertion.medfacts.types.Assertion
          • org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation
          • org.apache.ctakes.smokingstatus.type.libsvm.AttributeValue
            • org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue
            • org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue
            • org.apache.ctakes.smokingstatus.type.libsvm.NumericAttributeValue
            • org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue
          • org.apache.ctakes.typesystem.type.syntax.BaseToken
            • org.apache.ctakes.typesystem.type.syntax.ContractionToken
            • org.apache.ctakes.typesystem.type.syntax.NewlineToken
            • org.apache.ctakes.typesystem.type.syntax.NumToken
            • org.apache.ctakes.typesystem.type.syntax.PunctuationToken
            • org.apache.ctakes.typesystem.type.syntax.SymbolToken
            • org.apache.ctakes.typesystem.type.syntax.WordToken
          • org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree
          • org.apache.ctakes.typesystem.type.syntax.Chunk
            • org.apache.ctakes.typesystem.type.syntax.ADJP
            • org.apache.ctakes.typesystem.type.syntax.ADVP
            • org.apache.ctakes.typesystem.type.syntax.CONJP
            • org.apache.ctakes.typesystem.type.syntax.INTJ
            • org.apache.ctakes.typesystem.type.syntax.LST
            • org.apache.ctakes.typesystem.type.syntax.NP
            • org.apache.ctakes.typesystem.type.syntax.O
            • org.apache.ctakes.typesystem.type.syntax.PP
            • org.apache.ctakes.typesystem.type.syntax.PRT
            • org.apache.ctakes.typesystem.type.syntax.SBAR
            • org.apache.ctakes.typesystem.type.syntax.UCP
            • org.apache.ctakes.typesystem.type.syntax.VP
          • org.apache.ctakes.drugner.type.ChunkAnnotation
          • org.apache.ctakes.assertion.medfacts.types.Concept
          • org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
          • org.apache.ctakes.drugner.type.DecimalStrengthAnnotation
          • org.apache.ctakes.smokingstatus.type.libsvm.DocumentID
          • org.apache.ctakes.drugner.type.DosagesAnnotation
          • org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation
          • org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation
          • org.apache.ctakes.drugner.type.DrugMentionAnnotation
          • org.apache.ctakes.drugner.type.DurationAnnotation
          • org.apache.ctakes.drugner.type.FormAnnotation
          • org.apache.ctakes.drugner.type.FractionStrengthAnnotation
          • org.apache.ctakes.drugner.type.FrequencyAnnotation
          • org.apache.ctakes.drugner.type.FrequencyUnitAnnotation
          • org.apache.ctakes.assertion.zoner.types.Heading
          • org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
            • org.apache.ctakes.typesystem.type.textsem.ContextAnnotation
            • org.apache.ctakes.typesystem.type.textsem.DateAnnotation
            • org.apache.ctakes.typesystem.type.textsem.EntityMention
              • org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention
            • org.apache.ctakes.typesystem.type.textsem.EventMention
              • org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
              • org.apache.ctakes.typesystem.type.textsem.LabMention
              • org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
              • org.apache.ctakes.typesystem.type.textsem.MedicationMention
              • org.apache.ctakes.typesystem.type.textsem.ProcedureMention
              • org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
            • org.apache.ctakes.typesystem.type.textsem.FractionAnnotation
            • org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
            • org.apache.ctakes.typesystem.type.textsem.Modifier
              • org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier
              • org.apache.ctakes.typesystem.type.textsem.BodySideModifier
              • org.apache.ctakes.typesystem.type.textsem.ConditionalModifier
              • org.apache.ctakes.typesystem.type.textsem.CourseModifier
              • org.apache.ctakes.typesystem.type.textsem.GenericModifier
              • org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier
              • org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier
              • org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier
              • org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier
              • org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier
              • org.apache.ctakes.typesystem.type.textsem.LabValueModifier
              • org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier
              • org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier
              • org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier
              • org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier
              • org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier
              • org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier
              • org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier
              • org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier
              • org.apache.ctakes.typesystem.type.textsem.PolarityModifier
              • org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier
              • org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier
              • org.apache.ctakes.typesystem.type.textsem.SeverityModifier
              • org.apache.ctakes.typesystem.type.textsem.SubjectModifier
              • org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier
            • org.apache.ctakes.smokingstatus.type.NonSmokerNamedEntityAnnotation
            • org.apache.ctakes.padtermspotter.type.PADHit
            • org.apache.ctakes.padtermspotter.type.PADLocation
            • org.apache.ctakes.padtermspotter.type.PADTerm
            • org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation
            • org.apache.ctakes.typesystem.type.textsem.RangeAnnotation
            • org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation
            • org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation
            • org.apache.ctakes.typesystem.type.textsem.TimeAnnotation
            • org.apache.ctakes.typesystem.type.textsem.TimeMention
            • org.apache.ctakes.smokingstatus.type.UnknownSmokerNamedEntityAnnotation
          • org.apache.ctakes.typesystem.type.textspan.List
          • org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation
          • org.apache.ctakes.coreference.type.Markable
            • org.apache.ctakes.coreference.type.DemMarkable
            • org.apache.ctakes.coreference.type.NEMarkable
            • org.apache.ctakes.coreference.type.PronounMarkable
          • org.apache.ctakes.coreference.type.MarkablePairSet
          • org.apache.ctakes.typesystem.type.textspan.Paragraph
          • org.apache.ctakes.typesystem.type.textsem.Predicate
          • org.apache.ctakes.sideeffect.type.PSESentence
          • org.apache.ctakes.sideeffect.type.PSESentenceFeature
          • org.apache.ctakes.drugner.type.RangeStrengthAnnotation
          • org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence
          • org.apache.ctakes.drugner.type.RouteAnnotation
          • org.apache.ctakes.typesystem.type.textspan.Segment
          • org.apache.ctakes.typesystem.type.textsem.SemanticArgument
          • org.apache.ctakes.typesystem.type.textspan.Sentence
          • org.apache.ctakes.sideeffect.type.SESentence
          • org.apache.ctakes.sideeffect.type.SideEffectAnnotation
          • org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification
          • org.apache.ctakes.drugner.type.StrengthAnnotation
          • org.apache.ctakes.drugner.type.StrengthUnitAnnotation
          • org.apache.ctakes.padtermspotter.type.SubSection
          • org.apache.ctakes.drugner.type.SubSectionAnnotation
          • org.apache.ctakes.assertion.zoner.types.Subzone
          • org.apache.ctakes.drugner.type.SuffixStrengthAnnotation
          • org.apache.ctakes.typesystem.type.syntax.TreebankNode
            • org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode
            • org.apache.ctakes.typesystem.type.syntax.TopTreebankNode
          • org.apache.ctakes.assertion.zoner.types.Zone
      • org.apache.ctakes.coreference.type.BooleanLabeledFS
      • org.apache.ctakes.typesystem.type.structured.Demographics
      • org.apache.ctakes.typesystem.type.structured.DocumentClassification
      • org.apache.ctakes.typesystem.type.structured.DocumentID
      • org.apache.ctakes.typesystem.type.refsem.Element
        • org.apache.ctakes.typesystem.type.refsem.Attribute
          • org.apache.ctakes.typesystem.type.refsem.BodyLaterality
          • org.apache.ctakes.typesystem.type.refsem.BodySide
          • org.apache.ctakes.typesystem.type.refsem.Course
          • org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag
          • org.apache.ctakes.typesystem.type.refsem.LabReferenceRange
          • org.apache.ctakes.typesystem.type.refsem.LabValue
          • org.apache.ctakes.typesystem.type.refsem.MedicationDosage
          • org.apache.ctakes.typesystem.type.refsem.MedicationDuration
          • org.apache.ctakes.typesystem.type.refsem.MedicationForm
          • org.apache.ctakes.typesystem.type.refsem.MedicationFrequency
          • org.apache.ctakes.typesystem.type.refsem.MedicationRoute
          • org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange
          • org.apache.ctakes.typesystem.type.refsem.MedicationStrength
          • org.apache.ctakes.typesystem.type.refsem.ProcedureDevice
          • org.apache.ctakes.typesystem.type.refsem.ProcedureMethod
          • org.apache.ctakes.typesystem.type.refsem.Severity
        • org.apache.ctakes.typesystem.type.refsem.Date
        • org.apache.ctakes.typesystem.type.refsem.Entity
          • org.apache.ctakes.typesystem.type.refsem.AnatomicalSite
        • org.apache.ctakes.typesystem.type.refsem.Event
          • org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
          • org.apache.ctakes.typesystem.type.refsem.Lab
          • org.apache.ctakes.typesystem.type.refsem.Medication
          • org.apache.ctakes.typesystem.type.refsem.Procedure
          • org.apache.ctakes.typesystem.type.refsem.SignSymptom
        • org.apache.ctakes.typesystem.type.refsem.Time
      • org.apache.ctakes.typesystem.type.refsem.EventProperties
      • org.apache.ctakes.typesystem.type.syntax.Lemma
      • org.apache.ctakes.coreference.type.MarkablePair
      • org.apache.ctakes.typesystem.type.structured.Metadata
      • org.apache.ctakes.typesystem.type.refsem.OntologyConcept
        • org.apache.ctakes.typesystem.type.refsem.UmlsConcept
      • org.apache.ctakes.typesystem.type.util.Pair
      • org.apache.ctakes.coreference.type.Pair
      • org.apache.ctakes.typesystem.type.util.Pairs
        • org.apache.ctakes.typesystem.type.util.ProbabilityDistribution
      • org.apache.ctakes.typesystem.type.relation.Relation
        • org.apache.ctakes.typesystem.type.relation.AttributeRelation
          • org.apache.ctakes.typesystem.type.relation.DegreeOf
        • org.apache.ctakes.typesystem.type.relation.BinaryTextRelation
          • org.apache.ctakes.typesystem.type.relation.AffectsTextRelation
          • org.apache.ctakes.typesystem.type.relation.AspectualTextRelation
          • org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation
          • org.apache.ctakes.typesystem.type.relation.CoreferenceRelation
          • org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation
          • org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation
          • org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation
          • org.apache.ctakes.typesystem.type.relation.ManifestationOfTextRelation
          • org.apache.ctakes.typesystem.type.relation.ResultOfTextRelation
          • org.apache.ctakes.typesystem.type.syntax.StanfordDependency
          • org.apache.ctakes.typesystem.type.relation.TemporalTextRelation
          • org.apache.ctakes.typesystem.type.relation.UMLSRelation
        • org.apache.ctakes.typesystem.type.relation.CollectionTextRelation
        • org.apache.ctakes.typesystem.type.relation.ElementRelation
          • org.apache.ctakes.typesystem.type.relation.Affects
          • org.apache.ctakes.typesystem.type.relation.LocationOf
          • org.apache.ctakes.typesystem.type.relation.ManifestationOf
          • org.apache.ctakes.typesystem.type.relation.ResultOf
          • org.apache.ctakes.typesystem.type.relation.TemporalRelation
        • org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation
      • org.apache.ctakes.typesystem.type.relation.RelationArgument
      • org.apache.ctakes.typesystem.type.structured.SourceData
  • org.apache.ctakes.coreference.util.FeatureVector
  • org.apache.ctakes.dictionary.lookup.strtable.FieldConstraintImpl (implements org.apache.ctakes.dictionary.lookup.strtable.FieldConstraint)
  • org.apache.ctakes.core.resource.FileLocator
  • org.apache.ctakes.core.resource.FileResourceImpl (implements org.apache.ctakes.core.resource.FileResource, org.apache.uima.resource.SharedResourceObject)
  • org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl (implements org.apache.ctakes.dictionary.lookup.ae.LookupInitializer)
  • org.apache.ctakes.dictionary.lookup.algorithms.FirstTokenPermutationImpl (implements org.apache.ctakes.dictionary.lookup.algorithms.LookupAlgorithm)
  • org.apache.ctakes.relationextractor.ae.features.FlatTreeFeatureExtractor (implements org.apache.ctakes.relationextractor.ae.features.RelationFeaturesExtractor)
  • org.apache.ctakes.drugner.elements.FormElement
  • org.apache.ctakes.drugner.fsm.machines.elements.FormFSM
  • org.apache.ctakes.core.fsm.machine.FractionFSM
  • org.apache.ctakes.drugner.fsm.machines.elements.FractionStrengthFSM
  • org.apache.ctakes.utils.tree.FragmentUtils
  • org.apache.ctakes.drugner.elements.FrequencyElement
  • org.apache.ctakes.drugner.fsm.machines.elements.FrequencyFSM
  • org.apache.ctakes.drugner.elements.FrequencyUnitElement
  • org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
  • org.apache.ctakes.coreference.util.FSIteratorToList
  • org.apache.ctakes.core.util.FSUtil
  • org.apache.ctakes.smokingstatus.MLutil.GenerateTrainingData
  • org.apache.ctakes.assertion.attributes.generic.GenericAttributeClassifier
  • org.apache.ctakes.assertion.attributes.features.GenericFeaturesExtractor (implements org.cleartk.classifier.feature.extractor.simple.SimpleFeatureExtractor)
  • org.apache.ctakes.relationextractor.data.GoldAnnotationAnalysisPipeline
  • org.apache.ctakes.assertion.pipelines.GoldEntityAndAttributeReaderPipeline
  • org.apache.ctakes.assertion.pipelines.GoldEntityAndAttributeReaderPipelineForSeedCorpus
  • org.apache.ctakes.relationextractor.pipelines.GoldEntityAndRelationReaderPipeline
  • org.apache.ctakes.coreference.util.GoldStandardLabeler
  • org.apache.ctakes.assertion.attributes.history.HistoryAttributeClassifier
  • org.apache.ctakes.assertion.attributes.features.HistoryFeaturesExtractor (implements org.cleartk.classifier.feature.extractor.simple.SimpleFeatureExtractor)
  • org.apache.ctakes.coreference.util.HobbsTreeNavigator
  • org.apache.ctakes.core.cc.HtmlTableCasConsumer.AnnotationLengthComparator (implements java.util.Comparator<T>)
  • org.apache.ctakes.core.cc.HtmlTableCasConsumer.AnnotationPositionComparator (implements java.util.Comparator<T>)
  • org.apache.ctakes.drugner.fsm.machines.util.HyphenatedDrugFSM
  • org.apache.ctakes.core.nlp.tokenizer.HyphenatedPTB
  • org.apache.ctakes.core.ci.HyphenTextModifierImpl (implements org.apache.ctakes.core.ci.TextModifier)
  • org.apache.ctakes.core.ci.HyphenTextModifierImplTests
  • org.apache.ctakes.temporal.ae.feature.IdentifiedAnnotationFeatureExtractor (implements org.cleartk.classifier.feature.extractor.simple.SimpleFeatureExtractor)
  • org.apache.ctakes.temporal.ae.feature.IdentifiedAnnotationFeatureExtractor.StringToDoublesProcessor (implements com.google.common.io.LineProcessor<T>)
  • org.apache.ctakes.utils.build.InstallPearSilently
  • org.apache.ctakes.utils.build.InstallPearSilently.RunInstallation (implements java.lang.Runnable)
  • org.apache.ctakes.utils.build.InstallPipelineFromPears
  • org.apache.ctakes.preprocessor.IntegerRange
  • org.apache.ctakes.padtermspotter.util.JCasUtil
  • org.apache.ctakes.core.util.JCasUtil
  • org.apache.ctakes.core.resource.JdbcConnectionResourceImpl (implements org.apache.ctakes.core.resource.JdbcConnectionResource, org.apache.uima.resource.SharedResourceObject)
  • org.apache.ctakes.utils.kernel.Kernel
    • org.apache.ctakes.utils.kernel.PolyKernel
      • org.apache.ctakes.utils.kernel.LinearKernel
    • org.apache.ctakes.utils.kernel.RBFKernel
    • org.apache.ctakes.constituency.parser.treekernel.TreeKernel
  • org.apache.ctakes.coreference.treekernel.training.KernelMatrixCompositor
  • org.apache.ctakes.core.knowtator.KnowtatorAnnotation
  • org.apache.ctakes.core.knowtator.KnowtatorAnnotation.Span
  • org.apache.ctakes.core.knowtator.KnowtatorXMLParser
  • org.apache.ctakes.coreference.treekernel.training.LinearKernelMatrixWriter (implements org.apache.ctakes.coreference.util.ThreadDelegator)
  • org.apache.ctakes.core.resource.LinesFromFileStringsResourceImpl (implements org.apache.uima.resource.SharedResourceObject, org.apache.ctakes.core.resource.StringsResource)
  • org.apache.ctakes.core.util.ListFactory
  • org.apache.ctakes.dictionary.lookup.ae.LookupAnnotationToJCasAdapter (implements org.apache.ctakes.dictionary.lookup.vo.LookupAnnotation, org.apache.ctakes.dictionary.lookup.vo.LookupToken)
  • org.apache.ctakes.dictionary.lookup.vo.LookupAnnotationToTokAdapter (implements org.apache.ctakes.dictionary.lookup.vo.LookupAnnotation, org.apache.ctakes.dictionary.lookup.vo.LookupToken)
  • org.apache.ctakes.dictionary.lookup.vo.LookupHit
  • org.apache.ctakes.dictionary.lookup.ae.LookupParseUtilities
  • org.apache.ctakes.dictionary.lookup.ae.LookupParseUtilitiesRefactor
  • org.apache.ctakes.dictionary.lookup.ae.LookupSpec
  • org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl (implements org.apache.ctakes.core.resource.LuceneIndexReaderResource, org.apache.uima.resource.SharedResourceObject)
  • org.apache.ctakes.lvg.ae.LvgAnnotator.LemmaLocalClass
  • org.apache.ctakes.lvg.ae.LvgBaseTokenAnnotator.LemmaLocalClass
  • org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl (implements org.apache.ctakes.lvg.resource.LvgCmdApiResource, org.apache.uima.resource.SharedResourceObject)
  • org.apache.ctakes.relationextractor.cr.Mapper
  • org.apache.ctakes.coreference.util.MarkableDepUtils
  • org.apache.ctakes.coreference.ae.MarkableProb
  • org.apache.ctakes.coreference.util.MarkableTreeUtils
  • org.apache.ctakes.constituency.parser.MaxentParserWrapper (implements org.apache.ctakes.constituency.parser.ParserWrapper)
  • org.apache.ctakes.core.fsm.machine.MeasurementFSM
  • org.apache.ctakes.dictionary.lookup.MetaDataHitComparator (implements java.util.Comparator<T>, org.apache.ctakes.dictionary.lookup.MetaDataHitConst)
  • org.apache.ctakes.dictionary.lookup.filter.MetaDataPostLookupFilterImpl (implements org.apache.ctakes.dictionary.lookup.filter.PostLookupFilter)
  • org.apache.ctakes.temporal.ae.feature.selection.MutualInformationFeatureSelection.MutualInformationStats<OUTCOME_T>
  • org.apache.ctakes.necontexts.NamedEntityContextAnalyzer (implements org.apache.ctakes.necontexts.ContextAnalyzer)
    • org.apache.ctakes.padtermspotter.impl.DxContextAnalyzerImpl (implements org.apache.ctakes.necontexts.ContextAnalyzer)
    • org.apache.ctakes.necontexts.negation.NegationContextAnalyzer
    • org.apache.ctakes.padtermspotter.impl.NegativeContextAnalyzerImpl (implements org.apache.ctakes.necontexts.ContextAnalyzer)
    • org.apache.ctakes.necontexts.status.StatusContextAnalyzer (implements org.apache.ctakes.necontexts.ContextAnalyzer)
  • org.apache.ctakes.smokingstatus.context.NamedEntityContextAnalyzer (implements org.apache.ctakes.necontexts.ContextAnalyzer)
    • org.apache.ctakes.smokingstatus.context.negation.NegationContextAnalyzer
  • org.apache.ctakes.necontexts.NamedEntityContextHitConsumer (implements org.apache.ctakes.necontexts.ContextHitConsumer)
    • org.apache.ctakes.padtermspotter.impl.DxContextHitConsumerImpl (implements org.apache.ctakes.necontexts.ContextHitConsumer)
    • org.apache.ctakes.necontexts.negation.NegationContextHitConsumer (implements org.apache.ctakes.necontexts.ContextHitConsumer)
    • org.apache.ctakes.padtermspotter.impl.NegativeContextHitConsumerImpl (implements org.apache.ctakes.necontexts.ContextHitConsumer)
    • org.apache.ctakes.necontexts.status.StatusContextHitConsumer (implements org.apache.ctakes.necontexts.ContextHitConsumer)
  • org.apache.ctakes.relationextractor.ae.features.NamedEntityFeaturesExtractor (implements org.apache.ctakes.relationextractor.ae.features.RelationFeaturesExtractor)
  • org.apache.ctakes.relationextractor.ae.NamedEntityFeaturesExtractorTest
  • org.apache.ctakes.necontexts.NegationAnnotatorTests
  • org.apache.ctakes.smokingstatus.machine.NegationFSM
  • org.apache.ctakes.core.fsm.machine.NegationFSM
  • org.apache.ctakes.padtermspotter.fsm.pad.machine.NegDxIndicatorFSM
  • org.apache.ctakes.drugner.fsm.machines.util.NegIndicatorFSM (implements org.apache.ctakes.core.fsm.machine.FSM)
  • org.apache.ctakes.drugner.fsm.machines.util.NonIndicatorFSM
  • org.apache.ctakes.core.nlp.tokenizer.OffsetComparator (implements java.util.Comparator<T>)
  • org.apache.ctakes.postagger.test.OpenNLPPOSCollectionReaderTests
  • org.cleartk.util.Options_ImplBase
    • org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
    • org.apache.ctakes.temporal.data.analysis.EventContextAnalysisPipeline.Options
    • org.apache.ctakes.relationextractor.data.GoldAnnotationAnalysisPipeline.Options
    • org.apache.ctakes.relationextractor.eval.ModifierExtractorEvaluation.Options
    • org.apache.ctakes.coreference.cc.PreprocessAndWriteXmi.Options
    • org.apache.ctakes.relationextractor.eval.PreprocessAndWriteXmi.Options
    • org.apache.ctakes.relationextractor.eval.PrintRelationStatistics.Options
    • org.apache.ctakes.relationextractor.pipelines.RelationAnnotationAnalysis.Options
    • org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.Options
    • org.apache.ctakes.relationextractor.pipelines.RelationExtractorPipeline.Options
    • org.apache.ctakes.relationextractor.pipelines.RelationExtractorTrain.Options
    • org.apache.ctakes.dependency.parser.ae.util.TestClearNLPAnalysisEngines.Options
    • org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors.Options
  • org.apache.ctakes.core.ae.OverlapAnnotator.DeleteActionImpl (implements org.apache.ctakes.core.ae.OverlapAnnotator.Action)
  • org.apache.ctakes.core.ae.OverlapAnnotator.ModifyActionImpl (implements org.apache.ctakes.core.ae.OverlapAnnotator.Action)
  • org.apache.ctakes.padtermspotter.ae.PADHitAnnotator.HitComparator (implements java.util.Comparator<T>)
  • org.apache.ctakes.core.util.ParamUtil
  • org.apache.ctakes.coreference.util.ParentPtrTree
  • org.apache.ctakes.relationextractor.ae.features.PartOfSpeechFeaturesExtractor (implements org.apache.ctakes.relationextractor.ae.features.RelationFeaturesExtractor)
  • org.apache.ctakes.smokingstatus.patientLevel.PatientLevelSmokingStatus
  • org.apache.ctakes.sideeffect.util.PatternMatch
  • org.apache.ctakes.dictionary.lookup.algorithms.PermutationUtil
  • org.apache.ctakes.core.fsm.machine.PersonTitleFSM
  • org.apache.ctakes.relationextractor.ae.features.PETFeatureExtractor (implements org.apache.ctakes.relationextractor.ae.features.RelationFeaturesExtractor)
  • org.apache.ctakes.relationextractor.ae.features.PhraseChunkingExtractor (implements org.apache.ctakes.relationextractor.ae.features.RelationFeaturesExtractor)
  • org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator (implements org.apache.ctakes.chunker.ae.ChunkCreator)
  • org.apache.ctakes.postagger.test.POSTaggerTests
  • org.apache.ctakes.dictionary.lookup.filter.PostLookupFilterGroupImpl (implements org.apache.ctakes.dictionary.lookup.filter.PostLookupFilter)
  • org.apache.ctakes.temporal.ae.feature.PredicateArgumentExtractor
  • org.apache.ctakes.relationextractor.ae.features.PrepositionFeatureExtractor (implements org.apache.ctakes.relationextractor.ae.features.RelationFeaturesExtractor)
  • org.apache.ctakes.coreference.cc.PreprocessAndWriteXmi
  • org.apache.ctakes.relationextractor.eval.PreprocessAndWriteXmi
  • org.apache.ctakes.temporal.eval.PrintRelations
  • org.apache.ctakes.relationextractor.eval.PrintRelationStatistics
  • org.apache.ctakes.relationextractor.ae.features.PunctuationFeatureExtractor (implements org.apache.ctakes.relationextractor.ae.features.RelationFeaturesExtractor)
  • org.apache.ctakes.core.fsm.machine.RangeFSM
  • org.apache.ctakes.drugner.fsm.machines.elements.RangeStrengthFSM
  • org.apache.ctakes.regression.test.RegressionPipelineTest.StatusCallbackListenerImpl (implements org.apache.uima.collection.StatusCallbackListener)
  • org.apache.ctakes.relationextractor.pipelines.RelationAnnotationAnalysis
  • org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator.IdentifiedAnnotationPair
  • org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotatorsTest
  • org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.HashableArguments (implements java.lang.Comparable<T>)
  • org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.ParameterSettings
  • org.apache.ctakes.relationextractor.pipelines.RelationExtractorPipeline
  • org.apache.ctakes.relationextractor.pipelines.RelationExtractorPipelineSingleCas
  • org.apache.ctakes.relationextractor.pipelines.RelationExtractorTrain
  • org.apache.ctakes.assertion.cr.RelationInfo
  • org.apache.ctakes.relationextractor.knowtator.RelationInfo
  • org.apache.ctakes.smokingstatus.ae.ResolutionAnnotator
  • org.apache.uima.resource.Resource_ImplBase (implements org.apache.uima.resource.Resource)
    • org.apache.uima.resource.ConfigurableResource_ImplBase (implements org.apache.uima.resource.ConfigurableResource)
      • org.apache.uima.collection.CasConsumer_ImplBase (implements org.apache.uima.collection.CasConsumer)
        • org.apache.ctakes.core.cc.CasConsumer
        • org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel
        • org.apache.ctakes.dependency.parser.DependencyNodeWriter
        • org.apache.ctakes.core.cc.FilesInDirectoryCasConsumer
        • org.apache.ctakes.core.cc.HtmlTableCasConsumer
        • org.apache.ctakes.core.cc.NormalizedFilesInDirectoryCasConsumer
        • org.apache.ctakes.padtermspotter.cc.PADOffSetsRecord (implements org.apache.ctakes.core.cc.NonTerminalConsumer)
        • org.apache.ctakes.constituency.parser.uima.co.ParserTreeWriterConsumer
        • org.apache.ctakes.padtermspotter.cc.RadialogyTermLookup (implements org.apache.ctakes.core.cc.NonTerminalConsumer)
        • org.apache.ctakes.smokingstatus.cc.RecordResolutionCasConsumer
        • org.apache.ctakes.sideeffect.cc.SideEffectCasConsumer
        • org.apache.ctakes.sideeffect.cc.SideEffectSentenceCasConsumer
        • org.apache.ctakes.core.cc.TokenFreqCasConsumer
        • org.apache.ctakes.core.cc.TokenOffsetsCasConsumer
        • org.apache.ctakes.core.cc.XmiWriterCasConsumerCtakes
      • org.apache.uima.collection.CollectionReader_ImplBase (implements org.apache.uima.collection.CollectionReader)
        • org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader
        • org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader
          • org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads
        • org.apache.ctakes.assertion.cr.I2B2Challenge2010CollectionReader
        • org.uimafit.component.JCasCollectionReader_ImplBase
          • org.apache.ctakes.dependency.parser.ae.util.XMIReader
          • org.apache.ctakes.assertion.eval.XMIReader
          • org.apache.ctakes.relationextractor.eval.XMIReader
          • org.apache.ctakes.core.cr.XMIReader
        • org.apache.ctakes.core.cr.JdbcCollectionReader
        • org.apache.ctakes.core.cr.LinesFromFileCollectionReader
        • org.apache.ctakes.postagger.OpenNLPPOSCollectionReader
        • org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader
        • org.apache.ctakes.assertion.cr.XmiCollectionReaderCtakes
        • org.apache.ctakes.core.cr.XmiCollectionReaderCtakes
  • org.apache.ctakes.core.fsm.machine.RomanNumeralFSM
  • org.apache.ctakes.drugner.elements.RouteElement
  • org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM
  • org.apache.ctakes.temporal.utils.RunCorpusDiagnostics
  • org.mitre.medfacts.uima.RunZoner
  • org.apache.ctakes.utils.wiki.SearchResult
  • org.apache.ctakes.preprocessor.SegmentMetaData
  • org.apache.ctakes.core.sentence.SentenceDetectorCtakes
  • org.apache.ctakes.core.sentence.SentenceSpan
  • org.apache.ctakes.dictionary.lookup.filter.SetValuePostLookupFilterImpl (implements org.apache.ctakes.dictionary.lookup.MetaDataHitConst, org.apache.ctakes.dictionary.lookup.filter.PostLookupFilter)
  • org.apache.ctakes.sideeffect.util.SEUtil
  • org.apache.ctakes.assertion.pipelines.SharpCorpusSplit
  • org.apache.ctakes.core.util.SHARPKnowtatorXMLDefaults
  • org.apache.lucene.search.similarities.Similarity
    • org.apache.lucene.search.similarities.TFIDFSimilarity
      • org.apache.lucene.search.similarities.DefaultSimilarity
        • org.apache.ctakes.utils.wiki.ApproximateSimilarity
  • org.apache.ctakes.core.ae.SimpleSegmentAnnotatorTests
  • org.apache.ctakes.utils.tree.SimpleTree
  • org.mitre.medfacts.i2b2.api.SingleDocumentProcessor
    • org.apache.ctakes.assertion.medfacts.i2b2.api.SingleDocumentProcessorCtakes
  • org.apache.ctakes.temporal.utils.SMOTEplus
  • org.apache.ctakes.coreference.eval.helpers.Span
  • org.apache.ctakes.assertion.cr.Span
  • org.apache.ctakes.relationextractor.knowtator.Span
  • org.apache.ctakes.coreference.eval.helpers.SpanAlignment
  • org.apache.ctakes.coreference.eval.helpers.SpanOffsetComparator (implements java.util.Comparator<T>)
  • org.apache.ctakes.relationextractor.data.Splitter
  • org.apache.ctakes.dependency.parser.util.SRLUtility
  • org.apache.ctakes.drugner.elements.StartDateElement
  • net.openai.util.fsm.State (implements java.io.Serializable)
    • org.apache.ctakes.core.fsm.state.NamedState
      • org.apache.ctakes.drugner.fsm.states.util.IndentStartState
      • org.apache.ctakes.core.fsm.state.NonTerminalEndState
  • org.apache.ctakes.relationextractor.data.Stats
  • org.apache.ctakes.necontexts.StatusAnnotatorTests
  • org.apache.ctakes.core.fsm.machine.StatusIndicatorFSM
  • org.apache.ctakes.drugner.fsm.machines.util.StatusIndicatorFSM
  • org.apache.ctakes.drugner.elements.StrengthElement
  • org.apache.ctakes.drugner.fsm.machines.elements.StrengthFSM
  • org.apache.ctakes.drugner.elements.StrengthUnitElement
  • org.apache.ctakes.drugner.fsm.machines.elements.StrengthUnitFSM
  • org.apache.ctakes.core.resource.StringIntegerMapResourceImpl (implements org.apache.uima.resource.SharedResourceObject, org.apache.ctakes.core.resource.StringIntegerMapResource)
  • org.apache.ctakes.core.resource.StringMapResourceImpl (implements org.apache.uima.resource.SharedResourceObject, org.apache.ctakes.core.resource.StringMapResource)
  • org.apache.ctakes.dictionary.lookup.filter.StringPreLookupFilterImpl (implements org.apache.ctakes.dictionary.lookup.filter.PreLookupFilter)
  • org.apache.ctakes.dictionary.lookup.strtable.StringTable
  • org.apache.ctakes.dictionary.lookup.strtable.StringTableFactory
  • org.apache.ctakes.dictionary.lookup.strtable.StringTableRow
  • org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier
  • org.apache.ctakes.assertion.attributes.features.SubjectFeaturesExtractor (implements org.cleartk.classifier.feature.extractor.simple.SimpleFeatureExtractor)
  • org.apache.ctakes.drugner.fsm.machines.util.SubSectionIndicatorFSM (implements org.apache.ctakes.core.fsm.machine.FSM)
  • org.apache.ctakes.padtermspotter.fsm.pad.machine.SubSectionPadIdFSM
  • org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM
  • org.apache.ctakes.core.resource.SuffixMaxentModelResourceImpl (implements org.apache.ctakes.core.resource.MaxentModelResource, org.apache.uima.resource.SharedResourceObject)
  • org.apache.ctakes.drugner.fsm.machines.util.SuffixStrengthFSM
  • org.apache.ctakes.assertion.medfacts.cleartk.extractors.SurroundingExtractor (implements org.cleartk.classifier.feature.extractor.simple.SimpleFeatureExtractor)
  • org.apache.ctakes.coreference.util.SvmUtils
  • org.apache.ctakes.coreference.util.SvmVectorCreator
  • org.apache.ctakes.postagger.TagDictionaryCreator
  • org.apache.ctakes.postagger.test.TagDictionaryCreatorTests
  • org.apache.ctakes.temporal.ae.feature.TemporalPathExtractor (implements org.apache.ctakes.relationextractor.ae.features.RelationFeaturesExtractor)
  • org.apache.ctakes.temporal.ae.feature.TemporalPETExtractor (implements org.apache.ctakes.relationextractor.ae.features.RelationFeaturesExtractor)
  • org.apache.ctakes.coreference.eval.helpers.Test
  • org.apache.ctakes.dependency.parser.ae.util.TestClearNLPAnalysisEngines
  • org.apache.ctakes.utils.wiki.TestCosineSimilarity
  • org.apache.ctakes.preprocessor.test.TestDriver
  • org.apache.ctakes.utils.test.TestUtil
  • org.apache.ctakes.coreference.util.TextMatch
  • org.apache.ctakes.drugner.elements.TextMentionElement
  • org.apache.ctakes.core.ci.TextModification
  • java.lang.Thread (implements java.lang.Runnable)
    • org.apache.ctakes.postagger.test.CpeTests
    • org.apache.ctakes.coreference.treekernel.training.RowFillerThread
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • org.apache.ctakes.dictionary.lookup.DictionaryException
      • org.apache.ctakes.dictionary.lookup.filter.FilterException
  • org.apache.ctakes.temporal.eval.THYMEData
  • org.apache.ctakes.core.fsm.machine.TimeFSM
  • org.apache.ctakes.core.nlp.tokenizer.Token
  • org.apache.ctakes.core.ae.TokenConverter
  • org.apache.ctakes.core.fsm.token.adapter.TokenConverter
  • org.apache.ctakes.relationextractor.ae.features.TokenFeaturesExtractor (implements org.apache.ctakes.relationextractor.ae.features.RelationFeaturesExtractor)
  • org.apache.ctakes.core.nlp.tokenizer.Tokenizer
  • org.apache.ctakes.core.ae.TokenizerAnnotatorPTBTests
  • org.apache.ctakes.core.nlp.tokenizer.TokenizerHelper
  • org.apache.ctakes.core.nlp.tokenizer.TokenizerPTB
  • org.apache.uima.jcas.cas.TOP_Type
    • org.apache.uima.jcas.cas.AnnotationBase_Type
      • org.apache.uima.jcas.tcas.Annotation_Type
        • org.apache.ctakes.assertion.medfacts.types.Assertion_Type
        • org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type
        • org.apache.ctakes.smokingstatus.type.libsvm.AttributeValue_Type
          • org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue_Type
          • org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue_Type
          • org.apache.ctakes.smokingstatus.type.libsvm.NumericAttributeValue_Type
          • org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue_Type
        • org.apache.ctakes.typesystem.type.syntax.BaseToken_Type
          • org.apache.ctakes.typesystem.type.syntax.ContractionToken_Type
          • org.apache.ctakes.typesystem.type.syntax.NewlineToken_Type
          • org.apache.ctakes.typesystem.type.syntax.NumToken_Type
          • org.apache.ctakes.typesystem.type.syntax.PunctuationToken_Type
          • org.apache.ctakes.typesystem.type.syntax.SymbolToken_Type
          • org.apache.ctakes.typesystem.type.syntax.WordToken_Type
        • org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree_Type
        • org.apache.ctakes.typesystem.type.syntax.Chunk_Type
          • org.apache.ctakes.typesystem.type.syntax.ADJP_Type
          • org.apache.ctakes.typesystem.type.syntax.ADVP_Type
          • org.apache.ctakes.typesystem.type.syntax.CONJP_Type
          • org.apache.ctakes.typesystem.type.syntax.INTJ_Type
          • org.apache.ctakes.typesystem.type.syntax.LST_Type
          • org.apache.ctakes.typesystem.type.syntax.NP_Type
          • org.apache.ctakes.typesystem.type.syntax.O_Type
          • org.apache.ctakes.typesystem.type.syntax.PP_Type
          • org.apache.ctakes.typesystem.type.syntax.PRT_Type
          • org.apache.ctakes.typesystem.type.syntax.SBAR_Type
          • org.apache.ctakes.typesystem.type.syntax.UCP_Type
          • org.apache.ctakes.typesystem.type.syntax.VP_Type
        • org.apache.ctakes.drugner.type.ChunkAnnotation_Type
        • org.apache.ctakes.assertion.medfacts.types.Concept_Type
        • org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
        • org.apache.ctakes.drugner.type.DecimalStrengthAnnotation_Type
        • org.apache.ctakes.smokingstatus.type.libsvm.DocumentID_Type
        • org.apache.ctakes.drugner.type.DosagesAnnotation_Type
        • org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation_Type
        • org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation_Type
        • org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
        • org.apache.ctakes.drugner.type.DurationAnnotation_Type
        • org.apache.ctakes.drugner.type.FormAnnotation_Type
        • org.apache.ctakes.drugner.type.FractionStrengthAnnotation_Type
        • org.apache.ctakes.drugner.type.FrequencyAnnotation_Type
        • org.apache.ctakes.drugner.type.FrequencyUnitAnnotation_Type
        • org.apache.ctakes.assertion.zoner.types.Heading_Type
        • org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
          • org.apache.ctakes.typesystem.type.textsem.ContextAnnotation_Type
          • org.apache.ctakes.typesystem.type.textsem.DateAnnotation_Type
          • org.apache.ctakes.typesystem.type.textsem.EntityMention_Type
            • org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention_Type
          • org.apache.ctakes.typesystem.type.textsem.EventMention_Type
            • org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
            • org.apache.ctakes.typesystem.type.textsem.LabMention_Type
            • org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
            • org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
            • org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
            • org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
          • org.apache.ctakes.typesystem.type.textsem.FractionAnnotation_Type
          • org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation_Type
          • org.apache.ctakes.typesystem.type.textsem.Modifier_Type
            • org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.BodySideModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.ConditionalModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.CourseModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.GenericModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.LabValueModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.PolarityModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.SeverityModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.SubjectModifier_Type
            • org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier_Type
          • org.apache.ctakes.smokingstatus.type.NonSmokerNamedEntityAnnotation_Type
          • org.apache.ctakes.padtermspotter.type.PADHit_Type
          • org.apache.ctakes.padtermspotter.type.PADLocation_Type
          • org.apache.ctakes.padtermspotter.type.PADTerm_Type
          • org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation_Type
          • org.apache.ctakes.typesystem.type.textsem.RangeAnnotation_Type
          • org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation_Type
          • org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation_Type
          • org.apache.ctakes.typesystem.type.textsem.TimeAnnotation_Type
          • org.apache.ctakes.typesystem.type.textsem.TimeMention_Type
          • org.apache.ctakes.smokingstatus.type.UnknownSmokerNamedEntityAnnotation_Type
        • org.apache.ctakes.typesystem.type.textspan.List_Type
        • org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation_Type
        • org.apache.ctakes.coreference.type.Markable_Type
          • org.apache.ctakes.coreference.type.DemMarkable_Type
          • org.apache.ctakes.coreference.type.NEMarkable_Type
          • org.apache.ctakes.coreference.type.PronounMarkable_Type
        • org.apache.ctakes.coreference.type.MarkablePairSet_Type
        • org.apache.ctakes.typesystem.type.textspan.Paragraph_Type
        • org.apache.ctakes.typesystem.type.textsem.Predicate_Type
        • org.apache.ctakes.sideeffect.type.PSESentence_Type
        • org.apache.ctakes.sideeffect.type.PSESentenceFeature_Type
        • org.apache.ctakes.drugner.type.RangeStrengthAnnotation_Type
        • org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type
        • org.apache.ctakes.drugner.type.RouteAnnotation_Type
        • org.apache.ctakes.typesystem.type.textspan.Segment_Type
        • org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type
        • org.apache.ctakes.typesystem.type.textspan.Sentence_Type
        • org.apache.ctakes.sideeffect.type.SESentence_Type
        • org.apache.ctakes.sideeffect.type.SideEffectAnnotation_Type
        • org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification_Type
        • org.apache.ctakes.drugner.type.StrengthAnnotation_Type
        • org.apache.ctakes.drugner.type.StrengthUnitAnnotation_Type
        • org.apache.ctakes.padtermspotter.type.SubSection_Type
        • org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
        • org.apache.ctakes.assertion.zoner.types.Subzone_Type
        • org.apache.ctakes.drugner.type.SuffixStrengthAnnotation_Type
        • org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
          • org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode_Type
          • org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type
        • org.apache.ctakes.assertion.zoner.types.Zone_Type
    • org.apache.ctakes.coreference.type.BooleanLabeledFS_Type
    • org.apache.ctakes.typesystem.type.structured.Demographics_Type
    • org.apache.ctakes.typesystem.type.structured.DocumentClassification_Type
    • org.apache.ctakes.typesystem.type.structured.DocumentID_Type
    • org.apache.ctakes.typesystem.type.refsem.Element_Type
      • org.apache.ctakes.typesystem.type.refsem.Attribute_Type
        • org.apache.ctakes.typesystem.type.refsem.BodyLaterality_Type
        • org.apache.ctakes.typesystem.type.refsem.BodySide_Type
        • org.apache.ctakes.typesystem.type.refsem.Course_Type
        • org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag_Type
        • org.apache.ctakes.typesystem.type.refsem.LabReferenceRange_Type
        • org.apache.ctakes.typesystem.type.refsem.LabValue_Type
        • org.apache.ctakes.typesystem.type.refsem.MedicationDosage_Type
        • org.apache.ctakes.typesystem.type.refsem.MedicationDuration_Type
        • org.apache.ctakes.typesystem.type.refsem.MedicationForm_Type
        • org.apache.ctakes.typesystem.type.refsem.MedicationFrequency_Type
        • org.apache.ctakes.typesystem.type.refsem.MedicationRoute_Type
        • org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange_Type
        • org.apache.ctakes.typesystem.type.refsem.MedicationStrength_Type
        • org.apache.ctakes.typesystem.type.refsem.ProcedureDevice_Type
        • org.apache.ctakes.typesystem.type.refsem.ProcedureMethod_Type
        • org.apache.ctakes.typesystem.type.refsem.Severity_Type
      • org.apache.ctakes.typesystem.type.refsem.Date_Type
      • org.apache.ctakes.typesystem.type.refsem.Entity_Type
        • org.apache.ctakes.typesystem.type.refsem.AnatomicalSite_Type
      • org.apache.ctakes.typesystem.type.refsem.Event_Type
        • org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
        • org.apache.ctakes.typesystem.type.refsem.Lab_Type
        • org.apache.ctakes.typesystem.type.refsem.Medication_Type
        • org.apache.ctakes.typesystem.type.refsem.Procedure_Type
        • org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
      • org.apache.ctakes.typesystem.type.refsem.Time_Type
    • org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
    • org.apache.ctakes.typesystem.type.syntax.Lemma_Type
    • org.apache.ctakes.coreference.type.MarkablePair_Type
    • org.apache.ctakes.typesystem.type.structured.Metadata_Type
    • org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type
      • org.apache.ctakes.typesystem.type.refsem.UmlsConcept_Type
    • org.apache.ctakes.typesystem.type.util.Pair_Type
    • org.apache.ctakes.coreference.type.Pair_Type
    • org.apache.ctakes.typesystem.type.util.Pairs_Type
      • org.apache.ctakes.typesystem.type.util.ProbabilityDistribution_Type
    • org.apache.ctakes.typesystem.type.relation.Relation_Type
      • org.apache.ctakes.typesystem.type.relation.AttributeRelation_Type
        • org.apache.ctakes.typesystem.type.relation.DegreeOf_Type
      • org.apache.ctakes.typesystem.type.relation.BinaryTextRelation_Type
        • org.apache.ctakes.typesystem.type.relation.AffectsTextRelation_Type
        • org.apache.ctakes.typesystem.type.relation.AspectualTextRelation_Type
        • org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation_Type
        • org.apache.ctakes.typesystem.type.relation.CoreferenceRelation_Type
        • org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation_Type
        • org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation_Type
        • org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation_Type
        • org.apache.ctakes.typesystem.type.relation.ManifestationOfTextRelation_Type
        • org.apache.ctakes.typesystem.type.relation.ResultOfTextRelation_Type
        • org.apache.ctakes.typesystem.type.syntax.StanfordDependency_Type
        • org.apache.ctakes.typesystem.type.relation.TemporalTextRelation_Type
        • org.apache.ctakes.typesystem.type.relation.UMLSRelation_Type
      • org.apache.ctakes.typesystem.type.relation.CollectionTextRelation_Type
      • org.apache.ctakes.typesystem.type.relation.ElementRelation_Type
        • org.apache.ctakes.typesystem.type.relation.Affects_Type
        • org.apache.ctakes.typesystem.type.relation.LocationOf_Type
        • org.apache.ctakes.typesystem.type.relation.ManifestationOf_Type
        • org.apache.ctakes.typesystem.type.relation.ResultOf_Type
        • org.apache.ctakes.typesystem.type.relation.TemporalRelation_Type
      • org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type
    • org.apache.ctakes.typesystem.type.relation.RelationArgument_Type
    • org.apache.ctakes.typesystem.type.structured.SourceData_Type
  • org.cleartk.classifier.feature.transform.TrainableExtractor_ImplBase<OUTCOME_T> (implements org.cleartk.classifier.feature.transform.TrainableExtractor<OUTCOME_T>)
    • org.apache.ctakes.temporal.ae.feature.selection.FeatureSelection<OUTCOME_T> (implements com.google.common.base.Predicate<T>)
      • org.apache.ctakes.temporal.ae.feature.selection.Chi2FeatureSelection<OUTCOME_T>
      • org.apache.ctakes.temporal.ae.feature.selection.MutualInformationFeatureSelection<OUTCOME_T>
  • org.apache.ctakes.assertion.medfacts.cleartk.TrainAssertionModel
  • org.apache.ctakes.constituency.parser.treekernel.TreeExtractor
  • org.apache.ctakes.relationextractor.ae.features.TreeFragmentFeatureExtractor (implements org.apache.ctakes.relationextractor.ae.features.RelationFeaturesExtractor)
  • org.apache.ctakes.coreference.treekernel.training.TreeKernelTrainer (implements org.apache.ctakes.coreference.util.ThreadDelegator)
  • org.apache.ctakes.constituency.parser.util.TreeUtils
  • org.apache.ctakes.dictionary.lookup.filter.TruncateCollectionFilterImpl (implements org.apache.ctakes.dictionary.lookup.filter.CollectionFilter)
  • org.apache.ctakes.smokingstatus.util.TruthValue
  • org.apache.ctakes.assertion.medfacts.cleartk.extractors.UncertaintyWordWindowExtractor (implements org.cleartk.classifier.feature.extractor.simple.SimpleFeatureExtractor)
  • org.apache.ctakes.preprocessor.Utility
  • org.apache.ctakes.relationextractor.ae.baselines.Utils
  • org.apache.ctakes.dictionary.lookup.phrasebuilder.VariantPhraseBuilderImpl (implements org.apache.ctakes.dictionary.lookup.phrasebuilder.PhraseBuilder)
  • org.apache.ctakes.dictionary.lookup.phrasebuilder.VariantPhraseBuilderImpl.AttributeTextImpl
  • org.apache.ctakes.dictionary.lookup.phrasebuilder.VariantPhraseBuilderImpl.OriginalTextImpl
  • org.apache.ctakes.utils.wiki.WikiIndex
  • org.apache.ctakes.relationextractor.ae.features.WordNetFeatureExtractor
  • org.apache.ctakes.relationextractor.ae.features.WordNetUtils
  • org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors
  • org.apache.ctakes.utils.xcas_comparison.XcasAnnotation (implements java.lang.Cloneable, java.lang.Comparable<T>)
  • org.apache.ctakes.utils.xcas_comparison.XcasDiff
  • org.apache.ctakes.utils.xcas_comparison.XcasFile (implements java.lang.Cloneable)
  • org.apache.ctakes.assertion.cr.XMLReader
  • org.apache.ctakes.relationextractor.knowtator.XMLReader

Interface Hierarchy

• org.apache.ctakes.core.fsm.token.BaseToken
  • org.apache.ctakes.core.fsm.token.CharacterToken
    • org.apache.ctakes.core.fsm.token.PunctuationToken
    • org.apache.ctakes.core.fsm.token.SymbolToken
  • org.apache.ctakes.core.fsm.token.ContractionToken
  • org.apache.ctakes.core.fsm.token.DecimalToken
  • org.apache.ctakes.core.fsm.token.EolToken
  • org.apache.ctakes.core.fsm.token.IntegerToken
  • org.apache.ctakes.core.fsm.token.NumberToken
    • org.apache.ctakes.core.fsm.token.DecimalToken
  • org.apache.ctakes.core.fsm.token.PunctuationToken
  • org.apache.ctakes.core.fsm.token.SymbolToken
  • org.apache.ctakes.core.fsm.token.TextToken
    • org.apache.ctakes.core.fsm.token.WordToken
  • org.apache.ctakes.core.fsm.token.WordToken
• org.apache.uima.collection.base_cpm.CasProcessor
  • org.apache.uima.collection.CasConsumer (also extends org.apache.uima.collection.base_cpm.CasObjectProcessor, org.apache.uima.resource.ConfigurableResource)
    • org.apache.ctakes.core.cc.NonTerminalConsumer
  • org.apache.uima.collection.base_cpm.CasObjectProcessor
    • org.apache.uima.collection.CasConsumer (also extends org.apache.uima.resource.ConfigurableResource)
      • org.apache.ctakes.core.cc.NonTerminalConsumer
    • org.apache.ctakes.core.cc.NonTerminalConsumer
  • org.apache.ctakes.core.cc.NonTerminalConsumer
• org.apache.ctakes.chunker.ae.ChunkCreator
• org.apache.ctakes.dictionary.lookup.filter.CollectionFilter
• org.apache.ctakes.smokingstatus.Const
• org.apache.ctakes.necontexts.ContextAnalyzer
• org.apache.ctakes.necontexts.ContextHitConsumer
• org.apache.ctakes.dictionary.lookup.Dictionary
• org.apache.ctakes.drugner.DrugModel
• org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
  • org.apache.ctakes.temporal.eval.EvaluationOfEventSpans.Options
• org.apache.ctakes.dictionary.lookup.strtable.FieldConstraint
• org.apache.ctakes.core.resource.FileResource
• org.apache.ctakes.core.fsm.machine.FSM
• org.apache.ctakes.core.resource.JdbcConnectionResource
• org.apache.ctakes.dictionary.lookup.algorithms.LookupAlgorithm
• org.apache.ctakes.dictionary.lookup.vo.LookupAnnotation
  • org.apache.ctakes.dictionary.lookup.vo.LookupToken
• org.apache.ctakes.dictionary.lookup.ae.LookupConsumer
• org.apache.ctakes.dictionary.lookup.ae.LookupInitializer
• org.apache.ctakes.core.resource.LuceneIndexReaderResource
• org.apache.ctakes.lvg.resource.LvgCmdApiResource
• org.apache.ctakes.core.resource.MaxentModelResource
• org.apache.ctakes.dictionary.lookup.MetaDataHit
• org.apache.ctakes.dictionary.lookup.MetaDataHitConst
• org.apache.ctakes.core.ae.OverlapAnnotator.Action
• org.apache.ctakes.constituency.parser.ParserWrapper
• org.apache.ctakes.dictionary.lookup.phrasebuilder.PhraseBuilder
• org.apache.ctakes.dictionary.lookup.filter.PostLookupFilter
• org.apache.ctakes.dictionary.lookup.filter.PreLookupFilter
• org.apache.ctakes.preprocessor.PreProcessor
• org.apache.ctakes.temporal.eval.PrintRelations.Options
• org.apache.ctakes.relationextractor.ae.features.RelationFeaturesExtractor
• org.apache.uima.resource.Resource
  • org.apache.uima.collection.CasConsumer (also extends org.apache.uima.collection.base_cpm.CasObjectProcessor, org.apache.uima.resource.ConfigurableResource)
    • org.apache.ctakes.core.cc.NonTerminalConsumer
  • org.apache.uima.resource.ConfigurableResource
    • org.apache.uima.collection.CasConsumer (also extends org.apache.uima.collection.base_cpm.CasObjectProcessor)
      • org.apache.ctakes.core.cc.NonTerminalConsumer
    • org.apache.ctakes.core.cc.NonTerminalConsumer
  • org.apache.ctakes.core.cc.NonTerminalConsumer
• org.apache.ctakes.temporal.utils.RunCorpusDiagnostics.Options
• org.apache.ctakes.core.resource.StringIntegerMapResource
• org.apache.ctakes.core.resource.StringMapResource
• org.apache.ctakes.core.resource.StringsResource
• org.apache.ctakes.core.ci.TextModifier
• org.apache.ctakes.coreference.util.ThreadDelegator

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.apache.ctakes.coreference.eval.helpers.PairType
    • org.apache.ctakes.coreference.eval.helpers.MatType
    • org.apache.ctakes.coreference.eval.helpers.KAlphaType
    • org.apache.ctakes.coreference.eval.helpers.CEAFType
    • org.apache.ctakes.coreference.eval.helpers.B3Type
    • org.apache.ctakes.dictionary.lookup.vo.LookupTokenComparator (implements java.util.Comparator<T>)
    • org.apache.ctakes.temporal.ae.feature.selection.MutualInformationFeatureSelection.CombineScoreMethod (implements com.google.common.base.Function<F,T>)
    • org.apache.ctakes.assertion.pipelines.SharpCorpusSplit.Subcorpus