A B C D E F G H I J K L M N O P Q R S T U V W X Z _

P

p1 - Variable in class org.apache.ctakes.relationextractor.data.CategoricalDistribution

p2 - Variable in class org.apache.ctakes.relationextractor.data.CategoricalDistribution

p3 - Variable in class org.apache.ctakes.relationextractor.data.CategoricalDistribution

PAD_STATUS - Static variable in class org.apache.ctakes.padtermspotter.fsm.output.IllnessDxIndicator

PADConsumerImpl - Class in org.apache.ctakes.padtermspotter.impl

PADConsumerImpl() - Constructor for class org.apache.ctakes.padtermspotter.impl.PADConsumerImpl

PADHit - Class in org.apache.ctakes.padtermspotter.type

Would represent one of the following Term (in the case of a stand alone term) Term + Location Location + term Updated by JCasGen Tue Apr 09 12:44:01 EDT 2013 XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml

PADHit() - Constructor for class org.apache.ctakes.padtermspotter.type.PADHit

Never called.

PADHit(int, TOP_Type) - Constructor for class org.apache.ctakes.padtermspotter.type.PADHit

Internal - constructor used by generator

PADHit(JCas) - Constructor for class org.apache.ctakes.padtermspotter.type.PADHit

PADHit(JCas, int, int) - Constructor for class org.apache.ctakes.padtermspotter.type.PADHit

PADHit_Type - Class in org.apache.ctakes.padtermspotter.type

Would represent one of the following Term (in the case of a stand alone term) Term + Location Location + term Updated by JCasGen Tue Apr 09 12:44:01 EDT 2013

PADHit_Type(JCas, Type) - Constructor for class org.apache.ctakes.padtermspotter.type.PADHit_Type

initialize variables to correspond with Cas Type and Features

PADHitAnnotator - Class in org.apache.ctakes.padtermspotter.ae

PADHitAnnotator() - Constructor for class org.apache.ctakes.padtermspotter.ae.PADHitAnnotator

PADHitAnnotator.HitComparator - Class in org.apache.ctakes.padtermspotter.ae

PADHitAnnotator.HitComparator() - Constructor for class org.apache.ctakes.padtermspotter.ae.PADHitAnnotator.HitComparator

PADLocation - Class in org.apache.ctakes.padtermspotter.type

Updated by JCasGen Tue Apr 09 12:44:01 EDT 2013 XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml

PADLocation() - Constructor for class org.apache.ctakes.padtermspotter.type.PADLocation

Never called.

PADLocation(int, TOP_Type) - Constructor for class org.apache.ctakes.padtermspotter.type.PADLocation

Internal - constructor used by generator

PADLocation(JCas) - Constructor for class org.apache.ctakes.padtermspotter.type.PADLocation

PADLocation(JCas, int, int) - Constructor for class org.apache.ctakes.padtermspotter.type.PADLocation

PADLocation_Type - Class in org.apache.ctakes.padtermspotter.type

Updated by JCasGen Tue Apr 09 12:44:01 EDT 2013

PADLocation_Type(JCas, Type) - Constructor for class org.apache.ctakes.padtermspotter.type.PADLocation_Type

initialize variables to correspond with Cas Type and Features

PADLocationConsumerImpl - Class in org.apache.ctakes.padtermspotter.impl

PADLocationConsumerImpl(UimaContext, Properties) - Constructor for class org.apache.ctakes.padtermspotter.impl.PADLocationConsumerImpl

PADOffSetsRecord - Class in org.apache.ctakes.padtermspotter.cc

PADOffSetsRecord() - Constructor for class org.apache.ctakes.padtermspotter.cc.PADOffSetsRecord

PADTerm - Class in org.apache.ctakes.padtermspotter.type

Updated by JCasGen Tue Apr 09 12:44:01 EDT 2013 XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml

PADTerm() - Constructor for class org.apache.ctakes.padtermspotter.type.PADTerm

Never called.

PADTerm(int, TOP_Type) - Constructor for class org.apache.ctakes.padtermspotter.type.PADTerm

Internal - constructor used by generator

PADTerm(JCas) - Constructor for class org.apache.ctakes.padtermspotter.type.PADTerm

PADTerm(JCas, int, int) - Constructor for class org.apache.ctakes.padtermspotter.type.PADTerm

PADTerm_Type - Class in org.apache.ctakes.padtermspotter.type

Updated by JCasGen Tue Apr 09 12:44:01 EDT 2013

PADTerm_Type(JCas, Type) - Constructor for class org.apache.ctakes.padtermspotter.type.PADTerm_Type

initialize variables to correspond with Cas Type and Features

PADTermConsumerImpl - Class in org.apache.ctakes.padtermspotter.impl

PADTermConsumerImpl(UimaContext, Properties) - Constructor for class org.apache.ctakes.padtermspotter.impl.PADTermConsumerImpl

Pair - Class in org.apache.ctakes.coreference.type

Updated by JCasGen Tue Apr 09 12:45:20 EDT 2013 XML source: trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml

Pair() - Constructor for class org.apache.ctakes.coreference.type.Pair

Never called.

Pair(int, TOP_Type) - Constructor for class org.apache.ctakes.coreference.type.Pair

Internal - constructor used by generator

Pair(JCas) - Constructor for class org.apache.ctakes.coreference.type.Pair

Pair - Class in org.apache.ctakes.typesystem.type.util

An Attribute-Value tuple.

Pair() - Constructor for class org.apache.ctakes.typesystem.type.util.Pair

Never called.

Pair(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.util.Pair

Internal - constructor used by generator

Pair(JCas) - Constructor for class org.apache.ctakes.typesystem.type.util.Pair

Pair_Type - Class in org.apache.ctakes.coreference.type

Updated by JCasGen Tue Apr 09 12:45:20 EDT 2013

Pair_Type(JCas, Type) - Constructor for class org.apache.ctakes.coreference.type.Pair_Type

initialize variables to correspond with Cas Type and Features

Pair_Type - Class in org.apache.ctakes.typesystem.type.util

An Attribute-Value tuple.

Pair_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.util.Pair_Type

initialize variables to correspond with Cas Type and Features

PairAttributeCalculator - Class in org.apache.ctakes.coreference.util

PairAttributeCalculator(JCas, Markable, Markable) - Constructor for class org.apache.ctakes.coreference.util.PairAttributeCalculator

Pairs - Class in org.apache.ctakes.typesystem.type.util

A brute force "hash" that stores multiple Pairs in a list.

Pairs() - Constructor for class org.apache.ctakes.typesystem.type.util.Pairs

Never called.

Pairs(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.util.Pairs

Internal - constructor used by generator

Pairs(JCas) - Constructor for class org.apache.ctakes.typesystem.type.util.Pairs

Pairs_Type - Class in org.apache.ctakes.typesystem.type.util

A brute force "hash" that stores multiple Pairs in a list.

Pairs_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.util.Pairs_Type

initialize variables to correspond with Cas Type and Features

PairType - Enum in org.apache.ctakes.coreference.eval.helpers

Paragraph - Class in org.apache.ctakes.typesystem.type.textspan

A text span corresponding to a paragraph, typically containing multiple sentences.

Paragraph() - Constructor for class org.apache.ctakes.typesystem.type.textspan.Paragraph

Never called.

Paragraph(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Paragraph

Internal - constructor used by generator

Paragraph(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Paragraph

Paragraph(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Paragraph

Paragraph_Type - Class in org.apache.ctakes.typesystem.type.textspan

A text span corresponding to a paragraph, typically containing multiple sentences.

Paragraph_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Paragraph_Type

initialize variables to correspond with Cas Type and Features

PARAM_ALLOWED_CLASSES - Static variable in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries

Name of configuration parameter that determines the allowed Classification values.

PARAM_ALTERNATE_ALGOR - Static variable in class org.apache.ctakes.padtermspotter.cc.PADOffSetsRecord

PARAM_ANNOTATION_CLASSES - Static variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.CopyFromGold

PARAM_ANNOTATION_TYPE - Static variable in class org.apache.ctakes.drugner.ae.impl.NegContextInitializerImpl

Specifies the parameter AnnotationType to iterate on, specified in the descriptor file.

PARAM_CHUNK_PATTERN - Static variable in class org.apache.ctakes.chunker.ae.adjuster.ChunkAdjuster

The pattern of chunks that trigger an adjustment.

PARAM_CLASSIFY_BOTH_DIRECTIONS - Static variable in class org.apache.ctakes.relationextractor.ae.EntityMentionPairRelationExtractorAnnotator

PARAM_CLASSIFY_BOTH_DIRECTIONS - Static variable in class org.apache.ctakes.relationextractor.pipelines.TreeFeatureConsumer

PARAM_COMMENT_STRING - Static variable in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader

Optional parameter specifies a comment string.

PARAM_COMMENT_STRING - Static variable in class org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader

Optional parameter specifies a comment string.

PARAM_DB_CONN_RESRC - Static variable in class org.apache.ctakes.core.cr.JdbcCollectionReader

Name of external resource for database connection.

PARAM_DELIMITER - Static variable in class org.apache.ctakes.sideeffect.cc.SideEffectCasConsumer

PARAM_DELIMITER - Static variable in class org.apache.ctakes.sideeffect.cc.SideEffectSentenceCasConsumer

PARAM_DELIMITER - Static variable in class org.apache.ctakes.smokingstatus.cc.RecordResolutionCasConsumer

The name of the parameter that is specifies the delimiter for the output file.

PARAM_DOCID_COLS - Static variable in class org.apache.ctakes.core.cr.JdbcCollectionReader

Optional parameter.

PARAM_DOCID_DELIMITER - Static variable in class org.apache.ctakes.core.cr.JdbcCollectionReader

Optional parameter.

PARAM_DOCTEXT_COL - Static variable in class org.apache.ctakes.core.cr.JdbcCollectionReader

Name of column from resultset that contains the document text.

PARAM_DRIVER_CLASS - Static variable in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl

JDBC driver ClassName.

PARAM_ENCODING - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads

Name of configuration parameter that contains the character encoding used by the input files.

PARAM_ENCODING - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader

Name of configuration parameter that contains the character encoding used by the input files.

PARAM_EXAM_COLUMN - Static variable in class org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader

The column number of the input file that contains the compare string to parse applicable exam types.

PARAM_EXTEND_TO_INCLUDE_TOKEN - Static variable in class org.apache.ctakes.chunker.ae.adjuster.ChunkAdjuster

The index of the token (within the pattern) to extend the end offset to include.

PARAM_EXTENSIONS - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads

Name of optional configuration parameter that specifies the extensions of the files that the collection reader will read.

PARAM_EXTENSIONS - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader

Name of optional configuration parameter that specifies the extensions of the files that the collection reader will read.

PARAM_FAILUNKNOWN - Static variable in class org.apache.ctakes.assertion.cr.XmiCollectionReaderCtakes

Name of the configuration parameter that must be set to indicate if the execution fails if an encountered type is unknown

PARAM_FAILUNKNOWN - Static variable in class org.apache.ctakes.core.cr.XmiCollectionReaderCtakes

Name of the configuration parameter that must be set to indicate if the execution fails if an encountered type is unknown

PARAM_FEATURE_SELECTION_THRESHOLD - Static variable in class org.apache.ctakes.temporal.ae.EventAnnotator

PARAM_FEATURE_SELECTION_URI - Static variable in class org.apache.ctakes.temporal.ae.EventAnnotator

PARAM_FILES - Static variable in class org.apache.ctakes.assertion.eval.XMIReader

PARAM_FILES - Static variable in class org.apache.ctakes.core.cr.XMIReader

PARAM_FILES - Static variable in class org.apache.ctakes.dependency.parser.ae.util.XMIReader

PARAM_FILES - Static variable in class org.apache.ctakes.relationextractor.eval.XMIReader

PARAM_FILTER_EXAMS - Static variable in class org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader

Specifies the file which contains the valid types of exams which will be processed by the pipeline.

PARAM_FNMATCH - Static variable in class org.apache.ctakes.assertion.cr.I2B2Challenge2010CollectionReader

PARAM_FRAGS - Static variable in class org.apache.ctakes.coreference.cc.ODIEVectorFileWriter

PARAM_GOLD_DIR - Static variable in class org.apache.ctakes.coreference.cc.ODIEVectorFileWriter

PARAM_GOLD_VIEW_NAME - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine

PARAM_ID_DELIMETER - Static variable in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader

Name of optional configuration parameter that specifies a character (or string) that delimits the id of the document from the text of the document.

PARAM_ID_DELIMETER - Static variable in class org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader

Name of optional configuration parameter that specifies a character (or string) that delimits the id of the document from the text of the document.

PARAM_IGNORE_BLANK_LINES - Static variable in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader

Optional parameter determines whether a blank line will be processed as a document or will be ignored.

PARAM_IGNORE_BLANK_LINES - Static variable in class org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader

Optional parameter determines whether a blank line will be processed as a document or will be ignored.

PARAM_IGNORE_SECTIONS - Static variable in class org.apache.ctakes.sideeffect.ae.PSESentenceAnnotator

PARAM_IGNORE_SECTIONS - Static variable in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries

Sections NOT to be entered in ClassifiableEntries

PARAM_IGNORE_WORDS - Static variable in class org.apache.ctakes.smokingstatus.ae.SentenceAdjuster

The list of words ("and" "&") to ignore in pattern matching.

PARAM_INPUT_FILE_NAME - Static variable in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader

This parameter will be used the descriptor file to specify the location of the file that will be run through this collection reader.

PARAM_INPUT_FILE_NAME - Static variable in class org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader

This parameter will be used the descriptor file to specify the location of the file that will be run through this collection reader.

PARAM_INPUTDIR - Static variable in class org.apache.ctakes.assertion.cr.GoldEntityAndAttributeReader

PARAM_INPUTDIR - Static variable in class org.apache.ctakes.assertion.cr.I2B2Challenge2010CollectionReader

PARAM_INPUTDIR - Static variable in class org.apache.ctakes.assertion.cr.XmiCollectionReaderCtakes

Name of configuration parameter that must be set to the path of a directory containing the XMI files.

PARAM_INPUTDIR - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads

Name of configuration parameter that must be set to the path of a directory containing input files.

PARAM_INPUTDIR - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader

Name of configuration parameter that must be set to the path of a directory containing input files.

PARAM_INPUTDIR - Static variable in class org.apache.ctakes.core.cr.XmiCollectionReaderCtakes

Name of configuration parameter that must be set to the path of a directory containing the XMI files.

PARAM_INPUTDIR - Static variable in class org.apache.ctakes.relationextractor.cr.GoldEntityAndRelationReader

PARAM_INPUTDIR - Static variable in class org.apache.ctakes.relationextractor.cr.GoldEntityReader

PARAM_ISOLATION - Static variable in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl

Transaction isolation level.

PARAM_KEEP_ALIVE - Static variable in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl

Flag that determines whether to keep JDBC connection open no matter what.

PARAM_KNOWTATOR_XML_DIRECTORY - Static variable in class org.apache.ctakes.temporal.ae.THYMEKnowtatorXMLReader

PARAM_LANGUAGE - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads

Name of optional configuration parameter that contains the language of the documents in the input directory.

PARAM_LANGUAGE - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader

Name of optional configuration parameter that contains the language of the documents in the input directory.

PARAM_LANGUAGE - Static variable in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader

Name of optional configuration parameter that contains the language of the documents in the input directory.

PARAM_LANGUAGE - Static variable in class org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader

Name of optional configuration parameter that contains the language of the documents in the input directory.

PARAM_LEMMA_CACHE_FILE_LOCATION - Static variable in class org.apache.ctakes.lvg.ae.LvgAnnotator

Value is "LemmaCacheFileLocation".

PARAM_LEMMA_CACHE_FILE_LOCATION - Static variable in class org.apache.ctakes.lvg.ae.LvgBaseTokenAnnotator

Value is "LemmaCacheFileLocation".

PARAM_LEMMA_CACHE_FREQUENCY_CUTOFF - Static variable in class org.apache.ctakes.lvg.ae.LvgAnnotator

Value is "LemmaCacheFrequencyCutoff".

PARAM_LEMMA_CACHE_FREQUENCY_CUTOFF - Static variable in class org.apache.ctakes.lvg.ae.LvgBaseTokenAnnotator

Value is "LemmaCacheFrequencyCutoff".

PARAM_LEMMATIZER_DATA_FILE - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE

PARAM_LEMMATIZER_DATA_FILE - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

PARAM_MODELFILE - Static variable in class org.apache.ctakes.constituency.parser.ae.ConstituencyParser

PARAM_NAME_DECODING_INPUT_DIRECTORY - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.TrainAssertionModel

PARAM_NAME_DECODING_OUTPUT_DIRECTORY - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.TrainAssertionModel

PARAM_NAME_MODEL_DIRECTORY - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.TrainAssertionModel

PARAM_NAME_TRAINING_INPUT_DIRECTORY - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.TrainAssertionModel

PARAM_NUMREADS - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads

Arguement to equate to # of times it should read the files.

PARAM_OUTFILE - Static variable in class org.apache.ctakes.relationextractor.pipelines.TreeFeatureConsumer

PARAM_OUTPUT_DIR - Static variable in class org.apache.ctakes.coreference.cc.ODIEVectorFileWriter

PARAM_OUTPUT_DIRECTORY - Static variable in class org.apache.ctakes.coreference.cc.PreprocessAndWriteXmi.SerializeDocumentToXMI

PARAM_OUTPUT_DIRECTORY - Static variable in class org.apache.ctakes.relationextractor.eval.PreprocessAndWriteXmi.SerializeDocumentToXMI

PARAM_OUTPUT_FILE - Static variable in class org.apache.ctakes.sideeffect.cc.SideEffectCasConsumer

PARAM_OUTPUT_FILE - Static variable in class org.apache.ctakes.sideeffect.cc.SideEffectSentenceCasConsumer

PARAM_OUTPUT_FILE - Static variable in class org.apache.ctakes.smokingstatus.cc.RecordResolutionCasConsumer

The name of the parameter that is specifies the path of the output file.

PARAM_OUTPUTDIR - Static variable in class org.apache.ctakes.core.cc.FilesInDirectoryCasConsumer

PARAM_OUTPUTDIR - Static variable in class org.apache.ctakes.core.cc.NormalizedFilesInDirectoryCasConsumer

PARAM_OUTPUTDIR - Static variable in class org.apache.ctakes.core.cc.TokenOffsetsCasConsumer

PARAM_OUTPUTDIR - Static variable in class org.apache.ctakes.core.cc.XmiWriterCasConsumerCtakes

Name of configuration parameter that must be set to the path of a directory into which the output files will be written.

PARAM_OUTPUTDIR - Static variable in class org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel

PARAM_OUTPUTFILE - Static variable in class org.apache.ctakes.padtermspotter.cc.PADOffSetsRecord

PARAM_OUTPUTFILE - Static variable in class org.apache.ctakes.padtermspotter.cc.RadialogyTermLookup

PARAM_PARSE_SECTIONS - Static variable in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries

Name of configuration parameter that determines whether section headers will be parsed out and Segments made to cover the section text.

PARAM_PARSER_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE

PARAM_PARSER_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPPOSTaggerAE

PARAM_PARSER_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

PARAM_PASSWORD - Static variable in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl

Password for db authentication.

PARAM_POST_LEMMAS - Static variable in class org.apache.ctakes.lvg.ae.LvgAnnotator

Value is "PostLemmas".

PARAM_POST_LEMMAS - Static variable in class org.apache.ctakes.lvg.ae.LvgBaseTokenAnnotator

Value is "PostLemmas".

PARAM_PRED_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

PARAM_PREFIX - Static variable in class org.apache.ctakes.assertion.pipelines.CtakesFileNamer

The parameter name for the configuration parameter that specifies a fixed prefix for all returned file names.

PARAM_PREFIX - Static variable in class org.apache.ctakes.core.util.CtakesFileNamer

The parameter name for the configuration parameter that specifies a fixed prefix for all returned file names.

PARAM_PRINT_ERRORS - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine

PARAM_PROBABILITY_OF_KEEPING_A_NEGATIVE_EXAMPLE - Static variable in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

PARAM_PROBABILITY_OF_KEEPING_A_NEGATIVE_EXAMPLE - Static variable in class org.apache.ctakes.temporal.ae.EventAnnotator

PARAM_PROBABILITY_OF_KEEPING_DEFAULT_EXAMPLE - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine

PARAM_RECURSE - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads

PARAM_RECURSE - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader

PARAM_RELATION_CATEGORY - Static variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.RemoveOtherRelations

PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations.RemoveCrossSentenceRelations

PARAM_ROLE_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

PARAM_SECTION_REGEX_FILE_URI - Static variable in class org.mitre.medfacts.uima.ZoneAnnotator

PARAM_SEGMENTS_MEDICATION_RELATED - Static variable in class org.apache.ctakes.drugner.ae.DrugMentionAnnotator

This identifies the section ids that will be considered in generating DrugMentionAnnotaitons

PARAM_SEGMENTS_TO_SKIP - Static variable in class org.apache.ctakes.core.ae.SentenceDetector

Value is "SegmentsToSkip".

PARAM_SEGMENTS_TO_SKIP - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator

Value is "SegmentsToSkip".

PARAM_SEGMENTS_TO_SKIP - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotatorPTB

Value is "SegmentsToSkip".

PARAM_SEGMENTS_TO_SKIP - Static variable in class org.apache.ctakes.drugner.ae.CopyDrugAnnotator

Value is "sectionOverrideSet".

PARAM_SET_DEFAULTS - Static variable in class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader

PARAM_SMOKING_STATUS_DESC_STEP1KEY - Static variable in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries

Name of configuration parameter that must be set to the filepath of the UIMA descriptor ProductionPostSentenceAggregate.xml

PARAM_SMOKING_STATUS_DESC_STEP2KEY - Static variable in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries

PARAM_SMOTE_NUM_NEIGHBORS - Static variable in class org.apache.ctakes.temporal.ae.EventAnnotator

PARAM_SQL - Static variable in class org.apache.ctakes.core.cr.JdbcCollectionReader

SQL statement to retrieve the document.

PARAM_STOPS - Static variable in class org.apache.ctakes.coreference.cc.ODIEVectorFileWriter

PARAM_SUFFIX - Static variable in class org.apache.ctakes.assertion.pipelines.CtakesFileNamer

The parameter name for the configuration parameter that specifies a fixed suffix for all returned file names.

PARAM_SUFFIX - Static variable in class org.apache.ctakes.core.util.CtakesFileNamer

The parameter name for the configuration parameter that specifies a fixed suffix for all returned file names.

PARAM_TEXT_DIRECTORY - Static variable in class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader

PARAM_TOTAL_COLUMNS - Static variable in class org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader

Number of columns contained in the radiology record.

PARAM_TREES - Static variable in class org.apache.ctakes.coreference.cc.ODIEVectorFileWriter

PARAM_TRUTH_FILE - Static variable in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries

Name of configuration parameter that must be set to the filepath of the delimited truth file.

PARAM_TRUTH_FILE_DELIMITER - Static variable in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries

Name of configuration parameter that describes the character delimiter used in the delimited truth file.

PARAM_URL - Static variable in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl

JDBC URL that specifies db network location and db name.

PARAM_USE_LEMMA_CACHE - Static variable in class org.apache.ctakes.lvg.ae.LvgAnnotator

Value is "UseLemmaCache".

PARAM_USE_LEMMA_CACHE - Static variable in class org.apache.ctakes.lvg.ae.LvgBaseTokenAnnotator

Value is "UseLemmaCache".

PARAM_USE_LEMMATIZER - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE

PARAM_USERNAME - Static variable in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl

Username for db authentication.

PARAM_VALUE_FILE_RESRC - Static variable in class org.apache.ctakes.core.cr.JdbcCollectionReader

Optional parameter.

PARAM_VECTORS - Static variable in class org.apache.ctakes.coreference.cc.ODIEVectorFileWriter

PARAM_WORD_FREQ_FILE - Static variable in class org.apache.ctakes.core.cc.TokenFreqCasConsumer

The name of the parameter that is specifies the path of the output file in the descriptor file.

PARAM_WORDS_IN_PATTERN - Static variable in class org.apache.ctakes.smokingstatus.ae.SentenceAdjuster

The list of words ("none", "no", etc) used in the pattern

PARAM_XMI_DIRECTORY - Static variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.XMIReader

PARAM_XMI_DIRECTORY - Static variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.XMIWriter

ParamUtil - Class in org.apache.ctakes.core.util

ParamUtil() - Constructor for class org.apache.ctakes.core.util.ParamUtil

parent - Variable in class org.apache.ctakes.utils.tree.SimpleTree

ParentPtrTree - Class in org.apache.ctakes.coreference.util

ParentPtrTree(int) - Constructor for class org.apache.ctakes.coreference.util.ParentPtrTree

ParentPtrTree(int[][]) - Constructor for class org.apache.ctakes.coreference.util.ParentPtrTree

parse(URI) - Method in class org.apache.ctakes.core.knowtator.KnowtatorXMLParser

parse(JCas, String) - Static method in class org.apache.ctakes.core.util.DateParser

First try parsing full date (month, day and year) using java.util.Date If that fails, try extracting at least part of the date

parseDescriptor(File, UimaContext, int) - Static method in class org.apache.ctakes.dictionary.lookup.ae.LookupParseUtilities

parseDescriptor(File, UimaContext) - Static method in class org.apache.ctakes.dictionary.lookup.ae.LookupParseUtilities

parseDescriptor(File, UimaContext, int) - Static method in class org.apache.ctakes.dictionary.lookup.ae.LookupParseUtilitiesRefactor

parseDescriptor(File, UimaContext) - Static method in class org.apache.ctakes.dictionary.lookup.ae.LookupParseUtilitiesRefactor

parseDoubleValue(Object) - Method in class org.apache.ctakes.drugner.DrugMention

parseInt(String, Logger) - Static method in class org.apache.ctakes.core.ae.SentenceDetector

parseIntValue(Object) - Method in class org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel

parseIntValue(Object) - Method in class org.apache.ctakes.drugner.DrugMention

parser - Variable in class org.apache.ctakes.constituency.parser.ae.ConstituencyParser

parser - Variable in class org.apache.ctakes.constituency.parser.ae.ParserEvaluationAnnotator

parser - Variable in class org.apache.ctakes.constituency.parser.MaxentParserWrapper

parser - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE

ParserEvaluationAnnotator - Class in org.apache.ctakes.constituency.parser.ae

ParserEvaluationAnnotator() - Constructor for class org.apache.ctakes.constituency.parser.ae.ParserEvaluationAnnotator

parserModelUri - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE

parserModelUri - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPPOSTaggerAE

ParserTreeWriterConsumer - Class in org.apache.ctakes.constituency.parser.uima.co

ParserTreeWriterConsumer() - Constructor for class org.apache.ctakes.constituency.parser.uima.co.ParserTreeWriterConsumer

ParserWrapper - Interface in org.apache.ctakes.constituency.parser

parseScopeOrder(String[]) - Method in class org.apache.ctakes.necontexts.ContextAnnotator

parseStengthValue(Object) - Method in class org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel

parseTextDoublesMap(File, Charset) - Static method in class org.apache.ctakes.temporal.ae.feature.CoveredTextToValuesExtractor

parseTextDoublesMap(File, Charset) - Static method in class org.apache.ctakes.temporal.ae.feature.IdentifiedAnnotationFeatureExtractor

PartOfSpeechFeaturesExtractor - Class in org.apache.ctakes.relationextractor.ae.features

PartOfSpeechFeaturesExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.PartOfSpeechFeaturesExtractor

pat - Variable in class org.apache.ctakes.sideeffect.util.PatternMatch

PATCH - Static variable in class org.apache.ctakes.drugner.elements.FormElement

path - Variable in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator

pathToString(LinkedList<ConllDependencyNode>) - Static method in class org.apache.ctakes.relationextractor.ae.features.DependencyParseUtils

This will convert a path into a string lexicalized at the end points with arc labels and POS tags in between

PATIENT_LEVEL_PROCESSING - Static variable in class org.apache.ctakes.smokingstatus.cc.RecordResolutionCasConsumer

Specifies whether post process should be run which provides the patient level classification

PatientLevelSmokingStatus - Class in org.apache.ctakes.smokingstatus.patientLevel

Patient-level smoking status classification used for the AMIA 2009 paper From PatientLevelSmokingStatus_Jan09.java revised frequency based except for assigning past smoker if exists only past and non-smoker

PatientLevelSmokingStatus() - Constructor for class org.apache.ctakes.smokingstatus.patientLevel.PatientLevelSmokingStatus

PatternMatch - Class in org.apache.ctakes.sideeffect.util

Regular expression pattern match class used in SideEffectAnnotaor: Constructor: PatternMatch(String expr, String in, List kw): "expr" is an regular expression.

PatternMatch(String, String, List<String>) - Constructor for class org.apache.ctakes.sideeffect.util.PatternMatch

PatternMatch(String, String) - Constructor for class org.apache.ctakes.sideeffect.util.PatternMatch

paused() - Method in class org.apache.ctakes.postagger.test.CpeTests.StatusCallbackListenerImpl

Called when the CPM is paused.

paused() - Method in class org.apache.ctakes.regression.test.RegressionPipelineTest.StatusCallbackListenerImpl

Called when the CPM is paused.

PcsClassifierAnnotator_libsvm - Class in org.apache.ctakes.smokingstatus.ae

PcsClassifierAnnotator_libsvm() - Constructor for class org.apache.ctakes.smokingstatus.ae.PcsClassifierAnnotator_libsvm

performAction(Annotation, Annotation) - Method in interface org.apache.ctakes.core.ae.OverlapAnnotator.Action

performAction(Annotation, Annotation) - Method in class org.apache.ctakes.core.ae.OverlapAnnotator.DeleteActionImpl

performAction(Annotation, Annotation) - Method in class org.apache.ctakes.core.ae.OverlapAnnotator.ModifyActionImpl

PERIOD - Static variable in class org.apache.ctakes.core.nlp.tokenizer.TokenizerHelper

PermutationUtil - Class in org.apache.ctakes.dictionary.lookup.algorithms

PermutationUtil() - Constructor for class org.apache.ctakes.dictionary.lookup.algorithms.PermutationUtil

PersonTitleAnnotation - Class in org.apache.ctakes.typesystem.type.textsem

Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.PersonTitleAnnotation Updated by JCasGen Tue Apr 09 12:44:05 EDT 2013 XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml

PersonTitleAnnotation() - Constructor for class org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation

Never called.

PersonTitleAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation

Internal - constructor used by generator

PersonTitleAnnotation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation

PersonTitleAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation

PersonTitleAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem

Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.PersonTitleAnnotation Updated by JCasGen Tue Apr 09 12:44:05 EDT 2013

PersonTitleAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation_Type

initialize variables to correspond with Cas Type and Features

PersonTitleFSM - Class in org.apache.ctakes.core.fsm.machine

Uses one or more finite state machines to detect measurements in the given input of tokens.

PersonTitleFSM() - Constructor for class org.apache.ctakes.core.fsm.machine.PersonTitleFSM

Constructor

PersonTitleToken - Class in org.apache.ctakes.core.fsm.output

PersonTitleToken(int, int) - Constructor for class org.apache.ctakes.core.fsm.output.PersonTitleToken

PETFeatureExtractor - Class in org.apache.ctakes.relationextractor.ae.features

PETFeatureExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.PETFeatureExtractor

PhraseBuilder - Interface in org.apache.ctakes.dictionary.lookup.phrasebuilder

Interface for building phrases from LookupToken objects.

PhraseChunkingExtractor - Class in org.apache.ctakes.relationextractor.ae.features

PhraseChunkingExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.PhraseChunkingExtractor

PhraseTypeChunkCreator - Class in org.apache.ctakes.chunker.ae

This chunker creator creates annotations of type org.apache.ctakes.typesystem.type.* and sets the chunkType feature of the annotation to the passed in parameter chunkType.

PhraseTypeChunkCreator() - Constructor for class org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator

PILL - Static variable in class org.apache.ctakes.drugner.elements.FormElement

PolarityCleartkAnalysisEngine - Class in org.apache.ctakes.assertion.medfacts.cleartk

PolarityCleartkAnalysisEngine() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.PolarityCleartkAnalysisEngine

PolarityModifier - Class in org.apache.ctakes.typesystem.type.textsem

Used to indicate that a procedure or assertion did not occur or does not exist.

PolarityModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.PolarityModifier

Never called.

PolarityModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.PolarityModifier

Internal - constructor used by generator

PolarityModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.PolarityModifier

PolarityModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.PolarityModifier

PolarityModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem

Used to indicate that a procedure or assertion did not occur or does not exist.

PolarityModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.PolarityModifier_Type

initialize variables to correspond with Cas Type and Features

PolyKernel - Class in org.apache.ctakes.utils.kernel

PolyKernel(int, double, boolean) - Constructor for class org.apache.ctakes.utils.kernel.PolyKernel

PolyKernel() - Constructor for class org.apache.ctakes.utils.kernel.PolyKernel

populateMinorityClass() - Method in class org.apache.ctakes.temporal.utils.SMOTEplus

pos - Variable in class org.apache.ctakes.coreference.util.AnaphoricityAttributeCalculator

POS_DATA_FILE_PARAM - Static variable in class org.apache.ctakes.postagger.OpenNLPPOSCollectionReader

"PosDataFile" is a required, single, string parameter that specifies the location of a data file that contains part-of-speech data in it.

POS_MODEL_FILE_PARAM - Static variable in class org.apache.ctakes.postagger.POSTagger

"PosModelFile" is a required, single, string parameter that contains the file name of the part of speech tagger model.

POS_TAGGER_PATH - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors

positions - Variable in class org.apache.ctakes.utils.xcas_comparison.XcasFile

posSet - Variable in class org.apache.ctakes.lvg.ae.LvgAnnotator.LemmaLocalClass

posSet - Variable in class org.apache.ctakes.lvg.ae.LvgBaseTokenAnnotator.LemmaLocalClass

possibleContractionEndings - Static variable in class org.apache.ctakes.core.nlp.tokenizer.ContractionsPTB

possibleContractionEndings - Static variable in class org.apache.ctakes.core.nlp.tokenizer.HyphenatedPTB

postagger - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPPOSTaggerAE

POSTagger - Class in org.apache.ctakes.postagger

POSTagger() - Constructor for class org.apache.ctakes.postagger.POSTagger

POSTaggerTests - Class in org.apache.ctakes.postagger.test

POSTaggerTests() - Constructor for class org.apache.ctakes.postagger.test.POSTaggerTests

PostLookupFilter - Interface in org.apache.ctakes.dictionary.lookup.filter

PostLookupFilterGroupImpl - Class in org.apache.ctakes.dictionary.lookup.filter

Groups multiple PostLookupFilter objects together and applies boolean logic to them.

PostLookupFilterGroupImpl(PostLookupFilter[], int, boolean) - Constructor for class org.apache.ctakes.dictionary.lookup.filter.PostLookupFilterGroupImpl

Constructor

postprocess() - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.SingleDocumentProcessorCtakes

POWDER - Static variable in class org.apache.ctakes.drugner.elements.FormElement

PP - Class in org.apache.ctakes.typesystem.type.syntax

A prepositional phrase Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.PP Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013 XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml

PP() - Constructor for class org.apache.ctakes.typesystem.type.syntax.PP

Never called.

PP(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PP

Internal - constructor used by generator

PP(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PP

PP(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PP

PP_Type - Class in org.apache.ctakes.typesystem.type.syntax

A prepositional phrase Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.PP Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013

PP_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PP_Type

initialize variables to correspond with Cas Type and Features

ppt - Variable in class org.apache.ctakes.coreference.util.GoldStandardLabeler

Predicate - Class in org.apache.ctakes.typesystem.type.textsem

Predicates are typically verbs and may participate in SemanticRoleRelations.

Predicate() - Constructor for class org.apache.ctakes.typesystem.type.textsem.Predicate

Never called.

Predicate(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.Predicate

Internal - constructor used by generator

Predicate(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.Predicate

Predicate(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.Predicate

Predicate_Type - Class in org.apache.ctakes.typesystem.type.textsem

Predicates are typically verbs and may participate in SemanticRoleRelations.

Predicate_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.Predicate_Type

initialize variables to correspond with Cas Type and Features

PredicateArgumentExtractor - Class in org.apache.ctakes.temporal.ae.feature

PredicateArgumentExtractor(JCas) - Constructor for class org.apache.ctakes.temporal.ae.feature.PredicateArgumentExtractor

predict(svm_node[]) - Method in class org.apache.ctakes.coreference.util.AbstractClassifier

predict(svm_node[], TreebankNode) - Method in class org.apache.ctakes.coreference.util.AbstractClassifier

preExecutionTest() - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.SingleDocumentProcessorCtakes

PreLookupFilter - Interface in org.apache.ctakes.dictionary.lookup.filter

prepareXMIsFor(List<Integer>) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase

PrepositionFeatureExtractor - Class in org.apache.ctakes.relationextractor.ae.features

Features that indicate whether there is a preposition between the two arguments.

PrepositionFeatureExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.PrepositionFeatureExtractor

preprocess(File) - Static method in class org.apache.ctakes.assertion.eval.AssertionEvaluation

preprocess() - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.SingleDocumentProcessorCtakes

PreprocessAndWriteXmi - Class in org.apache.ctakes.coreference.cc

PreprocessAndWriteXmi() - Constructor for class org.apache.ctakes.coreference.cc.PreprocessAndWriteXmi

PreprocessAndWriteXmi - Class in org.apache.ctakes.relationextractor.eval

Use this to do batch preprocessing and conversion to CAS XMI files for use in experiments.

PreprocessAndWriteXmi() - Constructor for class org.apache.ctakes.relationextractor.eval.PreprocessAndWriteXmi

PreprocessAndWriteXmi.CopyDocumentTextToGoldView - Class in org.apache.ctakes.relationextractor.eval

PreprocessAndWriteXmi.CopyDocumentTextToGoldView() - Constructor for class org.apache.ctakes.relationextractor.eval.PreprocessAndWriteXmi.CopyDocumentTextToGoldView

PreprocessAndWriteXmi.DocumentIDAnnotator - Class in org.apache.ctakes.relationextractor.eval

Class for adding DocumentID annotations.

PreprocessAndWriteXmi.DocumentIDAnnotator() - Constructor for class org.apache.ctakes.relationextractor.eval.PreprocessAndWriteXmi.DocumentIDAnnotator

PreprocessAndWriteXmi.Options - Class in org.apache.ctakes.coreference.cc

PreprocessAndWriteXmi.Options() - Constructor for class org.apache.ctakes.coreference.cc.PreprocessAndWriteXmi.Options

PreprocessAndWriteXmi.Options - Class in org.apache.ctakes.relationextractor.eval

PreprocessAndWriteXmi.Options() - Constructor for class org.apache.ctakes.relationextractor.eval.PreprocessAndWriteXmi.Options

PreprocessAndWriteXmi.SerializeDocumentToXMI - Class in org.apache.ctakes.coreference.cc

PreprocessAndWriteXmi.SerializeDocumentToXMI() - Constructor for class org.apache.ctakes.coreference.cc.PreprocessAndWriteXmi.SerializeDocumentToXMI

PreprocessAndWriteXmi.SerializeDocumentToXMI - Class in org.apache.ctakes.relationextractor.eval

PreprocessAndWriteXmi.SerializeDocumentToXMI() - Constructor for class org.apache.ctakes.relationextractor.eval.PreprocessAndWriteXmi.SerializeDocumentToXMI

preprocessDir - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options

PreProcessor - Interface in org.apache.ctakes.preprocessor

print() - Method in class org.apache.ctakes.coreference.util.ParentPtrTree

printCommon() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasDiff

Prints common elements along with their attributes in the two XCAS files to stdout.

printDiff() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasDiff

Prints elements that are unique to each XCAS file to stdout.

printDiff(XcasFile, XcasFile) - Static method in class org.apache.ctakes.utils.xcas_comparison.XcasDiff

Prints elements that are unique to each XCAS file to stdout.

printErrors - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options

printErrors - Variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine

printErrors - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.Options

printErrors - Variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase

printHTML(Writer) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasDiff

Writes an HTML summary of the comparison of the two XCAS files.

printHTML(XcasFile, XcasFile, Writer) - Static method in class org.apache.ctakes.utils.xcas_comparison.XcasDiff

Writes an HTML summary of the comparison of the two specified XCAS files.

PrintRelations - Class in org.apache.ctakes.temporal.eval

PrintRelations() - Constructor for class org.apache.ctakes.temporal.eval.PrintRelations

PrintRelations.Options - Interface in org.apache.ctakes.temporal.eval

PrintRelationStatistics - Class in org.apache.ctakes.relationextractor.eval

PrintRelationStatistics() - Constructor for class org.apache.ctakes.relationextractor.eval.PrintRelationStatistics

PrintRelationStatistics.Options - Class in org.apache.ctakes.relationextractor.eval

PrintRelationStatistics.Options() - Constructor for class org.apache.ctakes.relationextractor.eval.PrintRelationStatistics.Options

printResults(String, List) - Static method in class org.apache.ctakes.dictionary.assertion.CreateAssertionLuceneIndexFromDelimitedFile

Prints out the tokenized results, for debug use.

printScore(Map<String, AnnotationStatistics>, String) - Static method in class org.apache.ctakes.assertion.eval.AssertionEvaluation

printToFile() - Static method in class org.apache.ctakes.smokingstatus.patientLevel.PatientLevelSmokingStatus

printUniq(int) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasDiff

Prints elements that are unique to XCAS file i.

printUsage() - Static method in class org.apache.ctakes.postagger.TagDictionaryCreator

prob - Variable in class org.apache.ctakes.coreference.ae.MarkableProb

ProbabilityDistribution - Class in org.apache.ctakes.typesystem.type.util

A brute force probability distribution for discrete variables.

ProbabilityDistribution() - Constructor for class org.apache.ctakes.typesystem.type.util.ProbabilityDistribution

Never called.

ProbabilityDistribution(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.util.ProbabilityDistribution

Internal - constructor used by generator

ProbabilityDistribution(JCas) - Constructor for class org.apache.ctakes.typesystem.type.util.ProbabilityDistribution

ProbabilityDistribution_Type - Class in org.apache.ctakes.typesystem.type.util

A brute force probability distribution for discrete variables.

ProbabilityDistribution_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.util.ProbabilityDistribution_Type

initialize variables to correspond with Cas Type and Features

probabilityOfKeepingADefaultExample - Variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine

probabilityOfKeepingANegativeExample - Variable in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

probabilityOfKeepingANegativeExample - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.ParameterSettings

probabilityOfKeepingANegativeExample - Variable in class org.apache.ctakes.temporal.ae.EventAnnotator

PROBABLE_STATUS - Static variable in class org.apache.ctakes.core.fsm.output.StatusIndicator

PROBABLE_STATUS - Static variable in class org.apache.ctakes.drugner.fsm.output.util.SubSectionIndicator

PROBABLE_STATUS - Static variable in class org.apache.ctakes.padtermspotter.fsm.output.SubSectionIndicator

problemSet - Static variable in class org.apache.ctakes.assertion.medfacts.ConceptLookup

Procedure - Class in org.apache.ctakes.typesystem.type.refsem

This is an Event from the UMLS semantic group of Procedures (except that Laboratory procedures are separate).

Procedure() - Constructor for class org.apache.ctakes.typesystem.type.refsem.Procedure

Never called.

Procedure(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Procedure

Internal - constructor used by generator

Procedure(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Procedure

Procedure_Type - Class in org.apache.ctakes.typesystem.type.refsem

This is an Event from the UMLS semantic group of Procedures (except that Laboratory procedures are separate).

Procedure_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Procedure_Type

initialize variables to correspond with Cas Type and Features

ProcedureDevice - Class in org.apache.ctakes.typesystem.type.refsem

Corresponds to the UMLS Devices semantic group: medical device and research device.

ProcedureDevice() - Constructor for class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice

Never called.

ProcedureDevice(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice

Internal - constructor used by generator

ProcedureDevice(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice

ProcedureDevice_Type - Class in org.apache.ctakes.typesystem.type.refsem

Corresponds to the UMLS Devices semantic group: medical device and research device.

ProcedureDevice_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice_Type

initialize variables to correspond with Cas Type and Features

ProcedureDeviceModifier - Class in org.apache.ctakes.typesystem.type.textsem

Corresponds to the UMLS Devices semantic group: medical device and research device.

ProcedureDeviceModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier

Never called.

ProcedureDeviceModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier

Internal - constructor used by generator

ProcedureDeviceModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier

ProcedureDeviceModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier

ProcedureDeviceModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem

Corresponds to the UMLS Devices semantic group: medical device and research device.

ProcedureDeviceModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier_Type

initialize variables to correspond with Cas Type and Features

ProcedureMention - Class in org.apache.ctakes.typesystem.type.textsem

A text string that refers to a (Procedure) Event.

ProcedureMention() - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureMention

Never called.

ProcedureMention(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureMention

Internal - constructor used by generator

ProcedureMention(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureMention

ProcedureMention(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureMention

ProcedureMention_Type - Class in org.apache.ctakes.typesystem.type.textsem

A text string that refers to a (Procedure) Event.

ProcedureMention_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type

initialize variables to correspond with Cas Type and Features

ProcedureMethod - Class in org.apache.ctakes.typesystem.type.refsem

The way or the equipment used to give or administration something (medication, test).

ProcedureMethod() - Constructor for class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod

Never called.

ProcedureMethod(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod

Internal - constructor used by generator

ProcedureMethod(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod

ProcedureMethod_Type - Class in org.apache.ctakes.typesystem.type.refsem

The way or the equipment used to give or administration something (medication, test).

ProcedureMethod_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod_Type

initialize variables to correspond with Cas Type and Features

ProcedureMethodModifier - Class in org.apache.ctakes.typesystem.type.textsem

The way or the equipment used to give or administration something (medication, test).

ProcedureMethodModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier

Never called.

ProcedureMethodModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier

Internal - constructor used by generator

ProcedureMethodModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier

ProcedureMethodModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier

ProcedureMethodModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem

The way or the equipment used to give or administration something (medication, test).

ProcedureMethodModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier_Type

initialize variables to correspond with Cas Type and Features

process(JCas) - Method in class org.apache.ctakes.assertion.attributes.GenericAttributeAnalysisEngine

process(JCas) - Method in class org.apache.ctakes.assertion.attributes.SubjectAttributeAnalysisEngine

process(JCas) - Method in class org.apache.ctakes.assertion.cr.GoldEntityAndAttributeReader

process(JCas) - Method in class org.apache.ctakes.assertion.eval.AssertionEvaluation.OnlyGoldAssertions

process(JCas) - Method in class org.apache.ctakes.assertion.eval.AssertionEvaluation.ReferenceAnnotationsSystemAssertionClearer

process(JCas) - Method in class org.apache.ctakes.assertion.eval.AssertionEvaluation.ReferenceIdentifiedAnnotationsSystemToGoldCopier

process(JCas) - Method in class org.apache.ctakes.assertion.eval.AssertionEvaluation.ReferenceSupportingAnnotationsSystemToGoldCopier

process(JCas) - Method in class org.apache.ctakes.assertion.eval.AssertionEvaluation.ReplaceCTakesEntityMentionsAndModifiersWithGold

process(JCas) - Method in class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine

process(JCas) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine

process(JCas) - Method in class org.apache.ctakes.assertion.medfacts.ConceptConverterAnalysisEngine

process(JCas) - Method in class org.apache.ctakes.chunker.ae.adjuster.ChunkAdjuster

Invokes this annotator's analysis logic.

process(JCas) - Method in class org.apache.ctakes.chunker.ae.Chunker

process(JCas) - Method in class org.apache.ctakes.clinicalpipeline.ae.ExtractionPrepAnnotator

Method invoked by UIMA framework to process a document

process(JCas) - Method in class org.apache.ctakes.constituency.parser.ae.ConstituencyParser

process(JCas) - Method in class org.apache.ctakes.constituency.parser.ae.ParserEvaluationAnnotator

process(JCas) - Method in class org.apache.ctakes.contexttokenizer.ae.ContextDependentTokenizerAnnotator

process(JCas) - Method in class org.apache.ctakes.core.ae.CopyAnnotator

process(JCas) - Method in class org.apache.ctakes.core.ae.DocumentIdPrinterAnalysisEngine

process(JCas) - Method in class org.apache.ctakes.core.ae.FilterAnnotator

Checks if the annotation is of the type to be retained.

process(JCas) - Method in class org.apache.ctakes.core.ae.NullAnnotator

process(JCas) - Method in class org.apache.ctakes.core.ae.OverlapAnnotator

process(JCas) - Method in class org.apache.ctakes.core.ae.SectionSegmentAnnotator

Entry point for processing.

process(JCas) - Method in class org.apache.ctakes.core.ae.SentenceDetector

Entry point for processing.

process(JCas) - Method in class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader

process(JCas) - Method in class org.apache.ctakes.core.ae.SimpleSegmentAnnotator

Entry point for processing.

process(JCas) - Method in class org.apache.ctakes.core.ae.SimpleSegmentWithTagsAnnotator

Entry point for processing.

process(JCas) - Method in class org.apache.ctakes.core.ae.TokenizerAnnotator

Entry point for processing.

process(JCas) - Method in class org.apache.ctakes.core.ae.TokenizerAnnotatorPTB

Entry point for processing.

process(JCas) - Method in class org.apache.ctakes.coreference.ae.MipacqMarkableCreator

process(JCas) - Method in class org.apache.ctakes.coreference.ae.MipacqMarkableExpander

process(JCas) - Method in class org.apache.ctakes.coreference.ae.MipacqMarkablePairGenerator

process(JCas) - Method in class org.apache.ctakes.coreference.ae.MipacqSvmChainCreator

process(JCas) - Method in class org.apache.ctakes.coreference.cc.ODIEVectorFileWriter

process(JCas) - Method in class org.apache.ctakes.coreference.cc.PreprocessAndWriteXmi.SerializeDocumentToXMI

process(JCas) - Method in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE

process(JCas) - Method in class org.apache.ctakes.dependency.parser.ae.ClearNLPPOSTaggerAE

process(JCas) - Method in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

process(JCas) - Method in class org.apache.ctakes.dependency.parser.ae.util.TestClearNLPAnalysisEngines.DumpClearNLPOutputAE

process(JCas) - Method in class org.apache.ctakes.dictionary.lookup.ae.DictionaryLookupAnnotator

Entry point for processing.

process(JCas) - Method in class org.apache.ctakes.dictionary.lookup.ae.ThreadedDictionaryLookupAnnotator

Entry point for processing.

process(JCas) - Method in class org.apache.ctakes.drugner.ae.CopyDrugAnnotator

process(JCas) - Method in class org.apache.ctakes.drugner.ae.DrugMentionAnnotator

process(JCas) - Method in class org.apache.ctakes.lvg.ae.LvgAnnotator

Invokes this annotator's analysis logic.

process(JCas) - Method in class org.apache.ctakes.lvg.ae.LvgBaseTokenAnnotator

Invokes this annotator's analysis logic.

process(JCas) - Method in class org.apache.ctakes.necontexts.ContextAnnotator

process(JCas) - Method in class org.apache.ctakes.padtermspotter.ae.PADHitAnnotator

process(JCas) - Method in class org.apache.ctakes.padtermspotter.ae.SubSectionAnnotator

process(JCas) - Method in class org.apache.ctakes.postagger.POSTagger

process(JCas) - Method in class org.apache.ctakes.preprocessor.ae.CdaCasInitializer

process(String) - Method in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

process(String) - Method in interface org.apache.ctakes.preprocessor.PreProcessor

Process a document to retrieve meta data about the document.

process(JCas) - Method in class org.apache.ctakes.relationextractor.ae.ModifierExtractorAnnotator

process(JCas) - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

process(JCas) - Method in class org.apache.ctakes.relationextractor.cr.GoldEntityAndRelationReader

process(JCas) - Method in class org.apache.ctakes.relationextractor.cr.GoldEntityReader

process(JCas) - Method in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator

process(JCas) - Method in class org.apache.ctakes.relationextractor.eval.ModifierExtractorEvaluation.OnlyGoldModifiers

process(JCas) - Method in class org.apache.ctakes.relationextractor.eval.PreprocessAndWriteXmi.CopyDocumentTextToGoldView

process(JCas) - Method in class org.apache.ctakes.relationextractor.eval.PreprocessAndWriteXmi.DocumentIDAnnotator

process(JCas) - Method in class org.apache.ctakes.relationextractor.eval.PreprocessAndWriteXmi.SerializeDocumentToXMI

process(JCas) - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.RemoveCTakesMentionsAndCopyGoldRelations

process(JCas) - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.RemoveOtherRelations

process(JCas) - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.RemoveSmallerEntityMentions

process(JCas) - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.ReplaceCTakesMentionsWithGoldMentions

process(JCas) - Method in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorConsumer

process(JCas) - Method in class org.apache.ctakes.relationextractor.pipelines.TreeFeatureConsumer

process(JCas) - Method in class org.apache.ctakes.sideeffect.ae.PSESentenceAnnotator

process(JCas, ResultSpecification) - Method in class org.apache.ctakes.sideeffect.ae.SESentenceClassifierAnnotator

process(JCas) - Method in class org.apache.ctakes.sideeffect.ae.SESentenceFeatureAnnotator

process(JCas) - Method in class org.apache.ctakes.sideeffect.ae.SideEffectAnnotator

process(JCas) - Method in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries

process(JCas) - Method in class org.apache.ctakes.smokingstatus.ae.KuRuleBasedClassifierAnnotator

process(JCas) - Method in class org.apache.ctakes.smokingstatus.ae.PcsClassifierAnnotator_libsvm

process(JCas) - Method in class org.apache.ctakes.smokingstatus.ae.ResolutionAnnotator

process(JCas) - Method in class org.apache.ctakes.smokingstatus.ae.SentenceAdjuster

Invokes this annotator's analysis logic.

process(JCas) - Method in class org.apache.ctakes.temporal.ae.DocTimeRelAnnotator

process(JCas, Segment) - Method in class org.apache.ctakes.temporal.ae.EventAnnotator

process(JCas) - Method in class org.apache.ctakes.temporal.ae.TemporalEntityAnnotator_ImplBase

process(JCas, Segment) - Method in class org.apache.ctakes.temporal.ae.TemporalEntityAnnotator_ImplBase

process(JCas, Segment) - Method in class org.apache.ctakes.temporal.ae.TimeAnnotator

process(JCas) - Method in class org.apache.ctakes.temporal.data.analysis.EventContextAnalysisConsumer

process(JCas) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.CopyFromGold

process(JCas) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.CopyNPChunksToLookupWindowAnnotations

process(JCas) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.EntityMentionRemover

process(JCas) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.SegmentsFromBracketedSectionTagsAnnotator

process(JCas) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.XMIReader

process(JCas) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.XMIWriter

process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventProperties.ClearEventProperties

process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations.RemoveCrossSentenceRelations

process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations.RemoveNonTLINKRelations

process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations.RemoveRelations

process(String) - Static method in class org.apache.ctakes.utils.xcas_comparison.XcasFile

Creates a new XcasFile object from the specified file.

process(File) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasProcessor

Parses the specified file and returns a parsed XcasFile object.

process(String) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasProcessor

Parses the specified file and returns a parsed XcasFile object.

process(JCas) - Method in class org.mitre.medfacts.uima.ZoneAnnotator

processAE(AnalysisEngine, File) - Static method in class org.apache.ctakes.utils.test.TestUtil

This method simply calls #createAnalysisEngineJCas(File, File, String) with the charSetName equal to "UTF-8".

processAE(AnalysisEngine, File, String) - Static method in class org.apache.ctakes.utils.test.TestUtil

This method reads in the text from the text file using the provided character set and then calls #getJCas(File, String)

processAE(AnalysisEngine, String) - Static method in class org.apache.ctakes.utils.test.TestUtil

This method creates a JCas for the provided analysis engine descriptor file and then processes the provided text and returns the JCas.

processCas(CAS) - Method in class org.apache.ctakes.constituency.parser.uima.co.ParserTreeWriterConsumer

processCas(CAS) - Method in class org.apache.ctakes.core.cc.CasConsumer

Create an xml file from the data in the cas.

processCas(CAS) - Method in class org.apache.ctakes.core.cc.FilesInDirectoryCasConsumer

processCas(CAS) - Method in class org.apache.ctakes.core.cc.HtmlTableCasConsumer

processCas(CAS) - Method in class org.apache.ctakes.core.cc.NormalizedFilesInDirectoryCasConsumer

processCas(CAS) - Method in class org.apache.ctakes.core.cc.TokenFreqCasConsumer

Iterates through all of the WordTokenAnnotation's, gets the covered text for each annotation and increments the frequency count for that text.

processCas(CAS) - Method in class org.apache.ctakes.core.cc.TokenOffsetsCasConsumer

processCas(CAS) - Method in class org.apache.ctakes.core.cc.XmiWriterCasConsumerCtakes

Processes the CAS which was populated by the TextAnalysisEngines.

processCas(CAS) - Method in class org.apache.ctakes.dependency.parser.DependencyNodeWriter

Create an xml file from the data in the cas.

processCas(CAS) - Method in class org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel

processCas(CAS) - Method in class org.apache.ctakes.padtermspotter.cc.PADOffSetsRecord

processCas(CAS) - Method in class org.apache.ctakes.padtermspotter.cc.RadialogyTermLookup

processCas(CAS) - Method in class org.apache.ctakes.sideeffect.cc.SideEffectCasConsumer

processCas(CAS) - Method in class org.apache.ctakes.sideeffect.cc.SideEffectSentenceCasConsumer

processCas(CAS) - Method in class org.apache.ctakes.smokingstatus.cc.RecordResolutionCasConsumer

processForEntityType(JCas, int, Class<? extends IdentifiedAnnotation>) - Method in class org.apache.ctakes.assertion.medfacts.ConceptConverterAnalysisEngine

processLine(String) - Method in class org.apache.ctakes.temporal.ae.feature.CoveredTextToValuesExtractor.StringToDoublesProcessor

processLine(String) - Method in class org.apache.ctakes.temporal.ae.feature.IdentifiedAnnotationFeatureExtractor.StringToDoublesProcessor

PRODIST - Static variable in class org.apache.ctakes.coreference.util.CorefConsts

PRON - Static variable in class org.apache.ctakes.coreference.util.CorefConsts

pron_coref_feats - Static variable in class org.apache.ctakes.coreference.util.FeatureVector

pronFeatSet - Static variable in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator

PronounMarkable - Class in org.apache.ctakes.coreference.type

Updated by JCasGen Tue Apr 09 12:45:20 EDT 2013 XML source: trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml

PronounMarkable() - Constructor for class org.apache.ctakes.coreference.type.PronounMarkable

Never called.

PronounMarkable(int, TOP_Type) - Constructor for class org.apache.ctakes.coreference.type.PronounMarkable

Internal - constructor used by generator

PronounMarkable(JCas) - Constructor for class org.apache.ctakes.coreference.type.PronounMarkable

PronounMarkable(JCas, int, int) - Constructor for class org.apache.ctakes.coreference.type.PronounMarkable

PronounMarkable_Type - Class in org.apache.ctakes.coreference.type

Updated by JCasGen Tue Apr 09 12:45:20 EDT 2013

PronounMarkable_Type(JCas, Type) - Constructor for class org.apache.ctakes.coreference.type.PronounMarkable_Type

initialize variables to correspond with Cas Type and Features

pronSelFeats - Static variable in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator

props - Variable in class org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedConsumerImpl

PRT - Class in org.apache.ctakes.typesystem.type.syntax

A particle, e.g., "out" in "rule out" Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.PRT Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013 XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml

PRT() - Constructor for class org.apache.ctakes.typesystem.type.syntax.PRT

Never called.

PRT(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PRT

Internal - constructor used by generator

PRT(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PRT

PRT(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PRT

PRT_Type - Class in org.apache.ctakes.typesystem.type.syntax

A particle, e.g., "out" in "rule out" Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.PRT Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013

PRT_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PRT_Type

initialize variables to correspond with Cas Type and Features

PSESentence - Class in org.apache.ctakes.sideeffect.type

sentence(s) that contains potential side effect and causing drug Updated by JCasGen Tue Apr 09 12:35:26 EDT 2013 XML source: trunk/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/types/TypeSystem.xml

PSESentence() - Constructor for class org.apache.ctakes.sideeffect.type.PSESentence

Never called.

PSESentence(int, TOP_Type) - Constructor for class org.apache.ctakes.sideeffect.type.PSESentence

Internal - constructor used by generator

PSESentence(JCas) - Constructor for class org.apache.ctakes.sideeffect.type.PSESentence

PSESentence(JCas, int, int) - Constructor for class org.apache.ctakes.sideeffect.type.PSESentence

PSESentence_Type - Class in org.apache.ctakes.sideeffect.type

sentence(s) that contains potential side effect and causing drug Updated by JCasGen Tue Apr 09 12:35:26 EDT 2013

PSESentence_Type(JCas, Type) - Constructor for class org.apache.ctakes.sideeffect.type.PSESentence_Type

initialize variables to correspond with Cas Type and Features

PSESentenceAnnotator - Class in org.apache.ctakes.sideeffect.ae

Identify the sentence(s) that contains PSE (signs/symptoms or disease/disorder) and drugs and add them to PSESentence.

PSESentenceAnnotator() - Constructor for class org.apache.ctakes.sideeffect.ae.PSESentenceAnnotator

PSESentenceFeature - Class in org.apache.ctakes.sideeffect.type

Updated by JCasGen Tue Apr 09 12:35:26 EDT 2013 XML source: trunk/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/types/TypeSystem.xml

PSESentenceFeature() - Constructor for class org.apache.ctakes.sideeffect.type.PSESentenceFeature

Never called.

PSESentenceFeature(int, TOP_Type) - Constructor for class org.apache.ctakes.sideeffect.type.PSESentenceFeature

Internal - constructor used by generator

PSESentenceFeature(JCas) - Constructor for class org.apache.ctakes.sideeffect.type.PSESentenceFeature

PSESentenceFeature(JCas, int, int) - Constructor for class org.apache.ctakes.sideeffect.type.PSESentenceFeature

PSESentenceFeature_Type - Class in org.apache.ctakes.sideeffect.type

Updated by JCasGen Tue Apr 09 12:35:26 EDT 2013

PSESentenceFeature_Type(JCas, Type) - Constructor for class org.apache.ctakes.sideeffect.type.PSESentenceFeature_Type

initialize variables to correspond with Cas Type and Features

ptPatt - Static variable in class org.apache.ctakes.utils.tree.SimpleTree

punctuationExpectedResults - Variable in class org.apache.ctakes.core.ae.TokenizerAnnotatorPTBTests

PunctuationFeatureExtractor - Class in org.apache.ctakes.relationextractor.ae.features

Features that capture punctuation marks between the two arguments.

PunctuationFeatureExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.PunctuationFeatureExtractor

punctuationTest - Variable in class org.apache.ctakes.core.ae.TokenizerAnnotatorPTBTests

PunctuationToken - Interface in org.apache.ctakes.core.fsm.token

PunctuationToken - Class in org.apache.ctakes.typesystem.type.syntax

Differentiates a token as being punctuation rather than a contraction, symbol, newline, word, or number.

PunctuationToken() - Constructor for class org.apache.ctakes.typesystem.type.syntax.PunctuationToken

Never called.

PunctuationToken(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PunctuationToken

Internal - constructor used by generator

PunctuationToken(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PunctuationToken

PunctuationToken(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PunctuationToken

PunctuationToken_Type - Class in org.apache.ctakes.typesystem.type.syntax

Differentiates a token as being punctuation rather than a contraction, symbol, newline, word, or number.

PunctuationToken_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PunctuationToken_Type

initialize variables to correspond with Cas Type and Features

PunctuationTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters

Adapts JCas token annotation to interface expected by the Context Dependent Tokenizer.

PunctuationTokenAdapter(PunctuationToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.PunctuationTokenAdapter

PunctuationTokenAdapter - Class in org.apache.ctakes.core.fsm.token.adapter

Adapts a Context Free Tokenizer token into a Context Dependent Tokenizer PunctuationToken.

PunctuationTokenAdapter(Token) - Constructor for class org.apache.ctakes.core.fsm.token.adapter.PunctuationTokenAdapter

PunctuationValueCondition - Class in org.apache.ctakes.core.fsm.condition

PunctuationValueCondition(char) - Constructor for class org.apache.ctakes.core.fsm.condition.PunctuationValueCondition