A B C D E F G H I J K L M N O P Q R S T U V W X Z _

S

s - Variable in class org.apache.ctakes.coreference.eval.helpers.Span

s - Variable in class org.apache.ctakes.coreference.util.AnaphoricityAttributeCalculator

sample() - Method in class org.apache.ctakes.relationextractor.data.CategoricalDistribution

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.CombineCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.DayNightWordCondition

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.DecimalCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.DecimalRangeCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.DecimalValueCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.DisjoinCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.HourMinuteCondition

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.IntegerCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.IntegerRangeCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.IntegerValueCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.NegateCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.NumberCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.PunctuationValueCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.RangeCondition

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.RomanNumeralCondition

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.SymbolValueCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.TextSetCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.TextValueCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.WordSetCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.WordValueCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.machine.RomanNumeralFSM.RomanNumeralCondition

satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.ContainsSetTextValueCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.DecimalStrengthStatusCondition

satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.DosageCondition

satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.DrugChangeStatusCondition

satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.FormCondition

satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.FractionCondition

satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.FractionStrengthCondition

satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.FrequencyUnitCondition

satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.RangeDosageCondition

satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.RangeStrengthCondition

satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.RouteCondition

satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.StrengthCondition

satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.StrengthUnitCombinedCondition

satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.StrengthUnitCondition

satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.TimeCondition

save(URI) - Method in class org.apache.ctakes.temporal.ae.feature.selection.Chi2FeatureSelection

save(URI) - Method in class org.apache.ctakes.temporal.ae.feature.selection.MutualInformationFeatureSelection.MutualInformationStats

save(URI) - Method in class org.apache.ctakes.temporal.ae.feature.selection.MutualInformationFeatureSelection

SBAR - Class in org.apache.ctakes.typesystem.type.syntax

A subordinate clause Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.SBAR Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013 XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml

SBAR() - Constructor for class org.apache.ctakes.typesystem.type.syntax.SBAR

Never called.

SBAR(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SBAR

Internal - constructor used by generator

SBAR(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SBAR

SBAR(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SBAR

SBAR_Type - Class in org.apache.ctakes.typesystem.type.syntax

A subordinate clause Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.SBAR Updated by JCasGen Tue Apr 09 12:44:03 EDT 2013

SBAR_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SBAR_Type

initialize variables to correspond with Cas Type and Features

SCOPE_ORDER_PARAM - Static variable in class org.apache.ctakes.necontexts.ContextAnnotator

"ScopeOrder" is a required, multiple, string parameter that specifies the order that the scopes should be processed in.

scopes - Variable in class org.apache.ctakes.necontexts.ContextAnnotator

score(Span, Span) - Static method in class org.apache.ctakes.coreference.eval.helpers.Span

search(String) - Method in class org.apache.ctakes.utils.wiki.WikiIndex

Search the index.

SearchResult - Class in org.apache.ctakes.utils.wiki

SearchResult(String, float) - Constructor for class org.apache.ctakes.utils.wiki.SearchResult

sectionRegexFileUriString - Variable in class org.mitre.medfacts.uima.ZoneAnnotator

sections - Variable in class org.apache.ctakes.core.ae.SectionSegmentAnnotator

SectionSegmentAnnotator - Class in org.apache.ctakes.core.ae

Creates a single segment annotation that spans the entire document.

SectionSegmentAnnotator() - Constructor for class org.apache.ctakes.core.ae.SectionSegmentAnnotator

Segment - Class in org.apache.ctakes.typesystem.type.textspan

A section of a clinical text, e.g., Diagnosis, Current Medications, Problem List.

Segment() - Constructor for class org.apache.ctakes.typesystem.type.textspan.Segment

Never called.

Segment(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Segment

Internal - constructor used by generator

Segment(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Segment

Segment(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Segment

Segment_Type - Class in org.apache.ctakes.typesystem.type.textspan

A section of a clinical text, e.g., Diagnosis, Current Medications, Problem List.

Segment_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Segment_Type

initialize variables to correspond with Cas Type and Features

SegmentMetaData - Class in org.apache.ctakes.preprocessor

MetaData about a segment.

SegmentMetaData() - Constructor for class org.apache.ctakes.preprocessor.SegmentMetaData

SELECT_A - Static variable in class org.apache.ctakes.core.ae.OverlapAnnotator.DeleteActionImpl

SELECT_A - Static variable in class org.apache.ctakes.core.ae.OverlapAnnotator.ModifyActionImpl

SELECT_A_B - Static variable in class org.apache.ctakes.core.ae.OverlapAnnotator.DeleteActionImpl

SELECT_B - Static variable in class org.apache.ctakes.core.ae.OverlapAnnotator.DeleteActionImpl

SELECT_B - Static variable in class org.apache.ctakes.core.ae.OverlapAnnotator.ModifyActionImpl

selectBaseToken(JCas) - Static method in class org.apache.ctakes.coreference.util.AnnotationSelector

selectDemonAndRelative(JCas) - Static method in class org.apache.ctakes.coreference.util.AnnotationSelector

selectedFeatureNames - Variable in class org.apache.ctakes.temporal.ae.feature.selection.FeatureSelection

selectExact(JCas, Class<T>) - Static method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase

selectNE(JCas) - Static method in class org.apache.ctakes.coreference.util.AnnotationSelector

selectPronoun(JCas, HashSet<String>, HashSet<String>, HashSet<String>, Logger) - Static method in class org.apache.ctakes.coreference.util.AnnotationSelector

selectSentence(JCas) - Static method in class org.apache.ctakes.coreference.util.AnnotationSelector

selFeats - Static variable in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator

SemanticArgument - Class in org.apache.ctakes.typesystem.type.textsem

SemanticArguments are used for predicate-argument structures (SemanticRoleRelations).

SemanticArgument() - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticArgument

Never called.

SemanticArgument(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticArgument

Internal - constructor used by generator

SemanticArgument(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticArgument

SemanticArgument(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticArgument

SemanticArgument_Type - Class in org.apache.ctakes.typesystem.type.textsem

SemanticArguments are used for predicate-argument structures (SemanticRoleRelations).

SemanticArgument_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type

initialize variables to correspond with Cas Type and Features

SemanticRoleRelation - Class in org.apache.ctakes.typesystem.type.textsem

Predicate-argument structure used for semantic role labeling output.

SemanticRoleRelation() - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation

Never called.

SemanticRoleRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation

Internal - constructor used by generator

SemanticRoleRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation

SemanticRoleRelation_Type - Class in org.apache.ctakes.typesystem.type.textsem

Predicate-argument structure used for semantic role labeling output.

SemanticRoleRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type

initialize variables to correspond with Cas Type and Features

sentDetect(String) - Method in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes

Detect sentences in a String.

SENTDIST - Static variable in class org.apache.ctakes.coreference.util.CorefConsts

Sentence - Class in org.apache.ctakes.typesystem.type.textspan

Sentences may or may not be fully-formed and grammatical.

Sentence() - Constructor for class org.apache.ctakes.typesystem.type.textspan.Sentence

Never called.

Sentence(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Sentence

Internal - constructor used by generator

Sentence(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Sentence

Sentence(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Sentence

SENTENCE_DETECTOR_PATH - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors

Sentence_Type - Class in org.apache.ctakes.typesystem.type.textspan

Sentences may or may not be fully-formed and grammatical.

Sentence_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Sentence_Type

initialize variables to correspond with Cas Type and Features

SentenceAdjuster - Class in org.apache.ctakes.smokingstatus.ae

UIMA annotator that uses some patterns and some rules about those patterns to adjust certain annotations.

SentenceAdjuster() - Constructor for class org.apache.ctakes.smokingstatus.ae.SentenceAdjuster

sentenceCount - Variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator

SentenceDetector - Class in org.apache.ctakes.core.ae

Wraps the OpenNLP sentence detector in a UIMA annotator

SentenceDetector() - Constructor for class org.apache.ctakes.core.ae.SentenceDetector

SentenceDetectorCtakes - Class in org.apache.ctakes.core.sentence

A sentence detector for splitting up raw text into sentences.

SentenceDetectorCtakes(MaxentModel, SDContextGenerator, EndOfSentenceScanner) - Constructor for class org.apache.ctakes.core.sentence.SentenceDetectorCtakes

Initializes the current instance.

SentenceSpan - Class in org.apache.ctakes.core.sentence

A span of text and its offsets within some larger text

SentenceSpan(int, int, String) - Constructor for class org.apache.ctakes.core.sentence.SentenceSpan

sentPosDetect(String) - Method in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes

Detect the position of the first words of sentences in a String.

SESentence - Class in org.apache.ctakes.sideeffect.type

Updated by JCasGen Tue Apr 09 12:35:26 EDT 2013 XML source: trunk/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/types/TypeSystem.xml

SESentence() - Constructor for class org.apache.ctakes.sideeffect.type.SESentence

Never called.

SESentence(int, TOP_Type) - Constructor for class org.apache.ctakes.sideeffect.type.SESentence

Internal - constructor used by generator

SESentence(JCas) - Constructor for class org.apache.ctakes.sideeffect.type.SESentence

SESentence(JCas, int, int) - Constructor for class org.apache.ctakes.sideeffect.type.SESentence

SESentence_Type - Class in org.apache.ctakes.sideeffect.type

Updated by JCasGen Tue Apr 09 12:35:26 EDT 2013

SESentence_Type(JCas, Type) - Constructor for class org.apache.ctakes.sideeffect.type.SESentence_Type

initialize variables to correspond with Cas Type and Features

SESentenceClassifierAnnotator - Class in org.apache.ctakes.sideeffect.ae

Classify side effect sentences and add them to SESentence

SESentenceClassifierAnnotator() - Constructor for class org.apache.ctakes.sideeffect.ae.SESentenceClassifierAnnotator

SESentenceFeatureAnnotator - Class in org.apache.ctakes.sideeffect.ae

Extract SE sentence (from PSESentence) features and add them to PSESentenceFeature.

SESentenceFeatureAnnotator() - Constructor for class org.apache.ctakes.sideeffect.ae.SESentenceFeatureAnnotator

setAbnormalInterpretation(DegreeOf) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab

setter for abnormalInterpretation - sets

setAbnormalInterpretation(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type

setAbnormalInterpretation(DegreeOfTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention

setter for abnormalInterpretation - sets

setAbnormalInterpretation(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention_Type

setAlleviatingFactor(ElementRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder

setter for alleviatingFactor - sets

setAlleviatingFactor(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type

setAlleviatingFactor(ElementRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom

setter for alleviatingFactor - sets

setAlleviatingFactor(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type

setAlleviatingFactor(ManagesTreatsTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention

setter for alleviatingFactor - sets

setAlleviatingFactor(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type

setAlleviatingFactor(ManagesTreatsTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention

setter for alleviatingFactor - sets

setAlleviatingFactor(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type

setAnaphor(Markable) - Method in class org.apache.ctakes.coreference.type.MarkablePair

setter for anaphor - sets

setAnaphor(int, int) - Method in class org.apache.ctakes.coreference.type.MarkablePair_Type

setAnaphor(Markable) - Method in class org.apache.ctakes.coreference.type.MarkablePairSet

setter for anaphor - sets

setAnaphor(int, int) - Method in class org.apache.ctakes.coreference.type.MarkablePairSet_Type

setAnaphoric_prob(double) - Method in class org.apache.ctakes.coreference.type.Markable

setter for anaphoric_prob - sets

setAnaphoric_prob(int, double) - Method in class org.apache.ctakes.coreference.type.Markable_Type

setAntecedent(Markable) - Method in class org.apache.ctakes.coreference.type.MarkablePair

setter for antecedent - sets Proposed antecedent

setAntecedent(int, int) - Method in class org.apache.ctakes.coreference.type.MarkablePair_Type

setAntecedentList(FSList) - Method in class org.apache.ctakes.coreference.type.MarkablePairSet

setter for antecedentList - sets

setAntecedentList(int, int) - Method in class org.apache.ctakes.coreference.type.MarkablePairSet_Type

setArg1(Element) - Method in class org.apache.ctakes.typesystem.type.relation.AttributeRelation

setter for arg1 - sets

setArg1(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.AttributeRelation_Type

setArg1(RelationArgument) - Method in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation

setter for arg1 - sets

setArg1(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation_Type

setArg1(Element) - Method in class org.apache.ctakes.typesystem.type.relation.ElementRelation

setter for arg1 - sets

setArg1(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.ElementRelation_Type

setArg2(Attribute) - Method in class org.apache.ctakes.typesystem.type.relation.AttributeRelation

setter for arg2 - sets

setArg2(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.AttributeRelation_Type

setArg2(RelationArgument) - Method in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation

setter for arg2 - sets

setArg2(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation_Type

setArg2(Element) - Method in class org.apache.ctakes.typesystem.type.relation.ElementRelation

setter for arg2 - sets

setArg2(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.ElementRelation_Type

setArgument(Annotation) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument

setter for argument - sets

setArgument(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument_Type

setArgument(SemanticArgument) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation

setter for argument - sets

setArgument(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type

setAspect(String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties

setter for aspect - sets

setAspect(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type

setAssertionType(String) - Method in class org.apache.ctakes.assertion.medfacts.types.Assertion

setter for assertionType - sets assertion type -- one of present, absent, possible, conditional, hypothetical, or assocated_with_someone_else

setAssertionType(int, String) - Method in class org.apache.ctakes.assertion.medfacts.types.Assertion_Type

setAssociatedConcept(Concept) - Method in class org.apache.ctakes.assertion.medfacts.types.Assertion

setter for associatedConcept - sets

setAssociatedConcept(int, int) - Method in class org.apache.ctakes.assertion.medfacts.types.Assertion_Type

setAssociatedSignSymptom(ManifestationOf) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder

setter for associatedSignSymptom - sets

setAssociatedSignSymptom(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type

setAssociatedSignSymptom(ManifestationOfTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention

setter for associatedSignSymptom - sets

setAssociatedSignSymptom(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type

setAttribute(String) - Method in class org.apache.ctakes.typesystem.type.util.Pair

setter for attribute - sets

setAttribute(int, String) - Method in class org.apache.ctakes.typesystem.type.util.Pair_Type

setAttributeName(String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.AttributeValue

setter for attributeName - sets

setAttributeName(int, String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.AttributeValue_Type

setAttributeStringValue(String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue

setter for attributeStringValue - sets

setAttributeStringValue(int, String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue_Type

setAuthorSpecialty(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData

setter for authorSpecialty - sets

setAuthorSpecialty(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type

setBirthDate(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics

setter for birthDate - sets

setBirthDate(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type

setBodyLaterality(BodyLaterality) - Method in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite

setter for bodyLaterality - sets

setBodyLaterality(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite_Type

setBodyLaterality(BodyLaterality) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder

setter for bodyLaterality - sets

setBodyLaterality(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type

setBodyLaterality(BodyLaterality) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure

setter for bodyLaterality - sets

setBodyLaterality(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type

setBodyLaterality(BodyLaterality) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom

setter for bodyLaterality - sets

setBodyLaterality(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type

setBodyLaterality(BodyLateralityModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention

setter for bodyLaterality - sets

setBodyLaterality(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention_Type

setBodyLaterality(BodyLateralityModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention

setter for bodyLaterality - sets

setBodyLaterality(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type

setBodyLaterality(BodyLateralityModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention

setter for bodyLaterality - sets

setBodyLaterality(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type

setBodyLaterality(BodyLateralityModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention

setter for bodyLaterality - sets

setBodyLaterality(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type

setBodyLocation(LocationOf) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder

setter for bodyLocation - sets

setBodyLocation(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type

setBodyLocation(LocationOf) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure

setter for bodyLocation - sets

setBodyLocation(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type

setBodyLocation(LocationOf) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom

setter for bodyLocation - sets

setBodyLocation(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type

setBodyLocation(LocationOfTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention

setter for bodyLocation - sets

setBodyLocation(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type

setBodyLocation(LocationOfTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention

setter for bodyLocation - sets

setBodyLocation(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type

setBodyLocation(LocationOfTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention

setter for bodyLocation - sets

setBodyLocation(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type

setBodySide(BodySide) - Method in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite

setter for bodySide - sets

setBodySide(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite_Type

setBodySide(BodySide) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder

setter for bodySide - sets

setBodySide(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type

setBodySide(BodySide) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure

setter for bodySide - sets

setBodySide(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type

setBodySide(BodySide) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom

setter for bodySide - sets

setBodySide(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type

setBodySide(BodySideModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention

setter for bodySide - sets

setBodySide(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention_Type

setBodySide(BodySideModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention

setter for bodySide - sets

setBodySide(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type

setBodySide(BodySideModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention

setter for bodySide - sets

setBodySide(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type

setBodySide(BodySideModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention

setter for bodySide - sets

setBodySide(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type

setCanonicalForm(String) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken

setter for canonicalForm - sets

setCanonicalForm(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken_Type

setCapitalization(int) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken

setter for capitalization - sets

setCapitalization(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken_Type

setCaps(byte) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token

Sets the caps state of the token.

setCategory(String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties

setter for category - sets Type of Event.

setCategory(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type

setCategory(String) - Method in class org.apache.ctakes.typesystem.type.relation.Relation

setter for category - sets

setCategory(int, String) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type

setCategory(String) - Method in class org.apache.ctakes.typesystem.type.textsem.Modifier

setter for category - sets

setCategory(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.Modifier_Type

setChangeStatus(String) - Method in class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation

setter for changeStatus - sets Indicates the drug change status of 'stop', 'start', 'increase', 'decrease', or 'noChange'.

setChangeStatus(int, String) - Method in class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation_Type

setChangeStatusBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for changeStatusBegin - sets

setChangeStatusBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setChangeStatusEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for changeStatusEnd - sets

setChangeStatusEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setChildren(FSArray) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode

setter for children - sets

setChildren(int, TreebankNode) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode

indexed setter for children - sets an indexed value -

setChildren(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type

setChildren(int, int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type

setChunkType(String) - Method in class org.apache.ctakes.typesystem.type.syntax.Chunk

setter for chunkType - sets

setChunkType(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.Chunk_Type

setClassification(String) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence

setter for classification - sets Smoking status classification for the given sentence.

setClassification(int, String) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type

setClassification(String) - Method in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification

setter for classification - sets represents the document level classification that RecordResolutionAnnotator assigns

setClassification(int, String) - Method in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification_Type

setClassLabel(IdentifiedAnnotation, Instance<String>) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine

setClassLabel(IdentifiedAnnotation, Instance<String>) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.ConditionalCleartkAnalysisEngine

setClassLabel(IdentifiedAnnotation, Instance<String>) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.GenericCleartkAnalysisEngine

setClassLabel(IdentifiedAnnotation, Instance<String>) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.HistoryCleartkAnalysisEngine

setClassLabel(IdentifiedAnnotation, Instance<String>) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.PolarityCleartkAnalysisEngine

setClassLabel(IdentifiedAnnotation, Instance<String>) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.SubjectCleartkAnalysisEngine

setClassLabel(IdentifiedAnnotation, Instance<String>) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.UncertaintyCleartkAnalysisEngine

setCode(String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept

setter for code - sets

setCode(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type

setCodingScheme(String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept

setter for codingScheme - sets

setCodingScheme(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type

setCommonNode(ConllDependencyNode) - Method in class org.apache.ctakes.dependency.parser.util.DependencyPath

setConceptText(String) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept

setter for conceptText - sets

setConceptText(int, String) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept_Type

setConceptType(String) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept

setter for conceptType - sets the concept type -- one of problem, treatment, or test

setConceptType(int, String) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept_Type

setConditional(boolean) - Method in class org.apache.ctakes.typesystem.type.refsem.Element

setter for conditional - sets

setConditional(int, boolean) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type

setConditional(boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation

setter for conditional - sets

setConditional(int, boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type

setConfidence(float) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for confidence - sets The confidence of the annotation.

setConfidence(int, float) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setConfidence(double) - Method in class org.apache.ctakes.typesystem.type.refsem.Element

setter for confidence - sets

setConfidence(int, double) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type

setConfidence(double) - Method in class org.apache.ctakes.typesystem.type.relation.Relation

setter for confidence - sets

setConfidence(int, double) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type

setConfidence(float) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation

setter for confidence - sets The confidence of the annotation.

setConfidence(int, float) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type

setConfidenceScoreElement(double, int, int) - Method in class org.apache.ctakes.drugner.DrugMention

setConfidenceScoreElement(double, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel

setContent(String) - Method in class org.apache.ctakes.core.util.DocumentSection

setContent(Annotation) - Method in class org.apache.ctakes.coreference.type.Markable

setter for content - sets The markable instance, i.e., a Named Entity, pronoun Token, etc.

setContent(int, int) - Method in class org.apache.ctakes.coreference.type.Markable_Type

setContextualAspect(String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties

setter for contextualAspect - sets

setContextualAspect(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type

setContextualModality(String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties

setter for contextualModality - sets

setContextualModality(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type

setContractionTokenLen(int) - Method in class org.apache.ctakes.core.nlp.tokenizer.ContractionResult

setCourse(Course) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder

setter for course - sets

setCourse(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type

setCourse(Course) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom

setter for course - sets

setCourse(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type

setCourse(DegreeOfTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention

setter for course - sets

setCourse(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type

setCourse(DegreeOfTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention

setter for course - sets

setCourse(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type

setCpostag(String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode

setter for cpostag - sets

setCpostag(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type

setCuePhrase(String) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation

setter for cuePhrase - sets cue phrase itself (from lookup list)

setCuePhrase(int, String) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type

setCuePhraseAssertionFamily(String) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation

setter for cuePhraseAssertionFamily - sets which assertion family this cue phrase belongs to (negation, uncertainty, or conditional)

setCuePhraseAssertionFamily(int, String) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type

setCuePhraseCategory(String) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation

setter for cuePhraseCategory - sets

setCuePhraseCategory(int, String) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type

setCuePhraseFirstWord(String) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation

setter for cuePhraseFirstWord - sets first word of cue phrase

setCuePhraseFirstWord(int, String) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type

setCui(String) - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept

setter for cui - sets

setCui(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept_Type

setDate(Date) - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention

setter for date - sets

setDate(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention_Type

setDateValue(String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue

setter for dateValue - sets

setDateValue(int, String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue_Type

setDay(String) - Method in class org.apache.ctakes.typesystem.type.refsem.Date

setter for day - sets

setDay(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.Date_Type

setDeathDate(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics

setter for deathDate - sets

setDeathDate(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type

setDegree(String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties

setter for degree - sets

setDegree(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type

setDeltaFlag(LabDeltaFlag) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab

setter for deltaFlag - sets

setDeltaFlag(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type

setDeltaFlag(LabDeltaFlagModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention

setter for deltaFlag - sets

setDeltaFlag(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention_Type

setDemographics(Demographics) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata

setter for demographics - sets

setDemographics(int, int) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type

setDeprel(String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode

setter for deprel - sets

setDeprel(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type

setDiscoveryTechnique(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element

setter for discoveryTechnique - sets

setDiscoveryTechnique(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type

setDiscoveryTechnique(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation

setter for discoveryTechnique - sets

setDiscoveryTechnique(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type

setDiscoveryTechnique(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation

setter for discoveryTechnique - sets

setDiscoveryTechnique(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type

setDocTimeRel(String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties

setter for docTimeRel - sets

setDocTimeRel(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type

setDocumentID(String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID

setter for documentID - sets

setDocumentID(int, String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID_Type

setDocumentID(String) - Method in class org.apache.ctakes.typesystem.type.structured.DocumentID

setter for documentID - sets

setDocumentID(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.DocumentID_Type

setDocumentLocator(Locator) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasProcessor

setDocumentStandard(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData

setter for documentStandard - sets

setDocumentStandard(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type

setDosage(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for dosage - sets Dosage refers to how many of each drug the patient is taking.

setDosage(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setDosageBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for dosageBegin - sets

setDosageBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setDosageElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention

setDosageElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel

setDosageEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for dosageEnd - sets

setDosageEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setDrug(IdentifiedAnnotation) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation

setter for drug - sets

setDrug(int, int) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation_Type

setDrugChangeStatus(String) - Method in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken

setDrugChangeStatus(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for drugChangeStatus - sets Status refers to the whether the medication is currently being taken or not.

setDrugChangeStatus(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setDrugChangeStatusElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention

setDrugChangeStatusElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel

setDuration(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for duration - sets Duration refers to for how long the patient is expected to take the drug.

setDuration(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setDuration(TemporalRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder

setter for duration - sets

setDuration(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type

setDuration(TemporalRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure

setter for duration - sets

setDuration(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type

setDuration(TemporalRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom

setter for duration - sets

setDuration(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type

setDuration(TemporalTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention

setter for duration - sets

setDuration(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type

setDuration(TemporalTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention

setter for duration - sets

setDuration(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type

setDuration(TemporalTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention

setter for duration - sets

setDuration(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type

setDurationBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for durationBegin - sets

setDurationBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setDurationElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention

setDurationElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel

setDurationEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for durationEnd - sets

setDurationEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setEnd(int) - Method in class org.apache.ctakes.core.sentence.SentenceSpan

Set offset of end of this span within the larger text

setEndDate(Date) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication

setter for endDate - sets

setEndDate(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type

setEndDate(Date) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention

setter for endDate - sets

setEndDate(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type

setEndDate(TimeMention) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention

setter for endDate - sets

setEndDate(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type

setEndDateElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention

setEndDateElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel

setEndLine(int) - Method in class org.apache.ctakes.core.util.DocumentSection

setEndOffset(int) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token

Sets the end offset.

setEndTime(Time) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder

setter for endTime - sets

setEndTime(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type

setEndTime(Time) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure

setter for endTime - sets

setEndTime(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type

setEndTime(Time) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom

setter for endTime - sets

setEndTime(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type

setEndTime(TimeMention) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention

setter for endTime - sets

setEndTime(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type

setEndTime(TimeMention) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention

setter for endTime - sets

setEndTime(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type

setEndTime(TimeMention) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention

setter for endTime - sets

setEndTime(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type

setEntity(Entity) - Method in class org.apache.ctakes.typesystem.type.textsem.EntityMention

setter for entity - sets

setEntity(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.EntityMention_Type

setEvent(Event) - Method in class org.apache.ctakes.typesystem.type.textsem.EventMention

setter for event - sets

setEvent(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.EventMention_Type

setExacerbatingFactor(ElementRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder

setter for exacerbatingFactor - sets

setExacerbatingFactor(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type

setExacerbatingFactor(ElementRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom

setter for exacerbatingFactor - sets

setExacerbatingFactor(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type

setExacerbatingFactor(ComplicatesDisruptsTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention

setter for exacerbatingFactor - sets

setExacerbatingFactor(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type

setExacerbatingFactor(ComplicatesDisruptsTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention

setter for exacerbatingFactor - sets

setExacerbatingFactor(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type

setExternalId(int) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept

setter for externalId - sets

setExternalId(int, int) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept_Type

setFeats(String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode

setter for feats - sets

setFeats(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type

setFeature(TOP) - Method in class org.apache.ctakes.coreference.type.BooleanLabeledFS

setter for feature - sets

setFeature(int, int) - Method in class org.apache.ctakes.coreference.type.BooleanLabeledFS_Type

setFeatures(StringArray) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature

setter for features - sets

setFeatures(int, String) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature

indexed setter for features - sets an indexed value -

setFeatures(int, int) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature_Type

setFeatures(int, int, String) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature_Type

setFirstName(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics

setter for firstName - sets

setFirstName(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type

setFirstNameSoundex(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics

setter for firstNameSoundex - sets

setFirstNameSoundex(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type

setFocusText(String) - Method in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation

setter for FocusText - sets

setFocusText(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation_Type

setForm(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for form - sets Form refers to the physical appearance of the drug.

setForm(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setForm(String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode

setter for form - sets

setForm(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type

setFormBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for formBegin - sets

setFormBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setFormElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention

setFormElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel

setFormEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for formEnd - sets

setFormEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setFormMethod(int) - Method in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken

setFrags(Collection<String>) - Method in class org.apache.ctakes.coreference.util.SvmVectorCreator

setFrameSet(String) - Method in class org.apache.ctakes.typesystem.type.textsem.Predicate

setter for frameSet - sets

setFrameSet(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.Predicate_Type

setFrequency(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for frequency - sets Frequency refers to how often the patient needs to take the drug.

setFrequency(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setFrequencyBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for frequencyBegin - sets

setFrequencyBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setFrequencyElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention

setFrequencyElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel

setFrequencyEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for frequencyEnd - sets

setFrequencyEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setFrequencyUnit(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for frequencyUnit - sets

setFrequencyUnit(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setFrequencyUnitElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention

setFrequencyUnitElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel

setFuBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for fuBegin - sets

setFuBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setFuEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for fuEnd - sets

setFuEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setGender(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics

setter for gender - sets

setGender(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type

setGeneric(boolean) - Method in class org.apache.ctakes.typesystem.type.refsem.Element

setter for generic - sets

setGeneric(int, boolean) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type

setGeneric(boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation

setter for generic - sets

setGeneric(int, boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type

setHead(ConllDependencyNode) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode

setter for head - sets

setHead(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type

setHeadIndex(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode

setter for headIndex - sets The head index tracks the index into the word tokens which is the syntactic head of a phrase.

setHeadIndex(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type

setHistoryOf(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element

setter for historyOf - sets

setHistoryOf(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type

setHistoryOf(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation

setter for historyOf - sets

setHistoryOf(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type

setHitDictionaryValue(String) - Method in class org.apache.ctakes.padtermspotter.type.PADLocation

setter for hitDictionaryValue - sets Value from the Dictionary that was successfully looked up

setHitDictionaryValue(int, String) - Method in class org.apache.ctakes.padtermspotter.type.PADLocation_Type

setHitDictionaryValue(String) - Method in class org.apache.ctakes.padtermspotter.type.PADTerm

setter for hitDictionaryValue - sets Value from the Dictionary that was successfully looked up

setHitDictionaryValue(int, String) - Method in class org.apache.ctakes.padtermspotter.type.PADTerm_Type

setId(int) - Method in class org.apache.ctakes.coreference.type.Markable

setter for id - sets

setId(int, int) - Method in class org.apache.ctakes.coreference.type.Markable_Type

setId(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element

setter for id - sets

setId(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type

setId(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation

setter for id - sets

setId(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type

setId(int) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument

setter for id - sets

setId(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument_Type

setId(int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode

setter for id - sets The token's position in the sentence.

setId(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type

setId(int) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation

setter for id - sets

setId(int, int) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type

setId(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation

setter for id - sets

setId(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type

setId(String) - Method in class org.apache.ctakes.typesystem.type.textspan.List

setter for id - sets

setId(int, String) - Method in class org.apache.ctakes.typesystem.type.textspan.List_Type

setId(String) - Method in class org.apache.ctakes.typesystem.type.textspan.Segment

setter for id - sets

setId(int, String) - Method in class org.apache.ctakes.typesystem.type.textspan.Segment_Type

setIndex(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode

setter for index - sets The index of this node in the top node's list of terminals.

setIndex(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode_Type

setIndicated(boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.ConditionalModifier

setter for indicated - sets

setIndicated(int, boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.ConditionalModifier_Type

setIndicated(boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.GenericModifier

setter for indicated - sets

setIndicated(int, boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.GenericModifier_Type

setIndicated(boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier

setter for indicated - sets

setIndicated(int, boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier_Type

setIndicated(boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier

setter for indicated - sets

setIndicated(int, boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier_Type

setIndicated(boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier

setter for indicated - sets

setIndicated(int, boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier_Type

setIndicated(boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.PolarityModifier

setter for indicated - sets

setIndicated(int, boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.PolarityModifier_Type

setIndicated(boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier

setter for indicated - sets

setIndicated(int, boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier_Type

setInputDirectory(File) - Method in class org.mitre.medfacts.uima.RunZoner

setInputFile(String) - Method in class org.apache.ctakes.smokingstatus.patientLevel.PatientLevelSmokingStatus

setInputFiles(List<File>) - Method in class org.mitre.medfacts.uima.RunZoner

setIntakeMethod(String) - Method in class org.apache.ctakes.drugner.type.RouteAnnotation

setter for intakeMethod - sets Means by which the drug was taken.

setIntakeMethod(int, String) - Method in class org.apache.ctakes.drugner.type.RouteAnnotation_Type

setIsInteger(boolean) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token

setIsStandAlone(int) - Method in class org.apache.ctakes.padtermspotter.type.PADLocation

setter for isStandAlone - sets Identifies weather this term needs another dictionary hit to be considered as a valid hit.

setIsStandAlone(int, int) - Method in class org.apache.ctakes.padtermspotter.type.PADLocation_Type

setIsStandAlone(int) - Method in class org.apache.ctakes.padtermspotter.type.PADTerm

setter for isStandAlone - sets Identifies weather this term needs another dictionary hit to be considered as a valid hit.

setIsStandAlone(int, int) - Method in class org.apache.ctakes.padtermspotter.type.PADTerm_Type

setItems(FSList) - Method in class org.apache.ctakes.typesystem.type.textspan.List

setter for items - sets

setItems(int, int) - Method in class org.apache.ctakes.typesystem.type.textspan.List_Type

setJcas(JCas) - Method in class org.apache.ctakes.assertion.medfacts.CasIndexer

setJcas(JCas) - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.ConstraintConstructor

setJcas(JCas) - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.SingleDocumentProcessorCtakes

setKey(String) - Method in class org.apache.ctakes.typesystem.type.syntax.Lemma

setter for key - sets

setKey(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.Lemma_Type

setLabel(String) - Method in class org.apache.ctakes.assertion.zoner.types.Heading

setter for label - sets

setLabel(int, String) - Method in class org.apache.ctakes.assertion.zoner.types.Heading_Type

setLabel(String) - Method in class org.apache.ctakes.assertion.zoner.types.Subzone

setter for label - sets

setLabel(int, String) - Method in class org.apache.ctakes.assertion.zoner.types.Subzone_Type

setLabel(String) - Method in class org.apache.ctakes.assertion.zoner.types.Zone

setter for label - sets

setLabel(int, String) - Method in class org.apache.ctakes.assertion.zoner.types.Zone_Type

setLabel(boolean) - Method in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree

setter for label - sets

setLabel(int, boolean) - Method in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree_Type

setLabel(boolean) - Method in class org.apache.ctakes.coreference.type.BooleanLabeledFS

setter for label - sets

setLabel(int, boolean) - Method in class org.apache.ctakes.coreference.type.BooleanLabeledFS_Type

setLabel(boolean) - Method in class org.apache.ctakes.coreference.type.MarkablePair

setter for label - sets Is this pair coreferent?

setLabel(int, boolean) - Method in class org.apache.ctakes.coreference.type.MarkablePair_Type

setLabel(String) - Method in class org.apache.ctakes.typesystem.type.structured.DocumentClassification

setter for label - sets

setLabel(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.DocumentClassification_Type

setLabel(String) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument

setter for label - sets

setLabel(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type

setLabValue(LabValue) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab

setter for labValue - sets

setLabValue(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type

setLabValue(ResultOfTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention

setter for labValue - sets

setLabValue(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention_Type

setLastName(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics

setter for lastName - sets

setLastName(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type

setLastNameSoundex(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics

setter for lastNameSoundex - sets

setLastNameSoundex(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type

setLeaf(boolean) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode

setter for leaf - sets

setLeaf(int, boolean) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type

setLemma(String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode

setter for lemma - sets

setLemma(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type

setLemmaEntries(FSList) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken

setter for lemmaEntries - sets

setLemmaEntries(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken_Type

setLogging(Level, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfAnnotationSpans_ImplBase

setMaxSizeList(int) - Static method in class org.apache.ctakes.dictionary.lookup.ae.LookupParseUtilities

Set the maximum list size to be returned from a lucene index

setMedicationAllergy(MedicationAllergyModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention

setter for medicationAllergy - sets

setMedicationAllergy(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type

setMedicationDosage(MedicationDosage) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication

setter for medicationDosage - sets

setMedicationDosage(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type

setMedicationDosage(MedicationDosage) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention

setter for medicationDosage - sets

setMedicationDosage(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type

setMedicationDosage(MedicationDosageModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention

setter for medicationDosage - sets

setMedicationDosage(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type

setMedicationDuration(MedicationDuration) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication

setter for medicationDuration - sets

setMedicationDuration(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type

setMedicationDuration(MedicationDuration) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention

setter for medicationDuration - sets

setMedicationDuration(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type

setMedicationDuration(MedicationDurationModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention

setter for medicationDuration - sets

setMedicationDuration(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type

setMedicationForm(MedicationForm) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication

setter for medicationForm - sets

setMedicationForm(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type

setMedicationForm(MedicationForm) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention

setter for medicationForm - sets

setMedicationForm(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type

setMedicationForm(MedicationFormModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention

setter for medicationForm - sets

setMedicationForm(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type

setMedicationFrequency(MedicationFrequency) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication

setter for medicationFrequency - sets

setMedicationFrequency(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type

setMedicationFrequency(MedicationFrequency) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention

setter for medicationFrequency - sets

setMedicationFrequency(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type

setMedicationFrequency(MedicationFrequencyModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention

setter for medicationFrequency - sets

setMedicationFrequency(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type

setMedicationRoute(MedicationRoute) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication

setter for medicationRoute - sets

setMedicationRoute(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type

setMedicationRoute(MedicationRoute) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention

setter for medicationRoute - sets

setMedicationRoute(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type

setMedicationRoute(MedicationRouteModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention

setter for medicationRoute - sets

setMedicationRoute(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type

setMedicationStatusChange(MedicationStatusChange) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication

setter for medicationStatusChange - sets

setMedicationStatusChange(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type

setMedicationStatusChange(MedicationStatusChange) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention

setter for medicationStatusChange - sets

setMedicationStatusChange(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type

setMedicationStatusChange(MedicationStatusChangeModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention

setter for medicationStatusChange - sets

setMedicationStatusChange(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type

setMedicationStrength(MedicationStrength) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication

setter for medicationStrength - sets

setMedicationStrength(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type

setMedicationStrength(MedicationStrength) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention

setter for medicationStrength - sets

setMedicationStrength(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type

setMedicationStrength(MedicationStrengthModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention

setter for medicationStrength - sets

setMedicationStrength(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type

setMembers(FSList) - Method in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelation

setter for members - sets A super-type for relationships between multiple spans of text.

setMembers(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelation_Type

setMentions(FSArray) - Method in class org.apache.ctakes.typesystem.type.refsem.Element

setter for mentions - sets

setMentions(int, IdentifiedAnnotation) - Method in class org.apache.ctakes.typesystem.type.refsem.Element

indexed setter for mentions - sets an indexed value -

setMentions(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type

setMentions(int, int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type

setMethod(ProcedureMethod) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure

setter for method - sets

setMethod(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type

setMethod(ProcedureMethodModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention

setter for method - sets

setMethod(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type

setMiddleName(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics

setter for middleName - sets

setMiddleName(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type

setMonth(String) - Method in class org.apache.ctakes.typesystem.type.refsem.Date

setter for month - sets

setMonth(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.Date_Type

setNodeTags(StringArray) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode

setter for nodeTags - sets

setNodeTags(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode

indexed setter for nodeTags - sets an indexed value -

setNodeTags(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type

setNodeTags(int, int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type

setNodeType(String) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode

setter for nodeType - sets

setNodeType(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type

setNodeValue(String) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode

setter for nodeValue - sets

setNodeValue(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type

setNominalValue(String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue

setter for nominalValue - sets

setNominalValue(int, String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue_Type

setNormalizedForm(String) - Method in class org.apache.ctakes.typesystem.type.refsem.Time

setter for normalizedForm - sets

setNormalizedForm(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.Time_Type

setNormalizedForm(String) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken

setter for normalizedForm - sets

setNormalizedForm(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken_Type

setNormalizedForm(Attribute) - Method in class org.apache.ctakes.typesystem.type.textsem.Modifier

setter for normalizedForm - sets

setNormalizedForm(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.Modifier_Type

setNoteSubTypeCode(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData

setter for noteSubTypeCode - sets

setNoteSubTypeCode(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type

setNoteTypeCode(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData

setter for noteTypeCode - sets

setNoteTypeCode(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type

setNumber(String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabValue

setter for number - sets

setNumber(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabValue_Type

setNumber(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency

setter for number - sets

setNumber(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency_Type

setNumber(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength

setter for number - sets

setNumber(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength_Type

setNumericValue(String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NumericAttributeValue

setter for numericValue - sets

setNumericValue(int, String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NumericAttributeValue_Type

setNumPosition(byte) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token

Sets the position of a number inside a Token.

setNumPosition(int) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken

setter for numPosition - sets

setNumPosition(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken_Type

setNumType(int) - Method in class org.apache.ctakes.typesystem.type.syntax.NumToken

setter for numType - sets

setNumType(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.NumToken_Type

setObjects(ArrayList<?>) - Static method in class org.apache.ctakes.coreference.treekernel.training.RowFillerThread

setOid(String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept

setter for oid - sets

setOid(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type

setOntologyConcept(OntologyConcept) - Method in class org.apache.ctakes.typesystem.type.refsem.Element

setter for ontologyConcept - sets

setOntologyConcept(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type

setOntologyConceptArr(FSArray) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation

setter for ontologyConceptArr - sets

setOntologyConceptArr(int, OntologyConcept) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation

indexed setter for ontologyConceptArr - sets an indexed value -

setOntologyConceptArr(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type

setOntologyConceptArr(int, int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type

setOrdinalInterpretation(DegreeOf) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab

setter for ordinalInterpretation - sets

setOrdinalInterpretation(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type

setOrdinalInterpretation(DegreeOfTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention

setter for ordinalInterpretation - sets

setOrdinalInterpretation(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention_Type

setOriginalEntityExternalId(int) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept

setter for originalEntityExternalId - sets

setOriginalEntityExternalId(int, int) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept_Type

setOui(String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept

setter for oui - sets holds the rxnorm unique identifier for a given drug mention.

setOui(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type

setOutputDirectory(File) - Method in class org.mitre.medfacts.uima.RunZoner

setOutputFile(String) - Method in class org.apache.ctakes.smokingstatus.patientLevel.PatientLevelSmokingStatus

setP1(TOP) - Method in class org.apache.ctakes.coreference.type.Pair

setter for p1 - sets

setP1(int, int) - Method in class org.apache.ctakes.coreference.type.Pair_Type

setP2(TOP) - Method in class org.apache.ctakes.coreference.type.Pair

setter for p2 - sets

setP2(int, int) - Method in class org.apache.ctakes.coreference.type.Pair_Type

setPairs(FSArray) - Method in class org.apache.ctakes.typesystem.type.util.Pairs

setter for pairs - sets

setPairs(int, Pair) - Method in class org.apache.ctakes.typesystem.type.util.Pairs

indexed setter for pairs - sets an indexed value -

setPairs(int, int) - Method in class org.apache.ctakes.typesystem.type.util.Pairs_Type

setPairs(int, int, int) - Method in class org.apache.ctakes.typesystem.type.util.Pairs_Type

setParent(TreebankNode) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode

setter for parent - sets

setParent(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type

setParentSectionId(String) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation

setter for parentSectionId - sets The section in which the subsection was found.

setParentSectionId(int, String) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type

setParentSectionId(String) - Method in class org.apache.ctakes.padtermspotter.type.SubSection

setter for parentSectionId - sets

setParentSectionId(int, String) - Method in class org.apache.ctakes.padtermspotter.type.SubSection_Type

setParticipatesIn(FSList) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument

setter for participatesIn - sets

setParticipatesIn(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument_Type

setPartOfSpeech(String) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken

setter for partOfSpeech - sets

setPartOfSpeech(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken_Type

setPatientID(long) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata

setter for patientID - sets

setPatientID(int, long) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type

setPdeprel(String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode

setter for pdeprel - sets

setPdeprel(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type

setPeriod(float) - Method in class org.apache.ctakes.drugner.type.FrequencyUnitAnnotation

setter for period - sets The periodic unit used, e.g day, month, hour, etc.

setPeriod(int, float) - Method in class org.apache.ctakes.drugner.type.FrequencyUnitAnnotation_Type

setPermanence(String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties

setter for permanence - sets

setPermanence(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type

setPhead(ConllDependencyNode) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode

setter for phead - sets

setPhead(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type

setPolarity(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element

setter for polarity - sets

setPolarity(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type

setPolarity(int) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties

setter for polarity - sets

setPolarity(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type

setPolarity(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation

setter for polarity - sets

setPolarity(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type

setPolarity(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation

setter for polarity - sets

setPolarity(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type

setPostag(String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode

setter for postag - sets

setPostag(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type

setPosTag(String) - Method in class org.apache.ctakes.typesystem.type.syntax.Lemma

setter for posTag - sets

setPosTag(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.Lemma_Type

setPredicate(Predicate) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation

setter for predicate - sets

setPredicate(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type

setPrimaryAssociatedCodeElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention

setPrimaryAssociatedCodeElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel

setProcedureDevice(ProcedureDevice) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure

setter for procedureDevice - sets

setProcedureDevice(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type

setProcedureDevice(ProcedureDeviceModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention

setter for procedureDevice - sets

setProcedureDevice(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type

setProperties(EventProperties) - Method in class org.apache.ctakes.typesystem.type.refsem.Event

setter for properties - sets

setProperties(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Event_Type

setProviderID(LongArray) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata

setter for providerID - sets

setProviderID(int, long) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata

indexed setter for providerID - sets an indexed value -

setProviderID(int, int) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type

setProviderID(int, int, long) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type

setPseSen(PSESentence) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature

setter for pseSen - sets

setPseSen(int, int) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature_Type

setReason(FSArray) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for reason - sets

setReason(int, TOP) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

indexed setter for reason - sets an indexed value -

setReason(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setReason(int, int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setRecordID(String) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence

setter for recordID - sets ID of record that this sentence belongs to.

setRecordID(int, String) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type

setRecordID(String) - Method in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification

setter for recordID - sets Represents the document record id

setRecordID(int, String) - Method in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification_Type

setRecordTextBegin(int) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence

setter for recordTextBegin - sets Begin offset of the sentence relative to the entire record text.

setRecordTextBegin(int, int) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type

setRecordTextEnd(int) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence

setter for recordTextEnd - sets End offset of the sentence relative to the entire record text.

setRecordTextEnd(int, int) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type

setReferenceRangeNarrative(LabReferenceRange) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab

setter for referenceRangeNarrative - sets

setReferenceRangeNarrative(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type

setReferenceRangeNarrative(LabReferenceRangeModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention

setter for referenceRangeNarrative - sets

setReferenceRangeNarrative(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention_Type

setRelatedTokens(FSArray) - Method in class org.apache.ctakes.padtermspotter.type.PADLocation

setter for relatedTokens - sets identifies the token that this PADTerm spans

setRelatedTokens(int, TOP) - Method in class org.apache.ctakes.padtermspotter.type.PADLocation

indexed setter for relatedTokens - sets an indexed value - identifies the token that this PADTerm spans

setRelatedTokens(int, int) - Method in class org.apache.ctakes.padtermspotter.type.PADLocation_Type

setRelatedTokens(int, int, int) - Method in class org.apache.ctakes.padtermspotter.type.PADLocation_Type

setRelatedTokens(FSArray) - Method in class org.apache.ctakes.padtermspotter.type.PADTerm

setter for relatedTokens - sets identifies the token that this PADTerm spans

setRelatedTokens(int, TOP) - Method in class org.apache.ctakes.padtermspotter.type.PADTerm

indexed setter for relatedTokens - sets an indexed value - identifies the token that this PADTerm spans

setRelatedTokens(int, int) - Method in class org.apache.ctakes.padtermspotter.type.PADTerm_Type

setRelatedTokens(int, int, int) - Method in class org.apache.ctakes.padtermspotter.type.PADTerm_Type

setRelation(SemanticRoleRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument

setter for relation - sets

setRelation(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type

setRelations(FSList) - Method in class org.apache.ctakes.typesystem.type.textsem.Predicate

setter for relations - sets

setRelations(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.Predicate_Type

setRelativeTemporalContext(TemporalRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder

setter for relativeTemporalContext - sets

setRelativeTemporalContext(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type

setRelativeTemporalContext(TemporalRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication

setter for relativeTemporalContext - sets

setRelativeTemporalContext(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type

setRelativeTemporalContext(TemporalRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure

setter for relativeTemporalContext - sets

setRelativeTemporalContext(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type

setRelativeTemporalContext(TemporalRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom

setter for relativeTemporalContext - sets

setRelativeTemporalContext(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type

setRelativeTemporalContext(TemporalTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention

setter for relativeTemporalContext - sets

setRelativeTemporalContext(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type

setRelativeTemporalContext(TemporalTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention

setter for relativeTemporalContext - sets

setRelativeTemporalContext(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type

setRelativeTemporalContext(TemporalTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention

setter for relativeTemporalContext - sets

setRelativeTemporalContext(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type

setRelativeTemporalContext(TemporalTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention

setter for relativeTemporalContext - sets

setRelativeTemporalContext(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type

setRole(String) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument

setter for role - sets

setRole(int, String) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument_Type

setRoute(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for route - sets Medication route refers to the way that a drug is introduced into the body.

setRoute(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setRouteBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for routeBegin - sets

setRouteBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setRouteElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention

setRouteElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel

setRouteEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for routeEnd - sets

setRouteEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setRow(ArrayList<Double>, int) - Method in class org.apache.ctakes.coreference.treekernel.training.RowFillerThread

setScope(String) - Method in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation

setter for Scope - sets

setScope(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation_Type

setSecondaryAssociatedCodeElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention

setSecondaryAssociatedCodeElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel

setSectionName(String) - Method in class org.apache.ctakes.core.util.DocumentSection

setSegmentID(String) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation

setter for segmentID - sets

setSegmentID(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type

setSegmentId(String) - Method in class org.apache.ctakes.typesystem.type.textspan.Sentence

setter for segmentId - sets

setSegmentId(int, String) - Method in class org.apache.ctakes.typesystem.type.textspan.Sentence_Type

setSentence(SESentence) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation

setter for sentence - sets sentence containing side effect

setSentence(int, int) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation_Type

setSentenceID(String) - Method in class org.apache.ctakes.drugner.type.ChunkAnnotation

setter for sentenceID - sets

setSentenceID(int, String) - Method in class org.apache.ctakes.drugner.type.ChunkAnnotation_Type

setSentenceID(String) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation

setter for sentenceID - sets contains the sentence id of the sentence that contains the NE's text span

setSentenceID(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type

setSentenceNumber(int) - Method in class org.apache.ctakes.typesystem.type.textspan.Sentence

setter for sentenceNumber - sets

setSentenceNumber(int, int) - Method in class org.apache.ctakes.typesystem.type.textspan.Sentence_Type

setSeverity(String) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom

setter for severity - sets

setSeverity(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type

setSeverity(DegreeOfTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention

setter for severity - sets

setSeverity(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type

setSeverity(DegreeOfTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention

setter for severity - sets

setSeverity(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type

setSideEffect(IdentifiedAnnotation) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation

setter for sideEffect - sets side effect mention in NamedEntity

setSideEffect(int, int) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation_Type

setSourceApplication(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData

setter for sourceApplication - sets

setSourceApplication(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type

setSourceData(SourceData) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata

setter for sourceData - sets

setSourceData(int, int) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type

setSourceEncounterId(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData

setter for sourceEncounterId - sets

setSourceEncounterId(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type

setSourceInstanceId(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData

setter for sourceInstanceId - sets

setSourceInstanceId(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type

setSourceInstitution(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData

setter for sourceInstitution - sets

setSourceInstitution(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type

setSourceOriginalDate(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData

setter for sourceOriginalDate - sets

setSourceOriginalDate(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type

setSourceRevisionDate(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData

setter for sourceRevisionDate - sets

setSourceRevisionDate(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type

setSourceRevisionNbr(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData

setter for sourceRevisionNbr - sets

setSourceRevisionNbr(int, int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type

setStart(int) - Method in class org.apache.ctakes.core.sentence.SentenceSpan

Set offset of start of this span within the larger text

setStartDate(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for startDate - sets

setStartDate(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setStartDate(Date) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication

setter for startDate - sets

setStartDate(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type

setStartDate(Date) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention

setter for startDate - sets

setStartDate(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type

setStartDate(TimeMention) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention

setter for startDate - sets

setStartDate(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type

setStartDateElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention

setStartDateElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel

setStartLine(int) - Method in class org.apache.ctakes.core.util.DocumentSection

setStartOffset(int) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token

Sets the start offset.

setStartTime(Time) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder

setter for startTime - sets

setStartTime(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type

setStartTime(Time) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure

setter for startTime - sets

setStartTime(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type

setStartTime(Time) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom

setter for startTime - sets

setStartTime(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type

setStartTime(TimeMention) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention

setter for startTime - sets

setStartTime(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type

setStartTime(TimeMention) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention

setter for startTime - sets

setStartTime(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type

setStartTime(TimeMention) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention

setter for startTime - sets

setStartTime(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type

setStatus(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for status - sets

setStatus(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setStatus(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation

setter for status - sets Status of 'possible', 'history of', or 'family history of'.

setStatus(int, int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type

setStatus(int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection

setter for status - sets

setStatus(int, int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection_Type

setStopWordsList(HashSet<String>) - Method in class org.apache.ctakes.coreference.util.AttributeCalculator

setStrength(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for strength - sets

setStrength(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setStrengthBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for strengthBegin - sets

setStrengthBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setStrengthElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention

setStrengthElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel

setStrengthEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for strengthEnd - sets

setStrengthEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setStrengthUnit(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for strengthUnit - sets

setStrengthUnit(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setStrengthUnitElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention

setStrengthUnitElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel

setSuBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for suBegin - sets

setSuBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setSubject(String) - Method in class org.apache.ctakes.typesystem.type.refsem.Element

setter for subject - sets

setSubject(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type

setSubject(String) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation

setter for subject - sets

setSubject(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type

setSubSectionBodyBegin(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation

setter for subSectionBodyBegin - sets Sub-section body begin offset.

setSubSectionBodyBegin(int, int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type

setSubSectionBodyBegin(int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection

setter for subSectionBodyBegin - sets

setSubSectionBodyBegin(int, int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection_Type

setSubSectionBodyEnd(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation

setter for subSectionBodyEnd - sets Sub-section body end offset.

setSubSectionBodyEnd(int, int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type

setSubSectionBodyEnd(int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection

setter for subSectionBodyEnd - sets

setSubSectionBodyEnd(int, int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection_Type

setSubSectionHeaderBegin(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation

setter for subSectionHeaderBegin - sets Begin offset of subSection header

setSubSectionHeaderBegin(int, int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type

setSubSectionHeaderBegin(int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection

setter for subSectionHeaderBegin - sets

setSubSectionHeaderBegin(int, int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection_Type

setSubSectionHeaderEnd(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation

setter for subSectionHeaderEnd - sets Ending offset of subsection header

setSubSectionHeaderEnd(int, int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type

setSubSectionHeaderEnd(int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection

setter for subSectionHeaderEnd - sets

setSubSectionHeaderEnd(int, int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection_Type

setSuEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation

setter for suEnd - sets

setSuEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type

setSuggestion(String) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken

setter for suggestion - sets

setSuggestion(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken_Type

setTerminals(FSArray) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode

setter for terminals - sets Stores the terminal nodes of the parse tree.

setTerminals(int, TerminalTreebankNode) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode

indexed setter for terminals - sets an indexed value - Stores the terminal nodes of the parse tree.

setTerminals(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type

setTerminals(int, int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type

setText(String) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token

setText(String) - Method in class org.apache.ctakes.core.sentence.SentenceSpan

setText(String) - Method in class org.apache.ctakes.preprocessor.DocumentMetaData

setTime(Time) - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention

setter for time - sets

setTime(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention_Type

setTimeClass(String) - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention

setter for timeClass - sets DATE, DURATION, QUANTIFIER, PREPOSTEXP, etc.

setTimeClass(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention_Type

setTokenIndex(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode

setter for tokenIndex - sets The tokenIndex of a terminal is n, where the terminal is the nth token in a sentence.

setTokenIndex(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode_Type

setTokenNumber(int) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken

setter for tokenNumber - sets

setTokenNumber(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken_Type

setTree(String) - Method in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree

setter for tree - sets

setTree(int, String) - Method in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree_Type

setTreebankParse(String) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode

setter for treebankParse - sets A bracketed sentence string representing the parse tree.

setTreebankParse(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type

setTui(String) - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept

setter for tui - sets

setTui(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept_Type

setType(byte) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token

Sets the type of the token.

setType(String) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation

Sets the type name of this annotation.

setTypeID(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation

setter for typeID - sets The type of named entity (e.g.

setTypeID(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type

setUaLocation(PADLocation) - Method in class org.apache.ctakes.padtermspotter.type.PADHit

setter for uaLocation - sets

setUaLocation(int, int) - Method in class org.apache.ctakes.padtermspotter.type.PADHit_Type

setUaTerm(PADTerm) - Method in class org.apache.ctakes.padtermspotter.type.PADHit

setter for uaTerm - sets

setUaTerm(int, int) - Method in class org.apache.ctakes.padtermspotter.type.PADHit_Type

setUncertainty(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element

setter for uncertainty - sets

setUncertainty(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type

setUncertainty(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation

setter for uncertainty - sets

setUncertainty(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type

setUncertainty(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation

setter for uncertainty - sets

setUncertainty(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type

setUnit(String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabValue

setter for unit - sets

setUnit(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabValue_Type

setUnit(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency

setter for unit - sets The periodic unit used, e.g day, month, hour, etc.

setUnit(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency_Type

setUnit(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength

setter for unit - sets the unit of measurement

setUnit(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength_Type

setUp() - Method in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessorTest

setValue(String) - Method in class org.apache.ctakes.dictionary.lookup.filter.SetValuePostLookupFilterImpl

setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.BodyLaterality

setter for value - sets

setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.BodyLaterality_Type

setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.BodySide

setter for value - sets

setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.BodySide_Type

setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.Course

setter for value - sets

setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.Course_Type

setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag

setter for value - sets

setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag_Type

setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange

setter for value - sets

setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange_Type

setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDosage

setter for value - sets

setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDosage_Type

setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDuration

setter for value - sets

setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDuration_Type

setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationForm

setter for value - sets

setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationForm_Type

setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationRoute

setter for value - sets

setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationRoute_Type

setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange

setter for value - sets Indicates the change status of 'stop', 'start', 'increase', 'decrease', or 'noChange'.

setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange_Type

setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice

setter for value - sets

setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice_Type

setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod

setter for value - sets

setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod_Type

setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.Severity

setter for value - sets

setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.Severity_Type

setValue(String) - Method in class org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier

setter for value - sets

setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier_Type

setValue(String) - Method in class org.apache.ctakes.typesystem.type.textsem.SubjectModifier

setter for value - sets

setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.SubjectModifier_Type

setValue(String) - Method in class org.apache.ctakes.typesystem.type.util.Pair

setter for value - sets

setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.util.Pair_Type

SetValuePostLookupFilterImpl - Class in org.apache.ctakes.dictionary.lookup.filter

A filter that uses a value to filter against a MetaDataHit.

SetValuePostLookupFilterImpl(String, int, int, boolean) - Constructor for class org.apache.ctakes.dictionary.lookup.filter.SetValuePostLookupFilterImpl

setWordTokenLen(int) - Method in class org.apache.ctakes.core.nlp.tokenizer.ContractionResult

setYear(String) - Method in class org.apache.ctakes.typesystem.type.refsem.Date

setter for year - sets

setYear(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.Date_Type

SEUtil - Class in org.apache.ctakes.sideeffect.util

Utility methods used in the project

SEUtil() - Constructor for class org.apache.ctakes.sideeffect.util.SEUtil

Severity - Class in org.apache.ctakes.typesystem.type.refsem

An explicitly-mentioned indication of the seriousness of a condition.

Severity() - Constructor for class org.apache.ctakes.typesystem.type.refsem.Severity

Never called.

Severity(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Severity

Internal - constructor used by generator

Severity(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Severity

Severity_Type - Class in org.apache.ctakes.typesystem.type.refsem

An explicitly-mentioned indication of the seriousness of a condition.

Severity_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Severity_Type

initialize variables to correspond with Cas Type and Features

SeverityModifier - Class in org.apache.ctakes.typesystem.type.textsem

An explicitly-mentioned indication of the seriousness of a condition.

SeverityModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.SeverityModifier

Never called.

SeverityModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SeverityModifier

Internal - constructor used by generator

SeverityModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SeverityModifier

SeverityModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SeverityModifier

SeverityModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem

An explicitly-mentioned indication of the seriousness of a condition.

SeverityModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SeverityModifier_Type

initialize variables to correspond with Cas Type and Features

shallowCopy() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation

Clones this object, its attributes, and reference keys.

SHAMPOO - Static variable in class org.apache.ctakes.drugner.elements.FormElement

shareAllXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants

shareDevXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants

shareEntityMentionRole - Static variable in class org.apache.ctakes.relationextractor.cr.Constants

shareModifierRole - Static variable in class org.apache.ctakes.relationextractor.cr.Constants

shareTestXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants

shareTrainXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants

sharpAllXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants

SharpCorpusSplit - Class in org.apache.ctakes.assertion.pipelines

SharpCorpusSplit() - Constructor for class org.apache.ctakes.assertion.pipelines.SharpCorpusSplit

SharpCorpusSplit.Subcorpus - Enum in org.apache.ctakes.assertion.pipelines

sharpDevXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants

sharpEntityMentionRole - Static variable in class org.apache.ctakes.relationextractor.cr.Constants

SHARPKnowtatorXMLDefaults - Class in org.apache.ctakes.core.util

A helper class that centralizes methods to assign all the default values from the SHARP corpus annotation guidelines.

SHARPKnowtatorXMLDefaults() - Constructor for class org.apache.ctakes.core.util.SHARPKnowtatorXMLDefaults

SHARPKnowtatorXMLReader - Class in org.apache.ctakes.core.ae

SHARPKnowtatorXMLReader() - Constructor for class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader

sharpModifierRole - Static variable in class org.apache.ctakes.relationextractor.cr.Constants

sharpRelationsAll - Static variable in class org.apache.ctakes.relationextractor.data.Constants

sharpRelationsHighPriority - Static variable in class org.apache.ctakes.relationextractor.data.Constants

sharpRelationsLowPriority - Static variable in class org.apache.ctakes.relationextractor.data.Constants

sharpRelationsSelected - Static variable in class org.apache.ctakes.relationextractor.data.Constants

sharpTestXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants

sharpTrainXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants

shortType() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation

Returns a short description of this XcasAnnotation's type, specifically, the last segment as separated by dots.

SideEffectAnnotation - Class in org.apache.ctakes.sideeffect.type

Updated by JCasGen Tue Apr 09 12:35:26 EDT 2013 XML source: trunk/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/types/TypeSystem.xml

SideEffectAnnotation() - Constructor for class org.apache.ctakes.sideeffect.type.SideEffectAnnotation

Never called.

SideEffectAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.sideeffect.type.SideEffectAnnotation

Internal - constructor used by generator

SideEffectAnnotation(JCas) - Constructor for class org.apache.ctakes.sideeffect.type.SideEffectAnnotation

SideEffectAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.sideeffect.type.SideEffectAnnotation

SideEffectAnnotation_Type - Class in org.apache.ctakes.sideeffect.type

Updated by JCasGen Tue Apr 09 12:35:26 EDT 2013

SideEffectAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.sideeffect.type.SideEffectAnnotation_Type

initialize variables to correspond with Cas Type and Features

SideEffectAnnotator - Class in org.apache.ctakes.sideeffect.ae

Rule-based side effect extraction.

SideEffectAnnotator() - Constructor for class org.apache.ctakes.sideeffect.ae.SideEffectAnnotator

SideEffectCasConsumer - Class in org.apache.ctakes.sideeffect.cc

SideEffectCasConsumer() - Constructor for class org.apache.ctakes.sideeffect.cc.SideEffectCasConsumer

SideEffectSentenceCasConsumer - Class in org.apache.ctakes.sideeffect.cc

SideEffectSentenceCasConsumer() - Constructor for class org.apache.ctakes.sideeffect.cc.SideEffectSentenceCasConsumer

SignSymptom - Class in org.apache.ctakes.typesystem.type.refsem

This is an Event from the UMLS semantic group of Sign or Symtom.

SignSymptom() - Constructor for class org.apache.ctakes.typesystem.type.refsem.SignSymptom

Never called.

SignSymptom(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.SignSymptom

Internal - constructor used by generator

SignSymptom(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.SignSymptom

SignSymptom_Type - Class in org.apache.ctakes.typesystem.type.refsem

This is an Event from the UMLS semantic group of Sign or Symtom.

SignSymptom_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type

initialize variables to correspond with Cas Type and Features

SignSymptomMention - Class in org.apache.ctakes.typesystem.type.textsem

A text string that refers to a (SignSymptom) Event.

SignSymptomMention() - Constructor for class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention

Never called.

SignSymptomMention(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention

Internal - constructor used by generator

SignSymptomMention(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention

SignSymptomMention(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention

SignSymptomMention_Type - Class in org.apache.ctakes.typesystem.type.textsem

A text string that refers to a (SignSymptom) Event.

SignSymptomMention_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type

initialize variables to correspond with Cas Type and Features

sim1 - Variable in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator

sim2 - Variable in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator

SIMPLE_SEGMENTER_PATH - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors

SimpleSegmentAnnotator - Class in org.apache.ctakes.core.ae

Creates a single segment annotation that spans the entire document.

SimpleSegmentAnnotator() - Constructor for class org.apache.ctakes.core.ae.SimpleSegmentAnnotator

SimpleSegmentAnnotatorTests - Class in org.apache.ctakes.core.ae

SimpleSegmentAnnotatorTests() - Constructor for class org.apache.ctakes.core.ae.SimpleSegmentAnnotatorTests

SimpleSegmentWithTagsAnnotator - Class in org.apache.ctakes.core.ae

Creates a single segment annotation that spans the entire document.

SimpleSegmentWithTagsAnnotator() - Constructor for class org.apache.ctakes.core.ae.SimpleSegmentWithTagsAnnotator

SimpleTree - Class in org.apache.ctakes.utils.tree

SimpleTree(String) - Constructor for class org.apache.ctakes.utils.tree.SimpleTree

SimpleTree(String, SimpleTree) - Constructor for class org.apache.ctakes.utils.tree.SimpleTree

SingleDocumentProcessorCtakes - Class in org.apache.ctakes.assertion.medfacts.i2b2.api

SingleDocumentProcessorCtakes() - Constructor for class org.apache.ctakes.assertion.medfacts.i2b2.api.SingleDocumentProcessorCtakes

size() - Method in class org.apache.ctakes.coreference.eval.helpers.Span

size - Variable in class org.apache.ctakes.postagger.test.CpeTests.StatusCallbackListenerImpl

size - Variable in class org.apache.ctakes.regression.test.RegressionPipelineTest.StatusCallbackListenerImpl

size() - Method in class org.apache.ctakes.utils.struct.CounterTreeMap

SmokerNamedEntityAnnotation - Class in org.apache.ctakes.smokingstatus.type

Updated by JCasGen Tue Apr 09 12:43:45 EDT 2013 XML source: trunk/ctakes-smoking-status-res/src/main/resources/org/apache/ctakes/smokingstatus/types/TypeSystem.xml

SmokerNamedEntityAnnotation() - Constructor for class org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation

Never called.

SmokerNamedEntityAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation

Internal - constructor used by generator

SmokerNamedEntityAnnotation(JCas) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation

SmokerNamedEntityAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation

SmokerNamedEntityAnnotation_Type - Class in org.apache.ctakes.smokingstatus.type

Updated by JCasGen Tue Apr 09 12:43:45 EDT 2013

SmokerNamedEntityAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation_Type

initialize variables to correspond with Cas Type and Features

SmokerNamedEntityLookupConsumerImpl - Class in org.apache.ctakes.smokingstatus.lookup.ae

copied from edu.may.bmi.uima.lookup.ae.NamedEntityLookupConsumerImpl in the "Dictionary Lookup" project to use "SmokerNamedEntityAnnotation" instead of NamedEntityAnnotation

SmokerNamedEntityLookupConsumerImpl(UimaContext, Properties) - Constructor for class org.apache.ctakes.smokingstatus.lookup.ae.SmokerNamedEntityLookupConsumerImpl

SmokingDocumentClassification - Class in org.apache.ctakes.smokingstatus.type

Represents classification related to the document Updated by JCasGen Tue Apr 09 12:43:45 EDT 2013 XML source: trunk/ctakes-smoking-status-res/src/main/resources/org/apache/ctakes/smokingstatus/types/TypeSystem.xml

SmokingDocumentClassification() - Constructor for class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification

Never called.

SmokingDocumentClassification(int, TOP_Type) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification

Internal - constructor used by generator

SmokingDocumentClassification(JCas) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification

SmokingDocumentClassification(JCas, int, int) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification

SmokingDocumentClassification_Type - Class in org.apache.ctakes.smokingstatus.type

Represents classification related to the document Updated by JCasGen Tue Apr 09 12:43:45 EDT 2013

SmokingDocumentClassification_Type(JCas, Type) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification_Type

initialize variables to correspond with Cas Type and Features

smokingWords - Variable in class org.apache.ctakes.smokingstatus.ae.KuRuleBasedClassifierAnnotator

smoothingCount - Variable in class org.apache.ctakes.temporal.ae.feature.selection.MutualInformationFeatureSelection.MutualInformationStats

smoteNumOfNeighbors - Variable in class org.apache.ctakes.temporal.ae.EventAnnotator

SMOTEplus - Class in org.apache.ctakes.temporal.utils

A simple implementation of SMOTE algorithm.

SMOTEplus(int) - Constructor for class org.apache.ctakes.temporal.utils.SMOTEplus

SOAP - Static variable in class org.apache.ctakes.drugner.elements.FormElement

SOLUTION - Static variable in class org.apache.ctakes.drugner.elements.FormElement

sort(Markable, LinkedList<Markable>, JCas) - Static method in class org.apache.ctakes.coreference.util.HobbsTreeNavigator

SourceData - Class in org.apache.ctakes.typesystem.type.structured

Information about the caregiving setting for the clinical document.

SourceData() - Constructor for class org.apache.ctakes.typesystem.type.structured.SourceData

Never called.

SourceData(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.SourceData

Internal - constructor used by generator

SourceData(JCas) - Constructor for class org.apache.ctakes.typesystem.type.structured.SourceData

SourceData_Type - Class in org.apache.ctakes.typesystem.type.structured

Information about the caregiving setting for the clinical document.

SourceData_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.SourceData_Type

initialize variables to correspond with Cas Type and Features

Span - Class in org.apache.ctakes.assertion.cr

Represents span of a named entity

Span(int, int) - Constructor for class org.apache.ctakes.assertion.cr.Span

Span - Class in org.apache.ctakes.coreference.eval.helpers

Span() - Constructor for class org.apache.ctakes.coreference.eval.helpers.Span

Span(int[]) - Constructor for class org.apache.ctakes.coreference.eval.helpers.Span

Span(String) - Constructor for class org.apache.ctakes.coreference.eval.helpers.Span

span - Variable in class org.apache.ctakes.preprocessor.SegmentMetaData

Span - Class in org.apache.ctakes.relationextractor.knowtator

Represents span of a named entity

Span(int, int) - Constructor for class org.apache.ctakes.relationextractor.knowtator.Span

SpanAlignment - Class in org.apache.ctakes.coreference.eval.helpers

SpanAlignment(Span[], Span[]) - Constructor for class org.apache.ctakes.coreference.eval.helpers.SpanAlignment

spannedText - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation

The text spanned by this annnotation (null if not associated with a span of text).

SpanOffsetComparator - Class in org.apache.ctakes.coreference.eval.helpers

SpanOffsetComparator() - Constructor for class org.apache.ctakes.coreference.eval.helpers.SpanOffsetComparator

spans - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation

The character offsets of this annotation (empty if not associated with a span of text).

split(File) - Static method in class org.apache.ctakes.assertion.pipelines.SharpCorpusSplit

SPLIT - Static variable in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes

Constant indicates a sentence split.

split() - Method in class org.apache.ctakes.relationextractor.data.Splitter

splitAtLineBreaksAndTrim(String) - Method in class org.apache.ctakes.core.sentence.SentenceSpan

Trim any leading or trailing whitespace.

Splitter - Class in org.apache.ctakes.relationextractor.data

Randomly split a set of files in a directory into three sets: train, dev, and test.

Splitter(double, double) - Constructor for class org.apache.ctakes.relationextractor.data.Splitter

Specify percentages of the split.

Splitter(int, int, int) - Constructor for class org.apache.ctakes.relationextractor.data.Splitter

Specify the size of each set.

SPRAY - Static variable in class org.apache.ctakes.drugner.elements.FormElement

SRL_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors

srlabeler - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

srlModelFile - Variable in class org.apache.ctakes.dependency.parser.ae.util.TestClearNLPAnalysisEngines.Options

srlModelUri - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

srlPredUri - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

srlRoleUri - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

SRLUtility - Class in org.apache.ctakes.dependency.parser.util

SRLUtility() - Constructor for class org.apache.ctakes.dependency.parser.util.SRLUtility

STAND_ALONE - Static variable in class org.apache.ctakes.padtermspotter.impl.PADLocationConsumerImpl

STAND_ALONE - Static variable in class org.apache.ctakes.padtermspotter.impl.PADTermConsumerImpl

StanfordDependency - Class in org.apache.ctakes.typesystem.type.syntax

Stanford dependencies provide a representation of grammatical relations between words in a sentence.

StanfordDependency() - Constructor for class org.apache.ctakes.typesystem.type.syntax.StanfordDependency

Never called.

StanfordDependency(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.StanfordDependency

Internal - constructor used by generator

StanfordDependency(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.StanfordDependency

StanfordDependency_Type - Class in org.apache.ctakes.typesystem.type.syntax

Stanford dependencies provide a representation of grammatical relations between words in a sentence.

StanfordDependency_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.StanfordDependency_Type

initialize variables to correspond with Cas Type and Features

start - Variable in class org.apache.ctakes.assertion.cr.Span

START - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken

start - Variable in class org.apache.ctakes.preprocessor.IntegerRange

start - Variable in class org.apache.ctakes.relationextractor.knowtator.Span

START_STATUS - Static variable in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement

startDate - Variable in class org.apache.ctakes.drugner.DrugMention

If there is a specific date in the note associated with the drug mention, the specific date.

StartDateElement - Class in org.apache.ctakes.drugner.elements

StartDateElement() - Constructor for class org.apache.ctakes.drugner.elements.StartDateElement

StartDateElement(String, int, int) - Constructor for class org.apache.ctakes.drugner.elements.StartDateElement

startDocument() - Method in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

startElement(String, String, String, Attributes) - Method in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

startElement(String, String, String, Attributes) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasProcessor

startMatch(String, String) - Static method in class org.apache.ctakes.coreference.util.TextMatch

startOffset - Variable in class org.apache.ctakes.preprocessor.Annotation

startsWithWithoutBeingFollowedByLetter(String, String) - Static method in class org.apache.ctakes.core.nlp.tokenizer.TokenizerHelper

Stats - Class in org.apache.ctakes.relationextractor.data

Calculate relation frequencies in a data set that consists of XML files exported from Knowtator.

Stats() - Constructor for class org.apache.ctakes.relationextractor.data.Stats

stats - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.ParameterSettings

StatusAnnotatorTests - Class in org.apache.ctakes.necontexts

StatusAnnotatorTests() - Constructor for class org.apache.ctakes.necontexts.StatusAnnotatorTests

StatusContextAnalyzer - Class in org.apache.ctakes.necontexts.status

StatusContextAnalyzer() - Constructor for class org.apache.ctakes.necontexts.status.StatusContextAnalyzer

StatusContextHitConsumer - Class in org.apache.ctakes.necontexts.status

StatusContextHitConsumer() - Constructor for class org.apache.ctakes.necontexts.status.StatusContextHitConsumer

StatusIndicator - Class in org.apache.ctakes.core.fsm.output

StatusIndicator(int, int, int) - Constructor for class org.apache.ctakes.core.fsm.output.StatusIndicator

StatusIndicatorFSM - Class in org.apache.ctakes.core.fsm.machine

Uses one or more finite state machines to detect indications of
family history of
history of
possible/probable/likely

StatusIndicatorFSM() - Constructor for class org.apache.ctakes.core.fsm.machine.StatusIndicatorFSM

Constructor

StatusIndicatorFSM - Class in org.apache.ctakes.drugner.fsm.machines.util

Uses one or more finite state machines to detect ???

StatusIndicatorFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.util.StatusIndicatorFSM

Constructor

STOP - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken

STOP_STATUS - Static variable in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement

stopwords - Variable in class org.apache.ctakes.coreference.ae.MipacqMarkablePairGenerator

stopwords - Variable in class org.apache.ctakes.coreference.ae.MipacqSvmChainCreator

stopwords - Static variable in class org.apache.ctakes.coreference.util.AttributeCalculator

stopwords - Variable in class org.apache.ctakes.coreference.util.SvmVectorCreator

stopWords - Variable in class org.apache.ctakes.smokingstatus.ae.PcsClassifierAnnotator_libsvm

stopwords - Variable in class org.apache.ctakes.smokingstatus.MLutil.GenerateTrainingData

store(String, String) - Method in class org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel

Loads text from a file.

strength - Variable in class org.apache.ctakes.drugner.DrugMention

StrengthAnnotation - Class in org.apache.ctakes.drugner.type

Holds the value representing the unit of the drug dosage.

StrengthAnnotation() - Constructor for class org.apache.ctakes.drugner.type.StrengthAnnotation

Never called.

StrengthAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.StrengthAnnotation

Internal - constructor used by generator

StrengthAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.StrengthAnnotation

StrengthAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.StrengthAnnotation

StrengthAnnotation_Type - Class in org.apache.ctakes.drugner.type

Holds the value representing the unit of the drug dosage.

StrengthAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.StrengthAnnotation_Type

initialize variables to correspond with Cas Type and Features

StrengthCondition - Class in org.apache.ctakes.drugner.fsm.elements.conditions

Checks whether a token is a StrengthToken.

StrengthCondition() - Constructor for class org.apache.ctakes.drugner.fsm.elements.conditions.StrengthCondition

StrengthElement - Class in org.apache.ctakes.drugner.elements

StrengthElement() - Constructor for class org.apache.ctakes.drugner.elements.StrengthElement

StrengthElement(String, int, int) - Constructor for class org.apache.ctakes.drugner.elements.StrengthElement

StrengthFSM - Class in org.apache.ctakes.drugner.fsm.machines.elements

Uses one or more finite state machines to detect dosages in the given input of tokens.

StrengthFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.elements.StrengthFSM

Constructor

StrengthToken - Class in org.apache.ctakes.drugner.fsm.output.elements

StrengthToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.elements.StrengthToken

strengthUnit - Variable in class org.apache.ctakes.drugner.DrugMention

Span the drug form, if available.

StrengthUnitAnnotation - Class in org.apache.ctakes.drugner.type

Updated by JCasGen Tue Apr 09 12:44:10 EDT 2013 XML source: trunk/ctakes-drug-ner-res/src/main/resources/org/apache/ctakes/drugner/types/TypeSystem.xml

StrengthUnitAnnotation() - Constructor for class org.apache.ctakes.drugner.type.StrengthUnitAnnotation

Never called.

StrengthUnitAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.StrengthUnitAnnotation

Internal - constructor used by generator

StrengthUnitAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.StrengthUnitAnnotation

StrengthUnitAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.StrengthUnitAnnotation

StrengthUnitAnnotation_Type - Class in org.apache.ctakes.drugner.type

Updated by JCasGen Tue Apr 09 12:44:10 EDT 2013

StrengthUnitAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.StrengthUnitAnnotation_Type

initialize variables to correspond with Cas Type and Features

StrengthUnitCombinedCondition - Class in org.apache.ctakes.drugner.fsm.elements.conditions

Checks whether a token is a StrengthToken.

StrengthUnitCombinedCondition() - Constructor for class org.apache.ctakes.drugner.fsm.elements.conditions.StrengthUnitCombinedCondition

StrengthUnitCombinedToken - Class in org.apache.ctakes.drugner.fsm.output.elements

StrengthUnitCombinedToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.elements.StrengthUnitCombinedToken

StrengthUnitCondition - Class in org.apache.ctakes.drugner.fsm.elements.conditions

Checks whether a token is a StrengthToken.

StrengthUnitCondition() - Constructor for class org.apache.ctakes.drugner.fsm.elements.conditions.StrengthUnitCondition

StrengthUnitElement - Class in org.apache.ctakes.drugner.elements

StrengthUnitElement() - Constructor for class org.apache.ctakes.drugner.elements.StrengthUnitElement

StrengthUnitElement(String, int, int) - Constructor for class org.apache.ctakes.drugner.elements.StrengthUnitElement

StrengthUnitFSM - Class in org.apache.ctakes.drugner.fsm.machines.elements

Uses one or more finite state machines to detect dosages in the given input of tokens.

StrengthUnitFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.elements.StrengthUnitFSM

Constructor

StrengthUnitToken - Class in org.apache.ctakes.drugner.fsm.output.elements

StrengthUnitToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.elements.StrengthUnitToken

STRING_TYPE - Static variable in interface org.apache.ctakes.dictionary.lookup.MetaDataHitConst

StringAttributeValue - Class in org.apache.ctakes.smokingstatus.type.libsvm

Updated by JCasGen Tue Apr 09 12:43:45 EDT 2013 XML source: trunk/ctakes-smoking-status-res/src/main/resources/org/apache/ctakes/smokingstatus/types/TypeSystem.xml

StringAttributeValue() - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue

Never called.

StringAttributeValue(int, TOP_Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue

Internal - constructor used by generator

StringAttributeValue(JCas) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue

StringAttributeValue(JCas, int, int) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue

StringAttributeValue_Type - Class in org.apache.ctakes.smokingstatus.type.libsvm

Updated by JCasGen Tue Apr 09 12:43:45 EDT 2013

StringAttributeValue_Type(JCas, Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue_Type

initialize variables to correspond with Cas Type and Features

StringIntegerMapResource - Interface in org.apache.ctakes.core.resource

Resource that defines a map between a String (KEY) and Integer.

StringIntegerMapResourceImpl - Class in org.apache.ctakes.core.resource

Implementation for StringIntegerMapResource interface.

StringIntegerMapResourceImpl() - Constructor for class org.apache.ctakes.core.resource.StringIntegerMapResourceImpl

StringMapResource - Interface in org.apache.ctakes.core.resource

Resource that defines a map between a String (KEY) and Integer.

StringMapResourceImpl - Class in org.apache.ctakes.core.resource

Implementation for StringIntegerMapResource interface.

StringMapResourceImpl() - Constructor for class org.apache.ctakes.core.resource.StringMapResourceImpl

StringPreLookupFilterImpl - Class in org.apache.ctakes.dictionary.lookup.filter

StringPreLookupFilterImpl(Set<String>) - Constructor for class org.apache.ctakes.dictionary.lookup.filter.StringPreLookupFilterImpl

stringSlots - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation

The string-valued annotation attributes

StringsResource - Interface in org.apache.ctakes.core.resource

A Resource interface for getting an array of strings.

StringTable - Class in org.apache.ctakes.dictionary.lookup.strtable

StringTable(String[]) - Constructor for class org.apache.ctakes.dictionary.lookup.strtable.StringTable

StringTableDictionaryImpl - Class in org.apache.ctakes.dictionary.lookup.strtable

StringTableDictionaryImpl(StringTable, String) - Constructor for class org.apache.ctakes.dictionary.lookup.strtable.StringTableDictionaryImpl

StringTableFactory - Class in org.apache.ctakes.dictionary.lookup.strtable

StringTableFactory() - Constructor for class org.apache.ctakes.dictionary.lookup.strtable.StringTableFactory

StringTableRow - Class in org.apache.ctakes.dictionary.lookup.strtable

StringTableRow() - Constructor for class org.apache.ctakes.dictionary.lookup.strtable.StringTableRow

StringTableRowMetaDataHitImpl - Class in org.apache.ctakes.dictionary.lookup.strtable

StringTableRowMetaDataHitImpl(StringTableRow) - Constructor for class org.apache.ctakes.dictionary.lookup.strtable.StringTableRowMetaDataHitImpl

SUBCUTANEOUS - Static variable in class org.apache.ctakes.drugner.elements.RouteElement

SUBCUTANEOUS - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken

SubjectAttributeAnalysisEngine - Class in org.apache.ctakes.assertion.attributes

This class provides a basic subject attribute extraction technique based on dependency parses.

SubjectAttributeAnalysisEngine() - Constructor for class org.apache.ctakes.assertion.attributes.SubjectAttributeAnalysisEngine

SubjectAttributeClassifier - Class in org.apache.ctakes.assertion.attributes.subject

SubjectAttributeClassifier() - Constructor for class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier

SubjectCleartkAnalysisEngine - Class in org.apache.ctakes.assertion.medfacts.cleartk

SubjectCleartkAnalysisEngine() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.SubjectCleartkAnalysisEngine

SubjectFeaturesExtractor - Class in org.apache.ctakes.assertion.attributes.features

SubjectFeaturesExtractor Ports the features and classification decisions of the first version (logic) of the subject tool

SubjectFeaturesExtractor() - Constructor for class org.apache.ctakes.assertion.attributes.features.SubjectFeaturesExtractor

SubjectModifier - Class in org.apache.ctakes.typesystem.type.textsem

The person the observation is on, i.e., a Person mention.

SubjectModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.SubjectModifier

Never called.

SubjectModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SubjectModifier

Internal - constructor used by generator

SubjectModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SubjectModifier

SubjectModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SubjectModifier

SubjectModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem

The person the observation is on, i.e., a Person mention.

SubjectModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SubjectModifier_Type

initialize variables to correspond with Cas Type and Features

SubSection - Class in org.apache.ctakes.padtermspotter.type

Updated by JCasGen Tue Apr 09 12:44:01 EDT 2013 XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml

SubSection() - Constructor for class org.apache.ctakes.padtermspotter.type.SubSection

Never called.

SubSection(int, TOP_Type) - Constructor for class org.apache.ctakes.padtermspotter.type.SubSection

Internal - constructor used by generator

SubSection(JCas) - Constructor for class org.apache.ctakes.padtermspotter.type.SubSection

SubSection(JCas, int, int) - Constructor for class org.apache.ctakes.padtermspotter.type.SubSection

SubSection_Type - Class in org.apache.ctakes.padtermspotter.type

Updated by JCasGen Tue Apr 09 12:44:01 EDT 2013

SubSection_Type(JCas, Type) - Constructor for class org.apache.ctakes.padtermspotter.type.SubSection_Type

initialize variables to correspond with Cas Type and Features

SubSectionAnnotation - Class in org.apache.ctakes.drugner.type

Updated by JCasGen Tue Apr 09 12:44:10 EDT 2013 XML source: trunk/ctakes-drug-ner-res/src/main/resources/org/apache/ctakes/drugner/types/TypeSystem.xml

SubSectionAnnotation() - Constructor for class org.apache.ctakes.drugner.type.SubSectionAnnotation

Never called.

SubSectionAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.SubSectionAnnotation

Internal - constructor used by generator

SubSectionAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.SubSectionAnnotation

SubSectionAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.SubSectionAnnotation

SubSectionAnnotation_Type - Class in org.apache.ctakes.drugner.type

Updated by JCasGen Tue Apr 09 12:44:10 EDT 2013

SubSectionAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type

initialize variables to correspond with Cas Type and Features

SubSectionAnnotator - Class in org.apache.ctakes.padtermspotter.ae

SubSectionAnnotator() - Constructor for class org.apache.ctakes.padtermspotter.ae.SubSectionAnnotator

SubSectionIndicator - Class in org.apache.ctakes.drugner.fsm.output.util

SubSectionIndicator(int, int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.util.SubSectionIndicator

SubSectionIndicator - Class in org.apache.ctakes.padtermspotter.fsm.output

SubSectionIndicator(int, int, int) - Constructor for class org.apache.ctakes.padtermspotter.fsm.output.SubSectionIndicator

SubSectionIndicatorFSM - Class in org.apache.ctakes.drugner.fsm.machines.util

Uses one or more finite state machines to detect sub-sections in the given input of tokens.

SubSectionIndicatorFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.util.SubSectionIndicatorFSM

Constructor

SubSectionPadIdFSM - Class in org.apache.ctakes.padtermspotter.fsm.pad.machine

Uses one or more finite state machines to detect sub-sections in the given input of tokens.

SubSectionPadIdFSM() - Constructor for class org.apache.ctakes.padtermspotter.fsm.pad.machine.SubSectionPadIdFSM

Constructor

Subzone - Class in org.apache.ctakes.assertion.zoner.types

Updated by JCasGen Tue Apr 09 12:44:14 EDT 2013 XML source: trunk/ctakes-assertion-zoner-res/src/main/resources/org/apache/ctakes/assertion/zoner/types/TypeSystem.xml

Subzone() - Constructor for class org.apache.ctakes.assertion.zoner.types.Subzone

Never called.

Subzone(int, TOP_Type) - Constructor for class org.apache.ctakes.assertion.zoner.types.Subzone

Internal - constructor used by generator

Subzone(JCas) - Constructor for class org.apache.ctakes.assertion.zoner.types.Subzone

Subzone(JCas, int, int) - Constructor for class org.apache.ctakes.assertion.zoner.types.Subzone

Subzone_Type - Class in org.apache.ctakes.assertion.zoner.types

Updated by JCasGen Tue Apr 09 12:44:15 EDT 2013

Subzone_Type(JCas, Type) - Constructor for class org.apache.ctakes.assertion.zoner.types.Subzone_Type

initialize variables to correspond with Cas Type and Features

SuffixFrequencyFSM - Class in org.apache.ctakes.drugner.fsm.machines.util

Uses one or more finite state machines to detect frequency suffix data in the given input of tokens.

SuffixFrequencyFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM

Constructor

SuffixFrequencyToken - Class in org.apache.ctakes.drugner.fsm.output.util

SuffixFrequencyToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.util.SuffixFrequencyToken

SuffixMaxentModelResourceImpl - Class in org.apache.ctakes.core.resource

Loads a suffix-sensitive GISModel into memory as a shared UIMA resource.

SuffixMaxentModelResourceImpl() - Constructor for class org.apache.ctakes.core.resource.SuffixMaxentModelResourceImpl

SuffixStrengthAnnotation - Class in org.apache.ctakes.drugner.type

The suffix portion of dosage strength determination for the Drug NER profile.

SuffixStrengthAnnotation() - Constructor for class org.apache.ctakes.drugner.type.SuffixStrengthAnnotation

Never called.

SuffixStrengthAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.SuffixStrengthAnnotation

Internal - constructor used by generator

SuffixStrengthAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.SuffixStrengthAnnotation

SuffixStrengthAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.SuffixStrengthAnnotation

SuffixStrengthAnnotation_Type - Class in org.apache.ctakes.drugner.type

The suffix portion of dosage strength determination for the Drug NER profile.

SuffixStrengthAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.SuffixStrengthAnnotation_Type

initialize variables to correspond with Cas Type and Features

SuffixStrengthFSM - Class in org.apache.ctakes.drugner.fsm.machines.util

Uses one or more finite state machines to detect strength suffix information adjoined to dosage data in the given input of tokens.

SuffixStrengthFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.util.SuffixStrengthFSM

Constructor

SuffixStrengthToken - Class in org.apache.ctakes.drugner.fsm.output.util

SuffixStrengthToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.util.SuffixStrengthToken

SUM - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken

SUMMATION_STATUS - Static variable in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement

SUPPOSITORY - Static variable in class org.apache.ctakes.drugner.elements.FormElement

SurroundingExtractor - Class in org.apache.ctakes.assertion.medfacts.cleartk.extractors

SurroundingExtractor() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.extractors.SurroundingExtractor

svmCost - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.ParameterSettings

svmGamma - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.ParameterSettings

svmKernel - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.ParameterSettings

svmKernelIndex - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.ParameterSettings

SvmUtils - Class in org.apache.ctakes.coreference.util

SvmUtils() - Constructor for class org.apache.ctakes.coreference.util.SvmUtils

SvmVectorCreator - Class in org.apache.ctakes.coreference.util

SvmVectorCreator(HashSet<String>) - Constructor for class org.apache.ctakes.coreference.util.SvmVectorCreator

SymbolToken - Interface in org.apache.ctakes.core.fsm.token

SymbolToken - Class in org.apache.ctakes.typesystem.type.syntax

Differentiates a token as being a symbol rather than a punctuation, contraction, newline, word, or number.

SymbolToken() - Constructor for class org.apache.ctakes.typesystem.type.syntax.SymbolToken

Never called.

SymbolToken(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SymbolToken

Internal - constructor used by generator

SymbolToken(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SymbolToken

SymbolToken(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SymbolToken

SymbolToken_Type - Class in org.apache.ctakes.typesystem.type.syntax

Differentiates a token as being a symbol rather than a punctuation, contraction, newline, word, or number.

SymbolToken_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SymbolToken_Type

initialize variables to correspond with Cas Type and Features

SymbolTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters

Adapts JCas token annotation to interface expected by the Context Dependent Tokenizer.

SymbolTokenAdapter(SymbolToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.SymbolTokenAdapter

SymbolValueCondition - Class in org.apache.ctakes.core.fsm.condition

SymbolValueCondition(char) - Constructor for class org.apache.ctakes.core.fsm.condition.SymbolValueCondition

SyntaxAttributeCalculator - Class in org.apache.ctakes.coreference.util

SyntaxAttributeCalculator(JCas, Markable, Markable) - Constructor for class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator

SyntaxAttributeCalculator(JCas, Markable, Markable, WikiIndex) - Constructor for class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator

syntheticInsts - Variable in class org.apache.ctakes.temporal.utils.SMOTEplus

SYRINGE - Static variable in class org.apache.ctakes.drugner.elements.FormElement

SYRUP - Static variable in class org.apache.ctakes.drugner.elements.FormElement

sysId2AlignId - Variable in class org.apache.ctakes.coreference.util.GoldStandardLabeler

sysSpan2id - Variable in class org.apache.ctakes.coreference.util.GoldStandardLabeler

sysSpans - Variable in class org.apache.ctakes.coreference.util.GoldStandardLabeler

SystemTemporalRelationPrinter - Class in org.apache.ctakes.temporal.eval

Print temporal relations that the system adds to the CAS.

SystemTemporalRelationPrinter(File, File, File, File, boolean) - Constructor for class org.apache.ctakes.temporal.eval.SystemTemporalRelationPrinter