A B C D E F G H I J K L M N O P Q R S T U V W X

D

DAILY - Static variable in class org.apache.ctakes.drugner.elements.FrequencyUnitElement
 
Date - Class in org.apache.ctakes.typesystem.type.refsem
A normalized form for dates, namely with day, month, and year.
Date() - Constructor for class org.apache.ctakes.typesystem.type.refsem.Date
Never called.
Date(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Date
Internal - constructor used by generator
Date(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Date
 
Date_Type - Class in org.apache.ctakes.typesystem.type.refsem
A normalized form for dates, namely with day, month, and year.
Date_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Date_Type
initialize variables to correspond with Cas Type and Features
DateAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.DateAnnotation Updated by JCasGen Tue Apr 09 11:44:43 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-pad-term-spotter/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml
DateAnnotation() - Constructor for class org.apache.ctakes.typesystem.type.textsem.DateAnnotation
Never called.
DateAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.DateAnnotation
Internal - constructor used by generator
DateAnnotation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.DateAnnotation
 
DateAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.DateAnnotation
 
DateAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.DateAnnotation Updated by JCasGen Tue Apr 09 11:44:43 EDT 2013
DateAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.DateAnnotation_Type
initialize variables to correspond with Cas Type and Features
DateAttributeValue - Class in org.apache.ctakes.smokingstatus.type.libsvm
Updated by JCasGen Tue Apr 09 11:47:03 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-smoking-status/src/main/resources/org/apache/ctakes/smokingstatus/types/TypeSystem.xml
DateAttributeValue() - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue
Never called.
DateAttributeValue(int, TOP_Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue
Internal - constructor used by generator
DateAttributeValue(JCas) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue
 
DateAttributeValue(JCas, int, int) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue
 
DateAttributeValue_Type - Class in org.apache.ctakes.smokingstatus.type.libsvm
Updated by JCasGen Tue Apr 09 11:47:03 EDT 2013
DateAttributeValue_Type(JCas, Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue_Type
initialize variables to correspond with Cas Type and Features
DateFSM - Class in org.apache.ctakes.core.fsm.machine
Uses one or more finite state machines to detect dates in the given input of tokens.
DateFSM() - Constructor for class org.apache.ctakes.core.fsm.machine.DateFSM
Constructor
DateParser - Class in org.apache.ctakes.core.util
 
DateParser() - Constructor for class org.apache.ctakes.core.util.DateParser
 
DateToken - Class in org.apache.ctakes.core.fsm.output
 
DateToken(int, int) - Constructor for class org.apache.ctakes.core.fsm.output.DateToken
 
DayNightWordCondition - Class in org.apache.ctakes.core.fsm.condition
Handles case of A.M.
DayNightWordCondition() - Constructor for class org.apache.ctakes.core.fsm.condition.DayNightWordCondition
 
debugAnnotationsInCas(JCas, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine
 
DebugConsumerImpl - Class in org.apache.ctakes.dictionary.lookup.ae
LookupConsumer implementation that outputs debug info to the log about each LookupHit.
DebugConsumerImpl(UimaContext, Properties) - Constructor for class org.apache.ctakes.dictionary.lookup.ae.DebugConsumerImpl
 
DecimalCondition - Class in org.apache.ctakes.core.fsm.condition
 
DecimalCondition() - Constructor for class org.apache.ctakes.core.fsm.condition.DecimalCondition
 
DecimalRangeCondition - Class in org.apache.ctakes.core.fsm.condition
 
DecimalRangeCondition(double, double) - Constructor for class org.apache.ctakes.core.fsm.condition.DecimalRangeCondition
 
DecimalStrengthAnnotation - Class in org.apache.ctakes.drugner.type
The decimal portion of dosages stength determination for the Drug NER profile.
DecimalStrengthAnnotation() - Constructor for class org.apache.ctakes.drugner.type.DecimalStrengthAnnotation
Never called.
DecimalStrengthAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.DecimalStrengthAnnotation
Internal - constructor used by generator
DecimalStrengthAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.DecimalStrengthAnnotation
 
DecimalStrengthAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.DecimalStrengthAnnotation
 
DecimalStrengthAnnotation_Type - Class in org.apache.ctakes.drugner.type
The decimal portion of dosages stength determination for the Drug NER profile.
DecimalStrengthAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.DecimalStrengthAnnotation_Type
initialize variables to correspond with Cas Type and Features
DecimalStrengthFSM - Class in org.apache.ctakes.drugner.fsm.machines.elements
Uses one or more finite state machines to detect decimal fractions in the given input of tokens.
DecimalStrengthFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.elements.DecimalStrengthFSM
Constructor
DecimalStrengthStatusCondition - Class in org.apache.ctakes.drugner.fsm.elements.conditions
Checks whether a token is a FractionToken.
DecimalStrengthStatusCondition() - Constructor for class org.apache.ctakes.drugner.fsm.elements.conditions.DecimalStrengthStatusCondition
 
DecimalStrengthToken - Class in org.apache.ctakes.drugner.fsm.output.util
 
DecimalStrengthToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.util.DecimalStrengthToken
 
DecimalToken - Interface in org.apache.ctakes.core.fsm.token
 
DecimalTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters
Adapts JCas token annotation to interface expected by the Context Dependent Tokenizer.
DecimalTokenAdapter(NumToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.DecimalTokenAdapter
 
DecimalTokenAdapter - Class in org.apache.ctakes.core.fsm.token.adapter
 
DecimalTokenAdapter(Token) - Constructor for class org.apache.ctakes.core.fsm.token.adapter.DecimalTokenAdapter
 
DecimalValueCondition - Class in org.apache.ctakes.core.fsm.condition
 
DecimalValueCondition(double) - Constructor for class org.apache.ctakes.core.fsm.condition.DecimalValueCondition
 
DECREASE - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken
 
DECREASE_STATUS - Static variable in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement
 
DECREASEFROM - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken
 
DEFAULT_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearParserDependencyParserAE
 
DEFAULT_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearParserSemanticRoleLabelerAE
 
DEFAULT_PARSER_ALGORITHM_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearParserDependencyParserAE
 
DefaultChunkCreator - Class in org.apache.ctakes.chunker.ae
This chunker creator simply creates annotations of type edu.mayo.bmi.chunker.type.Chunk and sets the chunkType feature of the annotation to the passed in parameter chunkType.
DefaultChunkCreator() - Constructor for class org.apache.ctakes.chunker.ae.DefaultChunkCreator
 
DegreeOf - Class in org.apache.ctakes.typesystem.type.relation
A UMLS relation between an attribute and an entity/event.
DegreeOf() - Constructor for class org.apache.ctakes.typesystem.type.relation.DegreeOf
Never called.
DegreeOf(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.DegreeOf
Internal - constructor used by generator
DegreeOf(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.DegreeOf
 
DegreeOf_Type - Class in org.apache.ctakes.typesystem.type.relation
A UMLS relation between an attribute and an entity/event.
DegreeOf_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.DegreeOf_Type
initialize variables to correspond with Cas Type and Features
DegreeOfRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae
Identifies Degree_Of relation between entities and modifiers
DegreeOfRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.DegreeOfRelationExtractorAnnotator
 
Delim - Class in org.apache.ctakes.dependency.parser.util
 
Delim() - Constructor for class org.apache.ctakes.dependency.parser.util.Delim
 
DEM - Static variable in class org.apache.ctakes.coreference.util.CorefConsts
 
dem_coref_feats - Static variable in class org.apache.ctakes.coreference.util.FeatureVector
 
demFeatSet - Static variable in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
 
DemMarkable - Class in org.apache.ctakes.coreference.type
Updated by JCasGen Tue Apr 09 11:42:44 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml
DemMarkable() - Constructor for class org.apache.ctakes.coreference.type.DemMarkable
Never called.
DemMarkable(int, TOP_Type) - Constructor for class org.apache.ctakes.coreference.type.DemMarkable
Internal - constructor used by generator
DemMarkable(JCas) - Constructor for class org.apache.ctakes.coreference.type.DemMarkable
 
DemMarkable(JCas, int, int) - Constructor for class org.apache.ctakes.coreference.type.DemMarkable
 
DemMarkable_Type - Class in org.apache.ctakes.coreference.type
Updated by JCasGen Tue Apr 09 11:42:44 EDT 2013
DemMarkable_Type(JCas, Type) - Constructor for class org.apache.ctakes.coreference.type.DemMarkable_Type
initialize variables to correspond with Cas Type and Features
Demographics - Class in org.apache.ctakes.typesystem.type.structured
Demographic information about the patient in a clinical document.
Demographics() - Constructor for class org.apache.ctakes.typesystem.type.structured.Demographics
Never called.
Demographics(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.Demographics
Internal - constructor used by generator
Demographics(JCas) - Constructor for class org.apache.ctakes.typesystem.type.structured.Demographics
 
Demographics_Type - Class in org.apache.ctakes.typesystem.type.structured
Demographic information about the patient in a clinical document.
Demographics_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.Demographics_Type
initialize variables to correspond with Cas Type and Features
DEP_DUMMY_MODEL_FILE - Static variable in class org.apache.ctakes.dependency.parser.ae.util.TestClearParserAnalysisEngines
 
DEP_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearParserDescriptors
 
DEPENDENCY_FILE_PARAM - Static variable in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader
"DependencyFile" is a required, single, string parameter that specifies the location of a data file that contains dependency data in it.
DependencyFileCollectionReader - Class in org.apache.ctakes.dependency.parser.cr
This collection reader reads in dependency tree training/test data in a tab- delimited format.
DependencyFileCollectionReader() - Constructor for class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader
 
DependencyNodeWriter - Class in org.apache.ctakes.dependency.parser
CasConsumer that writes a JCas (the current view) to an xml file
DependencyNodeWriter() - Constructor for class org.apache.ctakes.dependency.parser.DependencyNodeWriter
 
DependencyParseUtils - Class in org.apache.ctakes.relationextractor.ae.features
 
DependencyParseUtils() - Constructor for class org.apache.ctakes.relationextractor.ae.features.DependencyParseUtils
 
DependencyPath - Class in org.apache.ctakes.dependency.parser.util
 
DependencyPath() - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyPath
 
DependencyPathFeaturesExtractor - Class in org.apache.ctakes.relationextractor.ae.features
 
DependencyPathFeaturesExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.DependencyPathFeaturesExtractor
 
DependencyRegex - Class in org.apache.ctakes.dependency.parser.util
 
DependencyRegex() - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyRegex
 
DependencyRegex(DependencyPath) - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyRegex
 
DependencyRegex(String) - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyRegex
 
DependencyRegex(DepNode[], int) - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyRegex
 
DependencyRegex(ConllDependencyNode[], int) - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyRegex
 
DependencyTreeFeaturesExtractor - Class in org.apache.ctakes.relationextractor.ae.features
 
DependencyTreeFeaturesExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.DependencyTreeFeaturesExtractor
 
DependencyUtility - Class in org.apache.ctakes.dependency.parser.util
 
DependencyUtility() - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyUtility
 
depLca - Variable in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
 
depModelFile - Variable in class org.apache.ctakes.dependency.parser.ae.util.TestClearParserAnalysisEngines.Options
 
depPath - Variable in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
 
descDir - Variable in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorTrain.Options
 
description() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
Returns a String representation of this object, including its type, and all attributes and references.
destroy() - Method in class org.apache.ctakes.padtermspotter.cc.RadialogyTermLookup
 
destroy() - Method in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries
 
DEVLOC - Variable in class org.apache.ctakes.relationextractor.data.Splitter
 
devSize - Variable in class org.apache.ctakes.relationextractor.data.Splitter
 
Dictionary - Interface in org.apache.ctakes.dictionary.lookup
 
DictionaryEngine - Class in org.apache.ctakes.dictionary.lookup
The engine adds additional functionality to executing a dictionary.
DictionaryEngine(Dictionary, boolean) - Constructor for class org.apache.ctakes.dictionary.lookup.DictionaryEngine
Constructor
DictionaryException - Exception in org.apache.ctakes.dictionary.lookup
 
DictionaryException(Throwable) - Constructor for exception org.apache.ctakes.dictionary.lookup.DictionaryException
 
DictionaryLookupAnnotator - Class in org.apache.ctakes.dictionary.lookup.ae
UIMA annotator that identified entities based on lookup.
DictionaryLookupAnnotator() - Constructor for class org.apache.ctakes.dictionary.lookup.ae.DictionaryLookupAnnotator
 
differ(int, int) - Method in class org.apache.ctakes.coreference.util.ParentPtrTree
 
DirectLookupInitializerImpl - Class in org.apache.ctakes.dictionary.lookup.ae
 
DirectLookupInitializerImpl(UimaContext, Properties) - Constructor for class org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl
 
DirectPassThroughImpl - Class in org.apache.ctakes.dictionary.lookup.algorithms
Each individual LookupToken is referenced against a Dictionary.
DirectPassThroughImpl(DictionaryEngine, PhraseBuilder) - Constructor for class org.apache.ctakes.dictionary.lookup.algorithms.DirectPassThroughImpl
Constructor
DiseaseDisorder - Class in org.apache.ctakes.typesystem.type.refsem
This is an Event from the UMLS semantic group of Disorders (except that Sign and Symptom types are separate).
DiseaseDisorder() - Constructor for class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
Never called.
DiseaseDisorder(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
Internal - constructor used by generator
DiseaseDisorder(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
 
DiseaseDisorder_Type - Class in org.apache.ctakes.typesystem.type.refsem
This is an Event from the UMLS semantic group of Disorders (except that Sign and Symptom types are separate).
DiseaseDisorder_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
initialize variables to correspond with Cas Type and Features
DisjoinCondition - Class in org.apache.ctakes.core.fsm.condition
 
DisjoinCondition(Condition, Condition) - Constructor for class org.apache.ctakes.core.fsm.condition.DisjoinCondition
 
displayContext - Variable in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorConsumer
 
displayEntities - Variable in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorConsumer
 
distance(String, String) - Static method in class org.apache.ctakes.coreference.util.EditDistance
 
distance(String, String, boolean) - Static method in class org.apache.ctakes.coreference.util.EditDistance
 
DISTANCE - Static variable in class org.apache.ctakes.drugner.ae.DrugMentionAnnotator
 
DISTANCE - Static variable in class org.apache.ctakes.padtermspotter.ae.PADHitAnnotator
Count of annotations defined by DISTANCE_ANN_TYPE between PADHitAnnotator.ANNOTATION_PART_ONE_OF_PAIR and PADHitAnnotator.ANNOTATION_PART_TWO_OF_PAIR
DISTANCE_ANN_TYPE - Static variable in class org.apache.ctakes.drugner.ae.DrugMentionAnnotator
Annotation type that is used to count the distance.
DISTANCE_ANN_TYPE - Static variable in class org.apache.ctakes.padtermspotter.ae.PADHitAnnotator
Annotation type that is used to count the distance.
DN_ARC_A - Static variable in class org.apache.ctakes.dependency.parser.util.Delim
 
DN_ARC_B - Static variable in class org.apache.ctakes.dependency.parser.util.Delim
 
DocumentID - Class in org.apache.ctakes.smokingstatus.type.libsvm
Updated by JCasGen Tue Apr 09 11:47:03 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-smoking-status/src/main/resources/org/apache/ctakes/smokingstatus/types/TypeSystem.xml
DocumentID() - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID
Never called.
DocumentID(int, TOP_Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID
Internal - constructor used by generator
DocumentID(JCas) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID
 
DocumentID(JCas, int, int) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID
 
DocumentID - Class in org.apache.ctakes.typesystem.type.structured
Equivalent to cTAKES: org.apache.ctakes.typesystem.type.DocumentID, but its supertype changed to uima.cas.TOP Updated by JCasGen Tue Apr 09 11:44:36 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-pad-term-spotter/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml
DocumentID() - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentID
Never called.
DocumentID(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentID
Internal - constructor used by generator
DocumentID(JCas) - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentID
 
DocumentID_Type - Class in org.apache.ctakes.smokingstatus.type.libsvm
Updated by JCasGen Tue Apr 09 11:47:03 EDT 2013
DocumentID_Type(JCas, Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID_Type
initialize variables to correspond with Cas Type and Features
DocumentID_Type - Class in org.apache.ctakes.typesystem.type.structured
Equivalent to cTAKES: org.apache.ctakes.typesystem.type.DocumentID, but its supertype changed to uima.cas.TOP Updated by JCasGen Tue Apr 09 11:44:37 EDT 2013
DocumentID_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentID_Type
initialize variables to correspond with Cas Type and Features
DocumentIDAnnotationUtil - Class in org.apache.ctakes.core.util
 
DocumentIDAnnotationUtil() - Constructor for class org.apache.ctakes.core.util.DocumentIDAnnotationUtil
 
DocumentMetaData - Class in org.apache.ctakes.preprocessor
 
DocumentMetaData() - Constructor for class org.apache.ctakes.preprocessor.DocumentMetaData
 
DocumentSection - Class in org.apache.ctakes.core.util
Class containing relevant information for a given document section
DocumentSection(int, int, String) - Constructor for class org.apache.ctakes.core.util.DocumentSection
 
doesSubsume(Annotation, Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
Checks if one annotation subsumes another
dosage - Variable in class org.apache.ctakes.drugner.DrugMention
e.g.
DosageCondition - Class in org.apache.ctakes.drugner.fsm.elements.conditions
Checks whether a token is a DosageToken.
DosageCondition() - Constructor for class org.apache.ctakes.drugner.fsm.elements.conditions.DosageCondition
 
DosageElement - Class in org.apache.ctakes.drugner.elements
 
DosageElement() - Constructor for class org.apache.ctakes.drugner.elements.DosageElement
 
DosageElement(String, int, int) - Constructor for class org.apache.ctakes.drugner.elements.DosageElement
 
DosagesAnnotation - Class in org.apache.ctakes.drugner.type
The dosage determination for the Drug NER profile.
DosagesAnnotation() - Constructor for class org.apache.ctakes.drugner.type.DosagesAnnotation
Never called.
DosagesAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.DosagesAnnotation
Internal - constructor used by generator
DosagesAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.DosagesAnnotation
 
DosagesAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.DosagesAnnotation
 
DosagesAnnotation_Type - Class in org.apache.ctakes.drugner.type
The dosage determination for the Drug NER profile.
DosagesAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.DosagesAnnotation_Type
initialize variables to correspond with Cas Type and Features
DosagesFSM - Class in org.apache.ctakes.drugner.fsm.machines.elements
Uses one or more finite state machines to detect dosages in the given input of tokens.
DosagesFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.elements.DosagesFSM
Constructor
DosageToken - Class in org.apache.ctakes.drugner.fsm.output.elements
 
DosageToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.elements.DosageToken
 
dotProd(svm_node[], svm_node[]) - Static method in class org.apache.ctakes.utils.kernel.Kernel
 
DrugChangeStatusAnnotation - Class in org.apache.ctakes.drugner.type
The change status of dosages determination for the Drug NER profile.
DrugChangeStatusAnnotation() - Constructor for class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation
Never called.
DrugChangeStatusAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation
Internal - constructor used by generator
DrugChangeStatusAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation
 
DrugChangeStatusAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation
 
DrugChangeStatusAnnotation_Type - Class in org.apache.ctakes.drugner.type
The change status of dosages determination for the Drug NER profile.
DrugChangeStatusAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation_Type
initialize variables to correspond with Cas Type and Features
DrugChangeStatusCondition - Class in org.apache.ctakes.drugner.fsm.elements.conditions
Checks whether a token is a DrugChangeStatusToken.
DrugChangeStatusCondition() - Constructor for class org.apache.ctakes.drugner.fsm.elements.conditions.DrugChangeStatusCondition
 
DrugChangeStatusElement - Class in org.apache.ctakes.drugner.elements
 
DrugChangeStatusElement() - Constructor for class org.apache.ctakes.drugner.elements.DrugChangeStatusElement
 
DrugChangeStatusElement(String, int, int) - Constructor for class org.apache.ctakes.drugner.elements.DrugChangeStatusElement
 
DrugChangeStatusFSM - Class in org.apache.ctakes.drugner.fsm.machines.elements
Uses one or more finite state machines to detect change status data in the given input of tokens.
DrugChangeStatusFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
Constructor
DrugChangeStatusToken - Class in org.apache.ctakes.drugner.fsm.output.elements
 
DrugChangeStatusToken(int, int, String) - Constructor for class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken
 
DrugLookupWindowAnnotation - Class in org.apache.ctakes.typesystem.type.textspan
Similar to LookupWindowAnnotation however, these annotations are restricted to the segments/sections specified in the parameter - sectionOverrideSet - in DrugCNP2LookupWindow Updated by JCasGen Tue Apr 09 11:46:09 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-drug-ner/src/main/resources/org/apache/ctakes/drugner/types/TypeSystem.xml
DrugLookupWindowAnnotation() - Constructor for class org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation
Never called.
DrugLookupWindowAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation
Internal - constructor used by generator
DrugLookupWindowAnnotation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation
 
DrugLookupWindowAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation
 
DrugLookupWindowAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textspan
Similar to LookupWindowAnnotation however, these annotations are restricted to the segments/sections specified in the parameter - sectionOverrideSet - in DrugCNP2LookupWindow Updated by JCasGen Tue Apr 09 11:46:09 EDT 2013
DrugLookupWindowAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation_Type
initialize variables to correspond with Cas Type and Features
DrugMention - Class in org.apache.ctakes.drugner
Contains information from a single document - is not the result of data mining.
DrugMention(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.DrugMention
 
DrugMentionAnnotation - Class in org.apache.ctakes.drugner.type
Updated by JCasGen Tue Apr 09 11:46:08 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-drug-ner/src/main/resources/org/apache/ctakes/drugner/types/TypeSystem.xml
DrugMentionAnnotation() - Constructor for class org.apache.ctakes.drugner.type.DrugMentionAnnotation
Never called.
DrugMentionAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.DrugMentionAnnotation
Internal - constructor used by generator
DrugMentionAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.DrugMentionAnnotation
 
DrugMentionAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.DrugMentionAnnotation
 
DrugMentionAnnotation_Type - Class in org.apache.ctakes.drugner.type
Updated by JCasGen Tue Apr 09 11:46:08 EDT 2013
DrugMentionAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
initialize variables to correspond with Cas Type and Features
DrugMentionAnnotator - Class in org.apache.ctakes.drugner.ae
Finds tokens based on context.
DrugMentionAnnotator() - Constructor for class org.apache.ctakes.drugner.ae.DrugMentionAnnotator
 
drugMentionText - Variable in class org.apache.ctakes.drugner.DrugMention
The word(s) in the note that indicate the drug.
DrugModel - Interface in org.apache.ctakes.drugner
 
DTDloader - Class in org.apache.ctakes.preprocessor
Use to load DTD from classpath.
DTDloader(File) - Constructor for class org.apache.ctakes.preprocessor.DTDloader
 
dumpDependencyGraph(Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
 
dumpDependencyRelations(JCas, Annotation) - Static method in class org.apache.ctakes.relationextractor.ae.features.DependencyParseUtils
 
dumpSRLOutput(Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.SRLUtility
 
duration - Variable in class org.apache.ctakes.drugner.DrugMention
e.g.
DurationAnnotation - Class in org.apache.ctakes.drugner.type
The duration determination for the Drug NER profile.
DurationAnnotation() - Constructor for class org.apache.ctakes.drugner.type.DurationAnnotation
Never called.
DurationAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.DurationAnnotation
Internal - constructor used by generator
DurationAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.DurationAnnotation
 
DurationAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.DurationAnnotation
 
DurationAnnotation_Type - Class in org.apache.ctakes.drugner.type
The duration determination for the Drug NER profile.
DurationAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.DurationAnnotation_Type
initialize variables to correspond with Cas Type and Features
DurationElement - Class in org.apache.ctakes.drugner.elements
 
DurationElement() - Constructor for class org.apache.ctakes.drugner.elements.DurationElement
 
DurationElement(String, int, int) - Constructor for class org.apache.ctakes.drugner.elements.DurationElement
 
DurationFSM - Class in org.apache.ctakes.drugner.fsm.machines.elements
Uses one or more finite state machines to detect duration data in the given input of tokens.
DurationFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.elements.DurationFSM
Constructor
DurationToken - Class in org.apache.ctakes.drugner.fsm.output.elements
 
DurationToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.elements.DurationToken
 
DxContextAnalyzerImpl - Class in org.apache.ctakes.padtermspotter.impl
 
DxContextAnalyzerImpl() - Constructor for class org.apache.ctakes.padtermspotter.impl.DxContextAnalyzerImpl
 
DxContextHitConsumerImpl - Class in org.apache.ctakes.padtermspotter.impl
 
DxContextHitConsumerImpl() - Constructor for class org.apache.ctakes.padtermspotter.impl.DxContextHitConsumerImpl
 
DxIndicatorFSM - Class in org.apache.ctakes.padtermspotter.fsm.pad.machine
Uses one or more finite state machines to detect ???
DxIndicatorFSM() - Constructor for class org.apache.ctakes.padtermspotter.fsm.pad.machine.DxIndicatorFSM
Constructor

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