A B C D E F G H I J K L M N O P Q R S T U V W X

M

m - Variable in class org.apache.ctakes.coreference.ae.MarkableProb
 
m1 - Variable in class org.apache.ctakes.coreference.util.PairAttributeCalculator
 
m2 - Variable in class org.apache.ctakes.coreference.util.PairAttributeCalculator
 
main(String[]) - Static method in class org.apache.ctakes.assertion.attributes.generic.GenericAttributeClassifier
 
main(String[]) - Static method in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier
 
main(String[]) - Static method in class org.apache.ctakes.assertion.eval.AssertionEvalBasedOnModifier
 
main(String[]) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.TrainAssertionModel
 
main(String[]) - Static method in class org.apache.ctakes.assertion.medfacts.Converti2b2AnnotationsToCTAKES
 
main(String[]) - Static method in class org.apache.ctakes.assertion.medfacts.ConvertXMIAssertionsToi2b2Format
 
main(String[]) - Static method in class org.apache.ctakes.constituency.parser.util.CommandLineParserUtil
 
main(String[]) - Static method in class org.apache.ctakes.core.ae.SentenceDetector
Train a new sentence detector from the training data in the first file and write the model to the second file.
The training data file is expected to have one sentence per line.
main(String[]) - Static method in class org.apache.ctakes.core.ae.TokenizerAnnotatorPTBTests
 
main(String[]) - Static method in class org.apache.ctakes.core.cc.CASConsumerTestDriver
 
main(String[]) - Static method in class org.apache.ctakes.core.ci.HyphenTextModifierImpl
Simple tests of TextModification
Output expected:
UNSUPPORTED: TextModification with offset changes.
UNSUPPORTED: TextModification with offset changes.
UNSUPPORTED: TextModification with offset changes.
Orig: Non Hodgkin's the x ray without any non small cell complications.
New: (new text not generated, see previous messages) Non-Hodgkin Orig: 0-12 New: 0-11
x-ray Orig: 19-25 New: 18-23
non-small-cell Orig: 38-53 New: 36-50
Orig: Non Hodgkin's the x ray without any non small cell complications.
New: Non-Hodgkin's the x-ray without any non-small-cell complications.
Non-Hodgkin Orig: 0-11 New: 0-11
x-ray Orig: 18-23 New: 18-23
non-small-cell Orig: 36-50 New: 36-50
Note the case of the words doesn't matter.
main(String[]) - Static method in class org.apache.ctakes.core.nlp.tokenizer.ContractionsPTB
 
main(String[]) - Static method in class org.apache.ctakes.core.nlp.tokenizer.HyphenatedPTB
 
main(String[]) - Static method in class org.apache.ctakes.core.nlp.tokenizer.TokenizerHelper
 
main(String[]) - Static method in class org.apache.ctakes.core.nlp.tokenizer.TokenizerPTB
 
main(String[]) - Static method in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes
Trains a new sentence detection model.
main(String[]) - Static method in class org.apache.ctakes.coreference.eval.helpers.Test
 
main(String[]) - Static method in class org.apache.ctakes.coreference.treekernel.training.KernelMatrixCompositor
 
main(String[]) - Static method in class org.apache.ctakes.coreference.treekernel.training.LinearKernelMatrixWriter
 
main(String[]) - Static method in class org.apache.ctakes.coreference.treekernel.training.TreeKernelTrainer
 
main(String[]) - Static method in class org.apache.ctakes.dependency.parser.ae.util.TestClearParserAnalysisEngines
 
main(String[]) - Static method in class org.apache.ctakes.dependency.parser.ae.util.WriteClearParserDescriptors
 
main(String[]) - Static method in class org.apache.ctakes.postagger.TagDictionaryCreator
Read a file containing POS-tagged tokens in OpenNLP format, and output a tagDictionary (OpenNLP format)
Example input:
winning_JJ body_NN
winning_VBG
Example output:
body NN
winning JJ VBG
main(String[]) - Static method in class org.apache.ctakes.postagger.test.CpeTests
main class.
main(String[]) - Static method in class org.apache.ctakes.preprocessor.test.TestDriver
 
main(String[]) - Static method in class org.apache.ctakes.relationextractor.data.CategoricalDistribution
 
main(String[]) - Static method in class org.apache.ctakes.relationextractor.data.Splitter
 
main(String[]) - Static method in class org.apache.ctakes.relationextractor.data.Stats
 
main(String[]) - Static method in class org.apache.ctakes.relationextractor.eval.ModifierExtractorEvaluation
 
main(String[]) - Static method in class org.apache.ctakes.relationextractor.eval.PreprocessAndWriteXmi
 
main(String[]) - Static method in class org.apache.ctakes.relationextractor.eval.PrintRelationStatistics
 
main(String[]) - Static method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation
 
main(String[]) - Static method in class org.apache.ctakes.relationextractor.knowtator.RelationInfo
 
main(String[]) - Static method in class org.apache.ctakes.relationextractor.pipelines.GoldEntityAndRelationReaderPipeline
 
main(String[]) - Static method in class org.apache.ctakes.relationextractor.pipelines.RelationAnnotationAnalysis
 
main(String[]) - Static method in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorPipeline
 
main(String[]) - Static method in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorPipelineSingleCas
 
main(String[]) - Static method in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorTrain
 
main(String[]) - Static method in class org.apache.ctakes.smokingstatus.MLutil.GenerateTrainingData
keywordsFile and stopwordsFile must point to the files in the resources dataFile is your own sentence-level data in the format (class_label: C, P, S): sentence|class_label sentence|class_label ...
main(String[]) - Static method in class org.apache.ctakes.smokingstatus.patientLevel.PatientLevelSmokingStatus
 
main(String[]) - Static method in class org.apache.ctakes.utils.build.BuildPear
 
main(String[]) - Static method in class org.apache.ctakes.utils.build.BuildPipelinePears
 
main(String[]) - Static method in class org.apache.ctakes.utils.build.InstallPearSilently
Starts the application.
main(String[]) - Static method in class org.apache.ctakes.utils.build.InstallPipelineFromPears
 
main(String[]) - Static method in class org.apache.ctakes.utils.tree.SimpleTree
 
main(String[]) - Static method in class org.apache.ctakes.utils.xcas_comparison.Compare
 
main(String[]) - Static method in class org.apache.ctakes.utils.xcas_comparison.ConvertAndCompare
 
makeFeatures(String) - Method in class org.apache.ctakes.smokingstatus.MLutil.GenerateTrainingData
set "features" - list of features.
ManifestationOf - Class in org.apache.ctakes.typesystem.type.relation
A UMLS relation between clinical elements.
ManifestationOf() - Constructor for class org.apache.ctakes.typesystem.type.relation.ManifestationOf
Never called.
ManifestationOf(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ManifestationOf
Internal - constructor used by generator
ManifestationOf(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.ManifestationOf
 
ManifestationOf_Type - Class in org.apache.ctakes.typesystem.type.relation
A UMLS relation between clinical elements.
ManifestationOf_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ManifestationOf_Type
initialize variables to correspond with Cas Type and Features
mapByAddress - Variable in class org.apache.ctakes.assertion.medfacts.CasIndexer
 
mapI2B2AssertionValueToCtakes(String, IdentifiedAnnotation) - Static method in class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine
 
Mapper - Class in org.apache.ctakes.relationextractor.cr
Map various category names to their ctakes integer id.
Mapper() - Constructor for class org.apache.ctakes.relationextractor.cr.Mapper
 
Markable - Class in org.apache.ctakes.coreference.type
Updated by JCasGen Tue Apr 09 11:42:44 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml
Markable() - Constructor for class org.apache.ctakes.coreference.type.Markable
Never called.
Markable(int, TOP_Type) - Constructor for class org.apache.ctakes.coreference.type.Markable
Internal - constructor used by generator
Markable(JCas) - Constructor for class org.apache.ctakes.coreference.type.Markable
 
Markable(JCas, int, int) - Constructor for class org.apache.ctakes.coreference.type.Markable
 
Markable_Type - Class in org.apache.ctakes.coreference.type
Updated by JCasGen Tue Apr 09 11:42:44 EDT 2013
Markable_Type(JCas, Type) - Constructor for class org.apache.ctakes.coreference.type.Markable_Type
initialize variables to correspond with Cas Type and Features
MarkableDepUtils - Class in org.apache.ctakes.coreference.util
 
MarkableDepUtils() - Constructor for class org.apache.ctakes.coreference.util.MarkableDepUtils
 
markableNode(JCas, int, int, TreebankNode) - Static method in class org.apache.ctakes.coreference.util.MarkableDepUtils
 
markableNode(JCas, int, int) - Static method in class org.apache.ctakes.coreference.util.MarkableTreeUtils
 
MarkablePair - Class in org.apache.ctakes.coreference.type
Updated by JCasGen Tue Apr 09 11:42:44 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml
MarkablePair() - Constructor for class org.apache.ctakes.coreference.type.MarkablePair
Never called.
MarkablePair(int, TOP_Type) - Constructor for class org.apache.ctakes.coreference.type.MarkablePair
Internal - constructor used by generator
MarkablePair(JCas) - Constructor for class org.apache.ctakes.coreference.type.MarkablePair
 
MarkablePair_Type - Class in org.apache.ctakes.coreference.type
Updated by JCasGen Tue Apr 09 11:42:44 EDT 2013
MarkablePair_Type(JCas, Type) - Constructor for class org.apache.ctakes.coreference.type.MarkablePair_Type
initialize variables to correspond with Cas Type and Features
MarkablePairSet - Class in org.apache.ctakes.coreference.type
Updated by JCasGen Tue Apr 09 11:42:44 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml
MarkablePairSet() - Constructor for class org.apache.ctakes.coreference.type.MarkablePairSet
Never called.
MarkablePairSet(int, TOP_Type) - Constructor for class org.apache.ctakes.coreference.type.MarkablePairSet
Internal - constructor used by generator
MarkablePairSet(JCas) - Constructor for class org.apache.ctakes.coreference.type.MarkablePairSet
 
MarkablePairSet(JCas, int, int) - Constructor for class org.apache.ctakes.coreference.type.MarkablePairSet
 
MarkablePairSet_Type - Class in org.apache.ctakes.coreference.type
Updated by JCasGen Tue Apr 09 11:42:44 EDT 2013
MarkablePairSet_Type(JCas, Type) - Constructor for class org.apache.ctakes.coreference.type.MarkablePairSet_Type
initialize variables to correspond with Cas Type and Features
MarkableProb - Class in org.apache.ctakes.coreference.ae
 
MarkableProb(Markable, Double) - Constructor for class org.apache.ctakes.coreference.ae.MarkableProb
 
MarkableTreeUtils - Class in org.apache.ctakes.coreference.util
 
MarkableTreeUtils() - Constructor for class org.apache.ctakes.coreference.util.MarkableTreeUtils
 
mat - Variable in class org.apache.ctakes.sideeffect.util.PatternMatch
 
matcher(CharSequence) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex
 
matches(String) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex
 
matchingType(CEAFType) - Static method in enum org.apache.ctakes.coreference.eval.helpers.MatType
 
MatType - Enum in org.apache.ctakes.coreference.eval.helpers
 
MAX - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken
 
MAX_LEFT_SCOPE_SIZE_PARAM - Static variable in class org.apache.ctakes.necontexts.ContextAnnotator
"MaxLeftScopeSize" is a required, single, integer parameter that specifies the maximum size of the left scope.
MAX_RIGHT_SCOPE_SIZE_PARAM - Static variable in class org.apache.ctakes.necontexts.ContextAnnotator
"MaxRightScopeSize" is a required, single, integer parameter that specifies the maximum size of the right scope.
MaxentModelResource - Interface in org.apache.ctakes.core.resource
OpenNLP Maxent Model resource.
MaxentParserWrapper - Class in org.apache.ctakes.constituency.parser
 
MaxentParserWrapper(String) - Constructor for class org.apache.ctakes.constituency.parser.MaxentParserWrapper
 
MAXIMUM_STATUS - Static variable in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement
 
MD_KEY_ADMIT_DATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_CUSTOMER_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_DISCHARGE_DATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_DOC_CONFIDENTIAL_IND - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_DOC_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_DOC_LINK_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_DOC_REVISION_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_DOC_STATUS_CODE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_EVENT_TYPE_CODE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_FACILITY_CODE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_HISTORY_SECTION - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_LOCATION - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_MINUTES_COUNSELING - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_NOTE_DATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_PATIENT_CITY - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_PATIENT_CNT - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_PATIENT_STATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_PATIENT_STREET_ADDR - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_PATIENT_ZIP - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_PROVIDER2_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_PROVIDER_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_PT_BILLING_CODE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_PT_BIRTH_DATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_PT_BMI - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_PT_BSA - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_PT_GENDER - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_PT_HEAD_CIRCUMFERENCE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_PT_HEIGHT - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_PT_RESPIRATORY_RATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_PT_TEMPERATURE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_PT_WEIGHT - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_REV_DATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_SERVICE_CODE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_SIGNATURE_DATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_SIGNATURE_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_SITE_CODE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_TOTAL_TIME - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_TRANSCRIBER_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MD_KEY_TRANSCRIPTION_DATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
MeasurementAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.MeasurementAnnotation Updated by JCasGen Tue Apr 09 11:44:44 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-pad-term-spotter/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml
MeasurementAnnotation() - Constructor for class org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
Never called.
MeasurementAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
Internal - constructor used by generator
MeasurementAnnotation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
 
MeasurementAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
 
MeasurementAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.MeasurementAnnotation Updated by JCasGen Tue Apr 09 11:44:44 EDT 2013
MeasurementAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation_Type
initialize variables to correspond with Cas Type and Features
MeasurementFSM - Class in org.apache.ctakes.core.fsm.machine
Uses one or more finite state machines to detect measurements in the given input of tokens.
MeasurementFSM() - Constructor for class org.apache.ctakes.core.fsm.machine.MeasurementFSM
Constructor
MeasurementToken - Class in org.apache.ctakes.core.fsm.output
 
MeasurementToken(int, int) - Constructor for class org.apache.ctakes.core.fsm.output.MeasurementToken
 
MED_STATUS_CHANGE_DECREASE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
 
MED_STATUS_CHANGE_DECREASEFROM - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
 
MED_STATUS_CHANGE_INCREASE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
 
MED_STATUS_CHANGE_INCREASEFROM - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
 
MED_STATUS_CHANGE_MAX - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
 
MED_STATUS_CHANGE_NOCHANGE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
 
MED_STATUS_CHANGE_OTHER - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
 
MED_STATUS_CHANGE_START - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
 
MED_STATUS_CHANGE_STOP - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
 
MED_STATUS_CHANGE_SUM - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
 
Medication - Class in org.apache.ctakes.typesystem.type.refsem
This is an Event from the UMLS semantic group of Chemicals and Drugs, pruned by RxNORM source.
Medication() - Constructor for class org.apache.ctakes.typesystem.type.refsem.Medication
Never called.
Medication(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Medication
Internal - constructor used by generator
Medication(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Medication
 
Medication_Type - Class in org.apache.ctakes.typesystem.type.refsem
This is an Event from the UMLS semantic group of Chemicals and Drugs, pruned by RxNORM source.
Medication_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Medication_Type
initialize variables to correspond with Cas Type and Features
MedicationDosage - Class in org.apache.ctakes.typesystem.type.refsem
Dosage indicates how much of a prescribed drug should be taken.
MedicationDosage() - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationDosage
Never called.
MedicationDosage(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationDosage
Internal - constructor used by generator
MedicationDosage(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationDosage
 
MedicationDosage_Type - Class in org.apache.ctakes.typesystem.type.refsem
Dosage indicates how much of a prescribed drug should be taken.
MedicationDosage_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationDosage_Type
initialize variables to correspond with Cas Type and Features
MedicationDuration - Class in org.apache.ctakes.typesystem.type.refsem
The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks" Updated by JCasGen Tue Apr 09 11:44:34 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-pad-term-spotter/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml
MedicationDuration() - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationDuration
Never called.
MedicationDuration(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationDuration
Internal - constructor used by generator
MedicationDuration(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationDuration
 
MedicationDuration_Type - Class in org.apache.ctakes.typesystem.type.refsem
The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks" Updated by JCasGen Tue Apr 09 11:44:34 EDT 2013
MedicationDuration_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationDuration_Type
initialize variables to correspond with Cas Type and Features
MedicationEventMention - Class in org.apache.ctakes.typesystem.type.textsem
A text string (EventMention and therefore IdentifiedAnnotation) that refers to a (Medication) Event.
MedicationEventMention() - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
Never called.
MedicationEventMention(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
Internal - constructor used by generator
MedicationEventMention(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
 
MedicationEventMention(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
 
MedicationEventMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
A text string (EventMention and therefore IdentifiedAnnotation) that refers to a (Medication) Event.
MedicationEventMention_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
initialize variables to correspond with Cas Type and Features
MedicationForm - Class in org.apache.ctakes.typesystem.type.refsem
Form of this medication.
MedicationForm() - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationForm
Never called.
MedicationForm(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationForm
Internal - constructor used by generator
MedicationForm(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationForm
 
MedicationForm_Type - Class in org.apache.ctakes.typesystem.type.refsem
Form of this medication.
MedicationForm_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationForm_Type
initialize variables to correspond with Cas Type and Features
MedicationFrequency - Class in org.apache.ctakes.typesystem.type.refsem
How often a medication should be used.
MedicationFrequency() - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency
Never called.
MedicationFrequency(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency
Internal - constructor used by generator
MedicationFrequency(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency
 
MedicationFrequency_Type - Class in org.apache.ctakes.typesystem.type.refsem
How often a medication should be used.
MedicationFrequency_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency_Type
initialize variables to correspond with Cas Type and Features
MedicationRoute - Class in org.apache.ctakes.typesystem.type.refsem
Means by which the medication was taken or administered.
MedicationRoute() - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationRoute
Never called.
MedicationRoute(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationRoute
Internal - constructor used by generator
MedicationRoute(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationRoute
 
MedicationRoute_Type - Class in org.apache.ctakes.typesystem.type.refsem
Means by which the medication was taken or administered.
MedicationRoute_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationRoute_Type
initialize variables to correspond with Cas Type and Features
MedicationStatusChange - Class in org.apache.ctakes.typesystem.type.refsem
Status refers to the whether the medication is currently being taken or not.
MedicationStatusChange() - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange
Never called.
MedicationStatusChange(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange
Internal - constructor used by generator
MedicationStatusChange(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange
 
MedicationStatusChange_Type - Class in org.apache.ctakes.typesystem.type.refsem
Status refers to the whether the medication is currently being taken or not.
MedicationStatusChange_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange_Type
initialize variables to correspond with Cas Type and Features
MedicationStrength - Class in org.apache.ctakes.typesystem.type.refsem
Strength indicates the strength number and unit of the prescribed drug.
MedicationStrength() - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationStrength
Never called.
MedicationStrength(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationStrength
Internal - constructor used by generator
MedicationStrength(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationStrength
 
MedicationStrength_Type - Class in org.apache.ctakes.typesystem.type.refsem
Strength indicates the strength number and unit of the prescribed drug.
MedicationStrength_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationStrength_Type
initialize variables to correspond with Cas Type and Features
Metadata - Class in org.apache.ctakes.typesystem.type.structured
Structured data that captures information about the document, patient, or context of the clinical text.
Metadata() - Constructor for class org.apache.ctakes.typesystem.type.structured.Metadata
Never called.
Metadata(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.Metadata
Internal - constructor used by generator
Metadata(JCas) - Constructor for class org.apache.ctakes.typesystem.type.structured.Metadata
 
Metadata_Type - Class in org.apache.ctakes.typesystem.type.structured
Structured data that captures information about the document, patient, or context of the clinical text.
Metadata_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.Metadata_Type
initialize variables to correspond with Cas Type and Features
MetaDataHit - Interface in org.apache.ctakes.dictionary.lookup
 
MetaDataHitComparator - Class in org.apache.ctakes.dictionary.lookup
Allows two MetaDataHit objects to be compared based on a specific metadata value that they both contain.
MetaDataHitComparator(String, int, boolean) - Constructor for class org.apache.ctakes.dictionary.lookup.MetaDataHitComparator
Constructor
MetaDataHitConst - Interface in org.apache.ctakes.dictionary.lookup
 
MetaDataPostLookupFilterImpl - Class in org.apache.ctakes.dictionary.lookup.filter
 
MetaDataPostLookupFilterImpl(DictionaryEngine, String[], boolean) - Constructor for class org.apache.ctakes.dictionary.lookup.filter.MetaDataPostLookupFilterImpl
 
MetaHeader - Class in edu.mayo.bmi.lookup.type
Updated by JCasGen Tue Apr 09 11:46:07 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-drug-ner/src/main/resources/org/apache/ctakes/drugner/types/TypeSystem.xml
MetaHeader() - Constructor for class edu.mayo.bmi.lookup.type.MetaHeader
Never called.
MetaHeader(int, TOP_Type) - Constructor for class edu.mayo.bmi.lookup.type.MetaHeader
Internal - constructor used by generator
MetaHeader(JCas) - Constructor for class edu.mayo.bmi.lookup.type.MetaHeader
 
MetaHeader(JCas, int, int) - Constructor for class edu.mayo.bmi.lookup.type.MetaHeader
 
MetaHeader_Type - Class in edu.mayo.bmi.lookup.type
Updated by JCasGen Tue Apr 09 11:46:07 EDT 2013
MetaHeader_Type(JCas, Type) - Constructor for class edu.mayo.bmi.lookup.type.MetaHeader_Type
initialize variables to correspond with Cas Type and Features
metaLookup(String) - Method in class org.apache.ctakes.dictionary.lookup.DictionaryEngine
Gets a collection of MetaDataHits from the Dictionary based on the input text.
MIDDLE_SCOPE - Static variable in class org.apache.ctakes.necontexts.ContextAnnotator
Provides context annotations that are "inside" the focus annotation.
milliDay - Variable in class org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel
 
milliWeek - Variable in class org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel
 
MINUS_OR_HYPHEN - Static variable in class org.apache.ctakes.core.nlp.tokenizer.HyphenatedPTB
 
mipacDevXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
 
mipacqAllXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
 
mipacqEntityMentionRole - Static variable in class org.apache.ctakes.relationextractor.cr.Constants
 
MipacqMarkableCreator - Class in org.apache.ctakes.coreference.ae
 
MipacqMarkableCreator() - Constructor for class org.apache.ctakes.coreference.ae.MipacqMarkableCreator
 
MipacqMarkableExpander - Class in org.apache.ctakes.coreference.ae
 
MipacqMarkableExpander() - Constructor for class org.apache.ctakes.coreference.ae.MipacqMarkableExpander
 
MipacqMarkablePairGenerator - Class in org.apache.ctakes.coreference.ae
 
MipacqMarkablePairGenerator() - Constructor for class org.apache.ctakes.coreference.ae.MipacqMarkablePairGenerator
 
mipacqModifierRole - Static variable in class org.apache.ctakes.relationextractor.cr.Constants
 
MipacqSvmChainCreator - Class in org.apache.ctakes.coreference.ae
 
MipacqSvmChainCreator() - Constructor for class org.apache.ctakes.coreference.ae.MipacqSvmChainCreator
 
mipacqTestXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
 
mipacqTrainXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
 
modalAdj - Variable in class org.apache.ctakes.coreference.ae.MipacqMarkableCreator
 
model - Variable in class org.apache.ctakes.sideeffect.ae.SESentenceClassifierAnnotator
 
model - Variable in class org.apache.ctakes.smokingstatus.ae.PcsClassifierAnnotator_libsvm
 
modelFile - Variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearParserDescriptors.Options
 
modelOutputDirectory - Variable in class org.apache.ctakes.assertion.medfacts.cleartk.TrainAssertionModel
 
modelsDirectory - Variable in class org.apache.ctakes.assertion.eval.AssertionEvalBasedOnModifier.Options
 
Modifier - Class in org.apache.ctakes.typesystem.type.textsem
A text string (IdentifiedAnnotation) that refers to an Attribute.
Modifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.Modifier
Never called.
Modifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.Modifier
Internal - constructor used by generator
Modifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.Modifier
 
Modifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.Modifier
 
Modifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
A text string (IdentifiedAnnotation) that refers to an Attribute.
Modifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.Modifier_Type
initialize variables to correspond with Cas Type and Features
MODIFIER_TYPE_ID_COURSE_CLASS - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
 
MODIFIER_TYPE_ID_LAB_INTERPRETATION_INDICATOR - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
 
MODIFIER_TYPE_ID_SEVERITY_CLASS - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
 
MODIFIER_TYPE_ID_UNKNOWN - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
 
modifierClasses - Static variable in class org.apache.ctakes.relationextractor.cr.Constants
 
ModifierExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae
 
ModifierExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.ModifierExtractorAnnotator
 
ModifierExtractorEvaluation - Class in org.apache.ctakes.relationextractor.eval
 
ModifierExtractorEvaluation(File, String...) - Constructor for class org.apache.ctakes.relationextractor.eval.ModifierExtractorEvaluation
 
ModifierExtractorEvaluation.OnlyGoldModifiers - Class in org.apache.ctakes.relationextractor.eval
Class that copies the manual Modifier annotations to the default CAS.
ModifierExtractorEvaluation.OnlyGoldModifiers() - Constructor for class org.apache.ctakes.relationextractor.eval.ModifierExtractorEvaluation.OnlyGoldModifiers
 
ModifierExtractorEvaluation.Options - Class in org.apache.ctakes.relationextractor.eval
 
ModifierExtractorEvaluation.Options() - Constructor for class org.apache.ctakes.relationextractor.eval.ModifierExtractorEvaluation.Options
 
modify(String) - Method in class org.apache.ctakes.core.ci.HyphenTextModifierImpl
 
modify(String) - Method in interface org.apache.ctakes.core.ci.TextModifier
Generates modifications for the specified text.
MONTHLY - Static variable in class org.apache.ctakes.drugner.elements.FrequencyUnitElement
 
MultiTokenWordLenToken1 - Static variable in class org.apache.ctakes.core.nlp.tokenizer.ContractionsPTB
 
MultiTokenWordLenToken1 - Static variable in class org.apache.ctakes.core.nlp.tokenizer.HyphenatedPTB
 
MultiTokenWordLenToken2 - Static variable in class org.apache.ctakes.core.nlp.tokenizer.ContractionsPTB
 
MultiTokenWordLenToken2 - Static variable in class org.apache.ctakes.core.nlp.tokenizer.HyphenatedPTB
 
MultiTokenWordLenToken3 - Static variable in class org.apache.ctakes.core.nlp.tokenizer.ContractionsPTB
 
MultiTokenWords - Static variable in class org.apache.ctakes.core.nlp.tokenizer.ContractionsPTB
 
MultiTokenWords - Static variable in class org.apache.ctakes.core.nlp.tokenizer.HyphenatedPTB
 
MultiTokenWordsLookup - Static variable in class org.apache.ctakes.core.nlp.tokenizer.ContractionsPTB
 
MultiTokenWordsLookup - Static variable in class org.apache.ctakes.core.nlp.tokenizer.HyphenatedPTB
 

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