A B C D E F G H I J K L M N O P Q R S T U V W X

L

L_POS_DELIM - Static variable in class org.apache.ctakes.dependency.parser.util.Delim

L_REL_DELIM - Static variable in class org.apache.ctakes.dependency.parser.util.Delim

L_TOK_DELIM - Static variable in class org.apache.ctakes.dependency.parser.util.Delim

Lab - Class in org.apache.ctakes.typesystem.type.refsem

This is an Event from the UMLS semantic group of Laboratory Procedures.

Lab() - Constructor for class org.apache.ctakes.typesystem.type.refsem.Lab

Never called.

Lab(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Lab

Internal - constructor used by generator

Lab(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Lab

Lab_Type - Class in org.apache.ctakes.typesystem.type.refsem

This is an Event from the UMLS semantic group of Laboratory Procedures.

Lab_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Lab_Type

initialize variables to correspond with Cas Type and Features

LabDeltaFlag - Class in org.apache.ctakes.typesystem.type.refsem

An indicator to warn that the laboratory test result has changed significantly from the previous identical laboratory test result.

LabDeltaFlag() - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag

Never called.

LabDeltaFlag(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag

Internal - constructor used by generator

LabDeltaFlag(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag

LabDeltaFlag_Type - Class in org.apache.ctakes.typesystem.type.refsem

An indicator to warn that the laboratory test result has changed significantly from the previous identical laboratory test result.

LabDeltaFlag_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag_Type

initialize variables to correspond with Cas Type and Features

LabReferenceRange - Class in org.apache.ctakes.typesystem.type.refsem

Holds a narrative (i.e.

LabReferenceRange() - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange

Never called.

LabReferenceRange(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange

Internal - constructor used by generator

LabReferenceRange(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange

LabReferenceRange_Type - Class in org.apache.ctakes.typesystem.type.refsem

Holds a narrative (i.e.

LabReferenceRange_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange_Type

initialize variables to correspond with Cas Type and Features

LabValue - Class in org.apache.ctakes.typesystem.type.refsem

Quantitative results of a laboratory, with number and unit.

LabValue() - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabValue

Never called.

LabValue(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabValue

Internal - constructor used by generator

LabValue(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabValue

LabValue_Type - Class in org.apache.ctakes.typesystem.type.refsem

Quantitative results of a laboratory, with number and unit.

LabValue_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabValue_Type

initialize variables to correspond with Cas Type and Features

lambda - Static variable in class org.apache.ctakes.constituency.parser.treekernel.TreeKernel

lambdaSquared - Static variable in class org.apache.ctakes.constituency.parser.treekernel.TreeKernel

LEFT_SCOPE - Static variable in class org.apache.ctakes.necontexts.ContextAnnotator

leftScopeSize - Variable in class org.apache.ctakes.necontexts.ContextAnnotator

LemAssigner - Class in org.apache.ctakes.dependency.parser.ae

LemAssigner() - Constructor for class org.apache.ctakes.dependency.parser.ae.LemAssigner

Lemma - Class in org.apache.ctakes.typesystem.type.syntax

Stores a lemma (canonical form of a token).

Lemma() - Constructor for class org.apache.ctakes.typesystem.type.syntax.Lemma

Never called.

Lemma(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.Lemma

Internal - constructor used by generator

Lemma(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.Lemma

Lemma_Type - Class in org.apache.ctakes.typesystem.type.syntax

Stores a lemma (canonical form of a token).

Lemma_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.Lemma_Type

initialize variables to correspond with Cas Type and Features

lemmatizer - Variable in class org.apache.ctakes.dependency.parser.ae.ClearParserDependencyParserAE

lemmatizer - Variable in class org.apache.ctakes.dependency.parser.ae.ClearParserSemanticRoleLabelerAE

lemmatizerDataFile - Variable in class org.apache.ctakes.dependency.parser.ae.ClearParserDependencyParserAE

lemmatizerDataFile - Variable in class org.apache.ctakes.dependency.parser.ae.ClearParserSemanticRoleLabelerAE

length - Variable in class org.apache.ctakes.coreference.eval.helpers.Span

length() - Method in class org.apache.ctakes.coreference.eval.helpers.Span

lenIfHyphenatedSuffix(String, int) - Static method in class org.apache.ctakes.core.nlp.tokenizer.HyphenatedPTB

lenOfFirstTokenInContraction(String) - Static method in class org.apache.ctakes.core.nlp.tokenizer.ContractionsPTB

lenOfFirstTokenInContraction(String) - Static method in class org.apache.ctakes.core.nlp.tokenizer.HyphenatedPTB

lenOfSecondTokenInContraction(String) - Static method in class org.apache.ctakes.core.nlp.tokenizer.ContractionsPTB

lenOfThirdTokenInContraction(String) - Static method in class org.apache.ctakes.core.nlp.tokenizer.ContractionsPTB

lettersAfterApostropheForMiddleOfContraction - Static variable in class org.apache.ctakes.core.nlp.tokenizer.ContractionsPTB

lettersAfterApostropheForMiddleOfContraction - Static variable in class org.apache.ctakes.core.nlp.tokenizer.HyphenatedPTB

LF - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotatorPTB

LF - Static variable in class org.apache.ctakes.core.sentence.SentenceSpan

line - Variable in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader

line - Variable in class org.apache.ctakes.postagger.OpenNLPPOSCollectionReader

LinearKernel - Class in org.apache.ctakes.utils.kernel

LinearKernel() - Constructor for class org.apache.ctakes.utils.kernel.LinearKernel

LinearKernel(boolean) - Constructor for class org.apache.ctakes.utils.kernel.LinearKernel

LinearKernelMatrixWriter - Class in org.apache.ctakes.coreference.treekernel.training

LinearKernelMatrixWriter(String, String) - Constructor for class org.apache.ctakes.coreference.treekernel.training.LinearKernelMatrixWriter

LinesFromFileCollectionReader - Class in org.apache.ctakes.core.cr

The original code was copied from org.apache.uima.examples.cpe.FileSystemCollectionReader and modified for Mayo use.

LinesFromFileCollectionReader() - Constructor for class org.apache.ctakes.core.cr.LinesFromFileCollectionReader

LinesFromFileStringsResourceImpl - Class in org.apache.ctakes.core.resource

Reads in an array of Strings from a file - each line in the file is a string.

LinesFromFileStringsResourceImpl() - Constructor for class org.apache.ctakes.core.resource.LinesFromFileStringsResourceImpl

LIQUID - Static variable in class org.apache.ctakes.drugner.elements.FormElement

List - Class in org.apache.ctakes.typesystem.type.textspan

A semi-structured text span, containing other Annotations (typically Sentences, other Lists, etc).

List() - Constructor for class org.apache.ctakes.typesystem.type.textspan.List

Never called.

List(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.List

Internal - constructor used by generator

List(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textspan.List

List(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textspan.List

List_Type - Class in org.apache.ctakes.typesystem.type.textspan

A semi-structured text span, containing other Annotations (typically Sentences, other Lists, etc).

List_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.List_Type

initialize variables to correspond with Cas Type and Features

ListFactory - Class in org.apache.ctakes.core.util

Factory to build List of built-in CAS types such as FloatList, IntegerList, StringList, and FSList.

ListFactory() - Constructor for class org.apache.ctakes.core.util.ListFactory

load(DataResource) - Method in class org.apache.ctakes.core.resource.FileResourceImpl

load(DataResource) - Method in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl

load(DataResource) - Method in class org.apache.ctakes.core.resource.LinesFromFileStringsResourceImpl

load(DataResource) - Method in class org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl

Loads a Lucene index for reading.

load(DataResource) - Method in class org.apache.ctakes.core.resource.StringIntegerMapResourceImpl

Loads data from a file.

load(DataResource) - Method in class org.apache.ctakes.core.resource.StringMapResourceImpl

Loads data from a file.

load(DataResource) - Method in class org.apache.ctakes.core.resource.SuffixMaxentModelResourceImpl

Load model from a file.

load(String) - Static method in class org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel

Loads text from a file.

load(DataResource) - Method in class org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl

load(String) - Static method in class org.apache.ctakes.preprocessor.test.TestDriver

Loads text from a file.

LOAD_WORDS_ONLY_PARAM - Static variable in class org.apache.ctakes.postagger.OpenNLPPOSCollectionReader

"LoadWordsOnly" is a optional, single, boolean parameter that determines whether or not the part-of-speech tags associated with each word will be loaded into the CAS or not.

loadDescription(String) - Static method in class org.apache.ctakes.dependency.parser.ae.util.WriteClearParserDescriptors

Simple method to load xml description and return an AnalysisEngineDescription object

loadFeatures(int[], String) - Static method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator

loadStopWords(File) - Method in class org.apache.ctakes.padtermspotter.ae.PADHitAnnotator

loadWordsOnly - Variable in class org.apache.ctakes.postagger.OpenNLPPOSCollectionReader

locateFile(String) - Static method in class org.apache.ctakes.core.resource.FileLocator

LocationOf - Class in org.apache.ctakes.typesystem.type.relation

A UMLS relation between clinical elements.

LocationOf() - Constructor for class org.apache.ctakes.typesystem.type.relation.LocationOf

Never called.

LocationOf(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.LocationOf

Internal - constructor used by generator

LocationOf(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.LocationOf

LocationOf_Type - Class in org.apache.ctakes.typesystem.type.relation

A UMLS relation between clinical elements.

LocationOf_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.LocationOf_Type

initialize variables to correspond with Cas Type and Features

logger - Variable in class org.apache.ctakes.assertion.attributes.GenericAttributeAnalysisEngine

logger - Variable in class org.apache.ctakes.assertion.attributes.SubjectAttributeAnalysisEngine

logger - Variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine

logger - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.TrainAssertionModel

logger - Static variable in class org.apache.ctakes.assertion.medfacts.ConceptConverterAnalysisEngine

logger - Static variable in class org.apache.ctakes.assertion.medfacts.ConceptLookup

logger - Variable in class org.apache.ctakes.assertion.medfacts.i2b2.api.CharacterOffsetToLineTokenConverterCtakesImpl

logger - Variable in class org.apache.ctakes.assertion.medfacts.i2b2.api.SingleDocumentProcessorCtakes

logger - Variable in class org.apache.ctakes.constituency.parser.ae.ConstituencyParser

logger - Variable in class org.apache.ctakes.constituency.parser.MaxentParserWrapper

logger - Variable in class org.apache.ctakes.core.ae.SectionSegmentAnnotator

logger - Variable in class org.apache.ctakes.dependency.parser.ae.ClearParserDependencyParserAE

logger - Variable in class org.apache.ctakes.dependency.parser.ae.ClearParserSemanticRoleLabelerAE

logger - Variable in class org.apache.ctakes.dependency.parser.ae.LemAssigner

logger - Variable in class org.apache.ctakes.dependency.parser.ae.PosAssigner

logger - Variable in class org.apache.ctakes.dependency.parser.util.ClearDependencyUtility

logger - Static variable in class org.apache.ctakes.dependency.parser.util.DependencyUtility

lookup(List, Map) - Method in class org.apache.ctakes.dictionary.lookup.algorithms.DirectPassThroughImpl

lookup(List, Map) - Method in class org.apache.ctakes.dictionary.lookup.algorithms.FirstTokenPermutationImpl

Implementation of algorithm.

lookup(List, Map) - Method in interface org.apache.ctakes.dictionary.lookup.algorithms.LookupAlgorithm

Lookup the given text specified via LookupToken objects.

LookupAlgorithm - Interface in org.apache.ctakes.dictionary.lookup.algorithms

Generic interface to specific lookup algorithm implementations.

LookupAnnotation - Interface in org.apache.ctakes.dictionary.lookup.vo

Value object that models a text annotation.

LookupAnnotationToJCasAdapter - Class in org.apache.ctakes.dictionary.lookup.ae

LookupAnnotationToJCasAdapter(Annotation) - Constructor for class org.apache.ctakes.dictionary.lookup.ae.LookupAnnotationToJCasAdapter

LookupAnnotationToTokAdapter - Class in org.apache.ctakes.dictionary.lookup.vo

LookupAnnotationToTokAdapter(Token) - Constructor for class org.apache.ctakes.dictionary.lookup.vo.LookupAnnotationToTokAdapter

lookupByAddress(int) - Method in class org.apache.ctakes.assertion.medfacts.CasIndexer

lookupConceptType(FSArray) - Static method in class org.apache.ctakes.assertion.medfacts.ConceptLookup

LookupConsumer - Interface in org.apache.ctakes.dictionary.lookup.ae

Defines how to consume the lookup hits produced by the LookupAnnotator.

LookupHit - Class in org.apache.ctakes.dictionary.lookup.vo

Represents a single hit found by a lookup algorithm.

LookupHit(MetaDataHit, int, int) - Constructor for class org.apache.ctakes.dictionary.lookup.vo.LookupHit

LookupInitializer - Interface in org.apache.ctakes.dictionary.lookup.ae

Defines how to initialize the LookupAnnotator.

LookupParseUtilities - Class in org.apache.ctakes.dictionary.lookup.ae

LookupParseUtilities() - Constructor for class org.apache.ctakes.dictionary.lookup.ae.LookupParseUtilities

LookupSpec - Class in org.apache.ctakes.dictionary.lookup.ae

A container for three related classes used to lookup terms in a dictionary and process hits found.

LookupSpec(LookupAlgorithm, LookupInitializer, LookupConsumer) - Constructor for class org.apache.ctakes.dictionary.lookup.ae.LookupSpec

LookupToken - Interface in org.apache.ctakes.dictionary.lookup.vo

This object represents the SMALLEST span of text that could potentially be a lookup hit.

LookupTokenComparator - Class in org.apache.ctakes.dictionary.lookup.vo

Comparator that sorts LookupToken objects by their start and end offsets.

LookupTokenComparator() - Constructor for class org.apache.ctakes.dictionary.lookup.vo.LookupTokenComparator

LookupWindowAnnotation - Class in org.apache.ctakes.typesystem.type.textspan

Defines a window within which dictionary terms may match.

LookupWindowAnnotation() - Constructor for class org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation

Never called.

LookupWindowAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation

Internal - constructor used by generator

LookupWindowAnnotation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation

LookupWindowAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation

LookupWindowAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textspan

Defines a window within which dictionary terms may match.

LookupWindowAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation_Type

initialize variables to correspond with Cas Type and Features

LOTION - Static variable in class org.apache.ctakes.drugner.elements.FormElement

lower_extremity - Static variable in class org.apache.ctakes.padtermspotter.cc.PADOffSetsRecord

lowercaseWords(SimpleTree) - Static method in class org.apache.ctakes.constituency.parser.treekernel.TreeExtractor

LOZENGE - Static variable in class org.apache.ctakes.drugner.elements.FormElement

LST - Class in org.apache.ctakes.typesystem.type.syntax

A list item, usually intra-sentential Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.LST Updated by JCasGen Tue Apr 09 11:44:38 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-pad-term-spotter/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml

LST() - Constructor for class org.apache.ctakes.typesystem.type.syntax.LST

Never called.

LST(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.LST

Internal - constructor used by generator

LST(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.LST

LST(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.LST

LST_Type - Class in org.apache.ctakes.typesystem.type.syntax

A list item, usually intra-sentential Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.LST Updated by JCasGen Tue Apr 09 11:44:39 EDT 2013

LST_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.LST_Type

initialize variables to correspond with Cas Type and Features

LT_KEY_USE_FOR_LOOKUP - Static variable in class org.apache.ctakes.dictionary.lookup.algorithms.FirstTokenPermutationImpl

Key value for LookupToken attribute.

LT_OP - Static variable in interface org.apache.ctakes.dictionary.lookup.MetaDataHitConst

LT_OP - Static variable in class org.apache.ctakes.dictionary.lookup.strtable.FieldConstraintImpl

LTEQ_OP - Static variable in interface org.apache.ctakes.dictionary.lookup.MetaDataHitConst

LTEQ_OP - Static variable in class org.apache.ctakes.dictionary.lookup.strtable.FieldConstraintImpl

LuceneDictionaryImpl - Class in org.apache.ctakes.dictionary.lookup.lucene

LuceneDictionaryImpl(Searcher, String) - Constructor for class org.apache.ctakes.dictionary.lookup.lucene.LuceneDictionaryImpl

Constructor

LuceneDictionaryImpl(Searcher, String, int) - Constructor for class org.apache.ctakes.dictionary.lookup.lucene.LuceneDictionaryImpl

Constructor

LuceneDocumentMetaDataHitImpl - Class in org.apache.ctakes.dictionary.lookup.lucene

LuceneDocumentMetaDataHitImpl(Document) - Constructor for class org.apache.ctakes.dictionary.lookup.lucene.LuceneDocumentMetaDataHitImpl

LuceneIndexReaderResource - Interface in org.apache.ctakes.core.resource

LuceneIndexReaderResourceImpl - Class in org.apache.ctakes.core.resource

Oct 2010 - convert to lucene 3.0.2

LuceneIndexReaderResourceImpl() - Constructor for class org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl

LVG_BASE_TOKEN_ANNOTATOR_PATH - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearParserDescriptors

LvgAnnotator - Class in org.apache.ctakes.lvg.ae

UIMA annotator that uses the UMLS LVG package to find the canonical form of WordTokens.

LvgAnnotator() - Constructor for class org.apache.ctakes.lvg.ae.LvgAnnotator

LvgAnnotator.LemmaLocalClass - Class in org.apache.ctakes.lvg.ae

Basic class to group a lemma word with its various parts of speech.

LvgAnnotator.LemmaLocalClass() - Constructor for class org.apache.ctakes.lvg.ae.LvgAnnotator.LemmaLocalClass

LvgBaseTokenAnnotator - Class in org.apache.ctakes.lvg.ae

UIMA annotator that uses the UMLS LVG package to find the canonical form of BaseTokens.

LvgBaseTokenAnnotator() - Constructor for class org.apache.ctakes.lvg.ae.LvgBaseTokenAnnotator

LvgBaseTokenAnnotator.LemmaLocalClass - Class in org.apache.ctakes.lvg.ae

Basic class to group a lemma word with its various parts of speech.

LvgBaseTokenAnnotator.LemmaLocalClass() - Constructor for class org.apache.ctakes.lvg.ae.LvgBaseTokenAnnotator.LemmaLocalClass

LvgCmdApiResource - Interface in org.apache.ctakes.lvg.resource

LvgCmdApiResourceImpl - Class in org.apache.ctakes.lvg.resource

Loads NLM Lvg and Norm, reading configuration information from a config (properties) file Since the value of the LVG_DIR property in the lvg properties file must be either a hard coded absolute pathname or the value AUTO_MODE, and we want to support installing this project in a directory of the user's choice, we avoid using a hardcoded pathname and choose to use LVG_DIR=AUTO_MODE in the properties file.

LvgCmdApiResourceImpl() - Constructor for class org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl