A B C D E F G H I J K L M N O P Q R S T U V W X

I

iAnnotationType - Variable in class org.apache.ctakes.drugner.ae.impl.NegContextInitializerImpl
 
id - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation
The unique identifier assigned to this annotation by Knowtator
id - Variable in class org.apache.ctakes.preprocessor.SegmentMetaData
 
ID - Static variable in class org.apache.ctakes.utils.xcas_comparison.Const
 
id1 - Variable in class org.apache.ctakes.coreference.eval.helpers.SpanAlignment
 
id1 - Variable in class org.apache.ctakes.relationextractor.knowtator.RelationInfo
 
id2 - Variable in class org.apache.ctakes.coreference.eval.helpers.SpanAlignment
 
id2 - Variable in class org.apache.ctakes.relationextractor.knowtator.RelationInfo
 
IdentifiedAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
Any span of text that has been discovered or flagged for some reason, such as a Named Entity.
IdentifiedAnnotation() - Constructor for class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
Never called.
IdentifiedAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
Internal - constructor used by generator
IdentifiedAnnotation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
 
IdentifiedAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
 
IdentifiedAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
Any span of text that has been discovered or flagged for some reason, such as a Named Entity.
IdentifiedAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
initialize variables to correspond with Cas Type and Features
identifiedAnnotationId - Variable in class org.apache.ctakes.relationextractor.cr.GoldEntityAndRelationReader
 
identifiedAnnotationId - Variable in class org.apache.ctakes.relationextractor.cr.GoldEntityReader
 
ignoredSet - Static variable in class org.apache.ctakes.assertion.medfacts.ConceptLookup
 
IllnessDxIndicator - Class in org.apache.ctakes.padtermspotter.fsm.output
 
IllnessDxIndicator(int, int, int) - Constructor for class org.apache.ctakes.padtermspotter.fsm.output.IllnessDxIndicator
 
IMPLANT - Static variable in class org.apache.ctakes.drugner.elements.FormElement
 
INCREASE - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken
 
INCREASE_STATUS - Static variable in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement
 
INCREASEFROM - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken
 
IndentStartState - Class in org.apache.ctakes.drugner.fsm.states.util
 
IndentStartState(String) - Constructor for class org.apache.ctakes.drugner.fsm.states.util.IndentStartState
 
indexOfRegex(String, Pattern) - Static method in class org.apache.ctakes.drugner.DrugMention
Scan a string for the first occurrence of some regex Pattern.
INHALANT - Static variable in class org.apache.ctakes.drugner.elements.FormElement
 
init(int, int, int, int) - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator.HashableArguments
 
init() - Static method in class org.apache.ctakes.utils.xcas_comparison.Const
 
initializationComplete() - Method in class org.apache.ctakes.postagger.test.CpeTests.StatusCallbackListenerImpl
Called when the initialization is completed.
initialize(UimaContext) - Method in class org.apache.ctakes.assertion.attributes.GenericAttributeAnalysisEngine
 
initialize(UimaContext) - Method in class org.apache.ctakes.assertion.attributes.SubjectAttributeAnalysisEngine
 
initialize(UimaContext) - Method in class org.apache.ctakes.assertion.eval.XMIReader
 
initialize(UimaContext) - Method in class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine
 
initialize() - Method in class org.apache.ctakes.assertion.medfacts.CasIndexer
 
initialize(UimaContext) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
 
initialize(UimaContext) - Method in class org.apache.ctakes.chunker.ae.adjuster.ChunkAdjuster
Performs initialization logic.
initialize(UimaContext) - Method in interface org.apache.ctakes.chunker.ae.ChunkCreator
 
initialize(UimaContext) - Method in class org.apache.ctakes.chunker.ae.Chunker
 
initialize(UimaContext) - Method in class org.apache.ctakes.chunker.ae.DefaultChunkCreator
 
initialize(UimaContext) - Method in class org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator
 
initialize(UimaContext) - Method in class org.apache.ctakes.clinicalpipeline.ae.ExtractionPrepAnnotator
Method invoked by UIMA framework to initialize this annotator
initialize(UimaContext) - Method in class org.apache.ctakes.constituency.parser.ae.ConstituencyParser
 
initialize(UimaContext) - Method in class org.apache.ctakes.constituency.parser.ae.ParserEvaluationAnnotator
 
initialize() - Method in class org.apache.ctakes.constituency.parser.uima.co.ParserTreeWriterConsumer
 
initialize(UimaContext) - Method in class org.apache.ctakes.contexttokenizer.ae.ContextDependentTokenizerAnnotator
 
initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.CopyAnnotator
 
initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.FilterAnnotator
 
initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.OverlapAnnotator
 
initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.SectionSegmentAnnotator
 
initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.SentenceDetector
 
initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.SimpleSegmentAnnotator
 
initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.SimpleSegmentWithTagsAnnotator
 
initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.TokenizerAnnotator
 
initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
 
initialize() - Method in class org.apache.ctakes.core.cc.CasConsumer
Read in configuration parameters
initialize() - Method in class org.apache.ctakes.core.cc.FilesInDirectoryCasConsumer
 
initialize() - Method in class org.apache.ctakes.core.cc.HtmlTableCasConsumer
 
initialize() - Method in class org.apache.ctakes.core.cc.NormalizedFilesInDirectoryCasConsumer
 
initialize() - Method in class org.apache.ctakes.core.cc.TokenFreqCasConsumer
This method opens/creates the file specified by "TokenFreqFile" and initializes the data structure that will keep track of frequency counts.
initialize() - Method in class org.apache.ctakes.core.cc.TokenOffsetsCasConsumer
 
initialize() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads
 
initialize() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader
 
initialize() - Method in class org.apache.ctakes.core.cr.JdbcCollectionReader
 
initialize() - Method in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader
 
initialize(UimaContext) - Method in class org.apache.ctakes.coreference.ae.MipacqMarkableCreator
 
initialize(UimaContext) - Method in class org.apache.ctakes.coreference.ae.MipacqMarkablePairGenerator
 
initialize(UimaContext) - Method in class org.apache.ctakes.coreference.ae.MipacqSvmChainCreator
 
initialize() - Method in class org.apache.ctakes.coreference.cc.ODIEVectorFileWriter
 
initialize(UimaContext) - Method in class org.apache.ctakes.dependency.parser.ae.ClearParserDependencyParserAE
 
initialize(UimaContext) - Method in class org.apache.ctakes.dependency.parser.ae.ClearParserSemanticRoleLabelerAE
 
initialize(UimaContext) - Method in class org.apache.ctakes.dependency.parser.ae.LemAssigner
 
initialize(UimaContext) - Method in class org.apache.ctakes.dependency.parser.ae.PosAssigner
 
initialize(UimaContext) - Method in class org.apache.ctakes.dependency.parser.ae.util.XMIReader
 
initialize() - Method in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader
 
initialize() - Method in class org.apache.ctakes.dependency.parser.DependencyNodeWriter
Read in configuration parameters
initialize(UimaContext) - Method in class org.apache.ctakes.dictionary.lookup.ae.DictionaryLookupAnnotator
 
initialize(UimaContext) - Method in class org.apache.ctakes.dictionary.lookup.ae.UmlsDictionaryLookupAnnotator
 
initialize(UimaContext) - Method in class org.apache.ctakes.drugner.ae.CopyDrugAnnotator
 
initialize(UimaContext) - Method in class org.apache.ctakes.drugner.ae.DrugMentionAnnotator
 
initialize(UimaContext) - Method in class org.apache.ctakes.drugner.ae.impl.NegContextInitializerImpl
 
initialize() - Method in class org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel
 
initialize(UimaContext) - Method in class org.apache.ctakes.lvg.ae.LvgAnnotator
Performs initialization logic.
initialize(UimaContext) - Method in class org.apache.ctakes.lvg.ae.LvgBaseTokenAnnotator
Performs initialization logic.
initialize(UimaContext) - Method in interface org.apache.ctakes.necontexts.ContextAnalyzer
This will be called by the ContextAnnotator during its initialize method
initialize(UimaContext) - Method in class org.apache.ctakes.necontexts.ContextAnalyzerAdapter
 
initialize(UimaContext) - Method in class org.apache.ctakes.necontexts.ContextAnnotator
 
initialize(UimaContext) - Method in class org.apache.ctakes.necontexts.NamedEntityContextAnalyzer
 
initialize(UimaContext) - Method in class org.apache.ctakes.padtermspotter.ae.PADHitAnnotator
 
initialize(UimaContext) - Method in class org.apache.ctakes.padtermspotter.ae.SubSectionAnnotator
 
initialize() - Method in class org.apache.ctakes.padtermspotter.cc.PADOffSetsRecord
 
initialize() - Method in class org.apache.ctakes.padtermspotter.cc.RadialogyTermLookup
 
initialize() - Method in class org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader
 
initialize() - Method in class org.apache.ctakes.postagger.OpenNLPPOSCollectionReader
 
initialize(UimaContext) - Method in class org.apache.ctakes.postagger.POSTagger
 
initialize(UimaContext) - Method in class org.apache.ctakes.preprocessor.ae.CdaCasInitializer
 
initialize() - Method in class org.apache.ctakes.preprocessor.ae.CdaCasInitializer
 
initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.ae.ModifierExtractorAnnotator
 
initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator
 
initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.cr.GoldEntityAndRelationReader
 
initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.cr.GoldEntityReader
 
initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.eval.PreprocessAndWriteXmi.SerializeDocumentToXMI
 
initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.eval.XMIReader
 
initialize(UimaContext) - Method in class org.apache.ctakes.sideeffect.ae.PSESentenceAnnotator
 
initialize(AnnotatorContext) - Method in class org.apache.ctakes.sideeffect.ae.SESentenceClassifierAnnotator
 
initialize(UimaContext) - Method in class org.apache.ctakes.sideeffect.ae.SESentenceFeatureAnnotator
 
initialize(UimaContext) - Method in class org.apache.ctakes.sideeffect.ae.SideEffectAnnotator
 
initialize() - Method in class org.apache.ctakes.sideeffect.cc.SideEffectCasConsumer
 
initialize() - Method in class org.apache.ctakes.sideeffect.cc.SideEffectSentenceCasConsumer
 
initialize(UimaContext) - Method in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries
 
initialize(UimaContext) - Method in class org.apache.ctakes.smokingstatus.ae.KuRuleBasedClassifierAnnotator
 
initialize(UimaContext) - Method in class org.apache.ctakes.smokingstatus.ae.PcsClassifierAnnotator_libsvm
 
initialize(UimaContext) - Method in class org.apache.ctakes.smokingstatus.ae.ResolutionAnnotator
 
initialize(UimaContext) - Method in class org.apache.ctakes.smokingstatus.ae.SentenceAdjuster
Performs initialization logic.
initialize() - Method in class org.apache.ctakes.smokingstatus.cc.RecordResolutionCasConsumer
 
initialize(UimaContext) - Method in class org.apache.ctakes.smokingstatus.context.NamedEntityContextAnalyzer
 
initializeQueue(TreebankNode, TreebankNode) - Static method in class org.apache.ctakes.coreference.util.HobbsTreeNavigator
 
INJECTION - Static variable in class org.apache.ctakes.drugner.elements.FormElement
 
input - Variable in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader
 
input - Variable in class org.apache.ctakes.postagger.OpenNLPPOSCollectionReader
 
INPUT_FILE - Static variable in class org.apache.ctakes.dependency.parser.ae.util.TestClearParserAnalysisEngines
 
INPUT_FORMAT_PARAM - Static variable in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader
"InputFormat" is a optional, single, boolean parameter that determines whether or not the features associated with each word will be loaded into the CAS or not.
inputDirectory - Static variable in class org.apache.ctakes.relationextractor.cr.GoldEntityAndRelationReader
 
inputDirectory - Static variable in class org.apache.ctakes.relationextractor.cr.GoldEntityReader
 
inputDirectory - Variable in class org.apache.ctakes.relationextractor.pipelines.RelationAnnotationAnalysis.Options
 
inputDirectory - Variable in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorPipeline.Options
 
inputFile - Variable in class org.apache.ctakes.dependency.parser.ae.util.TestClearParserAnalysisEngines.Options
 
inputFormat - Variable in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader
 
insertAnnotationNode(JCas, TopTreebankNode, Annotation, String) - Static method in class org.apache.ctakes.constituency.parser.util.AnnotationTreeUtils
 
insertAttribute(String, String) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
Inserts an (attribute, value) pair to this XcasAnnotation.
insertChild(int, SimpleTree) - Method in class org.apache.ctakes.utils.tree.SimpleTree
 
insertIntReference(String, int[]) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
 
insertReference(String, XcasAnnotation) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
 
InstallPearSilently - Class in org.apache.ctakes.utils.build
This class is used to install a pear file locally in a directory chosen by the user and then run the installed AE in CVD.
InstallPearSilently() - Constructor for class org.apache.ctakes.utils.build.InstallPearSilently
 
InstallPearSilently.RunInstallation - Class in org.apache.ctakes.utils.build
The RunInstallation class implements a thread that is used to run the installation.
InstallPearSilently.RunInstallation(File, File) - Constructor for class org.apache.ctakes.utils.build.InstallPearSilently.RunInstallation
Constructor that sets a given input PEAR file and a given installation directory.
InstallPipelineFromPears - Class in org.apache.ctakes.utils.build
This class is used to install a pear file locally in a directory chosen by the user and then run the installed AE in CVD.
InstallPipelineFromPears() - Constructor for class org.apache.ctakes.utils.build.InstallPipelineFromPears
 
INTEGER_TYPE - Static variable in interface org.apache.ctakes.dictionary.lookup.MetaDataHitConst
 
IntegerCondition - Class in org.apache.ctakes.core.fsm.condition
 
IntegerCondition() - Constructor for class org.apache.ctakes.core.fsm.condition.IntegerCondition
 
IntegerRange - Class in org.apache.ctakes.preprocessor
Defines a range of integers.
IntegerRange() - Constructor for class org.apache.ctakes.preprocessor.IntegerRange
 
IntegerRangeCondition - Class in org.apache.ctakes.core.fsm.condition
 
IntegerRangeCondition(int, int) - Constructor for class org.apache.ctakes.core.fsm.condition.IntegerRangeCondition
 
IntegerToken - Interface in org.apache.ctakes.core.fsm.token
 
IntegerTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters
Adapts JCas token annotation to interface expected by the Context Dependent Tokenizer.
IntegerTokenAdapter(NumToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.IntegerTokenAdapter
 
IntegerTokenAdapter - Class in org.apache.ctakes.core.fsm.token.adapter
 
IntegerTokenAdapter(Token) - Constructor for class org.apache.ctakes.core.fsm.token.adapter.IntegerTokenAdapter
 
IntegerValueCondition - Class in org.apache.ctakes.core.fsm.condition
 
IntegerValueCondition(int) - Constructor for class org.apache.ctakes.core.fsm.condition.IntegerValueCondition
 
intersects(int, int, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil
Returns true if one span intersects with the other
INTJ - Class in org.apache.ctakes.typesystem.type.syntax
An interjection Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.INTJ Updated by JCasGen Tue Apr 09 11:44:38 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-pad-term-spotter/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml
INTJ() - Constructor for class org.apache.ctakes.typesystem.type.syntax.INTJ
Never called.
INTJ(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.INTJ
Internal - constructor used by generator
INTJ(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.INTJ
 
INTJ(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.INTJ
 
INTJ_Type - Class in org.apache.ctakes.typesystem.type.syntax
An interjection Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.INTJ Updated by JCasGen Tue Apr 09 11:44:38 EDT 2013
INTJ_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.INTJ_Type
initialize variables to correspond with Cas Type and Features
INTRAARTERIAL - Static variable in class org.apache.ctakes.drugner.elements.RouteElement
 
INTRAARTERIAL - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken
 
INTRACARDIAC - Static variable in class org.apache.ctakes.drugner.elements.RouteElement
 
INTRACARDIAC - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken
 
INTRAMUSCULAR - Static variable in class org.apache.ctakes.drugner.elements.RouteElement
 
INTRAMUSCULAR - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken
 
INTRAPERITONEAL - Static variable in class org.apache.ctakes.drugner.elements.RouteElement
 
INTRAPERITONEAL - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken
 
INTRATHECAL - Static variable in class org.apache.ctakes.drugner.elements.RouteElement
 
INTRATHECAL - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken
 
INTRAVENOUS - Static variable in class org.apache.ctakes.drugner.elements.RouteElement
 
INTRAVENOUS - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken
 
isAcceptableBreak(String, int, int) - Method in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes
Allows subclasses to check an overzealous (read: poorly trained) model from flagging obvious non-breaks as breaks based on some boolean determination of a break's acceptability.
isAlphabetLetter(char) - Method in class org.apache.ctakes.core.nlp.tokenizer.Tokenizer
 
isAnnotationPresentInSpan(JCas, int, int, int) - Static method in class org.apache.ctakes.core.util.FSUtil
returns a true if the annotation type is present in the span
isBoundary(Annotation, int) - Method in interface org.apache.ctakes.necontexts.ContextAnalyzer
This method is called by the ContextAnnotator.
isBoundary(Annotation, int) - Method in class org.apache.ctakes.necontexts.ContextAnalyzerAdapter
 
isBoundary(Annotation, int) - Method in class org.apache.ctakes.necontexts.NamedEntityContextAnalyzer
 
isBoundary(Annotation, int) - Method in class org.apache.ctakes.smokingstatus.context.NamedEntityContextAnalyzer
 
isCommonNode(ConllDependencyNode) - Method in class org.apache.ctakes.dependency.parser.util.DependencyPath
 
isConstrained(String, String) - Method in interface org.apache.ctakes.dictionary.lookup.strtable.FieldConstraint
 
isConstrained(String, String) - Method in class org.apache.ctakes.dictionary.lookup.strtable.FieldConstraintImpl
 
isContractionThatStartsWithApostrophe(int, String) - Static method in class org.apache.ctakes.core.nlp.tokenizer.ContractionsPTB
 
isContractionThatStartsWithApostrophe(int, String) - Static method in class org.apache.ctakes.core.nlp.tokenizer.HyphenatedPTB
 
isDefinite(String) - Static method in class org.apache.ctakes.coreference.util.AttributeCalculator
 
isDemonstrative(String) - Static method in class org.apache.ctakes.coreference.util.AttributeCalculator
 
isDistantBetween(int, int) - Method in class org.apache.ctakes.sideeffect.util.PatternMatch
Return true if exist other than "and" "or" "," (ignoring DRUG and PSE) in input.substring(begin, end)
isDrugBetween(int, int) - Method in class org.apache.ctakes.sideeffect.util.PatternMatch
Return true if finds "DRUG" in input.substring(begin, end)
isDrugBetween(int, int, int[]) - Method in class org.apache.ctakes.sideeffect.util.PatternMatch
Return true if finds "DRUG" in input.substring(begin, end) and assign offsets of DRUG to span
isDrugBetween(JCas, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil
Return true if a drug is between begin and end
isGoldPair(Annotation, Annotation) - Method in class org.apache.ctakes.coreference.util.GoldStandardLabeler
 
isInstanceOf(String, Object) - Static method in class org.apache.ctakes.padtermspotter.util.JCasUtil
 
isInteger() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
 
isInUpperCaseStringLine(JCas, IdentifiedAnnotation) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil
Return true if the given NE belongs to the line consisting of a upper-cased string without " - "
isNumber(String) - Static method in class org.apache.ctakes.core.nlp.tokenizer.Tokenizer
Applies number rules to the given token.
isPronominal(Markable) - Static method in class org.apache.ctakes.coreference.util.AttributeCalculator
 
isPronoun(Markable) - Static method in class org.apache.ctakes.coreference.util.AttributeCalculator
 
isPseBetween(int, int) - Method in class org.apache.ctakes.sideeffect.util.PatternMatch
Return true if finds "PSE" in input.substring(begin, end)
isPseBetween(int, int, int[]) - Method in class org.apache.ctakes.sideeffect.util.PatternMatch
Return true if finds "PSE" in input.substring(begin, end) and assign offsets of PSE to span
isPSEBetween(JCas, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil
Return true if a sign/symptom or disease/disorder is between begin and end
isPunctuation(char) - Static method in class org.apache.ctakes.core.nlp.tokenizer.TokenizerHelper
 
isSpanInSameLine(JCas, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil
Return true if the given offsets are in the same line
isUpperCaseString(String) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil
 
isValidUMLSUser(String, String, String, String) - Static method in class org.apache.ctakes.dictionary.lookup.ae.UmlsDictionaryLookupAnnotator
 
iv_appendWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DurationFSM
 
iv_begin - Variable in class org.apache.ctakes.smokingstatus.util.ClassifiableEntry
 
iv_changeWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
 
iv_classification - Variable in class org.apache.ctakes.smokingstatus.util.ClassifiableEntry
 
iv_classification - Variable in class org.apache.ctakes.smokingstatus.util.TruthValue
 
iv_combinedSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DurationFSM
 
iv_currentIndex - Variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader
 
iv_currentIndex - Variable in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader
 
iv_currentIndex - Variable in class org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader
 
iv_dailySuffixSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_dailyWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_delimeter - Variable in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader
 
iv_delimeter - Variable in class org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader
 
iv_eightTimesPerDayWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_end - Variable in class org.apache.ctakes.smokingstatus.util.ClassifiableEntry
 
iv_everyOtherDayWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_everyOtherHourWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_files - Variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader
 
iv_firstDecreaseDualWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
 
iv_firstIncreaseDualWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
 
iv_firstMaxDualWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
 
iv_firstNoChangeDualWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
 
iv_firstStartDualWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
 
iv_firstStopDualWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
 
iv_fiveTimesPerDayWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_fourTimesPerDayWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_frequencySet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyFSM
 
iv_frequencySet - Variable in class org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM
 
iv_fullTextSet - Variable in class org.apache.ctakes.core.fsm.machine.MeasurementFSM
 
iv_fullTextSet - Variable in class org.apache.ctakes.core.fsm.machine.PersonTitleFSM
 
iv_fullTextSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FormFSM
 
iv_fullTextSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.StrengthUnitFSM
 
iv_hourlySuffixSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_hyphenatedSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyFSM
 
iv_hyphenatedSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_hyphenatedSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RangeStrengthFSM
 
iv_hyphenatedSet - Variable in class org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM
 
iv_hyphenDrugSet - Variable in class org.apache.ctakes.drugner.fsm.machines.util.HyphenatedDrugFSM
 
iv_language - Variable in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader
 
iv_language - Variable in class org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader
 
iv_linesFromFile - Variable in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader
 
iv_linesFromFile - Variable in class org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader
 
iv_logger - Static variable in class org.apache.ctakes.drugner.ae.DrugMentionAnnotator
 
iv_logger - Static variable in class org.apache.ctakes.padtermspotter.ae.PADHitAnnotator
 
iv_logger - Static variable in class org.apache.ctakes.padtermspotter.ae.SubSectionAnnotator
 
iv_logger - Static variable in class org.apache.ctakes.padtermspotter.cc.PADOffSetsRecord
 
iv_logger - Static variable in class org.apache.ctakes.padtermspotter.impl.PADLocationConsumerImpl
 
iv_logger - Static variable in class org.apache.ctakes.padtermspotter.impl.PADTermConsumerImpl
 
iv_logger - Variable in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries
 
iv_logger - Variable in class org.apache.ctakes.smokingstatus.ae.ResolutionAnnotator
 
iv_logger - Variable in class org.apache.ctakes.smokingstatus.ae.SentenceAdjuster
 
iv_map - Variable in class org.apache.ctakes.core.resource.StringIntegerMapResourceImpl
 
iv_map - Variable in class org.apache.ctakes.core.resource.StringMapResourceImpl
 
iv_middleNumericTermSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DurationFSM
 
iv_middleTermSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyFSM
 
iv_middleTermSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM
 
iv_middleTermSet - Variable in class org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM
 
iv_monthlySuffixSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_multiThenWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
 
iv_noChangeWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
 
iv_numberTextSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.StrengthFSM
 
iv_oneOfTwoTextSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.StrengthUnitFSM
 
iv_outputDirectory - Variable in class org.apache.ctakes.core.cc.FilesInDirectoryCasConsumer
 
iv_outputDirectory - Variable in class org.apache.ctakes.core.cc.NormalizedFilesInDirectoryCasConsumer
 
iv_outputDirectory - Variable in class org.apache.ctakes.core.cc.TokenOffsetsCasConsumer
 
iv_outputDirectory - Variable in class org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel
 
iv_perDayWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_periodSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DurationFSM
 
iv_periodSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyFSM
 
iv_periodSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_periodSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM
 
iv_periodSet - Variable in class org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM
 
iv_perWeekWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_postEightWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_postFourWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_postSixWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_prnWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_props - Variable in class org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl
 
iv_rangeSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RangeStrengthFSM
 
iv_recordID - Variable in class org.apache.ctakes.smokingstatus.util.ClassifiableEntry
 
iv_secondDualFromWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
 
iv_secondDualWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
 
iv_secondMaxDualWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
 
iv_secondOffDualWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
 
iv_sentenceList - Variable in class org.apache.ctakes.smokingstatus.util.TruthValue
 
iv_shortTextSet - Variable in class org.apache.ctakes.core.fsm.machine.MeasurementFSM
 
iv_singleChangeWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
 
iv_singleDecreaseWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
 
iv_singleIncreaseWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
 
iv_singleInjectWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM
 
iv_singleMaxWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
 
iv_singleNoChangeWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
 
iv_singleOralWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM
 
iv_singleRectalWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM
 
iv_singleStartWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
 
iv_singleStopWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
 
iv_singleSumWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
 
iv_singleTopicalWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM
 
iv_singleWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_singleWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM
 
iv_sixTimesPerDayWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_soloTextSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DosagesFSM
 
iv_specifiedGastricWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM
 
iv_specifiedInjectWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM
 
iv_specifiedOralWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM
 
iv_specifiedPatchesWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM
 
iv_specifiedWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DurationFSM
 
iv_specifiedWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM
 
iv_text - Variable in class org.apache.ctakes.smokingstatus.util.ClassifiableEntry
 
iv_textDenominatorSet - Variable in class org.apache.ctakes.core.fsm.machine.FractionFSM
 
iv_textDenominatorSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FractionStrengthFSM
 
iv_textNumberSet - Variable in class org.apache.ctakes.core.fsm.machine.MeasurementFSM
 
iv_textNumberSet - Variable in class org.apache.ctakes.core.fsm.machine.RangeFSM
 
iv_textNumberSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.DosagesFSM
 
iv_textNumberSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.RangeStrengthFSM
 
iv_textNumeratorSet - Variable in class org.apache.ctakes.core.fsm.machine.FractionFSM
 
iv_textNumeratorSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FractionStrengthFSM
 
iv_textPrefixSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_textPrefixSet - Variable in class org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM
 
iv_textSuffixSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_textSuffixSet - Variable in class org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM
 
iv_textSuffixSet - Variable in class org.apache.ctakes.drugner.fsm.machines.util.SuffixStrengthFSM
 
iv_threeTimesADayWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_twiceADayWordSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_twoOfTwoTextSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.StrengthUnitFSM
 
iv_type - Variable in class org.apache.ctakes.preprocessor.Annotation
 
iv_weeklySuffixSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 
iv_yearlySuffixSet - Variable in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
 

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