A B C D E F G H I J K L M N O P Q R S T U V W X

S

s - Variable in class org.apache.ctakes.coreference.eval.helpers.Span
 
s - Variable in class org.apache.ctakes.coreference.util.AnaphoricityAttributeCalculator
 
s1 - Variable in class org.apache.ctakes.coreference.util.PairAttributeCalculator
 
s2 - Variable in class org.apache.ctakes.coreference.util.PairAttributeCalculator
 
sample() - Method in class org.apache.ctakes.relationextractor.data.CategoricalDistribution
 
satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.CombineCondition
Called to check if the conditional meets the criteria defined by this state.
satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.DayNightWordCondition
 
satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.DecimalCondition
Called to check if the conditional meets the criteria defined by this state.
satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.DecimalRangeCondition
Called to check if the conditional meets the criteria defined by this state.
satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.DecimalValueCondition
Called to check if the conditional meets the criteria defined by this state.
satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.DisjoinCondition
Called to check if the conditional meets the criteria defined by this state.
satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.HourMinuteCondition
 
satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.IntegerCondition
Called to check if the conditional meets the criteria defined by this state.
satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.IntegerRangeCondition
Called to check if the conditional meets the criteria defined by this state.
satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.IntegerValueCondition
Called to check if the conditional meets the criteria defined by this state.
satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.NegateCondition
Called to check if the conditional meets the criteria defined by this state.
satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.NumberCondition
Called to check if the conditional meets the criteria defined by this state.
satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.PunctuationValueCondition
Called to check if the conditional meets the criteria defined by this state.
satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.RangeCondition
 
satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.RomanNumeralCondition
 
satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.SymbolValueCondition
Called to check if the conditional meets the criteria defined by this state.
satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.TextSetCondition
Called to check if the conditional meets the criteria defined by this state.
satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.TextValueCondition
Called to check if the conditional meets the criteria defined by this state.
satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.WordSetCondition
Called to check if the conditional meets the criteria defined by this state.
satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.WordValueCondition
Called to check if the conditional meets the criteria defined by this state.
satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.machine.RomanNumeralFSM.RomanNumeralCondition
 
satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.ContainsSetTextValueCondition
Called to check if the conditional meets the criteria defined by this state.
satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.DecimalStrengthStatusCondition
 
satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.DosageCondition
 
satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.DrugChangeStatusCondition
 
satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.FormCondition
 
satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.FractionCondition
 
satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.FractionStrengthCondition
 
satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.FrequencyUnitCondition
 
satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.RangeDosageCondition
 
satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.RangeStrengthCondition
 
satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.RouteCondition
 
satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.StrengthCondition
 
satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.StrengthUnitCombinedCondition
 
satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.StrengthUnitCondition
 
satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.TimeCondition
 
SBAR - Class in org.apache.ctakes.typesystem.type.syntax
A subordinate clause Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.SBAR Updated by JCasGen Tue Apr 09 11:44:41 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-pad-term-spotter/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml
SBAR() - Constructor for class org.apache.ctakes.typesystem.type.syntax.SBAR
Never called.
SBAR(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SBAR
Internal - constructor used by generator
SBAR(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SBAR
 
SBAR(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SBAR
 
SBAR_Type - Class in org.apache.ctakes.typesystem.type.syntax
A subordinate clause Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.SBAR Updated by JCasGen Tue Apr 09 11:44:41 EDT 2013
SBAR_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SBAR_Type
initialize variables to correspond with Cas Type and Features
SCOPE_ORDER_PARAM - Static variable in class org.apache.ctakes.necontexts.ContextAnnotator
"ScopeOrder" is a required, multiple, string parameter that specifies the order that the scopes should be processed in.
scopes - Variable in class org.apache.ctakes.necontexts.ContextAnnotator
 
score(Span, Span) - Static method in class org.apache.ctakes.coreference.eval.helpers.Span
 
sections - Variable in class org.apache.ctakes.core.ae.SectionSegmentAnnotator
 
SectionSegmentAnnotator - Class in org.apache.ctakes.core.ae
Creates a single segment annotation that spans the entire document.
SectionSegmentAnnotator() - Constructor for class org.apache.ctakes.core.ae.SectionSegmentAnnotator
 
Segment - Class in org.apache.ctakes.typesystem.type.textspan
A section of a clinical text, e.g., Diagnosis, Current Medications, Problem List.
Segment() - Constructor for class org.apache.ctakes.typesystem.type.textspan.Segment
Never called.
Segment(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Segment
Internal - constructor used by generator
Segment(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Segment
 
Segment(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Segment
 
Segment_Type - Class in org.apache.ctakes.typesystem.type.textspan
A section of a clinical text, e.g., Diagnosis, Current Medications, Problem List.
Segment_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Segment_Type
initialize variables to correspond with Cas Type and Features
SegmentMetaData - Class in org.apache.ctakes.preprocessor
MetaData about a segment.
SegmentMetaData() - Constructor for class org.apache.ctakes.preprocessor.SegmentMetaData
 
SELECT_A - Static variable in class org.apache.ctakes.core.ae.OverlapAnnotator.DeleteActionImpl
 
SELECT_A - Static variable in class org.apache.ctakes.core.ae.OverlapAnnotator.ModifyActionImpl
 
SELECT_A_B - Static variable in class org.apache.ctakes.core.ae.OverlapAnnotator.DeleteActionImpl
 
SELECT_B - Static variable in class org.apache.ctakes.core.ae.OverlapAnnotator.DeleteActionImpl
 
SELECT_B - Static variable in class org.apache.ctakes.core.ae.OverlapAnnotator.ModifyActionImpl
 
selectBaseToken(JCas) - Static method in class org.apache.ctakes.coreference.util.AnnotationSelector
 
selectDemonAndRelative(JCas) - Static method in class org.apache.ctakes.coreference.util.AnnotationSelector
 
selectNE(JCas) - Static method in class org.apache.ctakes.coreference.util.AnnotationSelector
 
selectPronoun(JCas, HashSet<String>, HashSet<String>, HashSet<String>, Logger) - Static method in class org.apache.ctakes.coreference.util.AnnotationSelector
 
selectSentence(JCas) - Static method in class org.apache.ctakes.coreference.util.AnnotationSelector
 
selFeats - Static variable in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
 
SemanticArgument - Class in org.apache.ctakes.typesystem.type.textsem
SemanticArguments are used for predicate-argument structures (SemanticRoleRelations).
SemanticArgument() - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticArgument
Never called.
SemanticArgument(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticArgument
Internal - constructor used by generator
SemanticArgument(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticArgument
 
SemanticArgument(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticArgument
 
SemanticArgument_Type - Class in org.apache.ctakes.typesystem.type.textsem
SemanticArguments are used for predicate-argument structures (SemanticRoleRelations).
SemanticArgument_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type
initialize variables to correspond with Cas Type and Features
SemanticRoleRelation - Class in org.apache.ctakes.typesystem.type.textsem
Predicate-argument structure used for semantic role labeling output.
SemanticRoleRelation() - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation
Never called.
SemanticRoleRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation
Internal - constructor used by generator
SemanticRoleRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation
 
SemanticRoleRelation_Type - Class in org.apache.ctakes.typesystem.type.textsem
Predicate-argument structure used for semantic role labeling output.
SemanticRoleRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type
initialize variables to correspond with Cas Type and Features
sentDetect(String) - Method in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes
Detect sentences in a String.
SENTDIST - Static variable in class org.apache.ctakes.coreference.util.CorefConsts
 
Sentence - Class in org.apache.ctakes.typesystem.type.textspan
Sentences may or may not be fully-formed and grammatical.
Sentence() - Constructor for class org.apache.ctakes.typesystem.type.textspan.Sentence
Never called.
Sentence(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Sentence
Internal - constructor used by generator
Sentence(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Sentence
 
Sentence(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Sentence
 
SENTENCE_DETECTOR_PATH - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearParserDescriptors
 
Sentence_Type - Class in org.apache.ctakes.typesystem.type.textspan
Sentences may or may not be fully-formed and grammatical.
Sentence_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Sentence_Type
initialize variables to correspond with Cas Type and Features
SentenceAdjuster - Class in org.apache.ctakes.smokingstatus.ae
UIMA annotator that uses some patterns and some rules about those patterns to adjust certain annotations.
SentenceAdjuster() - Constructor for class org.apache.ctakes.smokingstatus.ae.SentenceAdjuster
 
SentenceDetector - Class in org.apache.ctakes.core.ae
Wraps the OpenNLP sentence detector in a UIMA annotator
SentenceDetector() - Constructor for class org.apache.ctakes.core.ae.SentenceDetector
 
SentenceDetectorCtakes - Class in org.apache.ctakes.core.sentence
A sentence detector for splitting up raw text into sentences.
SentenceDetectorCtakes(MaxentModel, SDContextGenerator, EndOfSentenceScanner) - Constructor for class org.apache.ctakes.core.sentence.SentenceDetectorCtakes
Initializes the current instance.
SentenceSpan - Class in org.apache.ctakes.core.sentence
A span of text and its offsets within some larger text
SentenceSpan(int, int, String) - Constructor for class org.apache.ctakes.core.sentence.SentenceSpan
 
sentPosDetect(String) - Method in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes
Detect the position of the first words of sentences in a String.
SESentence - Class in org.apache.ctakes.sideeffect.type
Updated by JCasGen Tue Apr 09 11:47:21 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-side-effect/src/main/resources/org/apache/ctakes/sideeffect/types/TypeSystem.xml
SESentence() - Constructor for class org.apache.ctakes.sideeffect.type.SESentence
Never called.
SESentence(int, TOP_Type) - Constructor for class org.apache.ctakes.sideeffect.type.SESentence
Internal - constructor used by generator
SESentence(JCas) - Constructor for class org.apache.ctakes.sideeffect.type.SESentence
 
SESentence(JCas, int, int) - Constructor for class org.apache.ctakes.sideeffect.type.SESentence
 
SESentence_Type - Class in org.apache.ctakes.sideeffect.type
Updated by JCasGen Tue Apr 09 11:47:21 EDT 2013
SESentence_Type(JCas, Type) - Constructor for class org.apache.ctakes.sideeffect.type.SESentence_Type
initialize variables to correspond with Cas Type and Features
SESentenceClassifierAnnotator - Class in org.apache.ctakes.sideeffect.ae
Classify side effect sentences and add them to SESentence
SESentenceClassifierAnnotator() - Constructor for class org.apache.ctakes.sideeffect.ae.SESentenceClassifierAnnotator
 
SESentenceFeatureAnnotator - Class in org.apache.ctakes.sideeffect.ae
Extract SE sentence (from PSESentence) features and add them to PSESentenceFeature.
SESentenceFeatureAnnotator() - Constructor for class org.apache.ctakes.sideeffect.ae.SESentenceFeatureAnnotator
 
setAbnormalInterpretation(DegreeOf) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab
setter for abnormalInterpretation - sets
setAbnormalInterpretation(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type
 
setAlleviatingFactor(ElementRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
setter for alleviatingFactor - sets
setAlleviatingFactor(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
 
setAlleviatingFactor(ElementRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
setter for alleviatingFactor - sets
setAlleviatingFactor(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
 
setAnaphor(Markable) - Method in class org.apache.ctakes.coreference.type.MarkablePair
setter for anaphor - sets
setAnaphor(int, int) - Method in class org.apache.ctakes.coreference.type.MarkablePair_Type
 
setAnaphor(Markable) - Method in class org.apache.ctakes.coreference.type.MarkablePairSet
setter for anaphor - sets
setAnaphor(int, int) - Method in class org.apache.ctakes.coreference.type.MarkablePairSet_Type
 
setAnaphoric_prob(double) - Method in class org.apache.ctakes.coreference.type.Markable
setter for anaphoric_prob - sets
setAnaphoric_prob(int, double) - Method in class org.apache.ctakes.coreference.type.Markable_Type
 
setAntecedent(Markable) - Method in class org.apache.ctakes.coreference.type.MarkablePair
setter for antecedent - sets Proposed antecedent
setAntecedent(int, int) - Method in class org.apache.ctakes.coreference.type.MarkablePair_Type
 
setAntecedentList(FSList) - Method in class org.apache.ctakes.coreference.type.MarkablePairSet
setter for antecedentList - sets
setAntecedentList(int, int) - Method in class org.apache.ctakes.coreference.type.MarkablePairSet_Type
 
setArg1(Element) - Method in class org.apache.ctakes.typesystem.type.relation.AttributeRelation
setter for arg1 - sets
setArg1(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.AttributeRelation_Type
 
setArg1(RelationArgument) - Method in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation
setter for arg1 - sets
setArg1(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation_Type
 
setArg1(Element) - Method in class org.apache.ctakes.typesystem.type.relation.ElementRelation
setter for arg1 - sets
setArg1(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.ElementRelation_Type
 
setArg2(Attribute) - Method in class org.apache.ctakes.typesystem.type.relation.AttributeRelation
setter for arg2 - sets
setArg2(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.AttributeRelation_Type
 
setArg2(RelationArgument) - Method in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation
setter for arg2 - sets
setArg2(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation_Type
 
setArg2(Element) - Method in class org.apache.ctakes.typesystem.type.relation.ElementRelation
setter for arg2 - sets
setArg2(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.ElementRelation_Type
 
setArgument(Annotation) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument
setter for argument - sets
setArgument(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument_Type
 
setArgument(SemanticArgument) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation
setter for argument - sets
setArgument(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type
 
setAspect(String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
setter for aspect - sets
setAspect(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
 
setAssertionType(String) - Method in class org.apache.ctakes.assertion.medfacts.types.Assertion
setter for assertionType - sets assertion type -- one of present, absent, possible, conditional, hypothetical, or assocated_with_someone_else
setAssertionType(int, String) - Method in class org.apache.ctakes.assertion.medfacts.types.Assertion_Type
 
setAssociatedConcept(Concept) - Method in class org.apache.ctakes.assertion.medfacts.types.Assertion
setter for associatedConcept - sets
setAssociatedConcept(int, int) - Method in class org.apache.ctakes.assertion.medfacts.types.Assertion_Type
 
setAssociatedSignSymptom(ManifestationOf) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
setter for associatedSignSymptom - sets
setAssociatedSignSymptom(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
 
setAttribute(String) - Method in class org.apache.ctakes.typesystem.type.util.Pair
setter for attribute - sets
setAttribute(int, String) - Method in class org.apache.ctakes.typesystem.type.util.Pair_Type
 
setAttributeName(String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.AttributeValue
setter for attributeName - sets
setAttributeName(int, String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.AttributeValue_Type
 
setAttributeStringValue(String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue
setter for attributeStringValue - sets
setAttributeStringValue(int, String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue_Type
 
setAuthorSpecialty(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
setter for authorSpecialty - sets
setAuthorSpecialty(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
 
setBirthDate(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
setter for birthDate - sets
setBirthDate(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
 
setBodyLaterality(BodyLaterality) - Method in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite
setter for bodyLaterality - sets
setBodyLaterality(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite_Type
 
setBodyLaterality(BodyLaterality) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
setter for bodyLaterality - sets
setBodyLaterality(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
 
setBodyLaterality(BodyLaterality) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
setter for bodyLaterality - sets
setBodyLaterality(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
 
setBodyLaterality(BodyLaterality) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
setter for bodyLaterality - sets
setBodyLaterality(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
 
setBodyLocation(LocationOf) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
setter for bodyLocation - sets
setBodyLocation(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
 
setBodyLocation(LocationOf) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
setter for bodyLocation - sets
setBodyLocation(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
 
setBodyLocation(LocationOf) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
setter for bodyLocation - sets
setBodyLocation(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
 
setBodySide(BodySide) - Method in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite
setter for bodySide - sets
setBodySide(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite_Type
 
setBodySide(BodySide) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
setter for bodySide - sets
setBodySide(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
 
setBodySide(BodySide) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
setter for bodySide - sets
setBodySide(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
 
setBodySide(BodySide) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
setter for bodySide - sets
setBodySide(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
 
setCanonicalForm(String) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken
setter for canonicalForm - sets
setCanonicalForm(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken_Type
 
setCapitalization(int) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken
setter for capitalization - sets
setCapitalization(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken_Type
 
setCaps(byte) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
Sets the caps state of the token.
setCategory(String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
setter for category - sets Type of Event.
setCategory(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
 
setCategory(String) - Method in class org.apache.ctakes.typesystem.type.relation.Relation
setter for category - sets
setCategory(int, String) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
 
setCategory(String) - Method in class org.apache.ctakes.typesystem.type.textsem.Modifier
setter for category - sets
setCategory(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.Modifier_Type
 
setChangeStatus(String) - Method in class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation
setter for changeStatus - sets Indicates the drug change status of 'stop', 'start', 'increase', 'decrease', or 'noChange'.
setChangeStatus(int, String) - Method in class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation_Type
 
setChangeStatusBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for changeStatusBegin - sets
setChangeStatusBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setChangeStatusEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for changeStatusEnd - sets
setChangeStatusEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setChildren(FSArray) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
setter for children - sets
setChildren(int, TreebankNode) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
indexed setter for children - sets an indexed value -
setChildren(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
 
setChildren(int, int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
 
setChunkType(String) - Method in class org.apache.ctakes.typesystem.type.syntax.Chunk
setter for chunkType - sets
setChunkType(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.Chunk_Type
 
setClassification(String) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence
setter for classification - sets Smoking status classification for the given sentence.
setClassification(int, String) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type
 
setClassification(String) - Method in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification
setter for classification - sets represents the document level classification that RecordResolutionAnnotator assigns
setClassification(int, String) - Method in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification_Type
 
setCode(String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept
setter for code - sets
setCode(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type
 
setCodingScheme(String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept
setter for codingScheme - sets
setCodingScheme(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type
 
setCommonNode(ConllDependencyNode) - Method in class org.apache.ctakes.dependency.parser.util.DependencyPath
 
setConceptText(String) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept
setter for conceptText - sets
setConceptText(int, String) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept_Type
 
setConceptType(String) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept
setter for conceptType - sets the concept type -- one of problem, treatment, or test
setConceptType(int, String) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept_Type
 
setConditional(boolean) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
setter for conditional - sets
setConditional(int, boolean) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
 
setConditional(boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
setter for conditional - sets
setConditional(int, boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
 
setConfidence(float) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for confidence - sets The confidence of the annotation.
setConfidence(int, float) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setConfidence(double) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
setter for confidence - sets
setConfidence(int, double) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
 
setConfidence(double) - Method in class org.apache.ctakes.typesystem.type.relation.Relation
setter for confidence - sets
setConfidence(int, double) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
 
setConfidence(float) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
setter for confidence - sets The confidence of the annotation.
setConfidence(int, float) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
 
setConfidenceScoreElement(double, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
 
setConfidenceScoreElement(double, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
 
setContent(String) - Method in class org.apache.ctakes.core.util.DocumentSection
 
setContent(Annotation) - Method in class org.apache.ctakes.coreference.type.Markable
setter for content - sets The markable instance, i.e., a Named Entity, pronoun Token, etc.
setContent(int, int) - Method in class org.apache.ctakes.coreference.type.Markable_Type
 
setContextualAspect(String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
setter for contextualAspect - sets
setContextualAspect(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
 
setContextualModality(String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
setter for contextualModality - sets
setContextualModality(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
 
setContractionTokenLen(int) - Method in class org.apache.ctakes.core.nlp.tokenizer.ContractionResult
 
setCourse(Course) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
setter for course - sets
setCourse(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
 
setCourse(Course) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
setter for course - sets
setCourse(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
 
setCpostag(String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
setter for cpostag - sets
setCpostag(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
 
setCui(String) - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept
setter for cui - sets
setCui(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept_Type
 
setDateValue(String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue
setter for dateValue - sets
setDateValue(int, String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue_Type
 
setDay(String) - Method in class org.apache.ctakes.typesystem.type.refsem.Date
setter for day - sets
setDay(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.Date_Type
 
setDeathDate(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
setter for deathDate - sets
setDeathDate(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
 
setDegree(String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
setter for degree - sets
setDegree(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
 
setDeltaFlag(LabDeltaFlag) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab
setter for deltaFlag - sets
setDeltaFlag(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type
 
setDemographics(Demographics) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata
setter for demographics - sets
setDemographics(int, int) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type
 
setDeprel(String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
setter for deprel - sets
setDeprel(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
 
setDiscoveryTechnique(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
setter for discoveryTechnique - sets
setDiscoveryTechnique(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
 
setDiscoveryTechnique(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation
setter for discoveryTechnique - sets
setDiscoveryTechnique(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
 
setDiscoveryTechnique(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
setter for discoveryTechnique - sets
setDiscoveryTechnique(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
 
setDocTimeRel(String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
setter for docTimeRel - sets
setDocTimeRel(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
 
setDocumentID(String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID
setter for documentID - sets
setDocumentID(int, String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID_Type
 
setDocumentID(String) - Method in class org.apache.ctakes.typesystem.type.structured.DocumentID
setter for documentID - sets
setDocumentID(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.DocumentID_Type
 
setDocumentLocator(Locator) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasProcessor
 
setDocumentStandard(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
setter for documentStandard - sets
setDocumentStandard(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
 
setDosage(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for dosage - sets Dosage refers to how many of each drug the patient is taking.
setDosage(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setDosageBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for dosageBegin - sets
setDosageBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setDosageElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
 
setDosageElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
 
setDosageEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for dosageEnd - sets
setDosageEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setDrug(IdentifiedAnnotation) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation
setter for drug - sets
setDrug(int, int) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation_Type
 
setDrugChangeStatus(String) - Method in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken
 
setDrugChangeStatus(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for drugChangeStatus - sets Status refers to the whether the medication is currently being taken or not.
setDrugChangeStatus(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setDrugChangeStatusElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
 
setDrugChangeStatusElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
 
setDuration(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for duration - sets Duration refers to for how long the patient is expected to take the drug.
setDuration(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setDuration(TemporalRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
setter for duration - sets
setDuration(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
 
setDuration(TemporalRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
setter for duration - sets
setDuration(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
 
setDuration(TemporalRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
setter for duration - sets
setDuration(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
 
setDurationBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for durationBegin - sets
setDurationBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setDurationElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
 
setDurationElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
 
setDurationEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for durationEnd - sets
setDurationEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setEnd(int) - Method in class org.apache.ctakes.core.sentence.SentenceSpan
Set offset of end of this span within the larger text
setEndDate(Date) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
setter for endDate - sets
setEndDate(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
 
setEndDate(Date) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
setter for endDate - sets
setEndDate(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
 
setEndDateElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
 
setEndDateElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
 
setEndLine(int) - Method in class org.apache.ctakes.core.util.DocumentSection
 
setEndOffset(int) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
Sets the end offset.
setEndTime(Time) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
setter for endTime - sets
setEndTime(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
 
setEndTime(Time) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
setter for endTime - sets
setEndTime(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
 
setEndTime(Time) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
setter for endTime - sets
setEndTime(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
 
setEntity(Entity) - Method in class org.apache.ctakes.typesystem.type.textsem.EntityMention
setter for entity - sets
setEntity(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.EntityMention_Type
 
setEvent(Event) - Method in class org.apache.ctakes.typesystem.type.textsem.EventMention
setter for event - sets
setEvent(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.EventMention_Type
 
setExacerbatingFactor(ElementRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
setter for exacerbatingFactor - sets
setExacerbatingFactor(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
 
setExacerbatingFactor(ElementRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
setter for exacerbatingFactor - sets
setExacerbatingFactor(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
 
setExternalId(int) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept
setter for externalId - sets
setExternalId(int, int) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept_Type
 
setFeats(String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
setter for feats - sets
setFeats(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
 
setFeature(TOP) - Method in class org.apache.ctakes.coreference.type.BooleanLabeledFS
setter for feature - sets
setFeature(int, int) - Method in class org.apache.ctakes.coreference.type.BooleanLabeledFS_Type
 
setFeatures(StringArray) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature
setter for features - sets
setFeatures(int, String) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature
indexed setter for features - sets an indexed value -
setFeatures(int, int) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature_Type
 
setFeatures(int, int, String) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature_Type
 
setFirstName(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
setter for firstName - sets
setFirstName(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
 
setFirstNameSoundex(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
setter for firstNameSoundex - sets
setFirstNameSoundex(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
 
setFocusText(String) - Method in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation
setter for FocusText - sets
setFocusText(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation_Type
 
setForm(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for form - sets Form refers to the physical appearance of the drug.
setForm(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setForm(String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
setter for form - sets
setForm(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
 
setFormBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for formBegin - sets
setFormBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setFormElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
 
setFormElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
 
setFormEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for formEnd - sets
setFormEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setFormMethod(int) - Method in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken
 
setFrags(Collection<String>) - Method in class org.apache.ctakes.coreference.util.SvmVectorCreator
 
setFrameSet(String) - Method in class org.apache.ctakes.typesystem.type.textsem.Predicate
setter for frameSet - sets
setFrameSet(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.Predicate_Type
 
setFrequency(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for frequency - sets Frequency refers to how often the patient needs to take the drug.
setFrequency(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setFrequencyBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for frequencyBegin - sets
setFrequencyBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setFrequencyElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
 
setFrequencyElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
 
setFrequencyEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for frequencyEnd - sets
setFrequencyEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setFrequencyUnit(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for frequencyUnit - sets
setFrequencyUnit(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setFrequencyUnitElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
 
setFrequencyUnitElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
 
setFuBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for fuBegin - sets
setFuBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setFuEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for fuEnd - sets
setFuEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setGender(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
setter for gender - sets
setGender(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
 
setGeneric(boolean) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
setter for generic - sets
setGeneric(int, boolean) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
 
setGeneric(boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
setter for generic - sets
setGeneric(int, boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
 
setHead(ConllDependencyNode) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
setter for head - sets
setHead(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
 
setHeadIndex(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
setter for headIndex - sets The head index tracks the index into the word tokens which is the syntactic head of a phrase.
setHeadIndex(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
 
setHitDictionaryValue(String) - Method in class org.apache.ctakes.padtermspotter.type.PADLocation
setter for hitDictionaryValue - sets Value from the Dictionary that was successfully looked up
setHitDictionaryValue(int, String) - Method in class org.apache.ctakes.padtermspotter.type.PADLocation_Type
 
setHitDictionaryValue(String) - Method in class org.apache.ctakes.padtermspotter.type.PADTerm
setter for hitDictionaryValue - sets Value from the Dictionary that was successfully looked up
setHitDictionaryValue(int, String) - Method in class org.apache.ctakes.padtermspotter.type.PADTerm_Type
 
setId(int) - Method in class org.apache.ctakes.coreference.type.Markable
setter for id - sets
setId(int, int) - Method in class org.apache.ctakes.coreference.type.Markable_Type
 
setId(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
setter for id - sets
setId(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
 
setId(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation
setter for id - sets
setId(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
 
setId(int) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument
setter for id - sets
setId(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument_Type
 
setId(int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
setter for id - sets The token's position in the sentence.
setId(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
 
setId(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
setter for id - sets
setId(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
 
setId(String) - Method in class org.apache.ctakes.typesystem.type.textspan.List
setter for id - sets
setId(int, String) - Method in class org.apache.ctakes.typesystem.type.textspan.List_Type
 
setId(String) - Method in class org.apache.ctakes.typesystem.type.textspan.Segment
setter for id - sets
setId(int, String) - Method in class org.apache.ctakes.typesystem.type.textspan.Segment_Type
 
setIndex(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode
setter for index - sets The index of this node in the top node's list of terminals.
setIndex(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode_Type
 
setInputFile(String) - Method in class org.apache.ctakes.smokingstatus.patientLevel.PatientLevelSmokingStatus
 
setIntakeMethod(String) - Method in class org.apache.ctakes.drugner.type.RouteAnnotation
setter for intakeMethod - sets Means by which the drug was taken.
setIntakeMethod(int, String) - Method in class org.apache.ctakes.drugner.type.RouteAnnotation_Type
 
setIsInteger(boolean) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
 
setIsStandAlone(int) - Method in class org.apache.ctakes.padtermspotter.type.PADLocation
setter for isStandAlone - sets Identifies weather this term needs another dictionary hit to be considered as a valid hit.
setIsStandAlone(int, int) - Method in class org.apache.ctakes.padtermspotter.type.PADLocation_Type
 
setIsStandAlone(int) - Method in class org.apache.ctakes.padtermspotter.type.PADTerm
setter for isStandAlone - sets Identifies weather this term needs another dictionary hit to be considered as a valid hit.
setIsStandAlone(int, int) - Method in class org.apache.ctakes.padtermspotter.type.PADTerm_Type
 
setItems(FSList) - Method in class org.apache.ctakes.typesystem.type.textspan.List
setter for items - sets
setItems(int, int) - Method in class org.apache.ctakes.typesystem.type.textspan.List_Type
 
setJcas(JCas) - Method in class org.apache.ctakes.assertion.medfacts.CasIndexer
 
setJcas(JCas) - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.ConstraintConstructor
 
setJcas(JCas) - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.SingleDocumentProcessorCtakes
 
setKey(String) - Method in class org.apache.ctakes.typesystem.type.syntax.Lemma
setter for key - sets
setKey(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.Lemma_Type
 
setLabel(boolean) - Method in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree
setter for label - sets
setLabel(int, boolean) - Method in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree_Type
 
setLabel(boolean) - Method in class org.apache.ctakes.coreference.type.BooleanLabeledFS
setter for label - sets
setLabel(int, boolean) - Method in class org.apache.ctakes.coreference.type.BooleanLabeledFS_Type
 
setLabel(boolean) - Method in class org.apache.ctakes.coreference.type.MarkablePair
setter for label - sets Is this pair coreferent?
setLabel(int, boolean) - Method in class org.apache.ctakes.coreference.type.MarkablePair_Type
 
setLabel(String) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument
setter for label - sets
setLabel(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type
 
setLabValue(LabValue) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab
setter for labValue - sets
setLabValue(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type
 
setLastName(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
setter for lastName - sets
setLastName(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
 
setLastNameSoundex(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
setter for lastNameSoundex - sets
setLastNameSoundex(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
 
setLeaf(boolean) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
setter for leaf - sets
setLeaf(int, boolean) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
 
setLemma(String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
setter for lemma - sets
setLemma(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
 
setLemmaEntries(FSList) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken
setter for lemmaEntries - sets
setLemmaEntries(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken_Type
 
setMaxSizeList(int) - Static method in class org.apache.ctakes.dictionary.lookup.ae.LookupParseUtilities
Set the maximum list size to be returned from a lucene index
setMedicationDosage(MedicationDosage) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
setter for medicationDosage - sets
setMedicationDosage(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
 
setMedicationDosage(MedicationDosage) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
setter for medicationDosage - sets
setMedicationDosage(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
 
setMedicationDuration(MedicationDuration) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
setter for medicationDuration - sets
setMedicationDuration(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
 
setMedicationDuration(MedicationDuration) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
setter for medicationDuration - sets
setMedicationDuration(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
 
setMedicationForm(MedicationForm) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
setter for medicationForm - sets
setMedicationForm(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
 
setMedicationForm(MedicationForm) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
setter for medicationForm - sets
setMedicationForm(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
 
setMedicationFrequency(MedicationFrequency) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
setter for medicationFrequency - sets
setMedicationFrequency(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
 
setMedicationFrequency(MedicationFrequency) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
setter for medicationFrequency - sets
setMedicationFrequency(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
 
setMedicationRoute(MedicationRoute) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
setter for medicationRoute - sets
setMedicationRoute(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
 
setMedicationRoute(MedicationRoute) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
setter for medicationRoute - sets
setMedicationRoute(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
 
setMedicationStatusChange(MedicationStatusChange) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
setter for medicationStatusChange - sets
setMedicationStatusChange(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
 
setMedicationStatusChange(MedicationStatusChange) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
setter for medicationStatusChange - sets
setMedicationStatusChange(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
 
setMedicationStrength(MedicationStrength) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
setter for medicationStrength - sets
setMedicationStrength(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
 
setMedicationStrength(MedicationStrength) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
setter for medicationStrength - sets
setMedicationStrength(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
 
setMembers(FSList) - Method in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelation
setter for members - sets A super-type for relationships between multiple spans of text.
setMembers(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelation_Type
 
setMentions(FSArray) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
setter for mentions - sets
setMentions(int, IdentifiedAnnotation) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
indexed setter for mentions - sets an indexed value -
setMentions(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
 
setMentions(int, int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
 
setMethod(ProcedureMethod) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
setter for method - sets
setMethod(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
 
setMiddleName(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
setter for middleName - sets
setMiddleName(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
 
setMonth(String) - Method in class org.apache.ctakes.typesystem.type.refsem.Date
setter for month - sets
setMonth(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.Date_Type
 
setNodeTags(StringArray) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
setter for nodeTags - sets
setNodeTags(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
indexed setter for nodeTags - sets an indexed value -
setNodeTags(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
 
setNodeTags(int, int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
 
setNodeType(String) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
setter for nodeType - sets
setNodeType(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
 
setNodeValue(String) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
setter for nodeValue - sets
setNodeValue(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
 
setNominalValue(String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue
setter for nominalValue - sets
setNominalValue(int, String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue_Type
 
setNormalizedForm(String) - Method in class org.apache.ctakes.typesystem.type.refsem.Time
setter for normalizedForm - sets
setNormalizedForm(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.Time_Type
 
setNormalizedForm(String) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken
setter for normalizedForm - sets
setNormalizedForm(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken_Type
 
setNormalizedForm(Attribute) - Method in class org.apache.ctakes.typesystem.type.textsem.Modifier
setter for normalizedForm - sets
setNormalizedForm(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.Modifier_Type
 
setNoteSubTypeCode(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
setter for noteSubTypeCode - sets
setNoteSubTypeCode(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
 
setNoteTypeCode(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
setter for noteTypeCode - sets
setNoteTypeCode(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
 
setNumber(String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabValue
setter for number - sets
setNumber(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabValue_Type
 
setNumber(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency
setter for number - sets
setNumber(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency_Type
 
setNumber(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength
setter for number - sets
setNumber(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength_Type
 
setNumericValue(String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NumericAttributeValue
setter for numericValue - sets
setNumericValue(int, String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NumericAttributeValue_Type
 
setNumPosition(byte) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
Sets the position of a number inside a Token.
setNumPosition(int) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken
setter for numPosition - sets
setNumPosition(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken_Type
 
setNumType(int) - Method in class org.apache.ctakes.typesystem.type.syntax.NumToken
setter for numType - sets
setNumType(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.NumToken_Type
 
setObjects(ArrayList<?>) - Static method in class org.apache.ctakes.coreference.treekernel.training.RowFillerThread
 
setOid(String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept
setter for oid - sets
setOid(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type
 
setOntologyConcept(OntologyConcept) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
setter for ontologyConcept - sets
setOntologyConcept(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
 
setOntologyConceptArr(FSArray) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
setter for ontologyConceptArr - sets
setOntologyConceptArr(int, OntologyConcept) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
indexed setter for ontologyConceptArr - sets an indexed value -
setOntologyConceptArr(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
 
setOntologyConceptArr(int, int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
 
setOrdinalInterpretation(DegreeOf) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab
setter for ordinalInterpretation - sets
setOrdinalInterpretation(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type
 
setOriginalEntityExternalId(int) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept
setter for originalEntityExternalId - sets
setOriginalEntityExternalId(int, int) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept_Type
 
setOui(String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept
setter for oui - sets holds the rxnorm unique identifier for a given drug mention.
setOui(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type
 
setOutputFile(String) - Method in class org.apache.ctakes.smokingstatus.patientLevel.PatientLevelSmokingStatus
 
setP1(TOP) - Method in class org.apache.ctakes.coreference.type.Pair
setter for p1 - sets
setP1(int, int) - Method in class org.apache.ctakes.coreference.type.Pair_Type
 
setP2(TOP) - Method in class org.apache.ctakes.coreference.type.Pair
setter for p2 - sets
setP2(int, int) - Method in class org.apache.ctakes.coreference.type.Pair_Type
 
setPairs(FSArray) - Method in class org.apache.ctakes.typesystem.type.util.Pairs
setter for pairs - sets
setPairs(int, Pair) - Method in class org.apache.ctakes.typesystem.type.util.Pairs
indexed setter for pairs - sets an indexed value -
setPairs(int, int) - Method in class org.apache.ctakes.typesystem.type.util.Pairs_Type
 
setPairs(int, int, int) - Method in class org.apache.ctakes.typesystem.type.util.Pairs_Type
 
setParent(TreebankNode) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
setter for parent - sets
setParent(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
 
setParentSectionId(String) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation
setter for parentSectionId - sets The section in which the subsection was found.
setParentSectionId(int, String) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
 
setParentSectionId(String) - Method in class org.apache.ctakes.padtermspotter.type.SubSection
setter for parentSectionId - sets
setParentSectionId(int, String) - Method in class org.apache.ctakes.padtermspotter.type.SubSection_Type
 
setParticipatesIn(FSList) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument
setter for participatesIn - sets
setParticipatesIn(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument_Type
 
setPartOfSpeech(String) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken
setter for partOfSpeech - sets
setPartOfSpeech(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken_Type
 
setPatientID(long) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata
setter for patientID - sets
setPatientID(int, long) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type
 
setPdeprel(String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
setter for pdeprel - sets
setPdeprel(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
 
setPeriod(float) - Method in class org.apache.ctakes.drugner.type.FrequencyUnitAnnotation
setter for period - sets The periodic unit used, e.g day, month, hour, etc.
setPeriod(int, float) - Method in class org.apache.ctakes.drugner.type.FrequencyUnitAnnotation_Type
 
setPermanence(String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
setter for permanence - sets
setPermanence(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
 
setPhead(ConllDependencyNode) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
setter for phead - sets
setPhead(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
 
setPolarity(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
setter for polarity - sets
setPolarity(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
 
setPolarity(int) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
setter for polarity - sets
setPolarity(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
 
setPolarity(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation
setter for polarity - sets
setPolarity(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
 
setPolarity(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
setter for polarity - sets
setPolarity(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
 
setPostag(String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
setter for postag - sets
setPostag(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
 
setPosTag(String) - Method in class org.apache.ctakes.typesystem.type.syntax.Lemma
setter for posTag - sets
setPosTag(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.Lemma_Type
 
setPredicate(Predicate) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation
setter for predicate - sets
setPredicate(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type
 
setPrimaryAssociatedCodeElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
 
setPrimaryAssociatedCodeElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
 
setProcedureDevice(ProcedureDevice) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
setter for procedureDevice - sets
setProcedureDevice(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
 
setProperties(EventProperties) - Method in class org.apache.ctakes.typesystem.type.refsem.Event
setter for properties - sets
setProperties(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Event_Type
 
setProviderID(LongArray) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata
setter for providerID - sets
setProviderID(int, long) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata
indexed setter for providerID - sets an indexed value -
setProviderID(int, int) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type
 
setProviderID(int, int, long) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type
 
setPseSen(PSESentence) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature
setter for pseSen - sets
setPseSen(int, int) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature_Type
 
setReason(FSArray) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for reason - sets
setReason(int, TOP) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
indexed setter for reason - sets an indexed value -
setReason(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setReason(int, int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setRecordID(String) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence
setter for recordID - sets ID of record that this sentence belongs to.
setRecordID(int, String) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type
 
setRecordID(String) - Method in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification
setter for recordID - sets Represents the document record id
setRecordID(int, String) - Method in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification_Type
 
setRecordTextBegin(int) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence
setter for recordTextBegin - sets Begin offset of the sentence relative to the entire record text.
setRecordTextBegin(int, int) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type
 
setRecordTextEnd(int) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence
setter for recordTextEnd - sets End offset of the sentence relative to the entire record text.
setRecordTextEnd(int, int) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type
 
setReferenceRangeNarrative(LabReferenceRange) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab
setter for referenceRangeNarrative - sets
setReferenceRangeNarrative(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type
 
setRelatedTokens(FSArray) - Method in class org.apache.ctakes.padtermspotter.type.PADLocation
setter for relatedTokens - sets identifies the token that this PADTerm spans
setRelatedTokens(int, TOP) - Method in class org.apache.ctakes.padtermspotter.type.PADLocation
indexed setter for relatedTokens - sets an indexed value - identifies the token that this PADTerm spans
setRelatedTokens(int, int) - Method in class org.apache.ctakes.padtermspotter.type.PADLocation_Type
 
setRelatedTokens(int, int, int) - Method in class org.apache.ctakes.padtermspotter.type.PADLocation_Type
 
setRelatedTokens(FSArray) - Method in class org.apache.ctakes.padtermspotter.type.PADTerm
setter for relatedTokens - sets identifies the token that this PADTerm spans
setRelatedTokens(int, TOP) - Method in class org.apache.ctakes.padtermspotter.type.PADTerm
indexed setter for relatedTokens - sets an indexed value - identifies the token that this PADTerm spans
setRelatedTokens(int, int) - Method in class org.apache.ctakes.padtermspotter.type.PADTerm_Type
 
setRelatedTokens(int, int, int) - Method in class org.apache.ctakes.padtermspotter.type.PADTerm_Type
 
setRelation(SemanticRoleRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument
setter for relation - sets
setRelation(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type
 
setRelations(FSList) - Method in class org.apache.ctakes.typesystem.type.textsem.Predicate
setter for relations - sets
setRelations(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.Predicate_Type
 
setRelativeTemporalContext(TemporalRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
setter for relativeTemporalContext - sets
setRelativeTemporalContext(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
 
setRelativeTemporalContext(TemporalRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
setter for relativeTemporalContext - sets
setRelativeTemporalContext(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
 
setRelativeTemporalContext(TemporalRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
setter for relativeTemporalContext - sets
setRelativeTemporalContext(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
 
setRelativeTemporalContext(TemporalRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
setter for relativeTemporalContext - sets
setRelativeTemporalContext(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
 
setRev_date(String) - Method in class edu.mayo.bmi.lookup.type.MetaHeader
setter for rev_date - sets
setRev_date(int, String) - Method in class edu.mayo.bmi.lookup.type.MetaHeader_Type
 
setRole(String) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument
setter for role - sets
setRole(int, String) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument_Type
 
setRoute(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for route - sets Medication route refers to the way that a drug is introduced into the body.
setRoute(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setRouteBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for routeBegin - sets
setRouteBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setRouteElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
 
setRouteElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
 
setRouteEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for routeEnd - sets
setRouteEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setRow(ArrayList<Double>, int) - Method in class org.apache.ctakes.coreference.treekernel.training.RowFillerThread
 
setScope(String) - Method in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation
setter for Scope - sets
setScope(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation_Type
 
setSecondaryAssociatedCodeElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
 
setSecondaryAssociatedCodeElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
 
setSectionName(String) - Method in class org.apache.ctakes.core.util.DocumentSection
 
setSegmentID(String) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
setter for segmentID - sets
setSegmentID(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
 
setSegmentId(String) - Method in class org.apache.ctakes.typesystem.type.textspan.Sentence
setter for segmentId - sets
setSegmentId(int, String) - Method in class org.apache.ctakes.typesystem.type.textspan.Sentence_Type
 
setSentence(SESentence) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation
setter for sentence - sets sentence containing side effect
setSentence(int, int) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation_Type
 
setSentenceID(String) - Method in class org.apache.ctakes.drugner.type.ChunkAnnotation
setter for sentenceID - sets
setSentenceID(int, String) - Method in class org.apache.ctakes.drugner.type.ChunkAnnotation_Type
 
setSentenceID(String) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
setter for sentenceID - sets contains the sentence id of the sentence that contains the NE's text span
setSentenceID(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
 
setSentenceNumber(int) - Method in class org.apache.ctakes.typesystem.type.textspan.Sentence
setter for sentenceNumber - sets
setSentenceNumber(int, int) - Method in class org.apache.ctakes.typesystem.type.textspan.Sentence_Type
 
setSeverity(String) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
setter for severity - sets
setSeverity(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
 
setSideEffect(IdentifiedAnnotation) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation
setter for sideEffect - sets side effect mention in NamedEntity
setSideEffect(int, int) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation_Type
 
setSourceApplication(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
setter for sourceApplication - sets
setSourceApplication(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
 
setSourceData(SourceData) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata
setter for sourceData - sets
setSourceData(int, int) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type
 
setSourceEncounterId(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
setter for sourceEncounterId - sets
setSourceEncounterId(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
 
setSourceInstanceId(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
setter for sourceInstanceId - sets
setSourceInstanceId(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
 
setSourceInstitution(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
setter for sourceInstitution - sets
setSourceInstitution(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
 
setSourceOriginalDate(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
setter for sourceOriginalDate - sets
setSourceOriginalDate(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
 
setSourceRevisionDate(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
setter for sourceRevisionDate - sets
setSourceRevisionDate(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
 
setSourceRevisionNbr(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
setter for sourceRevisionNbr - sets
setSourceRevisionNbr(int, int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
 
setStart(int) - Method in class org.apache.ctakes.core.sentence.SentenceSpan
Set offset of start of this span within the larger text
setStart_date(String) - Method in class edu.mayo.bmi.lookup.type.MetaHeader
setter for start_date - sets
setStart_date(int, String) - Method in class edu.mayo.bmi.lookup.type.MetaHeader_Type
 
setStartDate(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for startDate - sets
setStartDate(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setStartDate(Date) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
setter for startDate - sets
setStartDate(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
 
setStartDate(Date) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
setter for startDate - sets
setStartDate(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
 
setStartDateElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
 
setStartDateElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
 
setStartLine(int) - Method in class org.apache.ctakes.core.util.DocumentSection
 
setStartOffset(int) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
Sets the start offset.
setStartTime(Time) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
setter for startTime - sets
setStartTime(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
 
setStartTime(Time) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
setter for startTime - sets
setStartTime(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
 
setStartTime(Time) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
setter for startTime - sets
setStartTime(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
 
setStatus(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for status - sets
setStatus(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setStatus(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation
setter for status - sets Status of 'possible', 'history of', or 'family history of'.
setStatus(int, int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
 
setStatus(int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection
setter for status - sets
setStatus(int, int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection_Type
 
setStopWordsList(HashSet<String>) - Method in class org.apache.ctakes.coreference.util.AttributeCalculator
 
setStrength(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for strength - sets
setStrength(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setStrengthBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for strengthBegin - sets
setStrengthBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setStrengthElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
 
setStrengthElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
 
setStrengthEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for strengthEnd - sets
setStrengthEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setStrengthUnit(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for strengthUnit - sets
setStrengthUnit(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setStrengthUnitElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
 
setStrengthUnitElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
 
setSuBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for suBegin - sets
setSuBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setSubject(String) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
setter for subject - sets
setSubject(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
 
setSubject(String) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
setter for subject - sets
setSubject(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
 
setSubSectionBodyBegin(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation
setter for subSectionBodyBegin - sets Sub-section body begin offset.
setSubSectionBodyBegin(int, int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
 
setSubSectionBodyBegin(int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection
setter for subSectionBodyBegin - sets
setSubSectionBodyBegin(int, int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection_Type
 
setSubSectionBodyEnd(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation
setter for subSectionBodyEnd - sets Sub-section body end offset.
setSubSectionBodyEnd(int, int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
 
setSubSectionBodyEnd(int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection
setter for subSectionBodyEnd - sets
setSubSectionBodyEnd(int, int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection_Type
 
setSubSectionHeaderBegin(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation
setter for subSectionHeaderBegin - sets Begin offset of subSection header
setSubSectionHeaderBegin(int, int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
 
setSubSectionHeaderBegin(int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection
setter for subSectionHeaderBegin - sets
setSubSectionHeaderBegin(int, int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection_Type
 
setSubSectionHeaderEnd(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation
setter for subSectionHeaderEnd - sets Ending offset of subsection header
setSubSectionHeaderEnd(int, int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
 
setSubSectionHeaderEnd(int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection
setter for subSectionHeaderEnd - sets
setSubSectionHeaderEnd(int, int) - Method in class org.apache.ctakes.padtermspotter.type.SubSection_Type
 
setSuEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
setter for suEnd - sets
setSuEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
 
setSuggestion(String) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken
setter for suggestion - sets
setSuggestion(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken_Type
 
setTerminals(FSArray) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode
setter for terminals - sets Stores the terminal nodes of the parse tree.
setTerminals(int, TerminalTreebankNode) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode
indexed setter for terminals - sets an indexed value - Stores the terminal nodes of the parse tree.
setTerminals(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type
 
setTerminals(int, int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type
 
setText(String) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
 
setText(String) - Method in class org.apache.ctakes.core.sentence.SentenceSpan
 
setText(String) - Method in class org.apache.ctakes.preprocessor.DocumentMetaData
 
setTime(Time) - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention
setter for time - sets
setTime(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention_Type
 
setTimeClass(String) - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention
setter for timeClass - sets DATE, DURATION, QUANTIFIER, PREPOSTEXP, etc.
setTimeClass(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention_Type
 
setTokenIndex(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode
setter for tokenIndex - sets The tokenIndex of a terminal is n, where the terminal is the nth token in a sentence.
setTokenIndex(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode_Type
 
setTokenNumber(int) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken
setter for tokenNumber - sets
setTokenNumber(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken_Type
 
setTree(String) - Method in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree
setter for tree - sets
setTree(int, String) - Method in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree_Type
 
setTreebankParse(String) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode
setter for treebankParse - sets A bracketed sentence string representing the parse tree.
setTreebankParse(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type
 
setTui(String) - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept
setter for tui - sets
setTui(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept_Type
 
setType(byte) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
Sets the type of the token.
setType(String) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
Sets the type name of this annotation.
setTypeID(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
setter for typeID - sets The type of named entity (e.g.
setTypeID(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
 
setUaLocation(PADLocation) - Method in class org.apache.ctakes.padtermspotter.type.PADHit
setter for uaLocation - sets
setUaLocation(int, int) - Method in class org.apache.ctakes.padtermspotter.type.PADHit_Type
 
setUaTerm(PADTerm) - Method in class org.apache.ctakes.padtermspotter.type.PADHit
setter for uaTerm - sets
setUaTerm(int, int) - Method in class org.apache.ctakes.padtermspotter.type.PADHit_Type
 
setUncertainty(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
setter for uncertainty - sets
setUncertainty(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
 
setUncertainty(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation
setter for uncertainty - sets
setUncertainty(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
 
setUncertainty(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
setter for uncertainty - sets
setUncertainty(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
 
setUnit(String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabValue
setter for unit - sets
setUnit(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabValue_Type
 
setUnit(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency
setter for unit - sets The periodic unit used, e.g day, month, hour, etc.
setUnit(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency_Type
 
setUnit(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength
setter for unit - sets the unit of measurement
setUnit(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength_Type
 
setUp() - Method in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessorTest
 
setValue(String) - Method in class org.apache.ctakes.dictionary.lookup.filter.SetValuePostLookupFilterImpl
 
setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.BodyLaterality
setter for value - sets
setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.BodyLaterality_Type
 
setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.BodySide
setter for value - sets
setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.BodySide_Type
 
setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.Course
setter for value - sets
setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.Course_Type
 
setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag
setter for value - sets
setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag_Type
 
setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange
setter for value - sets
setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange_Type
 
setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDosage
setter for value - sets
setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDosage_Type
 
setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDuration
setter for value - sets
setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDuration_Type
 
setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationForm
setter for value - sets
setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationForm_Type
 
setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationRoute
setter for value - sets
setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationRoute_Type
 
setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange
setter for value - sets Indicates the change status of 'stop', 'start', 'increase', 'decrease', or 'noChange'.
setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange_Type
 
setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice
setter for value - sets
setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice_Type
 
setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod
setter for value - sets
setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod_Type
 
setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.Severity
setter for value - sets
setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.Severity_Type
 
setValue(String) - Method in class org.apache.ctakes.typesystem.type.util.Pair
setter for value - sets
setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.util.Pair_Type
 
SetValuePostLookupFilterImpl - Class in org.apache.ctakes.dictionary.lookup.filter
A filter that uses a value to filter against a MetaDataHit.
SetValuePostLookupFilterImpl(String, int, int, boolean) - Constructor for class org.apache.ctakes.dictionary.lookup.filter.SetValuePostLookupFilterImpl
 
setWordTokenLen(int) - Method in class org.apache.ctakes.core.nlp.tokenizer.ContractionResult
 
setYear(String) - Method in class org.apache.ctakes.typesystem.type.refsem.Date
setter for year - sets
setYear(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.Date_Type
 
SEUtil - Class in org.apache.ctakes.sideeffect.util
Utility methods used in the project
SEUtil() - Constructor for class org.apache.ctakes.sideeffect.util.SEUtil
 
Severity - Class in org.apache.ctakes.typesystem.type.refsem
An explicitly-mentioned indication of the seriousness of a condition.
Severity() - Constructor for class org.apache.ctakes.typesystem.type.refsem.Severity
Never called.
Severity(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Severity
Internal - constructor used by generator
Severity(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Severity
 
Severity_Type - Class in org.apache.ctakes.typesystem.type.refsem
An explicitly-mentioned indication of the seriousness of a condition.
Severity_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Severity_Type
initialize variables to correspond with Cas Type and Features
shallowCopy() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
Clones this object, its attributes, and reference keys.
SHAMPOO - Static variable in class org.apache.ctakes.drugner.elements.FormElement
 
shareAllXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
 
shareDevXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
 
shareEntityMentionRole - Static variable in class org.apache.ctakes.relationextractor.cr.Constants
 
shareModifierRole - Static variable in class org.apache.ctakes.relationextractor.cr.Constants
 
shareTestXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
 
shareTrainXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
 
sharpAllXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
 
sharpDevXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
 
sharpEntityMentionRole - Static variable in class org.apache.ctakes.relationextractor.cr.Constants
 
SHARPKnowtatorXMLReader - Class in org.apache.ctakes.core.ae
 
SHARPKnowtatorXMLReader() - Constructor for class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader
 
sharpModifierRole - Static variable in class org.apache.ctakes.relationextractor.cr.Constants
 
sharpRelationsAll - Static variable in class org.apache.ctakes.relationextractor.data.Constants
 
sharpRelationsHighPriority - Static variable in class org.apache.ctakes.relationextractor.data.Constants
 
sharpRelationsLowPriority - Static variable in class org.apache.ctakes.relationextractor.data.Constants
 
sharpRelationsSelected - Static variable in class org.apache.ctakes.relationextractor.data.Constants
 
sharpTestXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
 
sharpTrainXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
 
shortType() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
Returns a short description of this XcasAnnotation's type, specifically, the last segment as separated by dots.
SideEffectAnnotation - Class in org.apache.ctakes.sideeffect.type
Updated by JCasGen Tue Apr 09 11:47:21 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-side-effect/src/main/resources/org/apache/ctakes/sideeffect/types/TypeSystem.xml
SideEffectAnnotation() - Constructor for class org.apache.ctakes.sideeffect.type.SideEffectAnnotation
Never called.
SideEffectAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.sideeffect.type.SideEffectAnnotation
Internal - constructor used by generator
SideEffectAnnotation(JCas) - Constructor for class org.apache.ctakes.sideeffect.type.SideEffectAnnotation
 
SideEffectAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.sideeffect.type.SideEffectAnnotation
 
SideEffectAnnotation_Type - Class in org.apache.ctakes.sideeffect.type
Updated by JCasGen Tue Apr 09 11:47:21 EDT 2013
SideEffectAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.sideeffect.type.SideEffectAnnotation_Type
initialize variables to correspond with Cas Type and Features
SideEffectAnnotator - Class in org.apache.ctakes.sideeffect.ae
Rule-based side effect extraction.
SideEffectAnnotator() - Constructor for class org.apache.ctakes.sideeffect.ae.SideEffectAnnotator
 
SideEffectCasConsumer - Class in org.apache.ctakes.sideeffect.cc
 
SideEffectCasConsumer() - Constructor for class org.apache.ctakes.sideeffect.cc.SideEffectCasConsumer
 
SideEffectSentenceCasConsumer - Class in org.apache.ctakes.sideeffect.cc
 
SideEffectSentenceCasConsumer() - Constructor for class org.apache.ctakes.sideeffect.cc.SideEffectSentenceCasConsumer
 
SignSymptom - Class in org.apache.ctakes.typesystem.type.refsem
This is an Event from the UMLS semantic group of Sign or Symtom.
SignSymptom() - Constructor for class org.apache.ctakes.typesystem.type.refsem.SignSymptom
Never called.
SignSymptom(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.SignSymptom
Internal - constructor used by generator
SignSymptom(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.SignSymptom
 
SignSymptom_Type - Class in org.apache.ctakes.typesystem.type.refsem
This is an Event from the UMLS semantic group of Sign or Symtom.
SignSymptom_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
initialize variables to correspond with Cas Type and Features
SIMPLE_SEGMENTER_PATH - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearParserDescriptors
 
SimpleSegmentAnnotator - Class in org.apache.ctakes.core.ae
Creates a single segment annotation that spans the entire document.
SimpleSegmentAnnotator() - Constructor for class org.apache.ctakes.core.ae.SimpleSegmentAnnotator
 
SimpleSegmentAnnotatorTests - Class in org.apache.ctakes.core.ae
 
SimpleSegmentAnnotatorTests() - Constructor for class org.apache.ctakes.core.ae.SimpleSegmentAnnotatorTests
 
SimpleSegmentWithTagsAnnotator - Class in org.apache.ctakes.core.ae
Creates a single segment annotation that spans the entire document.
SimpleSegmentWithTagsAnnotator() - Constructor for class org.apache.ctakes.core.ae.SimpleSegmentWithTagsAnnotator
 
SimpleTree - Class in org.apache.ctakes.utils.tree
 
SimpleTree(String) - Constructor for class org.apache.ctakes.utils.tree.SimpleTree
 
SimpleTree(String, SimpleTree) - Constructor for class org.apache.ctakes.utils.tree.SimpleTree
 
SingleDocumentProcessorCtakes - Class in org.apache.ctakes.assertion.medfacts.i2b2.api
 
SingleDocumentProcessorCtakes() - Constructor for class org.apache.ctakes.assertion.medfacts.i2b2.api.SingleDocumentProcessorCtakes
 
size() - Method in class org.apache.ctakes.coreference.eval.helpers.Span
 
size - Variable in class org.apache.ctakes.postagger.test.CpeTests.StatusCallbackListenerImpl
 
SmokerNamedEntityAnnotation - Class in org.apache.ctakes.smokingstatus.type
Updated by JCasGen Tue Apr 09 11:47:02 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-smoking-status/src/main/resources/org/apache/ctakes/smokingstatus/types/TypeSystem.xml
SmokerNamedEntityAnnotation() - Constructor for class org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation
Never called.
SmokerNamedEntityAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation
Internal - constructor used by generator
SmokerNamedEntityAnnotation(JCas) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation
 
SmokerNamedEntityAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation
 
SmokerNamedEntityAnnotation_Type - Class in org.apache.ctakes.smokingstatus.type
Updated by JCasGen Tue Apr 09 11:47:03 EDT 2013
SmokerNamedEntityAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation_Type
initialize variables to correspond with Cas Type and Features
SmokerNamedEntityLookupConsumerImpl - Class in org.apache.ctakes.smokingstatus.lookup.ae
copied from edu.may.bmi.uima.lookup.ae.NamedEntityLookupConsumerImpl in the "Dictionary Lookup" project to use "SmokerNamedEntityAnnotation" instead of NamedEntityAnnotation
SmokerNamedEntityLookupConsumerImpl(UimaContext, Properties) - Constructor for class org.apache.ctakes.smokingstatus.lookup.ae.SmokerNamedEntityLookupConsumerImpl
 
SmokingDocumentClassification - Class in org.apache.ctakes.smokingstatus.type
Represents classification related to the document Updated by JCasGen Tue Apr 09 11:47:03 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-smoking-status/src/main/resources/org/apache/ctakes/smokingstatus/types/TypeSystem.xml
SmokingDocumentClassification() - Constructor for class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification
Never called.
SmokingDocumentClassification(int, TOP_Type) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification
Internal - constructor used by generator
SmokingDocumentClassification(JCas) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification
 
SmokingDocumentClassification(JCas, int, int) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification
 
SmokingDocumentClassification_Type - Class in org.apache.ctakes.smokingstatus.type
Represents classification related to the document Updated by JCasGen Tue Apr 09 11:47:03 EDT 2013
SmokingDocumentClassification_Type(JCas, Type) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification_Type
initialize variables to correspond with Cas Type and Features
smokingWords - Variable in class org.apache.ctakes.smokingstatus.ae.KuRuleBasedClassifierAnnotator
 
SOAP - Static variable in class org.apache.ctakes.drugner.elements.FormElement
 
SOLUTION - Static variable in class org.apache.ctakes.drugner.elements.FormElement
 
sort(Markable, LinkedList<Markable>, JCas) - Static method in class org.apache.ctakes.coreference.util.HobbsTreeNavigator
 
SourceData - Class in org.apache.ctakes.typesystem.type.structured
Information about the caregiving setting for the clinical document.
SourceData() - Constructor for class org.apache.ctakes.typesystem.type.structured.SourceData
Never called.
SourceData(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.SourceData
Internal - constructor used by generator
SourceData(JCas) - Constructor for class org.apache.ctakes.typesystem.type.structured.SourceData
 
SourceData_Type - Class in org.apache.ctakes.typesystem.type.structured
Information about the caregiving setting for the clinical document.
SourceData_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.SourceData_Type
initialize variables to correspond with Cas Type and Features
Span - Class in org.apache.ctakes.coreference.eval.helpers
 
Span() - Constructor for class org.apache.ctakes.coreference.eval.helpers.Span
 
Span(int[]) - Constructor for class org.apache.ctakes.coreference.eval.helpers.Span
 
Span(String) - Constructor for class org.apache.ctakes.coreference.eval.helpers.Span
 
span - Variable in class org.apache.ctakes.preprocessor.SegmentMetaData
 
Span - Class in org.apache.ctakes.relationextractor.knowtator
Represents span of a named entity
Span(int, int) - Constructor for class org.apache.ctakes.relationextractor.knowtator.Span
 
SpanAlignment - Class in org.apache.ctakes.coreference.eval.helpers
 
SpanAlignment(Span[], Span[]) - Constructor for class org.apache.ctakes.coreference.eval.helpers.SpanAlignment
 
spannedText - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation
The text spanned by this annnotation (null if not associated with a span of text).
SpanOffsetComparator - Class in org.apache.ctakes.coreference.eval.helpers
 
SpanOffsetComparator() - Constructor for class org.apache.ctakes.coreference.eval.helpers.SpanOffsetComparator
 
spans - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation
The character offsets of this annotation (empty if not associated with a span of text).
SPLIT - Static variable in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes
Constant indicates a sentence split.
split(CharSequence) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex
 
split() - Method in class org.apache.ctakes.relationextractor.data.Splitter
 
splitAtLineBreaksAndTrim(String) - Method in class org.apache.ctakes.core.sentence.SentenceSpan
Trim any leading or trailing whitespace.
Splitter - Class in org.apache.ctakes.relationextractor.data
Randomly split a set of files in a directory into three sets: train, dev, and test.
Splitter(double, double, double) - Constructor for class org.apache.ctakes.relationextractor.data.Splitter
Specify percentages of the split.
Splitter(int, int, int) - Constructor for class org.apache.ctakes.relationextractor.data.Splitter
Specify the size of each set.
SPRAY - Static variable in class org.apache.ctakes.drugner.elements.FormElement
 
SRL_DUMMY_MODEL_FILE - Static variable in class org.apache.ctakes.dependency.parser.ae.util.TestClearParserAnalysisEngines
 
SRL_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearParserDescriptors
 
srlModelFile - Variable in class org.apache.ctakes.dependency.parser.ae.util.TestClearParserAnalysisEngines.Options
 
SRLUtility - Class in org.apache.ctakes.dependency.parser.util
 
SRLUtility() - Constructor for class org.apache.ctakes.dependency.parser.util.SRLUtility
 
STAND_ALONE - Static variable in class org.apache.ctakes.padtermspotter.impl.PADLocationConsumerImpl
 
STAND_ALONE - Static variable in class org.apache.ctakes.padtermspotter.impl.PADTermConsumerImpl
 
StanfordDependency - Class in org.apache.ctakes.typesystem.type.syntax
Stanford dependencies provide a representation of grammatical relations between words in a sentence.
StanfordDependency() - Constructor for class org.apache.ctakes.typesystem.type.syntax.StanfordDependency
Never called.
StanfordDependency(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.StanfordDependency
Internal - constructor used by generator
StanfordDependency(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.StanfordDependency
 
StanfordDependency_Type - Class in org.apache.ctakes.typesystem.type.syntax
Stanford dependencies provide a representation of grammatical relations between words in a sentence.
StanfordDependency_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.StanfordDependency_Type
initialize variables to correspond with Cas Type and Features
START - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken
 
start - Variable in class org.apache.ctakes.preprocessor.IntegerRange
 
start - Variable in class org.apache.ctakes.relationextractor.knowtator.Span
 
START_STATUS - Static variable in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement
 
startDate - Variable in class org.apache.ctakes.drugner.DrugMention
If there is a specific date in the note associated with the drug mention, the specific date.
StartDateElement - Class in org.apache.ctakes.drugner.elements
 
StartDateElement() - Constructor for class org.apache.ctakes.drugner.elements.StartDateElement
 
StartDateElement(String, int, int) - Constructor for class org.apache.ctakes.drugner.elements.StartDateElement
 
startDocument() - Method in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
startElement(String, String, String, Attributes) - Method in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
 
startElement(String, String, String, Attributes) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasProcessor
 
startMatch(String, String) - Static method in class org.apache.ctakes.coreference.util.TextMatch
 
startOffset - Variable in class org.apache.ctakes.preprocessor.Annotation
 
startsWithWithoutBeingFollowedByLetter(String, String) - Static method in class org.apache.ctakes.core.nlp.tokenizer.TokenizerHelper
 
Stats - Class in org.apache.ctakes.relationextractor.data
Calculate relation frequencies in a data set that consists of XML files exported from Knowtator.
Stats() - Constructor for class org.apache.ctakes.relationextractor.data.Stats
 
stats - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.ParameterSettings
 
StatusAnnotatorTests - Class in org.apache.ctakes.necontexts
 
StatusAnnotatorTests() - Constructor for class org.apache.ctakes.necontexts.StatusAnnotatorTests
 
StatusContextAnalyzer - Class in org.apache.ctakes.necontexts.status
 
StatusContextAnalyzer() - Constructor for class org.apache.ctakes.necontexts.status.StatusContextAnalyzer
 
StatusContextHitConsumer - Class in org.apache.ctakes.necontexts.status
 
StatusContextHitConsumer() - Constructor for class org.apache.ctakes.necontexts.status.StatusContextHitConsumer
 
StatusIndicator - Class in org.apache.ctakes.core.fsm.output
 
StatusIndicator(int, int, int) - Constructor for class org.apache.ctakes.core.fsm.output.StatusIndicator
 
StatusIndicatorFSM - Class in org.apache.ctakes.core.fsm.machine
Uses one or more finite state machines to detect indications of
family history of
history of
possible/probable/likely
StatusIndicatorFSM() - Constructor for class org.apache.ctakes.core.fsm.machine.StatusIndicatorFSM
Constructor
StatusIndicatorFSM - Class in org.apache.ctakes.drugner.fsm.machines.util
Uses one or more finite state machines to detect ???
StatusIndicatorFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.util.StatusIndicatorFSM
Constructor
STOP - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken
 
STOP_STATUS - Static variable in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement
 
stopwords - Variable in class org.apache.ctakes.coreference.ae.MipacqMarkablePairGenerator
 
stopwords - Variable in class org.apache.ctakes.coreference.ae.MipacqSvmChainCreator
 
stopwords - Static variable in class org.apache.ctakes.coreference.util.AttributeCalculator
 
stopwords - Variable in class org.apache.ctakes.coreference.util.SvmVectorCreator
 
stopWords - Variable in class org.apache.ctakes.smokingstatus.ae.PcsClassifierAnnotator_libsvm
 
stopwords - Variable in class org.apache.ctakes.smokingstatus.MLutil.GenerateTrainingData
 
store(String, String) - Method in class org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel
Loads text from a file.
strength - Variable in class org.apache.ctakes.drugner.DrugMention
 
StrengthAnnotation - Class in org.apache.ctakes.drugner.type
Holds the value representing the unit of the drug dosage.
StrengthAnnotation() - Constructor for class org.apache.ctakes.drugner.type.StrengthAnnotation
Never called.
StrengthAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.StrengthAnnotation
Internal - constructor used by generator
StrengthAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.StrengthAnnotation
 
StrengthAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.StrengthAnnotation
 
StrengthAnnotation_Type - Class in org.apache.ctakes.drugner.type
Holds the value representing the unit of the drug dosage.
StrengthAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.StrengthAnnotation_Type
initialize variables to correspond with Cas Type and Features
StrengthCondition - Class in org.apache.ctakes.drugner.fsm.elements.conditions
Checks whether a token is a StrengthToken.
StrengthCondition() - Constructor for class org.apache.ctakes.drugner.fsm.elements.conditions.StrengthCondition
 
StrengthElement - Class in org.apache.ctakes.drugner.elements
 
StrengthElement() - Constructor for class org.apache.ctakes.drugner.elements.StrengthElement
 
StrengthElement(String, int, int) - Constructor for class org.apache.ctakes.drugner.elements.StrengthElement
 
StrengthFSM - Class in org.apache.ctakes.drugner.fsm.machines.elements
Uses one or more finite state machines to detect dosages in the given input of tokens.
StrengthFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.elements.StrengthFSM
Constructor
StrengthToken - Class in org.apache.ctakes.drugner.fsm.output.elements
 
StrengthToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.elements.StrengthToken
 
strengthUnit - Variable in class org.apache.ctakes.drugner.DrugMention
Span the drug form, if available.
StrengthUnitAnnotation - Class in org.apache.ctakes.drugner.type
Updated by JCasGen Tue Apr 09 11:46:08 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-drug-ner/src/main/resources/org/apache/ctakes/drugner/types/TypeSystem.xml
StrengthUnitAnnotation() - Constructor for class org.apache.ctakes.drugner.type.StrengthUnitAnnotation
Never called.
StrengthUnitAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.StrengthUnitAnnotation
Internal - constructor used by generator
StrengthUnitAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.StrengthUnitAnnotation
 
StrengthUnitAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.StrengthUnitAnnotation
 
StrengthUnitAnnotation_Type - Class in org.apache.ctakes.drugner.type
Updated by JCasGen Tue Apr 09 11:46:09 EDT 2013
StrengthUnitAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.StrengthUnitAnnotation_Type
initialize variables to correspond with Cas Type and Features
StrengthUnitCombinedCondition - Class in org.apache.ctakes.drugner.fsm.elements.conditions
Checks whether a token is a StrengthToken.
StrengthUnitCombinedCondition() - Constructor for class org.apache.ctakes.drugner.fsm.elements.conditions.StrengthUnitCombinedCondition
 
StrengthUnitCombinedToken - Class in org.apache.ctakes.drugner.fsm.output.elements
 
StrengthUnitCombinedToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.elements.StrengthUnitCombinedToken
 
StrengthUnitCondition - Class in org.apache.ctakes.drugner.fsm.elements.conditions
Checks whether a token is a StrengthToken.
StrengthUnitCondition() - Constructor for class org.apache.ctakes.drugner.fsm.elements.conditions.StrengthUnitCondition
 
StrengthUnitElement - Class in org.apache.ctakes.drugner.elements
 
StrengthUnitElement() - Constructor for class org.apache.ctakes.drugner.elements.StrengthUnitElement
 
StrengthUnitElement(String, int, int) - Constructor for class org.apache.ctakes.drugner.elements.StrengthUnitElement
 
StrengthUnitFSM - Class in org.apache.ctakes.drugner.fsm.machines.elements
Uses one or more finite state machines to detect dosages in the given input of tokens.
StrengthUnitFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.elements.StrengthUnitFSM
Constructor
StrengthUnitToken - Class in org.apache.ctakes.drugner.fsm.output.elements
 
StrengthUnitToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.elements.StrengthUnitToken
 
STRING_TYPE - Static variable in interface org.apache.ctakes.dictionary.lookup.MetaDataHitConst
 
StringAttributeValue - Class in org.apache.ctakes.smokingstatus.type.libsvm
Updated by JCasGen Tue Apr 09 11:47:04 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-smoking-status/src/main/resources/org/apache/ctakes/smokingstatus/types/TypeSystem.xml
StringAttributeValue() - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue
Never called.
StringAttributeValue(int, TOP_Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue
Internal - constructor used by generator
StringAttributeValue(JCas) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue
 
StringAttributeValue(JCas, int, int) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue
 
StringAttributeValue_Type - Class in org.apache.ctakes.smokingstatus.type.libsvm
Updated by JCasGen Tue Apr 09 11:47:04 EDT 2013
StringAttributeValue_Type(JCas, Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue_Type
initialize variables to correspond with Cas Type and Features
StringIntegerMapResource - Interface in org.apache.ctakes.core.resource
Resource that defines a map between a String (KEY) and Integer.
StringIntegerMapResourceImpl - Class in org.apache.ctakes.core.resource
Implementation for StringIntegerMapResource interface.
StringIntegerMapResourceImpl() - Constructor for class org.apache.ctakes.core.resource.StringIntegerMapResourceImpl
 
StringMapResource - Interface in org.apache.ctakes.core.resource
Resource that defines a map between a String (KEY) and Integer.
StringMapResourceImpl - Class in org.apache.ctakes.core.resource
Implementation for StringIntegerMapResource interface.
StringMapResourceImpl() - Constructor for class org.apache.ctakes.core.resource.StringMapResourceImpl
 
StringPreLookupFilterImpl - Class in org.apache.ctakes.dictionary.lookup.filter
 
StringPreLookupFilterImpl(Set) - Constructor for class org.apache.ctakes.dictionary.lookup.filter.StringPreLookupFilterImpl
 
stringSlots - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation
The string-valued annotation attributes
StringsResource - Interface in org.apache.ctakes.core.resource
A Resource interface for getting an array of strings.
StringTable - Class in org.apache.ctakes.dictionary.lookup.strtable
 
StringTable(String[]) - Constructor for class org.apache.ctakes.dictionary.lookup.strtable.StringTable
 
StringTableDictionaryImpl - Class in org.apache.ctakes.dictionary.lookup.strtable
 
StringTableDictionaryImpl(StringTable, String) - Constructor for class org.apache.ctakes.dictionary.lookup.strtable.StringTableDictionaryImpl
 
StringTableFactory - Class in org.apache.ctakes.dictionary.lookup.strtable
 
StringTableFactory() - Constructor for class org.apache.ctakes.dictionary.lookup.strtable.StringTableFactory
 
StringTableRow - Class in org.apache.ctakes.dictionary.lookup.strtable
 
StringTableRow() - Constructor for class org.apache.ctakes.dictionary.lookup.strtable.StringTableRow
 
StringTableRowMetaDataHitImpl - Class in org.apache.ctakes.dictionary.lookup.strtable
 
StringTableRowMetaDataHitImpl(StringTableRow) - Constructor for class org.apache.ctakes.dictionary.lookup.strtable.StringTableRowMetaDataHitImpl
 
SUBCUTANEOUS - Static variable in class org.apache.ctakes.drugner.elements.RouteElement
 
SUBCUTANEOUS - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken
 
SubjectAttributeAnalysisEngine - Class in org.apache.ctakes.assertion.attributes

This class provides a basic subject attribute extraction technique based on dependency parses.
SubjectAttributeAnalysisEngine() - Constructor for class org.apache.ctakes.assertion.attributes.SubjectAttributeAnalysisEngine
 
SubjectAttributeClassifier - Class in org.apache.ctakes.assertion.attributes.subject
 
SubjectAttributeClassifier() - Constructor for class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier
 
SubSection - Class in org.apache.ctakes.padtermspotter.type
Updated by JCasGen Tue Apr 09 11:44:33 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-pad-term-spotter/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml
SubSection() - Constructor for class org.apache.ctakes.padtermspotter.type.SubSection
Never called.
SubSection(int, TOP_Type) - Constructor for class org.apache.ctakes.padtermspotter.type.SubSection
Internal - constructor used by generator
SubSection(JCas) - Constructor for class org.apache.ctakes.padtermspotter.type.SubSection
 
SubSection(JCas, int, int) - Constructor for class org.apache.ctakes.padtermspotter.type.SubSection
 
SubSection_Type - Class in org.apache.ctakes.padtermspotter.type
Updated by JCasGen Tue Apr 09 11:44:33 EDT 2013
SubSection_Type(JCas, Type) - Constructor for class org.apache.ctakes.padtermspotter.type.SubSection_Type
initialize variables to correspond with Cas Type and Features
SubSectionAnnotation - Class in org.apache.ctakes.drugner.type
Updated by JCasGen Tue Apr 09 11:46:09 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-drug-ner/src/main/resources/org/apache/ctakes/drugner/types/TypeSystem.xml
SubSectionAnnotation() - Constructor for class org.apache.ctakes.drugner.type.SubSectionAnnotation
Never called.
SubSectionAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.SubSectionAnnotation
Internal - constructor used by generator
SubSectionAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.SubSectionAnnotation
 
SubSectionAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.SubSectionAnnotation
 
SubSectionAnnotation_Type - Class in org.apache.ctakes.drugner.type
Updated by JCasGen Tue Apr 09 11:46:09 EDT 2013
SubSectionAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
initialize variables to correspond with Cas Type and Features
SubSectionAnnotator - Class in org.apache.ctakes.padtermspotter.ae
 
SubSectionAnnotator() - Constructor for class org.apache.ctakes.padtermspotter.ae.SubSectionAnnotator
 
SubSectionIndicator - Class in org.apache.ctakes.drugner.fsm.output.util
 
SubSectionIndicator(int, int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.util.SubSectionIndicator
 
SubSectionIndicator - Class in org.apache.ctakes.padtermspotter.fsm.output
 
SubSectionIndicator(int, int, int) - Constructor for class org.apache.ctakes.padtermspotter.fsm.output.SubSectionIndicator
 
SubSectionIndicatorFSM - Class in org.apache.ctakes.drugner.fsm.machines.util
Uses one or more finite state machines to detect sub-sections in the given input of tokens.
SubSectionIndicatorFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.util.SubSectionIndicatorFSM
Constructor
SubSectionPadIdFSM - Class in org.apache.ctakes.padtermspotter.fsm.pad.machine
Uses one or more finite state machines to detect sub-sections in the given input of tokens.
SubSectionPadIdFSM() - Constructor for class org.apache.ctakes.padtermspotter.fsm.pad.machine.SubSectionPadIdFSM
Constructor
SuffixFrequencyFSM - Class in org.apache.ctakes.drugner.fsm.machines.util
Uses one or more finite state machines to detect frequency suffix data in the given input of tokens.
SuffixFrequencyFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM
Constructor
SuffixFrequencyToken - Class in org.apache.ctakes.drugner.fsm.output.util
 
SuffixFrequencyToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.util.SuffixFrequencyToken
 
SuffixMaxentModelResourceImpl - Class in org.apache.ctakes.core.resource
Loads a suffix-sensitive GISModel into memory as a shared UIMA resource.
SuffixMaxentModelResourceImpl() - Constructor for class org.apache.ctakes.core.resource.SuffixMaxentModelResourceImpl
 
SuffixStrengthAnnotation - Class in org.apache.ctakes.drugner.type
The suffix portion of dosage strength determination for the Drug NER profile.
SuffixStrengthAnnotation() - Constructor for class org.apache.ctakes.drugner.type.SuffixStrengthAnnotation
Never called.
SuffixStrengthAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.SuffixStrengthAnnotation
Internal - constructor used by generator
SuffixStrengthAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.SuffixStrengthAnnotation
 
SuffixStrengthAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.SuffixStrengthAnnotation
 
SuffixStrengthAnnotation_Type - Class in org.apache.ctakes.drugner.type
The suffix portion of dosage strength determination for the Drug NER profile.
SuffixStrengthAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.SuffixStrengthAnnotation_Type
initialize variables to correspond with Cas Type and Features
SuffixStrengthFSM - Class in org.apache.ctakes.drugner.fsm.machines.util
Uses one or more finite state machines to detect strength suffix information adjoined to dosage data in the given input of tokens.
SuffixStrengthFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.util.SuffixStrengthFSM
Constructor
SuffixStrengthToken - Class in org.apache.ctakes.drugner.fsm.output.util
 
SuffixStrengthToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.util.SuffixStrengthToken
 
SUM - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken
 
SUMMATION_STATUS - Static variable in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement
 
SUPPOSITORY - Static variable in class org.apache.ctakes.drugner.elements.FormElement
 
svmCost - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.ParameterSettings
 
svmGamma - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.ParameterSettings
 
svmKernel - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.ParameterSettings
 
svmKernelIndex - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.ParameterSettings
 
SvmUtils - Class in org.apache.ctakes.coreference.util
 
SvmUtils() - Constructor for class org.apache.ctakes.coreference.util.SvmUtils
 
SvmVectorCreator - Class in org.apache.ctakes.coreference.util
 
SvmVectorCreator(HashSet<String>) - Constructor for class org.apache.ctakes.coreference.util.SvmVectorCreator
 
SvmVectorCreator(HashSet<String>, svm_model) - Constructor for class org.apache.ctakes.coreference.util.SvmVectorCreator
 
SymbolToken - Interface in org.apache.ctakes.core.fsm.token
 
SymbolToken - Class in org.apache.ctakes.typesystem.type.syntax
Differentiates a token as being a symbol rather than a punctuation, contraction, newline, word, or number.
SymbolToken() - Constructor for class org.apache.ctakes.typesystem.type.syntax.SymbolToken
Never called.
SymbolToken(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SymbolToken
Internal - constructor used by generator
SymbolToken(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SymbolToken
 
SymbolToken(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SymbolToken
 
SymbolToken_Type - Class in org.apache.ctakes.typesystem.type.syntax
Differentiates a token as being a symbol rather than a punctuation, contraction, newline, word, or number.
SymbolToken_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SymbolToken_Type
initialize variables to correspond with Cas Type and Features
SymbolTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters
Adapts JCas token annotation to interface expected by the Context Dependent Tokenizer.
SymbolTokenAdapter(SymbolToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.SymbolTokenAdapter
 
SymbolValueCondition - Class in org.apache.ctakes.core.fsm.condition
 
SymbolValueCondition(char) - Constructor for class org.apache.ctakes.core.fsm.condition.SymbolValueCondition
 
SyntaxAttributeCalculator - Class in org.apache.ctakes.coreference.util
 
SyntaxAttributeCalculator(JCas, Markable, Markable) - Constructor for class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
 
SYRINGE - Static variable in class org.apache.ctakes.drugner.elements.FormElement
 
SYRUP - Static variable in class org.apache.ctakes.drugner.elements.FormElement
 
sysId2AlignId - Variable in class org.apache.ctakes.coreference.util.GoldStandardLabeler
 
sysSpan2id - Variable in class org.apache.ctakes.coreference.util.GoldStandardLabeler
 
sysSpans - Variable in class org.apache.ctakes.coreference.util.GoldStandardLabeler
 

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