org.apache.ctakes.ytex.uima.annotators

Class DBConsumer

java.lang.Object

org.apache.uima.analysis_component.AnalysisComponent_ImplBase

org.apache.uima.analysis_component.Annotator_ImplBase

org.apache.uima.analysis_component.JCasAnnotator_ImplBase

org.apache.ctakes.ytex.uima.annotators.DBConsumer

All Implemented Interfaces:

org.apache.uima.analysis_component.AnalysisComponent

@PipeBitInfo(name="XMI Writer 3",
             description="Writes XMI files with full representation of input text and all extracted information.",
             role=WRITER,
             dependencies=DOCUMENT_ID)
public class DBConsumer
extends org.apache.uima.analysis_component.JCasAnnotator_ImplBase

Store the document text, cas, and annotations in the database. Delegates to DocumentMapperService. This is an annotator and not a consumer because according to the uima docs the Consumer interface is deprecated. Config parameters:

• xmiOutputDirectory - String - directory where the xmi serialized cas should be stored. Leave empty if you don't want to store the xmi. Defaults to empty.
• analysisBatch - String - Document group/analysis batch, stored in document.analysis_batch. Defaults to current date/time.
• storeDocText - boolean - should the document text be stored in the DB? defaults to true
• storeCAS - boolean - should the serialized xmi cas be stored in the DB? defaults to true
• typesToIngore - multivalued String - uima types not to be saved.
• insertAnnotationContainmentLinks - boolean - should we store containment links? defaults to true

Author:

vijay

Constructor Summary

Constructors

Constructor and Description
DBConsumer()

Method Summary

Modifier and Type	Method and Description
void	initialize(org.apache.uima.UimaContext aContext) read config parameters
void	process(org.apache.uima.jcas.JCas jcas) call the documentMapperService to save the document.

Methods inherited from class org.apache.uima.analysis_component.JCasAnnotator_ImplBase

getRequiredCasInterface, process

Methods inherited from class org.apache.uima.analysis_component.Annotator_ImplBase

getCasInstancesRequired, hasNext, next

Methods inherited from class org.apache.uima.analysis_component.AnalysisComponent_ImplBase

batchProcessComplete, collectionProcessComplete, destroy, getContext, getResultSpecification, reconfigure, setResultSpecification

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DBConsumer

public DBConsumer()

Method Detail

initialize

public void initialize(org.apache.uima.UimaContext aContext)
                throws org.apache.uima.resource.ResourceInitializationException

read config parameters

Specified by:

initialize in interface org.apache.uima.analysis_component.AnalysisComponent

Overrides:

initialize in class org.apache.uima.analysis_component.AnalysisComponent_ImplBase

Throws:

org.apache.uima.resource.ResourceInitializationException

process

public void process(org.apache.uima.jcas.JCas jcas)

call the documentMapperService to save the document. if the xmiOutputDirectory is defined, write the document to an xmi file. use the name corresponding to the documentID.

Specified by:

process in class org.apache.uima.analysis_component.JCasAnnotator_ImplBase