org.apache.ctakes.coreference.eval

Class EvaluationOfEventCoreference

java.lang.Object

org.cleartk.eval.Evaluation_ImplBase<Integer,STATISTICS_TYPE>

org.apache.ctakes.temporal.eval.Evaluation_ImplBase<org.cleartk.eval.AnnotationStatistics<String>>

org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase

org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference

public class EvaluationOfEventCoreference
extends EvaluationOfTemporalRelations_ImplBase

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	EvaluationOfEventCoreference.AnnotationComparator
static class	EvaluationOfEventCoreference.CopyCoreferenceRelations
static class	EvaluationOfEventCoreference.CopyGoldMarkablesInChains
static class	EvaluationOfEventCoreference.CorefEvalFlowController
static class	EvaluationOfEventCoreference.DocumentIDPrinter
static class	EvaluationOfEventCoreference.EVAL_SYSTEM
static class	EvaluationOfEventCoreference.ParagraphAnnotator
static class	EvaluationOfEventCoreference.ParagraphVectorAnnotator
static class	EvaluationOfEventCoreference.RelationPropagator
static class	EvaluationOfEventCoreference.RemoveAllCoreferenceAnnotations
static class	EvaluationOfEventCoreference.RemovePersonMarkables

Nested classes/interfaces inherited from class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase

EvaluationOfTemporalRelations_ImplBase.PreserveEventEventRelations, EvaluationOfTemporalRelations_ImplBase.RemoveGoldAttributes, EvaluationOfTemporalRelations_ImplBase.RemoveNonContainsRelations, EvaluationOfTemporalRelations_ImplBase.TempRelOptions

Nested classes/interfaces inherited from class org.apache.ctakes.temporal.eval.Evaluation_ImplBase

Evaluation_ImplBase.CopyFromGold, Evaluation_ImplBase.CopyFromSystem, Evaluation_ImplBase.CopyNPChunksToLookupWindowAnnotations, Evaluation_ImplBase.EntityMentionRemover, Evaluation_ImplBase.EventMentionRemover, Evaluation_ImplBase.Options, Evaluation_ImplBase.PittHeaderAnnotator, Evaluation_ImplBase.RemoveEnclosedLookupWindows, Evaluation_ImplBase.SegmentsFromBracketedSectionTagsAnnotator, Evaluation_ImplBase.Subcorpus, Evaluation_ImplBase.TimexAnnotationCorrector, Evaluation_ImplBase.UriToDocumentTextAnnotatorCtakes, Evaluation_ImplBase.WriteAnaforaXML, Evaluation_ImplBase.WriteI2B2XML, Evaluation_ImplBase.XMIReader, Evaluation_ImplBase.XMIWriter, Evaluation_ImplBase.XMLFormat

Field Summary

Fields

Modifier and Type	Field and Description
protected static EvaluationOfEventTimeRelations.ParameterSettings	clusterParams
static float	COREF_CLUSTER_DOWNSAMPLE
static float	COREF_PAIRS_DOWNSAMPLE
protected static EvaluationOfEventTimeRelations.ParameterSettings	pairwiseParams

Fields inherited from class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase

DEFAULT_BOTH_DIRECTIONS, DEFAULT_DOWNSAMPLE, DEFAULT_LAMBDA, DEFAULT_SVM_C, DEFAULT_SVM_G, DEFAULT_TK, defaultParams, params, printRelations

Fields inherited from class org.apache.ctakes.temporal.eval.Evaluation_ImplBase

anaforaOutput, badNotes, GOLD_VIEW_NAME, i2b2Output, kernelParams, printErrors, printOverlapping, PROB_VIEW_NAME, rawTextDirectory, subcorpus, treebankDirectory, xmiDirectory, xmlDirectory, xmlFormat

Fields inherited from class org.cleartk.eval.Evaluation_ImplBase

baseDirectory

Constructor Summary

Constructors

Constructor and Description
EvaluationOfEventCoreference(File baseDirectory, File rawTextDirectory, File xmlDirectory, Evaluation_ImplBase.XMLFormat xmlFormat, Evaluation_ImplBase.Subcorpus subcorpus, File xmiDirectory, File treebankDirectory, boolean printErrors, boolean printRelations, EvaluationOfEventTimeRelations.ParameterSettings params, String cmdParams, String outputDirectory)

Method Summary

Modifier and Type	Method and Description
static void	main(String[] args)
protected org.cleartk.eval.AnnotationStatistics<String>	test(org.apache.uima.collection.CollectionReader collectionReader, File directory)
protected void	train(org.apache.uima.collection.CollectionReader collectionReader, File directory)

Methods inherited from class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase

correctArgOrder, formatRelation, printRelationAnnotations

Methods inherited from class org.apache.ctakes.temporal.eval.Evaluation_ImplBase

getCollectionReader, getPreprocessorAggregateBuilder, getRelationId, getTestItems, getTrainItems, getXMIReadingPreprocessorAggregateBuilder, getXMIWritingPreprocessorAggregateBuilder, prepareXMIsFor, selectExact, setI2B2Output

Methods inherited from class org.cleartk.eval.Evaluation_ImplBase

crossValidation, selectFoldTestItems, selectFoldTrainItems, trainAndTest

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

COREF_PAIRS_DOWNSAMPLE

public static float COREF_PAIRS_DOWNSAMPLE

COREF_CLUSTER_DOWNSAMPLE

public static float COREF_CLUSTER_DOWNSAMPLE

pairwiseParams

protected static EvaluationOfEventTimeRelations.ParameterSettings pairwiseParams

clusterParams

protected static EvaluationOfEventTimeRelations.ParameterSettings clusterParams

Constructor Detail

EvaluationOfEventCoreference

public EvaluationOfEventCoreference(File baseDirectory,
                                    File rawTextDirectory,
                                    File xmlDirectory,
                                    Evaluation_ImplBase.XMLFormat xmlFormat,
                                    Evaluation_ImplBase.Subcorpus subcorpus,
                                    File xmiDirectory,
                                    File treebankDirectory,
                                    boolean printErrors,
                                    boolean printRelations,
                                    EvaluationOfEventTimeRelations.ParameterSettings params,
                                    String cmdParams,
                                    String outputDirectory)

Method Detail

main

public static void main(String[] args)
                 throws Exception

Throws:

Exception

train

protected void train(org.apache.uima.collection.CollectionReader collectionReader,
                     File directory)
              throws Exception

Specified by:

train in class org.cleartk.eval.Evaluation_ImplBase<Integer,org.cleartk.eval.AnnotationStatistics<String>>

Throws:

Exception

test

protected org.cleartk.eval.AnnotationStatistics<String> test(org.apache.uima.collection.CollectionReader collectionReader,
                                                             File directory)
                                                      throws Exception

Specified by:

test in class org.cleartk.eval.Evaluation_ImplBase<Integer,org.cleartk.eval.AnnotationStatistics<String>>

Throws:

Exception