org.apache.ctakes.assertion.cr

Class NegExCorpusReader

java.lang.Object

org.apache.uima.resource.Resource_ImplBase

org.apache.uima.resource.ConfigurableResource_ImplBase

org.apache.uima.collection.CollectionReader_ImplBase

org.apache.ctakes.assertion.cr.NegExCorpusReader

All Implemented Interfaces:

org.apache.uima.collection.base_cpm.BaseCollectionReader, org.apache.uima.collection.CollectionReader, org.apache.uima.resource.ConfigurableResource, org.apache.uima.resource.Resource

@PipeBitInfo(name="NegEx Corpus Reader",
             description="Reads lines from file named by AssertionConst.NEGEX_CORPUS",
             role=READER,
             products={DOCUMENT_ID,IDENTIFIED_ANNOTATION})
public class NegExCorpusReader
extends org.apache.uima.collection.CollectionReader_ImplBase

Reads lines from file named by AssertionConst.NEGEX_CORPUS If use the main() method, uses this collection reader to read the corpus and then uses the XMI writer to write the XMI to directory given by AssertionConst.NEGEX_CORPUS_PREPROCESSED

Field Summary

Fields inherited from interface org.apache.uima.resource.Resource

PARAM_AGGREGATE_SOFA_MAPPINGS, PARAM_CONFIG_MANAGER, PARAM_CONFIG_PARAM_SETTINGS, PARAM_EXTERNAL_OVERRIDE_SETTINGS, PARAM_PERFORMANCE_TUNING_SETTINGS, PARAM_RESOURCE_MANAGER, PARAM_UIMA_CONTEXT

Constructor Summary

Constructors

Constructor and Description
NegExCorpusReader()
NegExCorpusReader(boolean skipReadingValuesJustReadText)

Method Summary

Modifier and Type	Method and Description
void	close()
void	getNext(org.apache.uima.cas.CAS aCAS) Does more than a typical reader - also creates an IdentifiedAnnotation and a DocumentID annotation
org.apache.uima.util.Progress[]	getProgress()
boolean	hasNext()
static void	main(String[] args) This main method is only for testing purposes.

Methods inherited from class org.apache.uima.collection.CollectionReader_ImplBase

destroy, getCasInitializer, getProcessingResourceMetaData, initialize, initialize, isConsuming, reconfigure, setCasInitializer, typeSystemInit

Methods inherited from class org.apache.uima.resource.ConfigurableResource_ImplBase

getConfigParameterValue, getConfigParameterValue, setConfigParameterValue, setConfigParameterValue

Methods inherited from class org.apache.uima.resource.Resource_ImplBase

getCasManager, getLogger, getMetaData, getResourceManager, getUimaContext, getUimaContextAdmin, setLogger, setMetaData

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.apache.uima.resource.ConfigurableResource

getConfigParameterValue, getConfigParameterValue, setConfigParameterValue, setConfigParameterValue

Methods inherited from interface org.apache.uima.resource.Resource

getLogger, getMetaData, getResourceManager, getUimaContext, getUimaContextAdmin, setLogger

Constructor Detail

NegExCorpusReader

public NegExCorpusReader()

NegExCorpusReader

public NegExCorpusReader(boolean skipReadingValuesJustReadText)

Method Detail

main

public static void main(String[] args)
                 throws Exception

This main method is only for testing purposes. It runs the reader on Knowtator directories. args[0] = "/usr/data/MiPACQ/copies-of-just-clinical-knowtator-xml-and-text/"; should have a child directory called "text" should have a child directory called "exported-xml" files in knowtator xml directory should have files that end with .xml

Throws:

Exception

getNext

public void getNext(org.apache.uima.cas.CAS aCAS)
             throws IOException,
                    org.apache.uima.collection.CollectionException

Does more than a typical reader - also creates an IdentifiedAnnotation and a DocumentID annotation

Throws:

IOException

org.apache.uima.collection.CollectionException

hasNext

public boolean hasNext()
                throws IOException,
                       org.apache.uima.collection.CollectionException

Throws:

IOException

org.apache.uima.collection.CollectionException

close

public void close()
           throws IOException

Throws:

IOException

getProgress

public org.apache.uima.util.Progress[] getProgress()