A B C D E F G H I J K L M N O P Q R S T U V W X

E

EditDistance - Class in org.apache.ctakes.coreference.util

EditDistance() - Constructor for class org.apache.ctakes.coreference.util.EditDistance

edu.mayo.bmi.lookup.type - package edu.mayo.bmi.lookup.type

Element - Class in org.apache.ctakes.typesystem.type.refsem

A basic semantic unit that refers to something in the real world, including Entities, Events, Attributes, Dates.

Element() - Constructor for class org.apache.ctakes.typesystem.type.refsem.Element

Never called.

Element(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Element

Internal - constructor used by generator

Element(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Element

Element_Type - Class in org.apache.ctakes.typesystem.type.refsem

A basic semantic unit that refers to something in the real world, including Entities, Events, Attributes, Dates.

Element_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Element_Type

initialize variables to correspond with Cas Type and Features

ElementRelation - Class in org.apache.ctakes.typesystem.type.relation

A super-type referring to real-world semantic relationships, e.g., TemporalRelations between two Events.

ElementRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.ElementRelation

Never called.

ElementRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ElementRelation

Internal - constructor used by generator

ElementRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.ElementRelation

ElementRelation_Type - Class in org.apache.ctakes.typesystem.type.relation

A super-type referring to real-world semantic relationships, e.g., TemporalRelations between two Events.

ElementRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ElementRelation_Type

initialize variables to correspond with Cas Type and Features

ELIXIR - Static variable in class org.apache.ctakes.drugner.elements.FormElement

ellipsisExpectedResults - Variable in class org.apache.ctakes.core.ae.TokenizerAnnotatorPTBTests

ellipsisTest - Variable in class org.apache.ctakes.core.ae.TokenizerAnnotatorPTBTests

emptyStringList - Static variable in class org.apache.ctakes.core.nlp.tokenizer.TokenizerPTB

emptyTokenList - Static variable in class org.apache.ctakes.core.nlp.tokenizer.TokenizerPTB

EMULSION - Static variable in class org.apache.ctakes.drugner.elements.FormElement

end - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation.Span

The offset immediately after the last character in the text span.

end - Variable in class org.apache.ctakes.preprocessor.IntegerRange

end - Variable in class org.apache.ctakes.relationextractor.knowtator.Span

endDate - Variable in class org.apache.ctakes.drugner.DrugMention

endDocument() - Method in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

endElement(String, String, String) - Method in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

endElement(String, String, String) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasProcessor

endMatch(String, String) - Static method in class org.apache.ctakes.coreference.util.TextMatch

endOffset - Variable in class org.apache.ctakes.preprocessor.Annotation

EndOfSentenceScannerImpl - Class in org.apache.ctakes.core.sentence

End of Sentence scanner with more candidate end-of-sentence characters than the default.

EndOfSentenceScannerImpl() - Constructor for class org.apache.ctakes.core.sentence.EndOfSentenceScannerImpl

ENEMA - Static variable in class org.apache.ctakes.drugner.elements.FormElement

ENG_LEMMATIZER_DATA_FILE - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearParserDependencyParserAE

ENG_LEMMATIZER_DATA_FILE - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearParserSemanticRoleLabelerAE

enter(Object) - Method in class org.apache.ctakes.core.fsm.state.NamedState

enter(Object) - Method in class org.apache.ctakes.core.fsm.state.NonTerminalEndState

enter(Object) - Method in class org.apache.ctakes.drugner.fsm.states.util.IndentStartState

Entity - Class in org.apache.ctakes.typesystem.type.refsem

A real-world entity such as a body part.

Entity() - Constructor for class org.apache.ctakes.typesystem.type.refsem.Entity

Never called.

Entity(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Entity

Internal - constructor used by generator

Entity(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Entity

Entity_Type - Class in org.apache.ctakes.typesystem.type.refsem

A real-world entity such as a body part.

Entity_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Entity_Type

initialize variables to correspond with Cas Type and Features

entityCount - Variable in class org.apache.ctakes.postagger.test.CpeTests.StatusCallbackListenerImpl

EntityMention - Class in org.apache.ctakes.typesystem.type.textsem

A text string (IdentifiedAnnotation) that refers to an Entity.

EntityMention() - Constructor for class org.apache.ctakes.typesystem.type.textsem.EntityMention

Never called.

EntityMention(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.EntityMention

Internal - constructor used by generator

EntityMention(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.EntityMention

EntityMention(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.EntityMention

EntityMention_Type - Class in org.apache.ctakes.typesystem.type.textsem

A text string (IdentifiedAnnotation) that refers to an Entity.

EntityMention_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.EntityMention_Type

initialize variables to correspond with Cas Type and Features

EntityMentionPairRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae

Identifies and classifies relations between pairs of named entities

EntityMentionPairRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.EntityMentionPairRelationExtractorAnnotator

entityProcessComplete(CAS, EntityProcessStatus) - Method in class org.apache.ctakes.postagger.test.CpeTests.StatusCallbackListenerImpl

Called when the processing of a Document is completed.

EntitySpanFeatureExtractor - Class in org.apache.ctakes.relationextractor.ae.features

Features that indicate whether both arguments are contained within an NP.

EntitySpanFeatureExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.EntitySpanFeatureExtractor

ENTRY_FEATURE - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearParserUtil

ENTRY_LEXICA - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearParserUtil

ENTRY_MODEL - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearParserUtil

ENTRY_PARSER - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearParserUtil

EnvironmentVariable - Class in org.apache.ctakes.utils.env

EnvironmentVariable() - Constructor for class org.apache.ctakes.utils.env.EnvironmentVariable

EolToken - Interface in org.apache.ctakes.core.fsm.token

EQ_OP - Static variable in interface org.apache.ctakes.dictionary.lookup.MetaDataHitConst

EQ_OP - Static variable in class org.apache.ctakes.dictionary.lookup.strtable.FieldConstraintImpl

equalCoverage(Annotation, Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.ClearDependencyUtility

Equality expressions to aid in converting between DepNodes and CAS objects

equalCoverage(Annotation, Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility

Equality expressions to aid in converting between DepNodes and CAS objects

equals(Object) - Method in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation

equals(Object) - Method in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation.Span

equals(Object) - Method in class org.apache.ctakes.coreference.eval.helpers.Span

equals(MetaDataHit) - Method in class org.apache.ctakes.dictionary.lookup.BaseMetaDataHitImpl

Two MetaDataHits are equal if their Meta field name/value pairs are equal.

equals(MetaDataHit) - Method in interface org.apache.ctakes.dictionary.lookup.MetaDataHit

equals(Object) - Method in class org.apache.ctakes.dictionary.lookup.vo.LookupHit

Override default equals method.

equals(Object) - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator.HashableArguments

equals(Object) - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.ParameterSettings

equals(Object) - Method in class org.apache.ctakes.relationextractor.knowtator.RelationInfo

equals(Object) - Method in class org.apache.ctakes.relationextractor.knowtator.Span

equals(Object) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation

Determines whether the specified object equals to this one.

equals(Object) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasFile

Checks whether the specified object has the same set of annotations.

equivCls(int[]) - Method in class org.apache.ctakes.coreference.util.ParentPtrTree

errorFile - Variable in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

errorOutStream - Variable in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

eval(Object, Object) - Method in class org.apache.ctakes.constituency.parser.treekernel.TreeKernel

eval(Object, Object) - Method in class org.apache.ctakes.utils.kernel.Kernel

eval(Object, Object) - Method in class org.apache.ctakes.utils.kernel.PolyKernel

eval(Object, Object) - Method in class org.apache.ctakes.utils.kernel.RBFKernel

Event - Class in org.apache.ctakes.typesystem.type.refsem

A real-world event; similar to Entity, but may bear some temporal properties and relationships.

Event() - Constructor for class org.apache.ctakes.typesystem.type.refsem.Event

Never called.

Event(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Event

Internal - constructor used by generator

Event(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Event

Event_Type - Class in org.apache.ctakes.typesystem.type.refsem

A real-world event; similar to Entity, but may bear some temporal properties and relationships.

Event_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Event_Type

initialize variables to correspond with Cas Type and Features

EventMention - Class in org.apache.ctakes.typesystem.type.textsem

A text string (IdentifiedAnnotation) that refers to an Event.

EventMention() - Constructor for class org.apache.ctakes.typesystem.type.textsem.EventMention

Never called.

EventMention(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.EventMention

Internal - constructor used by generator

EventMention(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.EventMention

EventMention(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.EventMention

EventMention_Type - Class in org.apache.ctakes.typesystem.type.textsem

A text string (IdentifiedAnnotation) that refers to an Event.

EventMention_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.EventMention_Type

initialize variables to correspond with Cas Type and Features

EventProperties - Class in org.apache.ctakes.typesystem.type.refsem

A set of mostly temporal properties that are unique to Events.

EventProperties() - Constructor for class org.apache.ctakes.typesystem.type.refsem.EventProperties

Never called.

EventProperties(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.EventProperties

Internal - constructor used by generator

EventProperties(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.EventProperties

EventProperties_Type - Class in org.apache.ctakes.typesystem.type.refsem

A set of mostly temporal properties that are unique to Events.

EventProperties_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type

initialize variables to correspond with Cas Type and Features

EVERYOTHERDAY - Static variable in class org.apache.ctakes.drugner.elements.FrequencyUnitElement

execute(List<? extends BaseToken>) - Method in class org.apache.ctakes.core.fsm.machine.DateFSM

Executes the finite state machines.

execute(List<? extends BaseToken>) - Method in class org.apache.ctakes.core.fsm.machine.FractionFSM

Executes the finite state machines.

execute(List) - Method in interface org.apache.ctakes.core.fsm.machine.FSM

execute(List<? extends BaseToken>, Set<? extends BaseToken>) - Method in class org.apache.ctakes.core.fsm.machine.MeasurementFSM

Executes the finite state machines.

execute(List<?>) - Method in class org.apache.ctakes.core.fsm.machine.NegationFSM

Executes the finite state machines.

execute(List<? extends BaseToken>) - Method in class org.apache.ctakes.core.fsm.machine.PersonTitleFSM

Executes the finite state machines.

execute(List<? extends BaseToken>, Set<? extends BaseToken>) - Method in class org.apache.ctakes.core.fsm.machine.RangeFSM

Executes the finite state machines.

execute(List<? extends BaseToken>) - Method in class org.apache.ctakes.core.fsm.machine.RomanNumeralFSM

Executes the finite state machines.

execute(List<TextToken>) - Method in class org.apache.ctakes.core.fsm.machine.StatusIndicatorFSM

Executes the finite state machines.

execute(List<? extends BaseToken>) - Method in class org.apache.ctakes.core.fsm.machine.TimeFSM

Executes the finite state machines.

execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.DecimalStrengthFSM

Executes the finite state machines.

execute(List, Set, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.DosagesFSM

Executes the finite state machines.

execute(List, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.DosagesFSM

Executes the finite state machines.

execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM

Executes the finite state machines.

execute(List, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.DurationFSM

Executes the finite state machines.

execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.DurationFSM

Executes the finite state machines.

execute(List, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.FormFSM

Executes the finite state machines.

execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.FormFSM

Executes the finite state machines.

execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.FractionStrengthFSM

Executes the finite state machines.

execute(List, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyFSM

Executes the finite state machines.

execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyFSM

Executes the finite state machines.

execute(List, Set, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyFSM

Executes the finite state machines.

execute(List, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

Executes the finite state machines.

execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM

Executes the finite state machines.

execute(List, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.RangeStrengthFSM

Executes the finite state machines.

execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.RangeStrengthFSM

Executes the finite state machines.

execute(List, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM

Executes the finite state machines.

execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM

Executes the finite state machines.

execute(List, Set, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.StrengthFSM

Executes the finite state machines.

execute(List, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.StrengthFSM

Executes the finite state machines.

execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.StrengthFSM

Executes the finite state machines.

execute(List, Set, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.StrengthUnitFSM

Executes the finite state machines.

execute(List, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.StrengthUnitFSM

Executes the finite state machines.

execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.util.HyphenatedDrugFSM

Executes the finite state machines.

execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.util.NegIndicatorFSM

Executes the finite state machines.

execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.util.NonIndicatorFSM

Executes the finite state machines.

execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.util.StatusIndicatorFSM

Executes the finite state machines.

execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.util.SubSectionIndicatorFSM

Executes the finite state machines.

execute(List, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM

Executes the finite state machines.

execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM

Executes the finite state machines.

execute(List, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.util.SuffixStrengthFSM

Executes the finite state machines.

execute(List<? extends BaseToken>) - Method in class org.apache.ctakes.padtermspotter.fsm.pad.machine.DxIndicatorFSM

Executes the finite state machines.

execute(List<? extends BaseToken>) - Method in class org.apache.ctakes.padtermspotter.fsm.pad.machine.NegDxIndicatorFSM

Executes the finite state machines.

execute(List<? extends BaseToken>) - Method in class org.apache.ctakes.padtermspotter.fsm.pad.machine.SubSectionPadIdFSM

execute(List<?>) - Method in class org.apache.ctakes.smokingstatus.machine.NegationFSM

Executes the finite state machines.

exists(File) - Static method in class org.apache.ctakes.preprocessor.test.TestDriver

exit() - Method in class org.apache.ctakes.core.fsm.state.NamedState

exit() - Method in class org.apache.ctakes.core.fsm.state.NonTerminalEndState

exit() - Method in class org.apache.ctakes.drugner.fsm.states.util.IndentStartState

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.ArgumentOrderFeatureExtractor

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.DependencyPathFeaturesExtractor

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.DependencyTreeFeaturesExtractor

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.EntitySpanFeatureExtractor

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.NamedEntityFeaturesExtractor

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.PartOfSpeechFeaturesExtractor

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.PhraseChunkingExtractor

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.PrepositionFeatureExtractor

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.PunctuationFeatureExtractor

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in interface org.apache.ctakes.relationextractor.ae.features.RelationFeaturesExtractor

Extract features for the pair of named entity mentions.

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.TokenFeaturesExtractor

extractForNode(JCas, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.relationextractor.ae.features.DependencyTreeFeaturesExtractor

ExtractionPrepAnnotator - Class in org.apache.ctakes.clinicalpipeline.ae

UIMA annotator that prepares the CAS for output - performs some (final) updates to the CAS

ExtractionPrepAnnotator() - Constructor for class org.apache.ctakes.clinicalpipeline.ae.ExtractionPrepAnnotator

extractPathEnclosedTree(TreebankNode, TreebankNode, JCas) - Static method in class org.apache.ctakes.constituency.parser.treekernel.TreeExtractor

extractPathTree(TreebankNode, TreebankNode) - Static method in class org.apache.ctakes.constituency.parser.treekernel.TreeExtractor

extractPhraseHeadByTreenode(JCas, List<TreebankNode>) - Method in class org.apache.ctakes.relationextractor.ae.features.PhraseChunkingExtractor