A B C D E F G H I J K L M N O P Q R S T U V W X

N

NamedEntityContextAnalyzer - Class in org.apache.ctakes.necontexts

This context analyzer provides code that is shared by the StatusContextAnalyzer and NegationContextAnalyzer which are both analyzers that examine the contexts surrounding named entity annotations.

NamedEntityContextAnalyzer() - Constructor for class org.apache.ctakes.necontexts.NamedEntityContextAnalyzer

NamedEntityContextAnalyzer - Class in org.apache.ctakes.smokingstatus.context

This context analyzer provides code that is shared by the StatusContextAnalyzer and NegationContextAnalyzer which are both analyzers that examine the contexts surrounding named entity annotations.

NamedEntityContextAnalyzer() - Constructor for class org.apache.ctakes.smokingstatus.context.NamedEntityContextAnalyzer

NamedEntityContextHitConsumer - Class in org.apache.ctakes.necontexts

NamedEntityContextHitConsumer() - Constructor for class org.apache.ctakes.necontexts.NamedEntityContextHitConsumer

NamedEntityFeaturesExtractor - Class in org.apache.ctakes.relationextractor.ae.features

NamedEntityFeaturesExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.NamedEntityFeaturesExtractor

NamedEntityFeaturesExtractorTest - Class in org.apache.ctakes.relationextractor.ae

NamedEntityFeaturesExtractorTest() - Constructor for class org.apache.ctakes.relationextractor.ae.NamedEntityFeaturesExtractorTest

NamedEntityLookupConsumerImpl - Class in org.apache.ctakes.dictionary.lookup.ae

NamedEntityLookupConsumerImpl(UimaContext, Properties, int) - Constructor for class org.apache.ctakes.dictionary.lookup.ae.NamedEntityLookupConsumerImpl

NamedEntityLookupConsumerImpl(UimaContext, Properties) - Constructor for class org.apache.ctakes.dictionary.lookup.ae.NamedEntityLookupConsumerImpl

NamedState - Class in org.apache.ctakes.core.fsm.state

Used mainly for aiding the debugging process.

NamedState(String) - Constructor for class org.apache.ctakes.core.fsm.state.NamedState

namesExpectedResults - Variable in class org.apache.ctakes.core.ae.TokenizerAnnotatorPTBTests

nameStartingWithApostrophe - Static variable in class org.apache.ctakes.core.nlp.tokenizer.TokenizerPTB

namesTest - Variable in class org.apache.ctakes.core.ae.TokenizerAnnotatorPTBTests

NE - Static variable in class org.apache.ctakes.coreference.util.CorefConsts

NE_CERTAINTY_NEGATED - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST

NE_CERTAINTY_POSITIVE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST

NE_CONDITIONAL_FALSE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST

NE_CONDITIONAL_TRUE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST

ne_coref_feats - Static variable in class org.apache.ctakes.coreference.util.FeatureVector

NE_DIAG_STATUS_CONFIRMED - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST

NE_DIAG_STATUS_FAM_HISTORY_OF - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST

NE_DIAG_STATUS_HISTORY_OF - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST

NE_DIAG_STATUS_PROBABLE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST

NE_DISCOVERY_TECH_DICT_LOOKUP - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST

NE_DISCOVERY_TECH_GOLD_ANNOTATION - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST

NE_GENERIC_FALSE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST

NE_GENERIC_TRUE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST

NE_POLARITY_NEGATION_ABSENT - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST

NE_POLARITY_NEGATION_PRESENT - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST

NE_TYPE_ID_ANATOMICAL_SITE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST

NE_TYPE_ID_DISORDER - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST

NE_TYPE_ID_DRUG - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST

NE_TYPE_ID_FINDING - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST

NE_TYPE_ID_PROCEDURE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST

NE_TYPE_ID_UNKNOWN - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST

NE_UNCERTAINTY_ABSENT - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST

NE_UNCERTAINTY_PRESENT - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST

NEDIST - Static variable in class org.apache.ctakes.coreference.util.CorefConsts

NegateCondition - Class in org.apache.ctakes.core.fsm.condition

NegateCondition(Condition) - Constructor for class org.apache.ctakes.core.fsm.condition.NegateCondition

NEGATED_STATUS - Static variable in class org.apache.ctakes.padtermspotter.fsm.output.SubSectionIndicator

NEGATION_IND_FSM_CLASS - Static variable in class org.apache.ctakes.drugner.ae.impl.NegContextInitializerImpl

Specifies the NegationIndicatorFSMClass that needs to be used

NegationAnnotatorTests - Class in org.apache.ctakes.necontexts

NegationAnnotatorTests() - Constructor for class org.apache.ctakes.necontexts.NegationAnnotatorTests

NegationContextAnalyzer - Class in org.apache.ctakes.necontexts.negation

NegationContextAnalyzer() - Constructor for class org.apache.ctakes.necontexts.negation.NegationContextAnalyzer

NegationContextAnalyzer - Class in org.apache.ctakes.smokingstatus.context.negation

NegationContextAnalyzer() - Constructor for class org.apache.ctakes.smokingstatus.context.negation.NegationContextAnalyzer

NegationContextHitConsumer - Class in org.apache.ctakes.necontexts.negation

NegationContextHitConsumer() - Constructor for class org.apache.ctakes.necontexts.negation.NegationContextHitConsumer

NegationFSM - Class in org.apache.ctakes.core.fsm.machine

Uses one or more finite state machines to detect dates in the given input of tokens.

NegationFSM() - Constructor for class org.apache.ctakes.core.fsm.machine.NegationFSM

Constructor

NegationFSM - Class in org.apache.ctakes.smokingstatus.machine

Uses one or more finite state machines to detect dates in the given input of tokens.

NegationFSM() - Constructor for class org.apache.ctakes.smokingstatus.machine.NegationFSM

Constructor

NegationIndicator - Class in org.apache.ctakes.core.fsm.output

NegationIndicator(int, int) - Constructor for class org.apache.ctakes.core.fsm.output.NegationIndicator

NegativeContextAnalyzerImpl - Class in org.apache.ctakes.padtermspotter.impl

NegativeContextAnalyzerImpl() - Constructor for class org.apache.ctakes.padtermspotter.impl.NegativeContextAnalyzerImpl

NegativeContextHitConsumerImpl - Class in org.apache.ctakes.padtermspotter.impl

NegativeContextHitConsumerImpl() - Constructor for class org.apache.ctakes.padtermspotter.impl.NegativeContextHitConsumerImpl

negativeSign - Static variable in class org.apache.ctakes.core.fsm.adapters.IntegerTokenAdapter

negativeSign - Static variable in class org.apache.ctakes.core.fsm.token.adapter.IntegerTokenAdapter

NegContextInitializerImpl - Class in org.apache.ctakes.drugner.ae.impl

NegContextInitializerImpl() - Constructor for class org.apache.ctakes.drugner.ae.impl.NegContextInitializerImpl

NegDxIndicatorFSM - Class in org.apache.ctakes.padtermspotter.fsm.pad.machine

Uses one or more finite state machines to detect dates in the given input of tokens.

NegDxIndicatorFSM() - Constructor for class org.apache.ctakes.padtermspotter.fsm.pad.machine.NegDxIndicatorFSM

Constructor

NegIndicatorFSM - Class in org.apache.ctakes.drugner.fsm.machines.util

Uses one or more finite state machines to detect dates in the given input of tokens.

NegIndicatorFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.util.NegIndicatorFSM

Constructor

NEMarkable - Class in org.apache.ctakes.coreference.type

Updated by JCasGen Tue Apr 09 11:42:44 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml

NEMarkable() - Constructor for class org.apache.ctakes.coreference.type.NEMarkable

Never called.

NEMarkable(int, TOP_Type) - Constructor for class org.apache.ctakes.coreference.type.NEMarkable

Internal - constructor used by generator

NEMarkable(JCas) - Constructor for class org.apache.ctakes.coreference.type.NEMarkable

NEMarkable(JCas, int, int) - Constructor for class org.apache.ctakes.coreference.type.NEMarkable

NEMarkable_Type - Class in org.apache.ctakes.coreference.type

Updated by JCasGen Tue Apr 09 11:42:44 EDT 2013

NEMarkable_Type(JCas, Type) - Constructor for class org.apache.ctakes.coreference.type.NEMarkable_Type

initialize variables to correspond with Cas Type and Features

NEWLINE - Static variable in class org.apache.ctakes.core.nlp.tokenizer.TokenizerHelper

NewlineToken - Class in org.apache.ctakes.typesystem.type.syntax

Differentiates a token as being a newline rather than a punctuation, symbol, contraction, word, or number.

NewlineToken() - Constructor for class org.apache.ctakes.typesystem.type.syntax.NewlineToken

Never called.

NewlineToken(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.NewlineToken

Internal - constructor used by generator

NewlineToken(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.NewlineToken

NewlineToken(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.NewlineToken

NewlineToken_Type - Class in org.apache.ctakes.typesystem.type.syntax

Differentiates a token as being a newline rather than a punctuation, symbol, contraction, word, or number.

NewlineToken_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.NewlineToken_Type

initialize variables to correspond with Cas Type and Features

NewlineTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters

Adapts JCas token annotation to interface expected by the Context Dependent Tokenizer.

NewlineTokenAdapter(NewlineToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.NewlineTokenAdapter

nextID - Static variable in class org.apache.ctakes.coreference.ae.MipacqMarkableCreator

nextX(TreebankNode) - Static method in class org.apache.ctakes.coreference.util.HobbsTreeNavigator

ngrams - Variable in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator

NO_ANNOTATION_TYPE_SPECIFIED - Static variable in class org.apache.ctakes.drugner.ae.DrugMentionAnnotator

NO_ANNOTATION_TYPE_SPECIFIED - Static variable in class org.apache.ctakes.padtermspotter.ae.PADHitAnnotator

NO_RELATION_CATEGORY - Static variable in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

NO_SPLIT - Static variable in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes

Constant indicates no sentence split.

NO_WINDOW_SIZE_SPECIFIED - Static variable in class org.apache.ctakes.drugner.ae.DrugMentionAnnotator

NO_WINDOW_SIZE_SPECIFIED - Static variable in class org.apache.ctakes.padtermspotter.ae.PADHitAnnotator

NOCHANGE - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken

NOCHANGE_STATUS - Static variable in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement

nodeMarkable(JCas, int, int) - Static method in class org.apache.ctakes.coreference.util.MarkableTreeUtils

NominalAttributeValue - Class in org.apache.ctakes.smokingstatus.type.libsvm

Updated by JCasGen Tue Apr 09 11:47:03 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-smoking-status/src/main/resources/org/apache/ctakes/smokingstatus/types/TypeSystem.xml

NominalAttributeValue() - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue

Never called.

NominalAttributeValue(int, TOP_Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue

Internal - constructor used by generator

NominalAttributeValue(JCas) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue

NominalAttributeValue(JCas, int, int) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue

NominalAttributeValue_Type - Class in org.apache.ctakes.smokingstatus.type.libsvm

Updated by JCasGen Tue Apr 09 11:47:04 EDT 2013

NominalAttributeValue_Type(JCas, Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue_Type

initialize variables to correspond with Cas Type and Features

NonIndicator - Class in org.apache.ctakes.drugner.fsm.output.util

NonIndicator(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.util.NonIndicator

NonIndicatorFSM - Class in org.apache.ctakes.drugner.fsm.machines.util

Uses one or more finite state machines to detect dates in the given input of tokens.

NonIndicatorFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.util.NonIndicatorFSM

Constructor

NonSmokerNamedEntityAnnotation - Class in org.apache.ctakes.smokingstatus.type

Updated by JCasGen Tue Apr 09 11:47:02 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-smoking-status/src/main/resources/org/apache/ctakes/smokingstatus/types/TypeSystem.xml

NonSmokerNamedEntityAnnotation() - Constructor for class org.apache.ctakes.smokingstatus.type.NonSmokerNamedEntityAnnotation

Never called.

NonSmokerNamedEntityAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.smokingstatus.type.NonSmokerNamedEntityAnnotation

Internal - constructor used by generator

NonSmokerNamedEntityAnnotation(JCas) - Constructor for class org.apache.ctakes.smokingstatus.type.NonSmokerNamedEntityAnnotation

NonSmokerNamedEntityAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.smokingstatus.type.NonSmokerNamedEntityAnnotation

NonSmokerNamedEntityAnnotation_Type - Class in org.apache.ctakes.smokingstatus.type

Updated by JCasGen Tue Apr 09 11:47:02 EDT 2013

NonSmokerNamedEntityAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.smokingstatus.type.NonSmokerNamedEntityAnnotation_Type

initialize variables to correspond with Cas Type and Features

NonSmokerNamedEntityLookupConsumerImpl - Class in org.apache.ctakes.smokingstatus.lookup.ae

copied from edu.may.bmi.uima.lookup.ae.NamedEntityLookupConsumerImpl in the "Dictionary Lookup" project to use "NonSmokerNamedEntityAnnotation" instead of NamedEntityAnnotation

NonSmokerNamedEntityLookupConsumerImpl(UimaContext, Properties) - Constructor for class org.apache.ctakes.smokingstatus.lookup.ae.NonSmokerNamedEntityLookupConsumerImpl

NonTerminalConsumer - Interface in org.apache.ctakes.core.cc

Extends the CasConsumer interface to provide a method for getting output in XML form.

NonTerminalEndState - Class in org.apache.ctakes.core.fsm.state

NonTerminalEndState(String) - Constructor for class org.apache.ctakes.core.fsm.state.NonTerminalEndState

normalizedDistance(String, String) - Static method in class org.apache.ctakes.coreference.util.EditDistance

NormalizedFilesInDirectoryCasConsumer - Class in org.apache.ctakes.core.cc

For each CAS a local file with the document text is written to a directory specifed by a parameter.

NormalizedFilesInDirectoryCasConsumer() - Constructor for class org.apache.ctakes.core.cc.NormalizedFilesInDirectoryCasConsumer

NP - Class in org.apache.ctakes.typesystem.type.syntax

A noun phrase Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.NP Updated by JCasGen Tue Apr 09 11:44:39 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-pad-term-spotter/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml

NP() - Constructor for class org.apache.ctakes.typesystem.type.syntax.NP

Never called.

NP(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.NP

Internal - constructor used by generator

NP(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.NP

NP(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.NP

NP_Type - Class in org.apache.ctakes.typesystem.type.syntax

A noun phrase Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.NP Updated by JCasGen Tue Apr 09 11:44:39 EDT 2013

NP_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.NP_Type

initialize variables to correspond with Cas Type and Features

NullAnnotator - Class in org.apache.ctakes.core.ae

This annotator does nothing.

NullAnnotator() - Constructor for class org.apache.ctakes.core.ae.NullAnnotator

NUM_FIRST - Static variable in interface org.apache.ctakes.core.fsm.token.WordToken

NUM_FIRST - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token

NUM_LAST - Static variable in interface org.apache.ctakes.core.fsm.token.WordToken

NUM_LAST - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token

NUM_MIDDLE - Static variable in interface org.apache.ctakes.core.fsm.token.WordToken

NUM_MIDDLE - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token

NUM_NONE - Static variable in interface org.apache.ctakes.core.fsm.token.WordToken

NUM_NONE - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token

number(Markable) - Method in class org.apache.ctakes.coreference.util.AttributeCalculator

NumberCondition - Class in org.apache.ctakes.core.fsm.condition

NumberCondition() - Constructor for class org.apache.ctakes.core.fsm.condition.NumberCondition

numberOfColumns - Variable in class org.apache.ctakes.padtermspotter.cr.RadiologyRecordsCollectionReader

NumberToken - Interface in org.apache.ctakes.core.fsm.token

NumberTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters

Adapts JCas token annotation to interface expected by the Context Dependent Tokenizer.

NumberTokenAdapter(NumToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.NumberTokenAdapter

NumberTokenAdapter - Class in org.apache.ctakes.core.fsm.token.adapter

NumberTokenAdapter(Token) - Constructor for class org.apache.ctakes.core.fsm.token.adapter.NumberTokenAdapter

NumericAttributeValue - Class in org.apache.ctakes.smokingstatus.type.libsvm

Corresponds to the ARFF numeric attributes.

NumericAttributeValue() - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.NumericAttributeValue

Never called.

NumericAttributeValue(int, TOP_Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.NumericAttributeValue

Internal - constructor used by generator

NumericAttributeValue(JCas) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.NumericAttributeValue

NumericAttributeValue(JCas, int, int) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.NumericAttributeValue

NumericAttributeValue_Type - Class in org.apache.ctakes.smokingstatus.type.libsvm

Corresponds to the ARFF numeric attributes.

NumericAttributeValue_Type(JCas, Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.NumericAttributeValue_Type

initialize variables to correspond with Cas Type and Features

numNgrams(Markable) - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator

NUMTHREADS - Static variable in class org.apache.ctakes.coreference.treekernel.training.LinearKernelMatrixWriter

NUMTHREADS - Static variable in class org.apache.ctakes.coreference.treekernel.training.TreeKernelTrainer

NumToken - Class in org.apache.ctakes.typesystem.type.syntax

Differentiates a token as being a number rather than a punctuation, symbol, newline, word, or contraction.

NumToken() - Constructor for class org.apache.ctakes.typesystem.type.syntax.NumToken

Never called.

NumToken(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.NumToken

Internal - constructor used by generator

NumToken(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.NumToken

NumToken(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.NumToken

NumToken_Type - Class in org.apache.ctakes.typesystem.type.syntax

Differentiates a token as being a number rather than a punctuation, symbol, newline, word, or contraction.

NumToken_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.NumToken_Type

initialize variables to correspond with Cas Type and Features

numVecs - Variable in class org.apache.ctakes.coreference.ae.MipacqMarkablePairGenerator