A B C D E F G H I L M N O P R S T U V W X

A

ALLFILELOC - Variable in class org.apache.ctakes.relationextractor.data.Splitter

ANNOTATOR_CLASSES - Static variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation

arg1begin - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.HashableArguments

arg1end - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.HashableArguments

arg2begin - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.HashableArguments

arg2end - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.HashableArguments

ArgumentInfo - Class in org.apache.ctakes.relationextractor.knowtator

Information about a relation argument.

ArgumentOrderFeatureExtractor - Class in org.apache.ctakes.relationextractor.ae.features

Features that indicate the order of the arguments (e.g.

ArgumentOrderFeatureExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.ArgumentOrderFeatureExtractor

B

Baseline1DegreeOfRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae.baselines

Annotated degree_of relation in sentences containing a single entity mention of a valid degree_of type and a single modifier.

Baseline1DegreeOfRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.baselines.Baseline1DegreeOfRelationExtractorAnnotator

Baseline1EntityMentionPairRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae.baselines

Annotate location_of relation between two entities in sentences containing exactly two entities (where the entities are of the correct types).

Baseline1EntityMentionPairRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.baselines.Baseline1EntityMentionPairRelationExtractorAnnotator

Baseline2DegreeOfRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae.baselines

Annotated degree_of relation between two entities in sentences with multiple modifiers (arg2) and a single legitimate degree_of arg1 (i.e.

Baseline2DegreeOfRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.baselines.Baseline2DegreeOfRelationExtractorAnnotator

Baseline2EntityMentionPairRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae.baselines

Annotate location_of relation between two entities in sentences with multiple anatomical sites and a single legitimate location_of arg2.

Baseline2EntityMentionPairRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.baselines.Baseline2EntityMentionPairRelationExtractorAnnotator

Baseline3DegreeOfRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae.baselines

This baseline links each modifier with the closest entity of a type that's suitable for degree_of, as long as there is no intervening modifier.

Baseline3DegreeOfRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.baselines.Baseline3DegreeOfRelationExtractorAnnotator

Baseline3EntityMentionPairRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae.baselines

This baseline links each anatomical site with the closest entity of a type that's suitable for location_of, as long as there is no intervening anatomical site.

Baseline3EntityMentionPairRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.baselines.Baseline3EntityMentionPairRelationExtractorAnnotator

Baseline4DegreeOfRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae.baselines

Annotate degree_of relation between two entities whenever they are enclosed within the same noun phrse.

Baseline4DegreeOfRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.baselines.Baseline4DegreeOfRelationExtractorAnnotator

Baseline4EntityMentionPairRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae.baselines

Annotate location_of relation between two entities whenever they are enclosed within the same noun phrse.

Baseline4EntityMentionPairRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.baselines.Baseline4EntityMentionPairRelationExtractorAnnotator

BEST_PARAMETERS - Static variable in class org.apache.ctakes.relationextractor.eval.ModifierExtractorEvaluation

BEST_PARAMETERS - Static variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation

C

CategoricalDistribution - Class in org.apache.ctakes.relationextractor.data

Class for generating samples from a three dimensional Categorical distribution.

category - Variable in class org.apache.ctakes.relationextractor.knowtator.RelationInfo

classify(List<Feature>) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline1DegreeOfRelationExtractorAnnotator

classify(List<Feature>) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline1EntityMentionPairRelationExtractorAnnotator

classify(List<Feature>) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline2DegreeOfRelationExtractorAnnotator

classify(List<Feature>) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline2EntityMentionPairRelationExtractorAnnotator

classify(List<Feature>) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline3DegreeOfRelationExtractorAnnotator

classify(List<Feature>) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline3EntityMentionPairRelationExtractorAnnotator

classify(List<Feature>) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline4EntityMentionPairRelationExtractorAnnotator

classify(List<Feature>) - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

Predict an outcome given a set of features.

classifyBothDirections - Variable in class org.apache.ctakes.relationextractor.pipelines.TreeFeatureConsumer

coin - Variable in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

collectionProcessComplete() - Method in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator

collectionProcessComplete() - Method in class org.apache.ctakes.relationextractor.pipelines.TreeFeatureConsumer

compareTo(RelationExtractorEvaluation.HashableArguments) - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.HashableArguments

configurationParameters - Variable in class org.apache.ctakes.relationextractor.eval.ParameterSettings

Constants - Class in org.apache.ctakes.relationextractor.data

Various global settings.

Constants() - Constructor for class org.apache.ctakes.relationextractor.data.Constants

createDirectories() - Method in class org.apache.ctakes.relationextractor.data.Splitter

createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.relationextractor.ae.DegreeOfRelationExtractorAnnotator

createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.relationextractor.ae.LocationOfRelationExtractorAnnotator

createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

Create a UIMA relation type based on arguments and the relation label.

D

dataWriterClass - Variable in class org.apache.ctakes.relationextractor.eval.ParameterSettings

DegreeOfRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae

Identifies Degree_Of relations between EventMentions and Modifiers.

DegreeOfRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.DegreeOfRelationExtractorAnnotator

DependencyParseUtils - Class in org.apache.ctakes.relationextractor.ae.features

DependencyParseUtils() - Constructor for class org.apache.ctakes.relationextractor.ae.features.DependencyParseUtils

DependencyPathFeaturesExtractor - Class in org.apache.ctakes.relationextractor.ae.features

DependencyPathFeaturesExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.DependencyPathFeaturesExtractor

DependencyTreeFeaturesExtractor - Class in org.apache.ctakes.relationextractor.ae.features

DependencyTreeFeaturesExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.DependencyTreeFeaturesExtractor

DEVLOC - Variable in class org.apache.ctakes.relationextractor.data.Splitter

displayContext - Variable in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorConsumer

displayEntities - Variable in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorConsumer

dumpDependencyRelations(JCas, Annotation) - Static method in class org.apache.ctakes.relationextractor.ae.features.DependencyParseUtils

E

end - Variable in class org.apache.ctakes.relationextractor.knowtator.Span

entityMentionCount - Variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator

entityMentionPairCount - Variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator

entityMentionPairTypes - Variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator

EntitySpanFeatureExtractor - Class in org.apache.ctakes.relationextractor.ae.features

Features that indicate whether both arguments are contained within an NP.

EntitySpanFeatureExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.EntitySpanFeatureExtractor

equals(Object) - Method in class org.apache.ctakes.relationextractor.eval.ParameterSettings

equals(Object) - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.HashableArguments

equals(Object) - Method in class org.apache.ctakes.relationextractor.knowtator.RelationInfo

equals(Object) - Method in class org.apache.ctakes.relationextractor.knowtator.Span

evaluate(SHARPXMI.EvaluationOptions, ParameterSettings, List<ParameterSettings>, Function<ParameterSettings, T>) - Static method in class org.apache.ctakes.relationextractor.eval.SHARPXMI

expandToNP(JCas, IdentifiedAnnotation) - Static method in class org.apache.ctakes.relationextractor.ae.IdentifiedAnnotationExpander

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.ArgumentOrderFeatureExtractor

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.DependencyPathFeaturesExtractor

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.DependencyTreeFeaturesExtractor

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.EntitySpanFeatureExtractor

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.FlatTreeFeatureExtractor

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.NamedEntityFeaturesExtractor

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.PartOfSpeechFeaturesExtractor

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.PETFeatureExtractor

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.PhraseChunkingExtractor

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.PrepositionFeatureExtractor

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.PunctuationFeatureExtractor

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in interface org.apache.ctakes.relationextractor.ae.features.RelationFeaturesExtractor

Extract features for the pair of named entity mentions.

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.TokenFeaturesExtractor

extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.TreeFragmentFeatureExtractor

extract(JCas, IdentifiedAnnotation, IDictionary) - Static method in class org.apache.ctakes.relationextractor.ae.features.WordNetFeatureExtractor

extractForNode(JCas, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.relationextractor.ae.features.DependencyTreeFeaturesExtractor

F

findAnnotationHead(JCas, Annotation) - Static method in class org.apache.ctakes.relationextractor.ae.features.DependencyParseUtils

Finds the head word within a given annotation span

FlatTreeFeatureExtractor - Class in org.apache.ctakes.relationextractor.ae.features

FlatTreeFeatureExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.FlatTreeFeatureExtractor

G

generateXMI(SHARPXMI.Options) - Static method in class org.apache.ctakes.relationextractor.eval.SHARPXMI

getAllowSmallerSystemArguments() - Method in interface org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.Options

getAllTextFiles(File) - Static method in class org.apache.ctakes.relationextractor.eval.SHARPXMI

getArg1() - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator.IdentifiedAnnotationPair

getArg2() - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator.IdentifiedAnnotationPair

getBatchesDirectory() - Method in interface org.apache.ctakes.relationextractor.eval.SHARPXMI.Options

getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline1DegreeOfRelationExtractorAnnotator

getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline1EntityMentionPairRelationExtractorAnnotator

getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline2DegreeOfRelationExtractorAnnotator

getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline2EntityMentionPairRelationExtractorAnnotator

getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline3DegreeOfRelationExtractorAnnotator

getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline3EntityMentionPairRelationExtractorAnnotator

getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline4DegreeOfRelationExtractorAnnotator

getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline4EntityMentionPairRelationExtractorAnnotator

getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.DegreeOfRelationExtractorAnnotator

getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.LocationOfRelationExtractorAnnotator

getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

Selects the relevant mentions/annotations within a covering annotation for relation identification/extraction.

getCollectionReader(List<File>) - Method in class org.apache.ctakes.relationextractor.eval.SHARPXMI.Evaluation_ImplBase

getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline1EntityMentionPairRelationExtractorAnnotator

getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline2DegreeOfRelationExtractorAnnotator

getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline2EntityMentionPairRelationExtractorAnnotator

getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline3DegreeOfRelationExtractorAnnotator

getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline3EntityMentionPairRelationExtractorAnnotator

getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline4EntityMentionPairRelationExtractorAnnotator

getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.DegreeOfRelationExtractorAnnotator

getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.LocationOfRelationExtractorAnnotator

getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

getCustomizedDictionary(String) - Static method in class org.apache.ctakes.relationextractor.pipelines.SelectiveRelationAnnotationViewer

Read comma separate file containing target CUIs.

getDescription(Object...) - Static method in class org.apache.ctakes.relationextractor.ae.ModifierExtractorAnnotator

getDevTextFiles(File) - Static method in class org.apache.ctakes.relationextractor.eval.SHARPXMI

getDictionary() - Static method in class org.apache.ctakes.relationextractor.ae.features.WordNetUtils

Initialize WordNet dictionary.

getDistance(JCas, RelationExtractorAnnotator.IdentifiedAnnotationPair) - Static method in class org.apache.ctakes.relationextractor.ae.baselines.Utils

Calculate the distance (in tokens) between two identified annotations.

getEnclosingNP(JCas, IdentifiedAnnotation) - Static method in class org.apache.ctakes.relationextractor.ae.IdentifiedAnnotationExpander

getEntityMentions(Document) - Static method in class org.apache.ctakes.relationextractor.knowtator.XMLReader

Get spans of named entity annotations indexed on knowtator mention id

getEntityStats(String) - Static method in class org.apache.ctakes.relationextractor.data.Stats

getEntityTypes(Document) - Static method in class org.apache.ctakes.relationextractor.knowtator.XMLReader

Type of each named entity indexed on mention ids

getEvaluteOn() - Method in interface org.apache.ctakes.relationextractor.eval.SHARPXMI.EvaluationOptions

getFeatureExtractors() - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

Defines the list of feature extractors used by the classifier.

getGenerateXMI() - Method in interface org.apache.ctakes.relationextractor.eval.SHARPXMI.Options

getGridSearch() - Method in interface org.apache.ctakes.relationextractor.eval.SHARPXMI.EvaluationOptions

getHeadWord(String) - Static method in class org.apache.ctakes.relationextractor.ae.features.WordNetUtils

A simple way to get the head word of a phrase.

getHyperHypernyms(IDictionary, String, String, boolean) - Static method in class org.apache.ctakes.relationextractor.ae.features.WordNetUtils

getHypernyms(IDictionary, String, String, boolean) - Static method in class org.apache.ctakes.relationextractor.ae.features.WordNetUtils

Retrieve a set of hypernyms for a word.

getIgnoreImpossibleGoldRelations() - Method in interface org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.Options

getNext(JCas) - Method in class org.apache.ctakes.relationextractor.eval.XMIReader

getNounPhrases(JCas, Sentence) - Static method in class org.apache.ctakes.relationextractor.ae.baselines.Utils

Get all noun phrases in a sentence.

getOntologyConceptCodes(IdentifiedAnnotation) - Static method in class org.apache.ctakes.relationextractor.pipelines.SelectiveRelationAnnotationViewer

Get the CUIs, RxNorm codes specified for this entity.

getPathBetweenNodes(ConllDependencyNode, ConllDependencyNode) - Static method in class org.apache.ctakes.relationextractor.ae.features.DependencyParseUtils

Finds the path between two dependency nodes

getPathsToCommonAncestor(ConllDependencyNode, ConllDependencyNode) - Static method in class org.apache.ctakes.relationextractor.ae.features.DependencyParseUtils

Returns the paths from each node to the common ancestor between them

getPathToSentenceHead(ConllDependencyNode) - Static method in class org.apache.ctakes.relationextractor.ae.features.DependencyParseUtils

getPrintErrors() - Method in interface org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.Options

getProgress() - Method in class org.apache.ctakes.relationextractor.eval.XMIReader

getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

Looks up the arguments in the specified lookup table and converts the relation into a label for classification

getRelationClass() - Method in class org.apache.ctakes.relationextractor.ae.DegreeOfRelationExtractorAnnotator

getRelationClass() - Method in class org.apache.ctakes.relationextractor.ae.LocationOfRelationExtractorAnnotator

getRelationClass() - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

getRelations() - Method in interface org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.Options

getRelations(Document) - Static method in class org.apache.ctakes.relationextractor.knowtator.XMLReader

getRelationStats(String) - Static method in class org.apache.ctakes.relationextractor.data.Stats

getStems(String, String, IDictionary) - Static method in class org.apache.ctakes.relationextractor.ae.features.WordNetUtils

Get a list of possible stems.

getSynonyms(IDictionary, String, String, boolean) - Static method in class org.apache.ctakes.relationextractor.ae.features.WordNetUtils

Retrieve a set of synonyms for a word.

getTestOnCTakes() - Method in interface org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.Options

getTestTextFiles(File) - Static method in class org.apache.ctakes.relationextractor.eval.SHARPXMI

getTokenDistance(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Static method in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator

getTrainTextFiles(File) - Static method in class org.apache.ctakes.relationextractor.eval.SHARPXMI

getXMIDirectory() - Method in interface org.apache.ctakes.relationextractor.eval.SHARPXMI.Options

GOLD_VIEW_NAME - Static variable in class org.apache.ctakes.relationextractor.eval.PrintRelationStatistics

GOLD_VIEW_NAME - Static variable in class org.apache.ctakes.relationextractor.eval.SHARPXMI

GoldAnnotationAnalysisPipeline - Class in org.apache.ctakes.relationextractor.data

Pipeline for analyzing gold annotations.

GoldAnnotationAnalysisPipeline() - Constructor for class org.apache.ctakes.relationextractor.data.GoldAnnotationAnalysisPipeline

GoldAnnotationAnalysisPipeline.Options - Class in org.apache.ctakes.relationextractor.data

GoldAnnotationAnalysisPipeline.Options() - Constructor for class org.apache.ctakes.relationextractor.data.GoldAnnotationAnalysisPipeline.Options

GoldAnnotationStatsCalculator - Class in org.apache.ctakes.relationextractor.data

Count various stats such as token and relation counts based on the gold standard data.

GoldAnnotationStatsCalculator() - Constructor for class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator

goldViewName - Static variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator

H

hashCode() - Method in class org.apache.ctakes.relationextractor.eval.ParameterSettings

hashCode() - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.HashableArguments

hashCode() - Method in class org.apache.ctakes.relationextractor.knowtator.RelationInfo

hashCode() - Method in class org.apache.ctakes.relationextractor.knowtator.Span

hasNext() - Method in class org.apache.ctakes.relationextractor.eval.XMIReader

I

id1 - Variable in class org.apache.ctakes.relationextractor.knowtator.RelationInfo

id2 - Variable in class org.apache.ctakes.relationextractor.knowtator.RelationInfo

IdentifiedAnnotationExpander - Class in org.apache.ctakes.relationextractor.ae

IdentifiedAnnotationExpander() - Constructor for class org.apache.ctakes.relationextractor.ae.IdentifiedAnnotationExpander

initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.ae.ModifierExtractorAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator

initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.eval.XMIReader

initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.pipelines.SelectiveRelationAnnotationViewer.RelationExtractorPrinter

initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.pipelines.TreeFeatureConsumer

inputDirectory - Variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationAnalysisPipeline.Options

inputDirectory - Variable in class org.apache.ctakes.relationextractor.pipelines.RelationAnnotationViewer.Options

inputDirectory - Variable in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorPipeline.Options

inputDirectory - Variable in class org.apache.ctakes.relationextractor.pipelines.SelectiveRelationAnnotationViewer.Options

isEnclosed(RelationExtractorAnnotator.IdentifiedAnnotationPair, TreebankNode) - Static method in class org.apache.ctakes.relationextractor.ae.baselines.Utils

Is this pair of entities enclosed inside a noun phrase?

L

LocationOfRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae

Identifies Location_Of relations between EventMentions and AnatomicalSiteMentions.

LocationOfRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.LocationOfRelationExtractorAnnotator

M

main(String[]) - Static method in class org.apache.ctakes.relationextractor.data.CategoricalDistribution

main(String[]) - Static method in class org.apache.ctakes.relationextractor.data.GoldAnnotationAnalysisPipeline

main(String[]) - Static method in class org.apache.ctakes.relationextractor.data.Splitter

main(String[]) - Static method in class org.apache.ctakes.relationextractor.data.Stats

main(String[]) - Static method in class org.apache.ctakes.relationextractor.eval.ModifierExtractorEvaluation

main(String[]) - Static method in class org.apache.ctakes.relationextractor.eval.PrintRelationStatistics

main(String[]) - Static method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation

main(String[]) - Static method in class org.apache.ctakes.relationextractor.knowtator.RelationInfo

main(String[]) - Static method in class org.apache.ctakes.relationextractor.pipelines.RelationAnnotationViewer

main(String[]) - Static method in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorPipeline

main(String[]) - Static method in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorPipelineSingleCas

main(String[]) - Static method in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorTrain

main(String[]) - Static method in class org.apache.ctakes.relationextractor.pipelines.SelectiveRelationAnnotationViewer

main(String[]) - Static method in class org.apache.ctakes.relationextractor.pipelines.TreeFeatureConsumer

mipacDevXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants

mipacqAllXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants

mipacqTestXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants

mipacqTrainXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants

ModifierExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae

ModifierExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.ModifierExtractorAnnotator

ModifierExtractorEvaluation - Class in org.apache.ctakes.relationextractor.eval

ModifierExtractorEvaluation(File, ParameterSettings) - Constructor for class org.apache.ctakes.relationextractor.eval.ModifierExtractorEvaluation

ModifierExtractorEvaluation.OnlyGoldModifiers - Class in org.apache.ctakes.relationextractor.eval

Class that copies the manual Modifier annotations to the default CAS.

ModifierExtractorEvaluation.OnlyGoldModifiers() - Constructor for class org.apache.ctakes.relationextractor.eval.ModifierExtractorEvaluation.OnlyGoldModifiers

N

NamedEntityFeaturesExtractor - Class in org.apache.ctakes.relationextractor.ae.features

NamedEntityFeaturesExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.NamedEntityFeaturesExtractor

NO_RELATION_CATEGORY - Static variable in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

O

org.apache.ctakes.relationextractor.ae - package org.apache.ctakes.relationextractor.ae

org.apache.ctakes.relationextractor.ae.baselines - package org.apache.ctakes.relationextractor.ae.baselines

org.apache.ctakes.relationextractor.ae.features - package org.apache.ctakes.relationextractor.ae.features

org.apache.ctakes.relationextractor.data - package org.apache.ctakes.relationextractor.data

org.apache.ctakes.relationextractor.eval - package org.apache.ctakes.relationextractor.eval

org.apache.ctakes.relationextractor.knowtator - package org.apache.ctakes.relationextractor.knowtator

org.apache.ctakes.relationextractor.pipelines - package org.apache.ctakes.relationextractor.pipelines

OUTCOME1 - Variable in class org.apache.ctakes.relationextractor.data.CategoricalDistribution

OUTCOME2 - Variable in class org.apache.ctakes.relationextractor.data.CategoricalDistribution

OUTCOME3 - Variable in class org.apache.ctakes.relationextractor.data.CategoricalDistribution

outputDirectory - Variable in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorPipeline.Options

P

PARAM_CLASSIFY_BOTH_DIRECTIONS - Static variable in class org.apache.ctakes.relationextractor.pipelines.TreeFeatureConsumer

PARAM_FILES - Static variable in class org.apache.ctakes.relationextractor.eval.XMIReader

PARAM_OUTFILE - Static variable in class org.apache.ctakes.relationextractor.pipelines.TreeFeatureConsumer

PARAM_PROBABILITY_OF_KEEPING_A_NEGATIVE_EXAMPLE - Static variable in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

ParameterSettings - Class in org.apache.ctakes.relationextractor.eval

Holds a set of parameters for a relation extraction model

ParameterSettings(Class<? extends DataWriter<String>>, Object[], String[]) - Constructor for class org.apache.ctakes.relationextractor.eval.ParameterSettings

ParameterSettings(Class<? extends DataWriter<String>>, String[]) - Constructor for class org.apache.ctakes.relationextractor.eval.ParameterSettings

PartOfSpeechFeaturesExtractor - Class in org.apache.ctakes.relationextractor.ae.features

PartOfSpeechFeaturesExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.PartOfSpeechFeaturesExtractor

pathToString(LinkedList<ConllDependencyNode>) - Static method in class org.apache.ctakes.relationextractor.ae.features.DependencyParseUtils

This will convert a path into a string lexicalized at the end points with arc labels and POS tags in between

PETFeatureExtractor - Class in org.apache.ctakes.relationextractor.ae.features

PETFeatureExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.PETFeatureExtractor

PhraseChunkingExtractor - Class in org.apache.ctakes.relationextractor.ae.features

PhraseChunkingExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.PhraseChunkingExtractor

PrepositionFeatureExtractor - Class in org.apache.ctakes.relationextractor.ae.features

Features that indicate whether there is a preposition between the two arguments.

PrepositionFeatureExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.PrepositionFeatureExtractor

PrintRelationStatistics - Class in org.apache.ctakes.relationextractor.eval

PrintRelationStatistics() - Constructor for class org.apache.ctakes.relationextractor.eval.PrintRelationStatistics

PrintRelationStatistics.Options - Class in org.apache.ctakes.relationextractor.eval

PrintRelationStatistics.Options() - Constructor for class org.apache.ctakes.relationextractor.eval.PrintRelationStatistics.Options

probabilityOfKeepingANegativeExample - Variable in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

process(JCas) - Method in class org.apache.ctakes.relationextractor.ae.IdentifiedAnnotationExpander

process(JCas) - Method in class org.apache.ctakes.relationextractor.ae.ModifierExtractorAnnotator

process(JCas) - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

process(JCas) - Method in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator

process(JCas) - Method in class org.apache.ctakes.relationextractor.eval.ModifierExtractorEvaluation.OnlyGoldModifiers

process(JCas) - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.RemoveCTakesMentionsAndCopyGoldRelations

process(JCas) - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.RemoveSmallerEventMentions

process(JCas) - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.ReplaceCTakesMentionsWithGoldMentions

process(JCas) - Method in class org.apache.ctakes.relationextractor.eval.SHARPXMI.CopyDocumentTextToGoldView

process(JCas) - Method in class org.apache.ctakes.relationextractor.eval.SHARPXMI.DocumentIDAnnotator

process(JCas) - Method in class org.apache.ctakes.relationextractor.pipelines.RelationAnnotationViewer.RelationExtractorPrinter

process(JCas) - Method in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorConsumer

process(JCas) - Method in class org.apache.ctakes.relationextractor.pipelines.SelectiveRelationAnnotationViewer.RelationExtractorPrinter

process(JCas) - Method in class org.apache.ctakes.relationextractor.pipelines.TreeFeatureConsumer

PunctuationFeatureExtractor - Class in org.apache.ctakes.relationextractor.ae.features

Features that capture punctuation marks between the two arguments.

PunctuationFeatureExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.PunctuationFeatureExtractor

R

readOnlySharpRelations - Static variable in class org.apache.ctakes.relationextractor.data.Stats

RELATION_CLASSES - Static variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation

RelationAnnotationViewer - Class in org.apache.ctakes.relationextractor.pipelines

View the annotations obtained by running the relation extractor on clinical notes.

RelationAnnotationViewer() - Constructor for class org.apache.ctakes.relationextractor.pipelines.RelationAnnotationViewer

RelationAnnotationViewer.Options - Class in org.apache.ctakes.relationextractor.pipelines

RelationAnnotationViewer.Options() - Constructor for class org.apache.ctakes.relationextractor.pipelines.RelationAnnotationViewer.Options

RelationAnnotationViewer.RelationExtractorPrinter - Class in org.apache.ctakes.relationextractor.pipelines

RelationAnnotationViewer.RelationExtractorPrinter() - Constructor for class org.apache.ctakes.relationextractor.pipelines.RelationAnnotationViewer.RelationExtractorPrinter

relationArgumentDistance - Variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator

RelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae

RelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

RelationExtractorAnnotator.IdentifiedAnnotationPair - Class in org.apache.ctakes.relationextractor.ae

RelationExtractorAnnotator.IdentifiedAnnotationPair(IdentifiedAnnotation, IdentifiedAnnotation) - Constructor for class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator.IdentifiedAnnotationPair

RelationExtractorConsumer - Class in org.apache.ctakes.relationextractor.pipelines

This is a sample relation annotation consumer.

RelationExtractorConsumer() - Constructor for class org.apache.ctakes.relationextractor.pipelines.RelationExtractorConsumer

RelationExtractorEvaluation - Class in org.apache.ctakes.relationextractor.eval

RelationExtractorEvaluation(File, Class<? extends BinaryTextRelation>, Class<? extends RelationExtractorAnnotator>, ParameterSettings, boolean, boolean, boolean, boolean) - Constructor for class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation

An evaluation of a relation extractor.

RelationExtractorEvaluation(File, Class<? extends BinaryTextRelation>, Class<? extends RelationExtractorAnnotator>, ParameterSettings) - Constructor for class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation

RelationExtractorEvaluation.HashableArguments - Class in org.apache.ctakes.relationextractor.eval

This class is useful for mapping the spans of relation arguments to the relation's category.

RelationExtractorEvaluation.HashableArguments(int, int, int, int) - Constructor for class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.HashableArguments

RelationExtractorEvaluation.HashableArguments(Annotation, Annotation) - Constructor for class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.HashableArguments

RelationExtractorEvaluation.HashableArguments(BinaryTextRelation) - Constructor for class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.HashableArguments

RelationExtractorEvaluation.Options - Interface in org.apache.ctakes.relationextractor.eval

RelationExtractorEvaluation.RemoveCTakesMentionsAndCopyGoldRelations - Class in org.apache.ctakes.relationextractor.eval

Annotator that removes cTAKES mentions in the system view and copies relations from the gold view to the system view

RelationExtractorEvaluation.RemoveCTakesMentionsAndCopyGoldRelations() - Constructor for class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.RemoveCTakesMentionsAndCopyGoldRelations

RelationExtractorEvaluation.RemoveSmallerEventMentions - Class in org.apache.ctakes.relationextractor.eval

RelationExtractorEvaluation.RemoveSmallerEventMentions() - Constructor for class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.RemoveSmallerEventMentions

RelationExtractorEvaluation.ReplaceCTakesMentionsWithGoldMentions - Class in org.apache.ctakes.relationextractor.eval

Annotator that removes cTAKES Mentions and Modifiers from the system view, and copies over the manually annotated Mentions and Modifiers from the gold view.

RelationExtractorEvaluation.ReplaceCTakesMentionsWithGoldMentions() - Constructor for class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.ReplaceCTakesMentionsWithGoldMentions

RelationExtractorPipeline - Class in org.apache.ctakes.relationextractor.pipelines

A simple pipeline that runs relation extraction on all files in a directory and saves the resulting annotations as XMI files.

RelationExtractorPipeline() - Constructor for class org.apache.ctakes.relationextractor.pipelines.RelationExtractorPipeline

RelationExtractorPipeline.Options - Class in org.apache.ctakes.relationextractor.pipelines

RelationExtractorPipeline.Options() - Constructor for class org.apache.ctakes.relationextractor.pipelines.RelationExtractorPipeline.Options

RelationExtractorPipelineSingleCas - Class in org.apache.ctakes.relationextractor.pipelines

Run relation extraction AE on a single sentence.

RelationExtractorPipelineSingleCas() - Constructor for class org.apache.ctakes.relationextractor.pipelines.RelationExtractorPipelineSingleCas

RelationExtractorTrain - Class in org.apache.ctakes.relationextractor.pipelines

This class produces production models for the RelationExtractor module.

RelationExtractorTrain() - Constructor for class org.apache.ctakes.relationextractor.pipelines.RelationExtractorTrain

RelationFeaturesExtractor - Interface in org.apache.ctakes.relationextractor.ae.features

Define an interface for people to implement feature extractors.

RelationInfo - Class in org.apache.ctakes.relationextractor.knowtator

Information about a relation that includes the info about the relation's arguments.

relationTypes - Variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator

reportStats(HashMap<String, Integer>, int) - Static method in class org.apache.ctakes.relationextractor.data.Stats

role - Variable in class org.apache.ctakes.relationextractor.knowtator.ArgumentInfo

role1 - Variable in class org.apache.ctakes.relationextractor.knowtator.RelationInfo

role2 - Variable in class org.apache.ctakes.relationextractor.knowtator.RelationInfo

S

sample() - Method in class org.apache.ctakes.relationextractor.data.CategoricalDistribution

SelectiveRelationAnnotationViewer - Class in org.apache.ctakes.relationextractor.pipelines

View relation instances in xmi files.

SelectiveRelationAnnotationViewer() - Constructor for class org.apache.ctakes.relationextractor.pipelines.SelectiveRelationAnnotationViewer

SelectiveRelationAnnotationViewer.Options - Class in org.apache.ctakes.relationextractor.pipelines

SelectiveRelationAnnotationViewer.Options() - Constructor for class org.apache.ctakes.relationextractor.pipelines.SelectiveRelationAnnotationViewer.Options

SelectiveRelationAnnotationViewer.RelationExtractorPrinter - Class in org.apache.ctakes.relationextractor.pipelines

SelectiveRelationAnnotationViewer.RelationExtractorPrinter() - Constructor for class org.apache.ctakes.relationextractor.pipelines.SelectiveRelationAnnotationViewer.RelationExtractorPrinter

sentenceCount - Variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator

shareAllXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants

shareDevXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants

shareTestXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants

shareTrainXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants

sharpAllXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants

sharpDevXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants

sharpRelationsAll - Static variable in class org.apache.ctakes.relationextractor.data.Constants

sharpRelationsHighPriority - Static variable in class org.apache.ctakes.relationextractor.data.Constants

sharpRelationsLowPriority - Static variable in class org.apache.ctakes.relationextractor.data.Constants

sharpRelationsSelected - Static variable in class org.apache.ctakes.relationextractor.data.Constants

sharpTestXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants

sharpTrainXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants

SHARPXMI - Class in org.apache.ctakes.relationextractor.eval

SHARPXMI() - Constructor for class org.apache.ctakes.relationextractor.eval.SHARPXMI

SHARPXMI.CopyDocumentTextToGoldView - Class in org.apache.ctakes.relationextractor.eval

SHARPXMI.CopyDocumentTextToGoldView() - Constructor for class org.apache.ctakes.relationextractor.eval.SHARPXMI.CopyDocumentTextToGoldView

SHARPXMI.DocumentIDAnnotator - Class in org.apache.ctakes.relationextractor.eval

SHARPXMI.DocumentIDAnnotator() - Constructor for class org.apache.ctakes.relationextractor.eval.SHARPXMI.DocumentIDAnnotator

SHARPXMI.EvaluateOn - Enum in org.apache.ctakes.relationextractor.eval

SHARPXMI.Evaluation_ImplBase - Class in org.apache.ctakes.relationextractor.eval

SHARPXMI.Evaluation_ImplBase(File) - Constructor for class org.apache.ctakes.relationextractor.eval.SHARPXMI.Evaluation_ImplBase

SHARPXMI.EvaluationOptions - Interface in org.apache.ctakes.relationextractor.eval

SHARPXMI.Options - Interface in org.apache.ctakes.relationextractor.eval

Span - Class in org.apache.ctakes.relationextractor.knowtator

Represents span of a named entity

Span(int, int) - Constructor for class org.apache.ctakes.relationextractor.knowtator.Span

split() - Method in class org.apache.ctakes.relationextractor.data.Splitter

Splitter - Class in org.apache.ctakes.relationextractor.data

Randomly split a set of files in a directory into three sets: train, dev, and test.

Splitter(double, double) - Constructor for class org.apache.ctakes.relationextractor.data.Splitter

Specify percentages of the split.

Splitter(int, int, int) - Constructor for class org.apache.ctakes.relationextractor.data.Splitter

Specify the size of each set.

start - Variable in class org.apache.ctakes.relationextractor.knowtator.Span

Stats - Class in org.apache.ctakes.relationextractor.data

Calculate relation frequencies in a data set that consists of XML files exported from Knowtator.

Stats() - Constructor for class org.apache.ctakes.relationextractor.data.Stats

stats - Variable in class org.apache.ctakes.relationextractor.eval.ParameterSettings

systemViewName - Static variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator

T

targetRelationType - Static variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator

test(CollectionReader, File) - Method in class org.apache.ctakes.relationextractor.eval.ModifierExtractorEvaluation

test(CollectionReader, File) - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation

TESTLOC - Variable in class org.apache.ctakes.relationextractor.data.Splitter

tokenCount - Variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator

TokenFeaturesExtractor - Class in org.apache.ctakes.relationextractor.ae.features

TokenFeaturesExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.TokenFeaturesExtractor

toString() - Method in class org.apache.ctakes.relationextractor.eval.ParameterSettings

toString() - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.HashableArguments

toString() - Method in class org.apache.ctakes.relationextractor.knowtator.RelationInfo

toString() - Method in class org.apache.ctakes.relationextractor.knowtator.Span

toXMIFiles(SHARPXMI.Options, List<File>) - Static method in class org.apache.ctakes.relationextractor.eval.SHARPXMI

train(CollectionReader, File) - Method in class org.apache.ctakes.relationextractor.eval.ModifierExtractorEvaluation

train(CollectionReader, File) - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation

trainDirectory - Variable in class org.apache.ctakes.relationextractor.eval.PrintRelationStatistics.Options

trainingArguments - Variable in class org.apache.ctakes.relationextractor.eval.ParameterSettings

TRAINLOC - Variable in class org.apache.ctakes.relationextractor.data.Splitter

TreeFeatureConsumer - Class in org.apache.ctakes.relationextractor.pipelines

TreeFeatureConsumer() - Constructor for class org.apache.ctakes.relationextractor.pipelines.TreeFeatureConsumer

TreeFragmentFeatureExtractor - Class in org.apache.ctakes.relationextractor.ae.features

TreeFragmentFeatureExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.TreeFragmentFeatureExtractor

U

Utils - Class in org.apache.ctakes.relationextractor.ae.baselines

Utils() - Constructor for class org.apache.ctakes.relationextractor.ae.baselines.Utils

V

validate(SHARPXMI.EvaluationOptions) - Static method in class org.apache.ctakes.relationextractor.eval.SHARPXMI

validateDegreeOfArgumentTypes(RelationExtractorAnnotator.IdentifiedAnnotationPair) - Static method in class org.apache.ctakes.relationextractor.ae.baselines.Utils

Are entity types of the arguments valid for degree_of relation? The following are the valid combinations: degree-of(disease/disorder/2, modifier) degree-of(sign/symptom/3, modifier)

validateLocationOfArgumentTypes(RelationExtractorAnnotator.IdentifiedAnnotationPair) - Static method in class org.apache.ctakes.relationextractor.ae.baselines.Utils

Are entity types of the arguments valid for location_of relation? The following combinations are allowed: location-of(anatomical site/6, disorder/2) location-of(anatomical site/6, sign/symptom/3) location-of(anatomical site/6, procedure/5)

value - Variable in class org.apache.ctakes.relationextractor.knowtator.ArgumentInfo

valueOf(String) - Static method in enum org.apache.ctakes.relationextractor.eval.SHARPXMI.EvaluateOn

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.apache.ctakes.relationextractor.eval.SHARPXMI.EvaluateOn

Returns an array containing the constants of this enum type, in the order they are declared.

W

WordNetFeatureExtractor - Class in org.apache.ctakes.relationextractor.ae.features

Features that are based on WordNet.

WordNetFeatureExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.WordNetFeatureExtractor

wordNetPath - Static variable in class org.apache.ctakes.relationextractor.ae.features.WordNetUtils

WordNetUtils - Class in org.apache.ctakes.relationextractor.ae.features

This is a wrapper for the MIT WordNet inteface that simplifies basic operations such as retrieving synonyms and hypernyms for a word.

WordNetUtils() - Constructor for class org.apache.ctakes.relationextractor.ae.features.WordNetUtils

X

XMIReader - Class in org.apache.ctakes.relationextractor.eval

UIMA CollectionReader that reads in CASes from XMI files.

XMIReader() - Constructor for class org.apache.ctakes.relationextractor.eval.XMIReader

XMLReader - Class in org.apache.ctakes.relationextractor.knowtator

XMLReader() - Constructor for class org.apache.ctakes.relationextractor.knowtator.XMLReader

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