A C D E F G H I L M O P R S T U W X

A

addToIndexes(JCas, ArrayList<ConllDependencyNode>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility

AnnotationDepUtils - Class in org.apache.ctakes.dependency.parser.util

AnnotationDepUtils() - Constructor for class org.apache.ctakes.dependency.parser.util.AnnotationDepUtils

ANY_ADJECTIVE - Static variable in class org.apache.ctakes.dependency.parser.util.DependencyRegex

ANY_DEPREL - Static variable in class org.apache.ctakes.dependency.parser.util.DependencyRegex

ANY_NOUN - Static variable in class org.apache.ctakes.dependency.parser.util.DependencyRegex

ANY_POS - Static variable in class org.apache.ctakes.dependency.parser.util.DependencyRegex

ANY_TOKEN - Static variable in class org.apache.ctakes.dependency.parser.util.DependencyRegex

Static identifiers used to build Regex expressions

ANY_VERB - Static variable in class org.apache.ctakes.dependency.parser.util.DependencyRegex

append(DependencyRegex) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex

append(DEPNode[]) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex

append(ConllDependencyNode[]) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex

appendOptional(DependencyRegex) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex

appendOptional(DEPNode[]) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex

appendOptional(ConllDependencyNode[]) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex

C

classifier - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

ClearDependencyUtility - Class in org.apache.ctakes.dependency.parser.util

ClearDependencyUtility() - Constructor for class org.apache.ctakes.dependency.parser.util.ClearDependencyUtility

ClearNLPDependencyParserAE - Class in org.apache.ctakes.dependency.parser.ae

This class provides a UIMA wrapper for the CLEAR dependency parser.

ClearNLPDependencyParserAE() - Constructor for class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE

ClearNLPSemanticRoleLabelerAE - Class in org.apache.ctakes.dependency.parser.ae

This class provides a UIMA wrapper for the ClearNLP Semantic Role Labeler, which is available here.

ClearNLPSemanticRoleLabelerAE() - Constructor for class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

close() - Method in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader

compile(String) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex

compile(String, int) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex

convert(JCas, DEPTree, Sentence, List<BaseToken>) - Static method in class org.apache.ctakes.dependency.parser.util.ClearDependencyUtility

D

DEFAULT_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE

DEFAULT_PRED_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

DEFAULT_ROLE_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

DEFAULT_SRL_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

Delim - Class in org.apache.ctakes.dependency.parser.util

Delim() - Constructor for class org.apache.ctakes.dependency.parser.util.Delim

DEP_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors

DEPENDENCY_FILE_PARAM - Static variable in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader

"DependencyFile" is a required, single, string parameter that specifies the location of a data file that contains dependency data in it.

DependencyFileCollectionReader - Class in org.apache.ctakes.dependency.parser.cr

This collection reader reads in dependency tree training/test data in a tab- delimited format.

DependencyFileCollectionReader() - Constructor for class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader

DependencyNodeWriter - Class in org.apache.ctakes.dependency.parser

CasConsumer that writes a JCas (the current view) to an xml file

DependencyNodeWriter() - Constructor for class org.apache.ctakes.dependency.parser.DependencyNodeWriter

DependencyPath - Class in org.apache.ctakes.dependency.parser.util

DependencyPath() - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyPath

DependencyRegex - Class in org.apache.ctakes.dependency.parser.util

DependencyRegex(String, String) - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyRegex

DependencyRegex(DependencyPath, String) - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyRegex

DependencyRegex(String) - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyRegex

DependencyRegex(DEPNode[], int) - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyRegex

DependencyRegex(DEPNode[], int, String) - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyRegex

DependencyRegex(ConllDependencyNode[], int) - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyRegex

DependencyUtility - Class in org.apache.ctakes.dependency.parser.util

DependencyUtility() - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyUtility

distanceFromRoot(ConllDependencyNode) - Static method in class org.apache.ctakes.dependency.parser.util.AnnotationDepUtils

distanceFromRoot(SimpleTree) - Static method in class org.apache.ctakes.dependency.parser.util.AnnotationDepUtils

DN_ARC_A - Static variable in class org.apache.ctakes.dependency.parser.util.Delim

DN_ARC_B - Static variable in class org.apache.ctakes.dependency.parser.util.Delim

doesSubsume(Annotation, Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility

Checks if one annotation subsumes another

dumpDependencyGraph(Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility

dumpSRLOutput(Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.SRLUtility

E

ENG_LEMMATIZER_DATA_FILE - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE

equalCoverage(Annotation, Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.ClearDependencyUtility

Equality expressions to aid in converting between DepNodes and CAS objects

equalCoverage(Annotation, Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility

Equality expressions to aid in converting between DepNodes and CAS objects

F

find(String) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex

fromSet(Set<String>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyRegex

G

get() - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex

getCommonNode() - Method in class org.apache.ctakes.dependency.parser.util.DependencyPath

getDependencyNode(JCas, Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility

Returns the first ConllDependencyNode in the CAS w/ same begin and end as the given Annotation

getDependencyNodes(JCas, Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility

Returns the ConllDependencyNodes in the CAS w/ subsumed begins and ends

getLeftSibProgeny(ConllDependencyNode, List<ConllDependencyNode>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility

getLeftSibs(ConllDependencyNode, List<ConllDependencyNode>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility

getName() - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex

getNext(JCas) - Method in class org.apache.ctakes.dependency.parser.ae.util.XMIReader

getNext(CAS) - Method in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader

Some of the code in this method is based loosely on opennlp.tools.postag.POSEventCollector

getNominalHeadNode(JCas, Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility

Returns the first ConllDependencyNode in the CAS w/ same begin and end as the given Annotation

getNominalHeadNode(List<ConllDependencyNode>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility

Finds the head node out of a few ConllDependencyNodes.

getPath(List<ConllDependencyNode>, ConllDependencyNode, ConllDependencyNode) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility

Given a set of ConllDependencyNodes, find the path between two nodes

getPath(JCas, ConllDependencyNode, ConllDependencyNode) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility

Given a CAS, find the path between two nodes in a sentence

getPathEnclosedTree(SimpleTree, List<SimpleTree>, SimpleTree, SimpleTree) - Static method in class org.apache.ctakes.dependency.parser.util.AnnotationDepUtils

getPathToTop(JCas, ConllDependencyNode) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility

getPlaintextAggregateBuilder() - Static method in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors

Builds the plaintext prepreprocessing pipeline for ClearNLP

getProgeny(ConllDependencyNode, List<ConllDependencyNode>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility

getProgeny(List<ConllDependencyNode>, List<ConllDependencyNode>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility

getProgress() - Method in class org.apache.ctakes.dependency.parser.ae.util.XMIReader

getProgress() - Method in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader

getRightSibProgeny(ConllDependencyNode, List<ConllDependencyNode>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility

getRightSibs(ConllDependencyNode, List<ConllDependencyNode>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility

getSentence(JCas, Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility

Find the sentence in which an Annotation lives

getTokenizedAggregateBuilder() - Static method in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors

Builds the tokenized preprocessing pipeline for ClearNLP

getTokenizedInfPosAggregateBuilder() - Static method in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors

Builds the tokenizedInf preprocessing for ClearNLP

getTokenRelTreeString(JCas, List<ConllDependencyNode>, Annotation[], String[]) - Static method in class org.apache.ctakes.dependency.parser.util.AnnotationDepUtils

getTokenRelTreeString(JCas, List<ConllDependencyNode>, Annotation[], String[], boolean) - Static method in class org.apache.ctakes.dependency.parser.util.AnnotationDepUtils

getTokenTreeString(JCas, List<ConllDependencyNode>, Annotation[], String[], boolean) - Static method in class org.apache.ctakes.dependency.parser.util.AnnotationDepUtils

H

hasNext() - Method in class org.apache.ctakes.dependency.parser.ae.util.XMIReader

hasNext() - Method in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader

I

identifier - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

initialize(UimaContext) - Method in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE

initialize(UimaContext) - Method in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

initialize(UimaContext) - Method in class org.apache.ctakes.dependency.parser.ae.util.XMIReader

initialize() - Method in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader

initialize() - Method in class org.apache.ctakes.dependency.parser.DependencyNodeWriter

Read in configuration parameters

INPUT_FORMAT_PARAM - Static variable in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader

"InputFormat" is a optional, single, boolean parameter that determines whether or not the features associated with each word will be loaded into the CAS or not.

isCommonNode(ConllDependencyNode) - Method in class org.apache.ctakes.dependency.parser.util.DependencyPath

L

L_POS_DELIM - Static variable in class org.apache.ctakes.dependency.parser.util.Delim

L_REL_DELIM - Static variable in class org.apache.ctakes.dependency.parser.util.Delim

L_TOK_DELIM - Static variable in class org.apache.ctakes.dependency.parser.util.Delim

lemmatizer - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE

lemmatizerDataFile - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE

loadDescription(String) - Static method in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors

Simple method to load xml description and return an AnalysisEngineDescription object

logger - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE

logger - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

logger - Variable in class org.apache.ctakes.dependency.parser.util.ClearDependencyUtility

logger - Static variable in class org.apache.ctakes.dependency.parser.util.DependencyUtility

LVG_BASE_TOKEN_ANNOTATOR_PATH - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors

M

main(String[]) - Static method in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors

matcher(CharSequence) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex

matches(String) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex

modelFile - Variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors.Options

O

org.apache.ctakes.dependency.parser - package org.apache.ctakes.dependency.parser

org.apache.ctakes.dependency.parser.ae - package org.apache.ctakes.dependency.parser.ae

org.apache.ctakes.dependency.parser.ae.util - package org.apache.ctakes.dependency.parser.ae.util

org.apache.ctakes.dependency.parser.cr - package org.apache.ctakes.dependency.parser.cr

org.apache.ctakes.dependency.parser.util - package org.apache.ctakes.dependency.parser.util

outputRoot - Variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors.Options

P

PARAM_FILES - Static variable in class org.apache.ctakes.dependency.parser.ae.util.XMIReader

PARAM_LEMMATIZER_DATA_FILE - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE

PARAM_LEMMATIZER_DATA_FILE - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

PARAM_PARSER_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE

PARAM_PARSER_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

PARAM_PRED_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

PARAM_ROLE_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

PARAM_USE_LEMMATIZER - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE

parser - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE

parserModelUri - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE

POS_TAGGER_PATH - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors

prepend(DependencyRegex) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex

prepend(DEPNode[]) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex

prepend(ConllDependencyNode[]) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex

prependOptional(DependencyRegex) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex

prependOptional(DEPNode[]) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex

prependOptional(ConllDependencyNode[]) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex

process(JCas) - Method in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE

process(JCas) - Method in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

processCas(CAS) - Method in class org.apache.ctakes.dependency.parser.DependencyNodeWriter

Create an xml file from the data in the cas.

R

R_POS_DELIM - Static variable in class org.apache.ctakes.dependency.parser.util.Delim

R_REL_DELIM - Static variable in class org.apache.ctakes.dependency.parser.util.Delim

R_TOK_DELIM - Static variable in class org.apache.ctakes.dependency.parser.util.Delim

reverse() - Method in class org.apache.ctakes.dependency.parser.util.DependencyPath

S

SENTENCE_DETECTOR_PATH - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors

setCommonNode(ConllDependencyNode) - Method in class org.apache.ctakes.dependency.parser.util.DependencyPath

SIMPLE_SEGMENTER_PATH - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors

split(CharSequence) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex

SRL_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors

srlabeler - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

srlModelUri - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

srlPredUri - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

srlRoleUri - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE

SRLUtility - Class in org.apache.ctakes.dependency.parser.util

SRLUtility() - Constructor for class org.apache.ctakes.dependency.parser.util.SRLUtility

T

TOKENIZER_PATH - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors

toString() - Method in class org.apache.ctakes.dependency.parser.util.DependencyPath

toString() - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex

toSyntaxString() - Method in class org.apache.ctakes.dependency.parser.util.DependencyPath

toTripleString() - Method in class org.apache.ctakes.dependency.parser.util.DependencyPath

TRAINING_MODE_PARAM - Static variable in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader

TRIPLE_DELIM - Static variable in class org.apache.ctakes.dependency.parser.util.Delim

U

UP_ARC_A - Static variable in class org.apache.ctakes.dependency.parser.util.Delim

UP_ARC_B - Static variable in class org.apache.ctakes.dependency.parser.util.Delim

useLemmatizer - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE

W

WriteClearNLPDescriptors - Class in org.apache.ctakes.dependency.parser.ae.util

Use this to generate UIMA xml description files for the ClearNLP analysis engines.

WriteClearNLPDescriptors() - Constructor for class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors

WriteClearNLPDescriptors.Options - Class in org.apache.ctakes.dependency.parser.ae.util

WriteClearNLPDescriptors.Options() - Constructor for class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors.Options

X

XMIReader - Class in org.apache.ctakes.dependency.parser.ae.util

UIMA CollectionReader that reads in CASes from XMI files.

XMIReader() - Constructor for class org.apache.ctakes.dependency.parser.ae.util.XMIReader

A C D E F G H I L M O P R S T U W X