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B

BagOfAnnotationsGenerator<T extends org.apache.uima.jcas.tcas.Annotation,K> - Class in org.apache.ctakes.clinicalpipeline.runtime

BagOfAnnotationsGenerator(String, String) - Constructor for class org.apache.ctakes.clinicalpipeline.runtime.BagOfAnnotationsGenerator

BagOfAnnotationsGenerator(String, String, String) - Constructor for class org.apache.ctakes.clinicalpipeline.runtime.BagOfAnnotationsGenerator

BagOfCUIsGenerator - Class in org.apache.ctakes.clinicalpipeline.runtime

BagOfCUIsGenerator(String, String) - Constructor for class org.apache.ctakes.clinicalpipeline.runtime.BagOfCUIsGenerator

C

ClinicalPipelineWithUmls - Class in org.apache.ctakes.clinicalpipeline

Run the plaintext clinical pipeline, using the dictionary of terms from UMLS.

ClinicalPipelineWithUmls() - Constructor for class org.apache.ctakes.clinicalpipeline.ClinicalPipelineWithUmls

E

extractInformation(T) - Method in class org.apache.ctakes.clinicalpipeline.runtime.BagOfAnnotationsGenerator

extractInformation(IdentifiedAnnotation) - Method in class org.apache.ctakes.clinicalpipeline.runtime.BagOfCUIsGenerator

ExtractionPrepAnnotator - Class in org.apache.ctakes.clinicalpipeline.ae

UIMA annotator that prepares the CAS for output - performs some (final) updates to the CAS

ExtractionPrepAnnotator() - Constructor for class org.apache.ctakes.clinicalpipeline.ae.ExtractionPrepAnnotator

I

initialize(UimaContext) - Method in class org.apache.ctakes.clinicalpipeline.ae.ExtractionPrepAnnotator

Method invoked by UIMA framework to initialize this annotator

inputDirectory - Variable in class org.apache.ctakes.clinicalpipeline.ClinicalPipelineWithUmls

M

main(String[]) - Static method in class org.apache.ctakes.clinicalpipeline.ClinicalPipelineWithUmls

main(String[]) - Static method in class org.apache.ctakes.clinicalpipeline.runtime.BagOfCUIsGenerator

O

org.apache.ctakes.clinicalpipeline - package org.apache.ctakes.clinicalpipeline

org.apache.ctakes.clinicalpipeline.ae - package org.apache.ctakes.clinicalpipeline.ae

org.apache.ctakes.clinicalpipeline.runtime - package org.apache.ctakes.clinicalpipeline.runtime

P

process(JCas) - Method in class org.apache.ctakes.clinicalpipeline.ae.ExtractionPrepAnnotator

Method invoked by UIMA framework to process a document

process() - Method in class org.apache.ctakes.clinicalpipeline.runtime.BagOfAnnotationsGenerator

B C E I M O P