Hierarchy For All Packages

Package Hierarchies:

org.apache.ctakes.assertion.attributes, org.apache.ctakes.assertion.attributes.features, org.apache.ctakes.assertion.attributes.features.selection, org.apache.ctakes.assertion.attributes.generic, org.apache.ctakes.assertion.attributes.history, org.apache.ctakes.assertion.attributes.subject, org.apache.ctakes.assertion.cc, org.apache.ctakes.assertion.cr, org.apache.ctakes.assertion.eval, org.apache.ctakes.assertion.medfacts, org.apache.ctakes.assertion.medfacts.cleartk, org.apache.ctakes.assertion.medfacts.cleartk.extractors, org.apache.ctakes.assertion.medfacts.i2b2.api, org.apache.ctakes.assertion.medfacts.types, org.apache.ctakes.assertion.pipelines, org.apache.ctakes.assertion.train, org.apache.ctakes.assertion.util

Class Hierarchy

• java.lang.Object
  • java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
    • java.util.HashMap<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
      • org.apache.ctakes.assertion.util.SemanticClasses
  • org.apache.uima.analysis_component.AnalysisComponent_ImplBase (implements org.apache.uima.analysis_component.AnalysisComponent)
    • org.apache.uima.analysis_component.Annotator_ImplBase
      • org.apache.uima.analysis_component.JCasAnnotator_ImplBase
        • org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine
        • org.apache.ctakes.assertion.medfacts.ConceptConverterAnalysisEngine
        • org.uimafit.component.JCasAnnotator_ImplBase
          • org.apache.ctakes.assertion.medfacts.cleartk.AlternateCuePhraseAnnotator
          • org.apache.ctakes.assertion.eval.AssertionEvaluation.OnlyGoldAssertions
          • org.apache.ctakes.assertion.eval.AssertionEvaluation.ReferenceAnnotationsSystemAssertionClearer
          • org.apache.ctakes.assertion.eval.AssertionEvaluation.ReferenceIdentifiedAnnotationsSystemToGoldCopier
          • org.apache.ctakes.assertion.eval.AssertionEvaluation.ReferenceSupportingAnnotationsSystemToGoldCopier
          • org.apache.ctakes.assertion.eval.AssertionEvaluation.ReplaceCTakesEntityMentionsAndModifiersWithGold
          • org.cleartk.classifier.CleartkAnnotator<OUTCOME_TYPE> (implements org.uimafit.factory.initializable.Initializable)
            • org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
              • org.apache.ctakes.assertion.medfacts.cleartk.ConditionalCleartkAnalysisEngine
              • org.apache.ctakes.assertion.medfacts.cleartk.GenericCleartkAnalysisEngine
              • org.apache.ctakes.assertion.medfacts.cleartk.HistoryCleartkAnalysisEngine
              • org.apache.ctakes.assertion.medfacts.cleartk.PolarityCleartkAnalysisEngine
              • org.apache.ctakes.assertion.medfacts.cleartk.SubjectCleartkAnalysisEngine
              • org.apache.ctakes.assertion.medfacts.cleartk.UncertaintyCleartkAnalysisEngine
          • org.apache.ctakes.assertion.attributes.GenericAttributeAnalysisEngine
          • org.apache.ctakes.assertion.cr.GoldEntityAndAttributeReader
          • org.apache.ctakes.assertion.eval.MergeGoldViewFromOneCasIntoInitialViewOfAnotherCas
          • org.apache.ctakes.assertion.cr.MiPACQKnowtatorXMLReader
          • org.apache.ctakes.assertion.attributes.SubjectAttributeAnalysisEngine
        • org.uimafit.component.JCasConsumer_ImplBase
          • org.apache.ctakes.assertion.cc.JudgeAttributeInstances
  • org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact<OUTCOME_TYPE> (implements java.io.Serializable)
  • org.apache.ctakes.assertion.cr.ArgumentInfo
  • org.apache.ctakes.assertion.medfacts.cleartk.AssertionComponents
  • org.apache.ctakes.assertion.util.AssertionConst
  • org.apache.ctakes.assertion.eval.AssertionEvaluation.HashableAnnotation (implements java.lang.Comparable<T>)
  • org.apache.ctakes.assertion.medfacts.cleartk.AssertionSampleFeatureGenerator
  • org.apache.ctakes.assertion.util.AssertionTreeUtils
  • org.apache.ctakes.assertion.medfacts.CasIndexer<T>
  • org.apache.ctakes.assertion.medfacts.i2b2.api.CharacterOffsetToLineTokenConverterCtakesImpl (implements org.mitre.medfacts.zoner.CharacterOffsetToLineTokenConverter)
  • org.apache.ctakes.assertion.medfacts.ConceptLookup
  • org.apache.ctakes.assertion.medfacts.i2b2.api.ConstraintConstructor
    • org.apache.ctakes.assertion.medfacts.i2b2.api.ConstraintConstructorFindContainedBy
    • org.apache.ctakes.assertion.medfacts.i2b2.api.ConstraintConstructorFindContainedWithin
  • org.apache.ctakes.assertion.medfacts.cleartk.extractors.ContextWordWindowExtractor (implements org.cleartk.classifier.feature.extractor.simple.SimpleFeatureExtractor)
  • org.apache.ctakes.assertion.medfacts.Converti2b2AnnotationsToCTAKES
  • org.apache.ctakes.assertion.medfacts.ConvertXMIAssertionsToi2b2Format
  • org.apache.ctakes.assertion.medfacts.cleartk.CreateAssertionDescriptor
  • org.apache.ctakes.assertion.train.CrossValidateAttributeModels
  • org.apache.ctakes.assertion.train.CrossValidateChi2GridSearch
  • org.apache.ctakes.assertion.pipelines.CtakesFileNamer (implements org.uimafit.factory.initializable.Initializable, org.uimafit.component.xwriter.XWriterFileNamer)
  • org.apache.ctakes.assertion.medfacts.cleartk.extractors.CueWordTest
  • org.apache.ctakes.assertion.medfacts.cleartk.extractors.CueWordTest2
  • org.cleartk.eval.Evaluation_ImplBase<ITEM_TYPE,STATS_TYPE>
    • org.apache.ctakes.assertion.eval.AssertionEvaluation
  • org.apache.uima.cas.impl.FeatureStructureImpl (implements java.lang.Cloneable, org.apache.uima.cas.FeatureStructure)
    • org.apache.uima.jcas.cas.TOP
      • org.apache.uima.jcas.cas.AnnotationBase (implements org.apache.uima.cas.AnnotationBaseFS)
        • org.apache.uima.jcas.tcas.Annotation (implements org.apache.uima.cas.text.AnnotationFS)
          • org.apache.ctakes.assertion.medfacts.types.Assertion
          • org.apache.ctakes.assertion.medfacts.types.Concept
  • org.apache.ctakes.assertion.pipelines.GenerateTreeRepresentation
  • org.apache.ctakes.assertion.attributes.generic.GenericAttributeClassifier
  • org.apache.ctakes.assertion.attributes.features.GenericFeaturesExtractor (implements org.cleartk.classifier.feature.extractor.simple.SimpleFeatureExtractor)
  • org.apache.ctakes.assertion.pipelines.GoldEntityAndAttributeReaderPipeline
  • org.apache.ctakes.assertion.pipelines.GoldEntityAndAttributeReaderPipelineForSeedCorpus
  • org.apache.ctakes.assertion.attributes.history.HistoryAttributeClassifier
  • org.apache.ctakes.assertion.attributes.history.HistoryAttributeClassifier.SentComparator (implements java.util.Comparator<T>)
  • org.apache.ctakes.assertion.attributes.features.HistoryFeaturesExtractor (implements org.cleartk.classifier.feature.extractor.simple.SimpleFeatureExtractor)
  • org.apache.ctakes.assertion.train.JustJudgeStep
  • org.apache.ctakes.assertion.attributes.features.selection.MutualInformationFeatureSelection.MutualInformationStats<OUTCOME_T>
  • org.apache.ctakes.assertion.medfacts.cleartk.extractors.NegationDependencyFeatureExtractor (implements org.cleartk.classifier.feature.extractor.simple.SimpleFeatureExtractor)
  • org.apache.ctakes.assertion.util.NegationDepRegex
  • org.apache.ctakes.assertion.util.NegationManualDepContextAnalyzer
  • org.apache.ctakes.assertion.cr.NegExAnnotation
  • org.cleartk.util.Options_ImplBase
    • org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
    • org.apache.ctakes.assertion.pipelines.GenerateTreeRepresentation.Options
    • org.apache.ctakes.assertion.pipelines.RunJudgeAttributeInstances.Options
  • org.apache.ctakes.assertion.train.PolarityCotrainingTests
  • org.apache.ctakes.assertion.train.PolarityCotrainingTrain
  • org.apache.ctakes.assertion.train.ReadAndPreprocessForAttributeModels
  • org.apache.ctakes.assertion.train.ReadPreprocessTrainTestJudge
  • org.apache.ctakes.assertion.cr.RelationInfo
  • org.apache.uima.resource.Resource_ImplBase (implements org.apache.uima.resource.Resource)
    • org.apache.uima.resource.ConfigurableResource_ImplBase (implements org.apache.uima.resource.ConfigurableResource)
      • org.apache.uima.collection.CollectionReader_ImplBase (implements org.apache.uima.collection.CollectionReader)
        • org.apache.ctakes.assertion.cr.I2B2Challenge2010CollectionReader
        • org.uimafit.component.JCasCollectionReader_ImplBase
          • org.apache.ctakes.assertion.eval.XMIReader
        • org.apache.ctakes.assertion.cr.NegExCorpusReader
        • org.apache.ctakes.assertion.cr.XmiCollectionReaderCtakes
  • org.apache.ctakes.assertion.pipelines.RunJudgeAttributeInstances
  • org.apache.ctakes.assertion.pipelines.SharpCorpusSplit
  • org.mitre.medfacts.i2b2.api.SingleDocumentProcessor
    • org.apache.ctakes.assertion.medfacts.i2b2.api.SingleDocumentProcessorCtakes
  • org.apache.ctakes.assertion.cr.Span
  • org.apache.ctakes.assertion.medfacts.cleartk.extractors.SRLFeatureExtractor (implements org.cleartk.classifier.feature.extractor.simple.SimpleFeatureExtractor)
  • org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier
  • org.apache.ctakes.assertion.attributes.features.SubjectFeaturesExtractor (implements org.cleartk.classifier.feature.extractor.simple.SimpleFeatureExtractor)
  • org.apache.ctakes.assertion.medfacts.cleartk.extractors.SurroundingExtractor (implements org.cleartk.classifier.feature.extractor.simple.SimpleFeatureExtractor)
  • org.apache.ctakes.assertion.train.TestAttributeModels
  • org.apache.ctakes.assertion.eval.TestFeatureSelection
  • org.apache.uima.jcas.cas.TOP_Type
    • org.apache.uima.jcas.cas.AnnotationBase_Type
      • org.apache.uima.jcas.tcas.Annotation_Type
        • org.apache.ctakes.assertion.medfacts.types.Assertion_Type
        • org.apache.ctakes.assertion.medfacts.types.Concept_Type
  • org.cleartk.classifier.feature.transform.TrainableExtractor_ImplBase<OUTCOME_T> (implements org.cleartk.classifier.feature.transform.TrainableExtractor<OUTCOME_T>)
    • org.apache.ctakes.assertion.attributes.features.selection.FeatureSelection<OUTCOME_T> (implements com.google.common.base.Predicate<T>)
      • org.apache.ctakes.assertion.attributes.features.selection.Chi2FeatureSelection<OUTCOME_T>
      • org.apache.ctakes.assertion.attributes.features.selection.MutualInformationFeatureSelection<OUTCOME_T>
  • org.apache.ctakes.assertion.medfacts.cleartk.TrainAssertionModel
  • org.apache.ctakes.assertion.train.TrainAttributeModels
  • org.apache.ctakes.assertion.medfacts.cleartk.extractors.TreeFragmentFeatureExtractor (implements org.cleartk.classifier.feature.extractor.simple.SimpleFeatureExtractor)
    • org.apache.ctakes.assertion.medfacts.cleartk.extractors.AboveLeftFragmentExtractor
    • org.apache.ctakes.assertion.medfacts.cleartk.extractors.AboveRightFragmentExtractor
  • org.apache.ctakes.assertion.medfacts.cleartk.extractors.UncertaintyFeatureExtractor (implements org.cleartk.classifier.feature.extractor.simple.SimpleFeatureExtractor)
  • org.apache.ctakes.assertion.cr.XMLReader

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.apache.ctakes.assertion.attributes.features.selection.MutualInformationFeatureSelection.CombineScoreMethod (implements com.google.common.base.Function<F,T>)
    • org.apache.ctakes.assertion.cc.JudgeAttributeInstances.Selector
    • org.apache.ctakes.assertion.pipelines.SharpCorpusSplit.Subcorpus