org.apache.ctakes.typesystem.type.refsem
Class OntologyConcept

java.lang.Object
  org.apache.uima.cas.impl.FeatureStructureImpl
      org.apache.uima.jcas.cas.TOP
          org.apache.ctakes.typesystem.type.refsem.OntologyConcept

All Implemented Interfaces:

Cloneable, org.apache.uima.cas.FeatureStructure

Direct Known Subclasses:

UmlsConcept

public class OntologyConcept
extends org.apache.uima.jcas.cas.TOP

Ontologies (e.g., SNOMED-CT) provide an expert semantic representation for concepts. They typically assign a code to a concept and normalize across various textual representations of that concept. IdentifiedAnnotation and Elements may point to these normalized concept representations to indicate clinical concepts. Equivalent to cTAKES: edu.mayo.bmi.uima.core.type.OntologyConcept Updated by JCasGen Thu Nov 28 10:33:42 CST 2013 XML source: C:/build-Apache-cTAKES/ctakes-3.1.1/rc2/checkout/ctakes/target/checkout/ctakes-side-effect/src/main/resources/org/apache/ctakes/sideeffect/types/TypeSystem.xml

Field Summary

static int	type
static int	typeIndexID

Fields inherited from class org.apache.uima.jcas.cas.TOP

addr, jcasType

Constructor Summary

protected	OntologyConcept() Never called.
	OntologyConcept(int addr, org.apache.uima.jcas.cas.TOP_Type type) Internal - constructor used by generator
	OntologyConcept(org.apache.uima.jcas.JCas jcas)

Method Summary

String	getCode() getter for code - gets
String	getCodingScheme() getter for codingScheme - gets
String	getOid() getter for oid - gets
String	getOui() getter for oui - gets holds the rxnorm unique identifier for a given drug mention.
int	getTypeIndexID()
void	setCode(String v) setter for code - sets
void	setCodingScheme(String v) setter for codingScheme - sets
void	setOid(String v) setter for oid - sets
void	setOui(String v) setter for oui - sets holds the rxnorm unique identifier for a given drug mention.

Methods inherited from class org.apache.uima.jcas.cas.TOP

addToIndexes, addToIndexes, equals, getAddress, getCAS, getCASImpl, getLowLevelCas, hashCode, removeFromIndexes, removeFromIndexes

Methods inherited from class org.apache.uima.cas.impl.FeatureStructureImpl

clone, getBooleanValue, getByteValue, getDoubleValue, getFeatureValue, getFeatureValueAsString, getFloatValue, getIntValue, getLongValue, getShortValue, getStringValue, getType, prettyPrint, prettyPrint, prettyPrint, setBooleanValue, setByteValue, setDoubleValue, setFeatureValue, setFeatureValueFromString, setFloatValue, setIntValue, setLongValue, setShortValue, setStringValue, toString, toString

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

typeIndexID

public static final int typeIndexID

type

public static final int type

Constructor Detail

OntologyConcept

protected OntologyConcept()

Never called. Disable default constructor

OntologyConcept

public OntologyConcept(int addr,
                       org.apache.uima.jcas.cas.TOP_Type type)

Internal - constructor used by generator

OntologyConcept

public OntologyConcept(org.apache.uima.jcas.JCas jcas)

Method Detail

getTypeIndexID

public int getTypeIndexID()

Overrides:

getTypeIndexID in class org.apache.uima.jcas.cas.TOP

getCodingScheme

public String getCodingScheme()

getter for codingScheme - gets

setCodingScheme

public void setCodingScheme(String v)

setter for codingScheme - sets

getCode

public String getCode()

getter for code - gets

setCode

public void setCode(String v)

setter for code - sets

getOid

public String getOid()

getter for oid - gets

setOid

public void setOid(String v)

setter for oid - sets

getOui

public String getOui()

getter for oui - gets holds the rxnorm unique identifier for a given drug mention. TODO: change this attribute because of name clash (UMLS/SNOMED)

setOui

public void setOui(String v)

setter for oui - sets holds the rxnorm unique identifier for a given drug mention. TODO: change this attribute because of name clash (UMLS/SNOMED)