A B C D E F G H I J K L M N O P R S T U V W X

A

annotateRange(JCas, String, Segment, int) - Method in class org.apache.ctakes.core.ae.SentenceDetector

Detect sentences within a section of the text and add annotations to the CAS.

annotateRange(JCas, int, int) - Method in class org.apache.ctakes.core.ae.TokenizerAnnotator

A utility method that tokenizes a range of text.

annotateRange(JCas, int, int) - Method in class org.apache.ctakes.core.ae.TokenizerAnnotatorPTB

Tokenizes a range of text, adding the tokens to the CAS Tokenizes one sentence at a time.

annotationSlots - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation

The annotation-valued annotation attributes (i.e.

B

BaseToken - Interface in org.apache.ctakes.core.fsm.token

BaseTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters

Adapts JCas token annotation to interface expected by the Context Dependent Tokenizer.

BaseTokenAdapter(Annotation) - Constructor for class org.apache.ctakes.core.fsm.adapters.BaseTokenAdapter

BaseTokenAdapter - Class in org.apache.ctakes.core.fsm.token.adapter

BaseTokenAdapter(Token) - Constructor for class org.apache.ctakes.core.fsm.token.adapter.BaseTokenAdapter

BaseTokenImpl - Class in org.apache.ctakes.core.fsm.output

BaseTokenImpl(int, int) - Constructor for class org.apache.ctakes.core.fsm.output.BaseTokenImpl

begin - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation.Span

The offset of the first character in the text span.

booleanSlots - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation

The boolean-valued annotation attributes

buildList(JCas, TOP[]) - Static method in class org.apache.ctakes.core.util.ListFactory

Builds a FSList from an array of JCas objects.

C

CAPS_ALL - Static variable in interface org.apache.ctakes.core.fsm.token.WordToken

CAPS_ALL - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token

CAPS_FIRST_ONLY - Static variable in interface org.apache.ctakes.core.fsm.token.WordToken

CAPS_FIRST_ONLY - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token

CAPS_MIXED - Static variable in interface org.apache.ctakes.core.fsm.token.WordToken

CAPS_MIXED - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token

CAPS_NONE - Static variable in interface org.apache.ctakes.core.fsm.token.WordToken

CAPS_NONE - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token

CAPS_UNKNOWN - Static variable in interface org.apache.ctakes.core.fsm.token.WordToken

CAPS_UNKNOWN - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token

CasConsumer - Class in org.apache.ctakes.core.cc

CasConsumer that writes a JCas (the current view) to an xml file

CasConsumer() - Constructor for class org.apache.ctakes.core.cc.CasConsumer

CASConsumerTestDriver - Class in org.apache.ctakes.core.cc

CASConsumerTestDriver() - Constructor for class org.apache.ctakes.core.cc.CASConsumerTestDriver

CharacterToken - Interface in org.apache.ctakes.core.fsm.token

CharacterTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters

Adapts JCas token annotation to interface expected by the Context Dependent Tokenizer.

CharacterTokenAdapter(BaseToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.CharacterTokenAdapter

CharacterTokenAdapter - Class in org.apache.ctakes.core.fsm.token.adapter

CharacterTokenAdapter(Token) - Constructor for class org.apache.ctakes.core.fsm.token.adapter.CharacterTokenAdapter

close() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads

close() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader

close() - Method in class org.apache.ctakes.core.cr.JdbcCollectionReader

close() - Method in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader

close() - Method in class org.apache.ctakes.core.cr.XmiCollectionReaderCtakes

CmdLineCpeRunner - Class in org.apache.ctakes.core.cpe

Author: SPF Affiliation: CHIP-NLP Date: 1/17/13

CmdLineCpeRunner() - Constructor for class org.apache.ctakes.core.cpe.CmdLineCpeRunner

collectionProcessComplete(ProcessTrace) - Method in class org.apache.ctakes.core.cc.TokenFreqCasConsumer

This method sorts the frequency counts and prints out the resulting frequencies in descending order to the frequency file in 'word|count' format.

CombineCondition - Class in org.apache.ctakes.core.fsm.condition

CombineCondition(Condition, Condition) - Constructor for class org.apache.ctakes.core.fsm.condition.CombineCondition

COMMENT_STRING - Static variable in class org.apache.ctakes.core.resource.LinesFromFileStringsResourceImpl

compare(Token, Token) - Method in class org.apache.ctakes.core.nlp.tokenizer.OffsetComparator

ContractionResult - Class in org.apache.ctakes.core.nlp.tokenizer

ContractionResult() - Constructor for class org.apache.ctakes.core.nlp.tokenizer.ContractionResult

ContractionsPTB - Class in org.apache.ctakes.core.nlp.tokenizer

ContractionsPTB() - Constructor for class org.apache.ctakes.core.nlp.tokenizer.ContractionsPTB

ContractionToken - Interface in org.apache.ctakes.core.fsm.token

ContractionTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters

Adapts JCas token annotation to interface expected by the Context Dependent Tokenizer.

ContractionTokenAdapter(ContractionToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.ContractionTokenAdapter

convert(Token, JCas, int) - Static method in class org.apache.ctakes.core.ae.TokenConverter

Converts from Java Tokenizer object into a JCas object.

convert(BaseToken) - Static method in class org.apache.ctakes.core.ae.TokenConverter

Convert from a JCas object into Java Tokenizer object.

convertTokens(List<Token>) - Static method in class org.apache.ctakes.core.fsm.token.adapter.TokenConverter

CopyAnnotator - Class in org.apache.ctakes.core.ae

Utility annotator that copy's data from an existing JCas object into a new JCas object.

CopyAnnotator() - Constructor for class org.apache.ctakes.core.ae.CopyAnnotator

countAnnotationsInSpan(JCas, int, int, int, int[]) - Static method in class org.apache.ctakes.core.util.FSUtil

Does not use FSUtil.getAnnotationsInSpan(JCas, int, int, int, int[]) so we don't create a collection unnecessarily.

countAnnotationsInSpan(JCas, int, int, int) - Static method in class org.apache.ctakes.core.util.FSUtil

returns the number of annotations of specified type in the

CR - Static variable in class org.apache.ctakes.core.sentence.SentenceSpan

CRLF - Static variable in class org.apache.ctakes.core.sentence.SentenceSpan

CtakesFileNamer - Class in org.apache.ctakes.core.util

This is a very simple implementation of XWriterFileNamer that generates file names based on a prefix string and a incrementing counter.

CtakesFileNamer() - Constructor for class org.apache.ctakes.core.util.CtakesFileNamer

D

DateFSM - Class in org.apache.ctakes.core.fsm.machine

Uses one or more finite state machines to detect dates in the given input of tokens.

DateFSM() - Constructor for class org.apache.ctakes.core.fsm.machine.DateFSM

Constructor

DateParser - Class in org.apache.ctakes.core.util

DateParser() - Constructor for class org.apache.ctakes.core.util.DateParser

DateToken - Class in org.apache.ctakes.core.fsm.output

DateToken(int, int) - Constructor for class org.apache.ctakes.core.fsm.output.DateToken

DayNightWordCondition - Class in org.apache.ctakes.core.fsm.condition

Handles case of A.M.

DayNightWordCondition() - Constructor for class org.apache.ctakes.core.fsm.condition.DayNightWordCondition

DecimalCondition - Class in org.apache.ctakes.core.fsm.condition

DecimalCondition() - Constructor for class org.apache.ctakes.core.fsm.condition.DecimalCondition

DecimalRangeCondition - Class in org.apache.ctakes.core.fsm.condition

DecimalRangeCondition(double, double) - Constructor for class org.apache.ctakes.core.fsm.condition.DecimalRangeCondition

DecimalToken - Interface in org.apache.ctakes.core.fsm.token

DecimalTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters

Adapts JCas token annotation to interface expected by the Context Dependent Tokenizer.

DecimalTokenAdapter(NumToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.DecimalTokenAdapter

DecimalTokenAdapter - Class in org.apache.ctakes.core.fsm.token.adapter

DecimalTokenAdapter(Token) - Constructor for class org.apache.ctakes.core.fsm.token.adapter.DecimalTokenAdapter

DecimalValueCondition - Class in org.apache.ctakes.core.fsm.condition

DecimalValueCondition(double) - Constructor for class org.apache.ctakes.core.fsm.condition.DecimalValueCondition

DisjoinCondition - Class in org.apache.ctakes.core.fsm.condition

DisjoinCondition(Condition, Condition) - Constructor for class org.apache.ctakes.core.fsm.condition.DisjoinCondition

DocumentIDAnnotationUtil - Class in org.apache.ctakes.core.util

DocumentIDAnnotationUtil() - Constructor for class org.apache.ctakes.core.util.DocumentIDAnnotationUtil

DocumentIdPrinterAnalysisEngine - Class in org.apache.ctakes.core.ae

DocumentIdPrinterAnalysisEngine() - Constructor for class org.apache.ctakes.core.ae.DocumentIdPrinterAnalysisEngine

DocumentSection - Class in org.apache.ctakes.core.util

Class containing relevant information for a given document section

DocumentSection(int, int, String) - Constructor for class org.apache.ctakes.core.util.DocumentSection

E

end - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation.Span

The offset immediately after the last character in the text span.

EndOfSentenceScannerImpl - Class in org.apache.ctakes.core.sentence

End of Sentence scanner with more candidate end-of-sentence characters than the default.

EndOfSentenceScannerImpl() - Constructor for class org.apache.ctakes.core.sentence.EndOfSentenceScannerImpl

enter(Object) - Method in class org.apache.ctakes.core.fsm.state.NamedState

enter(Object) - Method in class org.apache.ctakes.core.fsm.state.NonTerminalEndState

EolToken - Interface in org.apache.ctakes.core.fsm.token

equals(Object) - Method in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation

equals(Object) - Method in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation.Span

execute(List<? extends BaseToken>) - Method in class org.apache.ctakes.core.fsm.machine.DateFSM

Executes the finite state machines.

execute(List<? extends BaseToken>) - Method in class org.apache.ctakes.core.fsm.machine.FractionFSM

Executes the finite state machines.

execute(List) - Method in interface org.apache.ctakes.core.fsm.machine.FSM

execute(List<? extends BaseToken>, Set<? extends BaseToken>) - Method in class org.apache.ctakes.core.fsm.machine.MeasurementFSM

Executes the finite state machines.

execute(List<?>) - Method in class org.apache.ctakes.core.fsm.machine.NegationFSM

Executes the finite state machines.

execute(List<? extends BaseToken>) - Method in class org.apache.ctakes.core.fsm.machine.PersonTitleFSM

Executes the finite state machines.

execute(List<? extends BaseToken>, Set<? extends BaseToken>) - Method in class org.apache.ctakes.core.fsm.machine.RangeFSM

Executes the finite state machines.

execute(List<? extends BaseToken>) - Method in class org.apache.ctakes.core.fsm.machine.RomanNumeralFSM

Executes the finite state machines.

execute(List<TextToken>) - Method in class org.apache.ctakes.core.fsm.machine.StatusIndicatorFSM

Executes the finite state machines.

execute(List<? extends BaseToken>) - Method in class org.apache.ctakes.core.fsm.machine.TimeFSM

Executes the finite state machines.

exit() - Method in class org.apache.ctakes.core.fsm.state.NamedState

exit() - Method in class org.apache.ctakes.core.fsm.state.NonTerminalEndState

F

FAMILY_HISTORY_STATUS - Static variable in class org.apache.ctakes.core.fsm.output.StatusIndicator

FileLocator - Class in org.apache.ctakes.core.resource

Utility class that attempts to locate files.

FileLocator() - Constructor for class org.apache.ctakes.core.resource.FileLocator

FileResource - Interface in org.apache.ctakes.core.resource

FileResourceImpl - Class in org.apache.ctakes.core.resource

FileResourceImpl() - Constructor for class org.apache.ctakes.core.resource.FileResourceImpl

FilesInDirectoryCasConsumer - Class in org.apache.ctakes.core.cc

For each CAS a local file with the document text is written to a directory specifed by a parameter.

FilesInDirectoryCasConsumer() - Constructor for class org.apache.ctakes.core.cc.FilesInDirectoryCasConsumer

FilesInDirectoryCollectionCyclicalReads - Class in org.apache.ctakes.core.cr

FilesInDirectoryCollectionCyclicalReads() - Constructor for class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads

FilesInDirectoryCollectionReader - Class in org.apache.ctakes.core.cr

FilesInDirectoryCollectionReader() - Constructor for class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader

FilterAnnotator - Class in org.apache.ctakes.core.ae

FilterAnnotator() - Constructor for class org.apache.ctakes.core.ae.FilterAnnotator

findFirstCharOfNextToken(String, int) - Method in class org.apache.ctakes.core.nlp.tokenizer.TokenizerPTB

findNextNonAlphaNum(String, int) - Static method in class org.apache.ctakes.core.nlp.tokenizer.TokenizerHelper

FractionFSM - Class in org.apache.ctakes.core.fsm.machine

Uses one or more finite state machines to detect fractions in the given input of tokens.

FractionFSM() - Constructor for class org.apache.ctakes.core.fsm.machine.FractionFSM

Constructor

FractionToken - Class in org.apache.ctakes.core.fsm.output

FractionToken(int, int) - Constructor for class org.apache.ctakes.core.fsm.output.FractionToken

FSM - Interface in org.apache.ctakes.core.fsm.machine

Any finate state machine defined must implement this interface

FSUtil - Class in org.apache.ctakes.core.util

FSUtil() - Constructor for class org.apache.ctakes.core.util.FSUtil

G

getAnnotationsInSpan(JCas, int, int, int, int[]) - Static method in class org.apache.ctakes.core.util.FSUtil

getAnnotationsInSpanIterator(JCas, int, int, int) - Static method in class org.apache.ctakes.core.util.FSUtil

Deprecated.

getAnnotationsIteratorInSpan(JCas, int, int, int) - Static method in class org.apache.ctakes.core.util.FSUtil

For correct behavior, requires types to be listed in TypePriorities so that the subiterator works as expected

getAnnotatorNames() - Method in class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader

Returns the names of the annotators in the Knowtator files that represent the gold standard

getAsStream(String) - Static method in class org.apache.ctakes.core.resource.FileLocator

getCaps() - Method in class org.apache.ctakes.core.fsm.adapters.WordTokenAdapter

getCaps() - Method in class org.apache.ctakes.core.fsm.token.adapter.WordTokenAdapter

getCaps() - Method in interface org.apache.ctakes.core.fsm.token.WordToken

getCaps() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token

Gets the caps state of the token.

getChar() - Method in class org.apache.ctakes.core.fsm.adapters.CharacterTokenAdapter

getChar() - Method in class org.apache.ctakes.core.fsm.token.adapter.CharacterTokenAdapter

getChar() - Method in interface org.apache.ctakes.core.fsm.token.CharacterToken

getConnection() - Method in interface org.apache.ctakes.core.resource.JdbcConnectionResource

Gets the JDBC connection.

getConnection() - Method in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl

getContent() - Method in class org.apache.ctakes.core.util.DocumentSection

getContractionTokenLen() - Method in class org.apache.ctakes.core.nlp.tokenizer.ContractionResult

getCoveringSpan() - Method in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation

Get a span that approximates KnowtatorAnnotation.spans, giving the earliest begin offset and the latest end offset.

getDescription() - Static method in class org.apache.ctakes.core.cc.XmiWriterCasConsumerCtakes

Parses and returns the descriptor for this collection reader.

getDescriptorURL() - Static method in class org.apache.ctakes.core.cc.XmiWriterCasConsumerCtakes

getDocumentID(JCas) - Static method in class org.apache.ctakes.core.util.DocumentIDAnnotationUtil

getEnd() - Method in class org.apache.ctakes.core.sentence.SentenceSpan

getEndLine() - Method in class org.apache.ctakes.core.util.DocumentSection

getEndOffset() - Method in class org.apache.ctakes.core.fsm.adapters.BaseTokenAdapter

getEndOffset() - Method in class org.apache.ctakes.core.fsm.output.BaseTokenImpl

getEndOffset() - Method in class org.apache.ctakes.core.fsm.token.adapter.BaseTokenAdapter

getEndOffset() - Method in interface org.apache.ctakes.core.fsm.token.BaseToken

getEndOffset() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token

Gets the end offset.

getEndOfSentenceCharacters() - Method in class org.apache.ctakes.core.sentence.EndOfSentenceScannerImpl

getEntityTypeId(String) - Static method in class org.apache.ctakes.core.util.Mapper

Map entity type to its integer id.

getFile() - Method in interface org.apache.ctakes.core.resource.FileResource

getFile() - Method in class org.apache.ctakes.core.resource.FileResourceImpl

getFileInExistingDir(String) - Static method in class org.apache.ctakes.core.ae.SentenceDetector

getHistoryOf() - Static method in class org.apache.ctakes.core.util.SHARPKnowtatorXMLDefaults

getIndexAfterLastNonDigit(String) - Static method in class org.apache.ctakes.core.util.DateParser

getIndexFirstNonLetter(String) - Static method in class org.apache.ctakes.core.util.DateParser

getIndexReader() - Method in interface org.apache.ctakes.core.resource.LuceneIndexReaderResource

getIndexReader() - Method in class org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl

getKnowtatorURI(JCas) - Method in class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader

Get the URI for the Knowtator XML file that should be loaded

getLengthIfNextApostIsMiddleOfContraction(int, int, String) - Static method in class org.apache.ctakes.core.nlp.tokenizer.ContractionsPTB

Determine if the text starting at 'position' within 'text' is the start of a contraction such as "should've" or "hasn't" or "it's" by looking at whether there is a letter before the apostrophe, and the appropriate letters after the apostrophe (or in the case of "n't", verify the letter before is an 'n' Note that if the text starting at 'position' is something like "n't" which isn't a complete word, returns null.

getMap() - Method in interface org.apache.ctakes.core.resource.StringIntegerMapResource

Gets a map of the String/Integer values.

getMap() - Method in class org.apache.ctakes.core.resource.StringIntegerMapResourceImpl

Gets a map of the String/Integer values.

getMap() - Method in interface org.apache.ctakes.core.resource.StringMapResource

Gets a map of String/String values.

getMap() - Method in class org.apache.ctakes.core.resource.StringMapResourceImpl

Gets a map of the String/Integer values.

getModifierTypeId(String) - Static method in class org.apache.ctakes.core.util.Mapper

Map modifier type to its integer id.

getNewEndOffset() - Method in class org.apache.ctakes.core.ci.TextModification

getNewStartOffset() - Method in class org.apache.ctakes.core.ci.TextModification

getNewText() - Method in class org.apache.ctakes.core.ci.TextModification

getNext(CAS) - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads

getNext(CAS) - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader

getNext(CAS) - Method in class org.apache.ctakes.core.cr.JdbcCollectionReader

getNext(CAS) - Method in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader

getNext(JCas) - Method in class org.apache.ctakes.core.cr.TextReader

getNext(CAS) - Method in class org.apache.ctakes.core.cr.XmiCollectionReaderCtakes

getNext(JCas) - Method in class org.apache.ctakes.core.cr.XMIReader

getNumberOfDocuments() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads

Gets the total number of documents that will be returned by this collection reader.

getNumberOfDocuments() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader

Gets the total number of documents that will be returned by this collection reader.

getNumberOfDocuments() - Method in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader

Gets the total number of documents that will be returned by this collection reader.

getNumPosition() - Method in class org.apache.ctakes.core.fsm.adapters.WordTokenAdapter

getNumPosition() - Method in class org.apache.ctakes.core.fsm.token.adapter.WordTokenAdapter

getNumPosition() - Method in interface org.apache.ctakes.core.fsm.token.WordToken

getNumPosition() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token

Gets the position of a number inside a Token.

getOrigEndOffset() - Method in class org.apache.ctakes.core.ci.TextModification

getOrigStartOffset() - Method in class org.apache.ctakes.core.ci.TextModification

getOutputXml() - Method in interface org.apache.ctakes.core.cc.NonTerminalConsumer

Gets the generated output from a CasConsumer in XML form.

getPositions(String) - Method in class org.apache.ctakes.core.sentence.EndOfSentenceScannerImpl

getPositions(StringBuffer) - Method in class org.apache.ctakes.core.sentence.EndOfSentenceScannerImpl

getPositions(char[]) - Method in class org.apache.ctakes.core.sentence.EndOfSentenceScannerImpl

getPositive() - Method in class org.apache.ctakes.core.fsm.adapters.NumberTokenAdapter

getPositive() - Method in class org.apache.ctakes.core.fsm.token.adapter.NumberTokenAdapter

getPositive() - Method in interface org.apache.ctakes.core.fsm.token.NumberToken

getProgress() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads

getProgress() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader

getProgress() - Method in class org.apache.ctakes.core.cr.JdbcCollectionReader

getProgress() - Method in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader

getProgress() - Method in class org.apache.ctakes.core.cr.TextReader

getProgress() - Method in class org.apache.ctakes.core.cr.XmiCollectionReaderCtakes

getProgress() - Method in class org.apache.ctakes.core.cr.XMIReader

getReadableFile(String) - Static method in class org.apache.ctakes.core.ae.SentenceDetector

getSectionName() - Method in class org.apache.ctakes.core.util.DocumentSection

getSentenceProbabilities() - Method in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes

Returns the probabilities associated with the most recent calls to sentDetect().

getStart() - Method in class org.apache.ctakes.core.sentence.SentenceSpan

getStartLine() - Method in class org.apache.ctakes.core.util.DocumentSection

getStartOffset() - Method in class org.apache.ctakes.core.fsm.adapters.BaseTokenAdapter

getStartOffset() - Method in class org.apache.ctakes.core.fsm.output.BaseTokenImpl

getStartOffset() - Method in class org.apache.ctakes.core.fsm.token.adapter.BaseTokenAdapter

getStartOffset() - Method in interface org.apache.ctakes.core.fsm.token.BaseToken

getStartOffset() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token

Gets the start offset.

getStatus() - Method in class org.apache.ctakes.core.fsm.output.StatusIndicator

getStringParameterValuesMap(String, UimaContext, String) - Static method in class org.apache.ctakes.core.util.ParamUtil

getStringParameterValuesSet(String, UimaContext) - Static method in class org.apache.ctakes.core.util.ParamUtil

getStrings() - Method in class org.apache.ctakes.core.resource.LinesFromFileStringsResourceImpl

getStrings() - Method in interface org.apache.ctakes.core.resource.StringsResource

getSubject() - Static method in class org.apache.ctakes.core.util.SHARPKnowtatorXMLDefaults

getText() - Method in class org.apache.ctakes.core.fsm.adapters.TextTokenAdapter

getText() - Method in class org.apache.ctakes.core.fsm.token.adapter.WordTokenAdapter

getText() - Method in interface org.apache.ctakes.core.fsm.token.TextToken

getText() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token

getText() - Method in class org.apache.ctakes.core.sentence.SentenceSpan

getTextURI(JCas) - Method in class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader

Get the URI that the text in this class was loaded from

getType() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token

Gets the type of the token.

getType(String) - Static method in class org.apache.ctakes.core.util.JCasUtil

getType(Class<? extends TOP>) - Static method in class org.apache.ctakes.core.util.JCasUtil

getValue() - Method in class org.apache.ctakes.core.fsm.adapters.DecimalTokenAdapter

getValue() - Method in class org.apache.ctakes.core.fsm.adapters.IntegerTokenAdapter

getValue() - Method in class org.apache.ctakes.core.fsm.token.adapter.DecimalTokenAdapter

getValue() - Method in class org.apache.ctakes.core.fsm.token.adapter.IntegerTokenAdapter

getValue() - Method in interface org.apache.ctakes.core.fsm.token.DecimalToken

getValue() - Method in interface org.apache.ctakes.core.fsm.token.IntegerToken

getValueAsDouble() - Method in class org.apache.ctakes.core.fsm.adapters.IntegerTokenAdapter

getValueAsDouble() - Method in class org.apache.ctakes.core.fsm.token.adapter.IntegerTokenAdapter

getWordTokenLen() - Method in class org.apache.ctakes.core.nlp.tokenizer.ContractionResult

H

hashCode() - Method in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation

hashCode() - Method in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation.Span

hasNext() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads

Similar to 'org.apache.uima.collection.CollectionReader' method hasNext() except interations represents the actual number of documents to be processed, so if the total number of documents in a queue is more than the 'Iterations' value then only the iteration amount will be processed.

hasNext() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader

hasNext() - Method in class org.apache.ctakes.core.cr.JdbcCollectionReader

hasNext() - Method in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader

hasNext() - Method in class org.apache.ctakes.core.cr.TextReader

hasNext() - Method in class org.apache.ctakes.core.cr.XmiCollectionReaderCtakes

hasNext() - Method in class org.apache.ctakes.core.cr.XMIReader

HISTORY_STATUS - Static variable in class org.apache.ctakes.core.fsm.output.StatusIndicator

HourMinuteCondition - Class in org.apache.ctakes.core.fsm.condition

Handles case where 2:00 is a single WordToken.

HourMinuteCondition(int, int, int, int) - Constructor for class org.apache.ctakes.core.fsm.condition.HourMinuteCondition

HtmlTableCasConsumer - Class in org.apache.ctakes.core.cc

Outputs an HTML table that visualizes the specified Annotation objects over the document text.

HtmlTableCasConsumer() - Constructor for class org.apache.ctakes.core.cc.HtmlTableCasConsumer

HyphenatedPTB - Class in org.apache.ctakes.core.nlp.tokenizer

HyphenatedPTB() - Constructor for class org.apache.ctakes.core.nlp.tokenizer.HyphenatedPTB

HyphenTextModifierImpl - Class in org.apache.ctakes.core.ci

HyphenTextModifierImpl(String, int) - Constructor for class org.apache.ctakes.core.ci.HyphenTextModifierImpl

HyphenTextModifierImpl(InputStream, int) - Constructor for class org.apache.ctakes.core.ci.HyphenTextModifierImpl

Default constructor takes a name of the file containing hyphenated phrases, with their frequency.

I

id - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation

The unique identifier assigned to this annotation by Knowtator

initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.CopyAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.FilterAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.OverlapAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.SectionSegmentAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.SentenceDetector

initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.SimpleSegmentAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.SimpleSegmentWithTagsAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.TokenizerAnnotator

initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.TokenizerAnnotatorPTB

initialize() - Method in class org.apache.ctakes.core.cc.CasConsumer

Read in configuration parameters

initialize() - Method in class org.apache.ctakes.core.cc.FilesInDirectoryCasConsumer

initialize() - Method in class org.apache.ctakes.core.cc.HtmlTableCasConsumer

initialize() - Method in class org.apache.ctakes.core.cc.NormalizedFilesInDirectoryCasConsumer

initialize() - Method in class org.apache.ctakes.core.cc.TokenFreqCasConsumer

This method opens/creates the file specified by "TokenFreqFile" and initializes the data structure that will keep track of frequency counts.

initialize() - Method in class org.apache.ctakes.core.cc.TokenOffsetsCasConsumer

initialize() - Method in class org.apache.ctakes.core.cc.XmiWriterCasConsumerCtakes

initialize() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads

initialize() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader

initialize() - Method in class org.apache.ctakes.core.cr.JdbcCollectionReader

initialize() - Method in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader

initialize(UimaContext) - Method in class org.apache.ctakes.core.cr.TextReader

initialize() - Method in class org.apache.ctakes.core.cr.XmiCollectionReaderCtakes

initialize(UimaContext) - Method in class org.apache.ctakes.core.cr.XMIReader

initialize(UimaContext) - Method in class org.apache.ctakes.core.util.CtakesFileNamer

IntegerCondition - Class in org.apache.ctakes.core.fsm.condition

IntegerCondition() - Constructor for class org.apache.ctakes.core.fsm.condition.IntegerCondition

IntegerRangeCondition - Class in org.apache.ctakes.core.fsm.condition

IntegerRangeCondition(int, int) - Constructor for class org.apache.ctakes.core.fsm.condition.IntegerRangeCondition

IntegerToken - Interface in org.apache.ctakes.core.fsm.token

IntegerTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters

Adapts JCas token annotation to interface expected by the Context Dependent Tokenizer.

IntegerTokenAdapter(NumToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.IntegerTokenAdapter

IntegerTokenAdapter - Class in org.apache.ctakes.core.fsm.token.adapter

IntegerTokenAdapter(Token) - Constructor for class org.apache.ctakes.core.fsm.token.adapter.IntegerTokenAdapter

IntegerValueCondition - Class in org.apache.ctakes.core.fsm.condition

IntegerValueCondition(int) - Constructor for class org.apache.ctakes.core.fsm.condition.IntegerValueCondition

isAcceptableBreak(String, int, int) - Method in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes

Allows subclasses to check an overzealous (read: poorly trained) model from flagging obvious non-breaks as breaks based on some boolean determination of a break's acceptability.

isAlphabetLetter(char) - Method in class org.apache.ctakes.core.nlp.tokenizer.Tokenizer

isAnnotationPresentInSpan(JCas, int, int, int) - Static method in class org.apache.ctakes.core.util.FSUtil

returns a true if the annotation type is present in the span

isInteger() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token

isNumber(String) - Static method in class org.apache.ctakes.core.nlp.tokenizer.Tokenizer

Applies number rules to the given token.

iv_currentIndex - Variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader

iv_files - Variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader

J

JCasUtil - Class in org.apache.ctakes.core.util

JCasUtil() - Constructor for class org.apache.ctakes.core.util.JCasUtil

JdbcCollectionReader - Class in org.apache.ctakes.core.cr

Collection Reader that pulls documents to be processed from a database.

JdbcCollectionReader() - Constructor for class org.apache.ctakes.core.cr.JdbcCollectionReader

JdbcConnectionResource - Interface in org.apache.ctakes.core.resource

Resource for obtaining a JDBC database connection.

JdbcConnectionResourceImpl - Class in org.apache.ctakes.core.resource

Implementation of JdbcConnectionResource.

JdbcConnectionResourceImpl() - Constructor for class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl

K

KnowtatorAnnotation - Class in org.apache.ctakes.core.knowtator

Represents a Knowtator annotation.

KnowtatorAnnotation.Span - Class in org.apache.ctakes.core.knowtator

Represents the character offsets of a Knowtator annotation.

KnowtatorXMLParser - Class in org.apache.ctakes.core.knowtator

KnowtatorXMLParser(String...) - Constructor for class org.apache.ctakes.core.knowtator.KnowtatorXMLParser

KnowtatorXMLParser(Set<String>) - Constructor for class org.apache.ctakes.core.knowtator.KnowtatorXMLParser

L

LF - Static variable in class org.apache.ctakes.core.sentence.SentenceSpan

LinesFromFileCollectionReader - Class in org.apache.ctakes.core.cr

The original code was copied from org.apache.uima.examples.cpe.FileSystemCollectionReader and modified for Mayo use.

LinesFromFileCollectionReader() - Constructor for class org.apache.ctakes.core.cr.LinesFromFileCollectionReader

LinesFromFileStringsResourceImpl - Class in org.apache.ctakes.core.resource

Reads in an array of Strings from a file - each line in the file is a string.

LinesFromFileStringsResourceImpl() - Constructor for class org.apache.ctakes.core.resource.LinesFromFileStringsResourceImpl

ListFactory - Class in org.apache.ctakes.core.util

Factory to build List of built-in CAS types such as FloatList, IntegerList, StringList, and FSList.

ListFactory() - Constructor for class org.apache.ctakes.core.util.ListFactory

load(DataResource) - Method in class org.apache.ctakes.core.resource.FileResourceImpl

load(DataResource) - Method in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl

load(DataResource) - Method in class org.apache.ctakes.core.resource.LinesFromFileStringsResourceImpl

load(DataResource) - Method in class org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl

Loads a Lucene index for reading.

load(DataResource) - Method in class org.apache.ctakes.core.resource.StringIntegerMapResourceImpl

Loads data from a file.

load(DataResource) - Method in class org.apache.ctakes.core.resource.StringMapResourceImpl

Loads data from a file.

locateFile(String) - Static method in class org.apache.ctakes.core.resource.FileLocator

Deprecated. As of release 3.1, replaced by #getAsStream()

logger - Variable in class org.apache.ctakes.core.ae.DocumentIdPrinterAnalysisEngine

LuceneIndexReaderResource - Interface in org.apache.ctakes.core.resource

LuceneIndexReaderResourceImpl - Class in org.apache.ctakes.core.resource

Oct 2010 - convert to lucene 3.0.2

LuceneIndexReaderResourceImpl() - Constructor for class org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl

M

main(String[]) - Static method in class org.apache.ctakes.core.ae.SentenceDetector

Train a new sentence detector from the training data in the first file and write the model to the second file.
The training data file is expected to have one sentence per line.

main(String[]) - Static method in class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader

This main method is only for testing purposes.

main(String[]) - Static method in class org.apache.ctakes.core.cc.CASConsumerTestDriver

main(String[]) - Static method in class org.apache.ctakes.core.ci.HyphenTextModifierImpl

Simple tests of TextModification
Output expected:
UNSUPPORTED: TextModification with offset changes.
UNSUPPORTED: TextModification with offset changes.
UNSUPPORTED: TextModification with offset changes.
Orig: Non Hodgkin's the x ray without any non small cell complications.
New: (new text not generated, see previous messages) Non-Hodgkin Orig: 0-12 New: 0-11
x-ray Orig: 19-25 New: 18-23
non-small-cell Orig: 38-53 New: 36-50
Orig: Non Hodgkin's the x ray without any non small cell complications.
New: Non-Hodgkin's the x-ray without any non-small-cell complications.
Non-Hodgkin Orig: 0-11 New: 0-11
x-ray Orig: 18-23 New: 18-23
non-small-cell Orig: 36-50 New: 36-50
Note the case of the words doesn't matter.

main(String[]) - Static method in class org.apache.ctakes.core.cpe.CmdLineCpeRunner

main(String[]) - Static method in class org.apache.ctakes.core.nlp.tokenizer.ContractionsPTB

main(String[]) - Static method in class org.apache.ctakes.core.nlp.tokenizer.HyphenatedPTB

main(String[]) - Static method in class org.apache.ctakes.core.nlp.tokenizer.TokenizerHelper

main(String[]) - Static method in class org.apache.ctakes.core.nlp.tokenizer.TokenizerPTB

main(String[]) - Static method in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes

Trains a new sentence detection model.

Mapper - Class in org.apache.ctakes.core.util

Map various category names to their ctakes integer id.

Mapper() - Constructor for class org.apache.ctakes.core.util.Mapper

MeasurementFSM - Class in org.apache.ctakes.core.fsm.machine

Uses one or more finite state machines to detect measurements in the given input of tokens.

MeasurementFSM() - Constructor for class org.apache.ctakes.core.fsm.machine.MeasurementFSM

Constructor

MeasurementToken - Class in org.apache.ctakes.core.fsm.output

MeasurementToken(int, int) - Constructor for class org.apache.ctakes.core.fsm.output.MeasurementToken

modify(String) - Method in class org.apache.ctakes.core.ci.HyphenTextModifierImpl

modify(String) - Method in interface org.apache.ctakes.core.ci.TextModifier

Generates modifications for the specified text.

N

NamedState - Class in org.apache.ctakes.core.fsm.state

Used mainly for aiding the debugging process.

NamedState(String) - Constructor for class org.apache.ctakes.core.fsm.state.NamedState

nameFile(JCas) - Method in class org.apache.ctakes.core.util.CtakesFileNamer

NegateCondition - Class in org.apache.ctakes.core.fsm.condition

NegateCondition(Condition) - Constructor for class org.apache.ctakes.core.fsm.condition.NegateCondition

NegationFSM - Class in org.apache.ctakes.core.fsm.machine

Uses one or more finite state machines to detect dates in the given input of tokens.

NegationFSM() - Constructor for class org.apache.ctakes.core.fsm.machine.NegationFSM

Constructor

NegationIndicator - Class in org.apache.ctakes.core.fsm.output

NegationIndicator(int, int) - Constructor for class org.apache.ctakes.core.fsm.output.NegationIndicator

NewlineTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters

Adapts JCas token annotation to interface expected by the Context Dependent Tokenizer.

NewlineTokenAdapter(NewlineToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.NewlineTokenAdapter

NO_SPLIT - Static variable in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes

Constant indicates no sentence split.

NonTerminalConsumer - Interface in org.apache.ctakes.core.cc

Extends the CasConsumer interface to provide a method for getting output in XML form.

NonTerminalEndState - Class in org.apache.ctakes.core.fsm.state

NonTerminalEndState(String) - Constructor for class org.apache.ctakes.core.fsm.state.NonTerminalEndState

NormalizedFilesInDirectoryCasConsumer - Class in org.apache.ctakes.core.cc

For each CAS a local file with the document text is written to a directory specifed by a parameter.

NormalizedFilesInDirectoryCasConsumer() - Constructor for class org.apache.ctakes.core.cc.NormalizedFilesInDirectoryCasConsumer

NullAnnotator - Class in org.apache.ctakes.core.ae

This annotator does nothing.

NullAnnotator() - Constructor for class org.apache.ctakes.core.ae.NullAnnotator

NUM_FIRST - Static variable in interface org.apache.ctakes.core.fsm.token.WordToken

NUM_FIRST - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token

NUM_LAST - Static variable in interface org.apache.ctakes.core.fsm.token.WordToken

NUM_LAST - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token

NUM_MIDDLE - Static variable in interface org.apache.ctakes.core.fsm.token.WordToken

NUM_MIDDLE - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token

NUM_NONE - Static variable in interface org.apache.ctakes.core.fsm.token.WordToken

NUM_NONE - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token

NumberCondition - Class in org.apache.ctakes.core.fsm.condition

NumberCondition() - Constructor for class org.apache.ctakes.core.fsm.condition.NumberCondition

NumberToken - Interface in org.apache.ctakes.core.fsm.token

NumberTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters

Adapts JCas token annotation to interface expected by the Context Dependent Tokenizer.

NumberTokenAdapter(NumToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.NumberTokenAdapter

NumberTokenAdapter - Class in org.apache.ctakes.core.fsm.token.adapter

NumberTokenAdapter(Token) - Constructor for class org.apache.ctakes.core.fsm.token.adapter.NumberTokenAdapter

O

OffsetComparator - Class in org.apache.ctakes.core.nlp.tokenizer

Sorts Token objects by their offset.

OffsetComparator() - Constructor for class org.apache.ctakes.core.nlp.tokenizer.OffsetComparator

org.apache.ctakes.core.ae - package org.apache.ctakes.core.ae

org.apache.ctakes.core.cc - package org.apache.ctakes.core.cc

org.apache.ctakes.core.ci - package org.apache.ctakes.core.ci

org.apache.ctakes.core.cpe - package org.apache.ctakes.core.cpe

org.apache.ctakes.core.cr - package org.apache.ctakes.core.cr

org.apache.ctakes.core.fsm.adapters - package org.apache.ctakes.core.fsm.adapters

This package contains adapters for JCas token objects comforming to the input interfaces used by the FSM project.

org.apache.ctakes.core.fsm.condition - package org.apache.ctakes.core.fsm.condition

org.apache.ctakes.core.fsm.machine - package org.apache.ctakes.core.fsm.machine

org.apache.ctakes.core.fsm.output - package org.apache.ctakes.core.fsm.output

org.apache.ctakes.core.fsm.state - package org.apache.ctakes.core.fsm.state

org.apache.ctakes.core.fsm.token - package org.apache.ctakes.core.fsm.token

org.apache.ctakes.core.fsm.token.adapter - package org.apache.ctakes.core.fsm.token.adapter

org.apache.ctakes.core.knowtator - package org.apache.ctakes.core.knowtator

org.apache.ctakes.core.nlp.tokenizer - package org.apache.ctakes.core.nlp.tokenizer

org.apache.ctakes.core.resource - package org.apache.ctakes.core.resource

org.apache.ctakes.core.sentence - package org.apache.ctakes.core.sentence

org.apache.ctakes.core.util - package org.apache.ctakes.core.util

OVERLAP_A_ENV_B - Static variable in class org.apache.ctakes.core.ae.OverlapAnnotator

A completely envelopes B

OVERLAP_B_ENV_A - Static variable in class org.apache.ctakes.core.ae.OverlapAnnotator

B completely envelopes A

OVERLAP_EXACT - Static variable in class org.apache.ctakes.core.ae.OverlapAnnotator

A and B have identical offsets

OVERLAP_NONE - Static variable in class org.apache.ctakes.core.ae.OverlapAnnotator

No overlap at all between A and B

OVERLAP_PARTIAL - Static variable in class org.apache.ctakes.core.ae.OverlapAnnotator

A and B only partially overlap

OverlapAnnotator - Class in org.apache.ctakes.core.ae

OverlapAnnotator() - Constructor for class org.apache.ctakes.core.ae.OverlapAnnotator

P

PARAM_COMMENT_STRING - Static variable in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader

Optional parameter specifies a comment string.

PARAM_DB_CONN_RESRC - Static variable in class org.apache.ctakes.core.cr.JdbcCollectionReader

Name of external resource for database connection.

PARAM_DOCID_COLS - Static variable in class org.apache.ctakes.core.cr.JdbcCollectionReader

Optional parameter.

PARAM_DOCID_DELIMITER - Static variable in class org.apache.ctakes.core.cr.JdbcCollectionReader

Optional parameter.

PARAM_DOCTEXT_COL - Static variable in class org.apache.ctakes.core.cr.JdbcCollectionReader

Name of column from resultset that contains the document text.

PARAM_DRIVER_CLASS - Static variable in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl

JDBC driver ClassName.

PARAM_ENCODING - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads

Name of configuration parameter that contains the character encoding used by the input files.

PARAM_ENCODING - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader

Name of configuration parameter that contains the character encoding used by the input files.

PARAM_EXTENSIONS - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads

Name of optional configuration parameter that specifies the extensions of the files that the collection reader will read.

PARAM_EXTENSIONS - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader

Name of optional configuration parameter that specifies the extensions of the files that the collection reader will read.

PARAM_FAILUNKNOWN - Static variable in class org.apache.ctakes.core.cr.XmiCollectionReaderCtakes

Name of the configuration parameter that must be set to indicate if the execution fails if an encountered type is unknown

PARAM_FILES - Static variable in class org.apache.ctakes.core.cr.TextReader

PARAM_FILES - Static variable in class org.apache.ctakes.core.cr.XMIReader

PARAM_ID_DELIMETER - Static variable in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader

Name of optional configuration parameter that specifies a character (or string) that delimits the id of the document from the text of the document.

PARAM_IGNORE_BLANK_LINES - Static variable in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader

Optional parameter determines whether a blank line will be processed as a document or will be ignored.

PARAM_INPUT_FILE_NAME - Static variable in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader

This parameter will be used the descriptor file to specify the location of the file that will be run through this collection reader.

PARAM_INPUTDIR - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads

Name of configuration parameter that must be set to the path of a directory containing input files.

PARAM_INPUTDIR - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader

Name of configuration parameter that must be set to the path of a directory containing input files.

PARAM_INPUTDIR - Static variable in class org.apache.ctakes.core.cr.XmiCollectionReaderCtakes

Name of configuration parameter that must be set to the path of a directory containing the XMI files.

PARAM_ISOLATION - Static variable in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl

Transaction isolation level.

PARAM_KEEP_ALIVE - Static variable in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl

Flag that determines whether to keep JDBC connection open no matter what.

PARAM_LANGUAGE - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads

Name of optional configuration parameter that contains the language of the documents in the input directory.

PARAM_LANGUAGE - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader

Name of optional configuration parameter that contains the language of the documents in the input directory.

PARAM_LANGUAGE - Static variable in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader

Name of optional configuration parameter that contains the language of the documents in the input directory.

PARAM_NUMREADS - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads

Arguement to equate to # of times it should read the files.

PARAM_OUTPUTDIR - Static variable in class org.apache.ctakes.core.cc.FilesInDirectoryCasConsumer

PARAM_OUTPUTDIR - Static variable in class org.apache.ctakes.core.cc.NormalizedFilesInDirectoryCasConsumer

PARAM_OUTPUTDIR - Static variable in class org.apache.ctakes.core.cc.TokenOffsetsCasConsumer

PARAM_OUTPUTDIR - Static variable in class org.apache.ctakes.core.cc.XmiWriterCasConsumerCtakes

Name of configuration parameter that must be set to the path of a directory into which the output files will be written.

PARAM_PASSWORD - Static variable in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl

Password for db authentication.

PARAM_PREFIX - Static variable in class org.apache.ctakes.core.util.CtakesFileNamer

The parameter name for the configuration parameter that specifies a fixed prefix for all returned file names.

PARAM_RECURSE - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads

PARAM_RECURSE - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader

PARAM_SEGMENTS_TO_SKIP - Static variable in class org.apache.ctakes.core.ae.SentenceDetector

Value is "SegmentsToSkip".

PARAM_SEGMENTS_TO_SKIP - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator

Value is "SegmentsToSkip".

PARAM_SEGMENTS_TO_SKIP - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotatorPTB

Value is "SegmentsToSkip".

PARAM_SET_DEFAULTS - Static variable in class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader

PARAM_SQL - Static variable in class org.apache.ctakes.core.cr.JdbcCollectionReader

SQL statement to retrieve the document.

PARAM_SUFFIX - Static variable in class org.apache.ctakes.core.util.CtakesFileNamer

The parameter name for the configuration parameter that specifies a fixed suffix for all returned file names.

PARAM_TEXT_DIRECTORY - Static variable in class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader

PARAM_URL - Static variable in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl

JDBC URL that specifies db network location and db name.

PARAM_USERNAME - Static variable in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl

Username for db authentication.

PARAM_VALUE_FILE_RESRC - Static variable in class org.apache.ctakes.core.cr.JdbcCollectionReader

Optional parameter.

PARAM_WORD_FREQ_FILE - Static variable in class org.apache.ctakes.core.cc.TokenFreqCasConsumer

The name of the parameter that is specifies the path of the output file in the descriptor file.

ParamUtil - Class in org.apache.ctakes.core.util

ParamUtil() - Constructor for class org.apache.ctakes.core.util.ParamUtil

parse(URI) - Method in class org.apache.ctakes.core.knowtator.KnowtatorXMLParser

parse(JCas, String) - Static method in class org.apache.ctakes.core.util.DateParser

First try parsing full date (month, day and year) using java.util.Date If that fails, try extracting at least part of the date

parseInt(String, Logger) - Static method in class org.apache.ctakes.core.ae.SentenceDetector

PersonTitleFSM - Class in org.apache.ctakes.core.fsm.machine

Uses one or more finite state machines to detect measurements in the given input of tokens.

PersonTitleFSM() - Constructor for class org.apache.ctakes.core.fsm.machine.PersonTitleFSM

Constructor

PersonTitleToken - Class in org.apache.ctakes.core.fsm.output

PersonTitleToken(int, int) - Constructor for class org.apache.ctakes.core.fsm.output.PersonTitleToken

PROBABLE_STATUS - Static variable in class org.apache.ctakes.core.fsm.output.StatusIndicator

process(JCas) - Method in class org.apache.ctakes.core.ae.CopyAnnotator

process(JCas) - Method in class org.apache.ctakes.core.ae.DocumentIdPrinterAnalysisEngine

process(JCas) - Method in class org.apache.ctakes.core.ae.FilterAnnotator

Checks if the annotation is of the type to be retained.

process(JCas) - Method in class org.apache.ctakes.core.ae.NullAnnotator

process(JCas) - Method in class org.apache.ctakes.core.ae.OverlapAnnotator

process(JCas) - Method in class org.apache.ctakes.core.ae.SectionSegmentAnnotator

Entry point for processing.

process(JCas) - Method in class org.apache.ctakes.core.ae.SentenceDetector

Entry point for processing.

process(JCas) - Method in class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader

process(JCas) - Method in class org.apache.ctakes.core.ae.SimpleSegmentAnnotator

Entry point for processing.

process(JCas) - Method in class org.apache.ctakes.core.ae.SimpleSegmentWithTagsAnnotator

Entry point for processing.

process(JCas) - Method in class org.apache.ctakes.core.ae.TokenizerAnnotator

Entry point for processing.

process(JCas) - Method in class org.apache.ctakes.core.ae.TokenizerAnnotatorPTB

Entry point for processing.

processCas(CAS) - Method in class org.apache.ctakes.core.cc.CasConsumer

Create an xml file from the data in the cas.

processCas(CAS) - Method in class org.apache.ctakes.core.cc.FilesInDirectoryCasConsumer

processCas(CAS) - Method in class org.apache.ctakes.core.cc.HtmlTableCasConsumer

processCas(CAS) - Method in class org.apache.ctakes.core.cc.NormalizedFilesInDirectoryCasConsumer

processCas(CAS) - Method in class org.apache.ctakes.core.cc.TokenFreqCasConsumer

Iterates through all of the WordTokenAnnotation's, gets the covered text for each annotation and increments the frequency count for that text.

processCas(CAS) - Method in class org.apache.ctakes.core.cc.TokenOffsetsCasConsumer

processCas(CAS) - Method in class org.apache.ctakes.core.cc.XmiWriterCasConsumerCtakes

Processes the CAS which was populated by the TextAnalysisEngines.

PunctuationToken - Interface in org.apache.ctakes.core.fsm.token

PunctuationTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters

Adapts JCas token annotation to interface expected by the Context Dependent Tokenizer.

PunctuationTokenAdapter(PunctuationToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.PunctuationTokenAdapter

PunctuationTokenAdapter - Class in org.apache.ctakes.core.fsm.token.adapter

Adapts a Context Free Tokenizer token into a Context Dependent Tokenizer PunctuationToken.

PunctuationTokenAdapter(Token) - Constructor for class org.apache.ctakes.core.fsm.token.adapter.PunctuationTokenAdapter

PunctuationValueCondition - Class in org.apache.ctakes.core.fsm.condition

PunctuationValueCondition(char) - Constructor for class org.apache.ctakes.core.fsm.condition.PunctuationValueCondition

R

RangeCondition - Class in org.apache.ctakes.core.fsm.condition

Checks whether a token is a RangeToken.

RangeCondition() - Constructor for class org.apache.ctakes.core.fsm.condition.RangeCondition

RangeFSM - Class in org.apache.ctakes.core.fsm.machine

Uses one or more finite state machines to detect ranges in the given input of tokens.

RangeFSM() - Constructor for class org.apache.ctakes.core.fsm.machine.RangeFSM

Constructor

RangeToken - Class in org.apache.ctakes.core.fsm.output

RangeToken(int, int) - Constructor for class org.apache.ctakes.core.fsm.output.RangeToken

removeCommas(String) - Method in class org.apache.ctakes.core.fsm.adapters.NumberTokenAdapter

removeCommas(String) - Method in class org.apache.ctakes.core.fsm.token.adapter.NumberTokenAdapter

RomanNumeralCondition - Class in org.apache.ctakes.core.fsm.condition

Checks whether a token is a RomanNumeralToken.

RomanNumeralCondition() - Constructor for class org.apache.ctakes.core.fsm.condition.RomanNumeralCondition

RomanNumeralFSM - Class in org.apache.ctakes.core.fsm.machine

Uses one or more finite state machines to detect roman numerals in the given input of tokens.

RomanNumeralFSM() - Constructor for class org.apache.ctakes.core.fsm.machine.RomanNumeralFSM

Constructor

RomanNumeralToken - Class in org.apache.ctakes.core.fsm.output

RomanNumeralToken(int, int) - Constructor for class org.apache.ctakes.core.fsm.output.RomanNumeralToken

S

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.CombineCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.DayNightWordCondition

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.DecimalCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.DecimalRangeCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.DecimalValueCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.DisjoinCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.HourMinuteCondition

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.IntegerCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.IntegerRangeCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.IntegerValueCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.NegateCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.NumberCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.PunctuationValueCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.RangeCondition

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.RomanNumeralCondition

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.SymbolValueCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.TextSetCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.TextValueCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.WordSetCondition

Called to check if the conditional meets the criteria defined by this state.

satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.WordValueCondition

Called to check if the conditional meets the criteria defined by this state.

SD_MODEL_FILE_PARAM - Static variable in class org.apache.ctakes.core.ae.SentenceDetector

sections - Variable in class org.apache.ctakes.core.ae.SectionSegmentAnnotator

SectionSegmentAnnotator - Class in org.apache.ctakes.core.ae

Creates a single segment annotation that spans the entire document.

SectionSegmentAnnotator() - Constructor for class org.apache.ctakes.core.ae.SectionSegmentAnnotator

sentDetect(String) - Method in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes

Detect sentences in a String.

SentenceDetector - Class in org.apache.ctakes.core.ae

Wraps the OpenNLP sentence detector in a UIMA annotator

SentenceDetector() - Constructor for class org.apache.ctakes.core.ae.SentenceDetector

SentenceDetectorCtakes - Class in org.apache.ctakes.core.sentence

A sentence detector for splitting up raw text into sentences.

SentenceDetectorCtakes(MaxentModel, SDContextGenerator, EndOfSentenceScanner) - Constructor for class org.apache.ctakes.core.sentence.SentenceDetectorCtakes

Initializes the current instance.

SentenceSpan - Class in org.apache.ctakes.core.sentence

A span of text and its offsets within some larger text

SentenceSpan(int, int, String) - Constructor for class org.apache.ctakes.core.sentence.SentenceSpan

sentPosDetect(String) - Method in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes

Detect the position of the first words of sentences in a String.

setCaps(byte) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token

Sets the caps state of the token.

setContent(String) - Method in class org.apache.ctakes.core.util.DocumentSection

setContractionTokenLen(int) - Method in class org.apache.ctakes.core.nlp.tokenizer.ContractionResult

setEnd(int) - Method in class org.apache.ctakes.core.sentence.SentenceSpan

Set offset of end of this span within the larger text

setEndLine(int) - Method in class org.apache.ctakes.core.util.DocumentSection

setEndOffset(int) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token

Sets the end offset.

setIsInteger(boolean) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token

setNumPosition(byte) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token

Sets the position of a number inside a Token.

setSectionName(String) - Method in class org.apache.ctakes.core.util.DocumentSection

setStart(int) - Method in class org.apache.ctakes.core.sentence.SentenceSpan

Set offset of start of this span within the larger text

setStartLine(int) - Method in class org.apache.ctakes.core.util.DocumentSection

setStartOffset(int) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token

Sets the start offset.

setText(String) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token

setText(String) - Method in class org.apache.ctakes.core.sentence.SentenceSpan

setType(byte) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token

Sets the type of the token.

setWordTokenLen(int) - Method in class org.apache.ctakes.core.nlp.tokenizer.ContractionResult

SHARPKnowtatorXMLDefaults - Class in org.apache.ctakes.core.util

A helper class that centralizes methods to assign all the default values from the SHARP corpus annotation guidelines.

SHARPKnowtatorXMLDefaults() - Constructor for class org.apache.ctakes.core.util.SHARPKnowtatorXMLDefaults

SHARPKnowtatorXMLReader - Class in org.apache.ctakes.core.ae

SHARPKnowtatorXMLReader() - Constructor for class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader

SimpleSegmentAnnotator - Class in org.apache.ctakes.core.ae

Creates a single segment annotation that spans the entire document.

SimpleSegmentAnnotator() - Constructor for class org.apache.ctakes.core.ae.SimpleSegmentAnnotator

SimpleSegmentWithTagsAnnotator - Class in org.apache.ctakes.core.ae

Creates a single segment annotation that spans the entire document.

SimpleSegmentWithTagsAnnotator() - Constructor for class org.apache.ctakes.core.ae.SimpleSegmentWithTagsAnnotator

spannedText - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation

The text spanned by this annnotation (null if not associated with a span of text).

spans - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation

The character offsets of this annotation (empty if not associated with a span of text).

SPLIT - Static variable in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes

Constant indicates a sentence split.

splitAtLineBreaksAndTrim(String) - Method in class org.apache.ctakes.core.sentence.SentenceSpan

Trim any leading or trailing whitespace.

StatusIndicator - Class in org.apache.ctakes.core.fsm.output

StatusIndicator(int, int, int) - Constructor for class org.apache.ctakes.core.fsm.output.StatusIndicator

StatusIndicatorFSM - Class in org.apache.ctakes.core.fsm.machine

Uses one or more finite state machines to detect indications of
family history of
history of
possible/probable/likely

StatusIndicatorFSM() - Constructor for class org.apache.ctakes.core.fsm.machine.StatusIndicatorFSM

Constructor

StringIntegerMapResource - Interface in org.apache.ctakes.core.resource

Resource that defines a map between a String (KEY) and Integer.

StringIntegerMapResourceImpl - Class in org.apache.ctakes.core.resource

Implementation for StringIntegerMapResource interface.

StringIntegerMapResourceImpl() - Constructor for class org.apache.ctakes.core.resource.StringIntegerMapResourceImpl

StringMapResource - Interface in org.apache.ctakes.core.resource

Resource that defines a map between a String (KEY) and Integer.

StringMapResourceImpl - Class in org.apache.ctakes.core.resource

Implementation for StringIntegerMapResource interface.

StringMapResourceImpl() - Constructor for class org.apache.ctakes.core.resource.StringMapResourceImpl

stringSlots - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation

The string-valued annotation attributes

StringsResource - Interface in org.apache.ctakes.core.resource

A Resource interface for getting an array of strings.

SymbolToken - Interface in org.apache.ctakes.core.fsm.token

SymbolTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters

Adapts JCas token annotation to interface expected by the Context Dependent Tokenizer.

SymbolTokenAdapter(SymbolToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.SymbolTokenAdapter

SymbolValueCondition - Class in org.apache.ctakes.core.fsm.condition

SymbolValueCondition(char) - Constructor for class org.apache.ctakes.core.fsm.condition.SymbolValueCondition

T

test(HyphenTextModifierImpl, String) - Static method in class org.apache.ctakes.core.ci.HyphenTextModifierImpl

TextModification - Class in org.apache.ctakes.core.ci

Value object class that describes a modification of document text.

TextModification(int, int, int, int, String) - Constructor for class org.apache.ctakes.core.ci.TextModification

TextModifier - Interface in org.apache.ctakes.core.ci

Defines a generic interface for modifying text.

TextReader - Class in org.apache.ctakes.core.cr

UIMA CollectionReader that reads in CASes from XMI files.

TextReader() - Constructor for class org.apache.ctakes.core.cr.TextReader

TextSetCondition - Class in org.apache.ctakes.core.fsm.condition

TextSetCondition(Set<String>, boolean) - Constructor for class org.apache.ctakes.core.fsm.condition.TextSetCondition

TextToken - Interface in org.apache.ctakes.core.fsm.token

TextTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters

Adapts JCas token annotation to interface expected by the Context Dependent Tokenizer.

TextTokenAdapter(Annotation) - Constructor for class org.apache.ctakes.core.fsm.adapters.TextTokenAdapter

TextValueCondition - Class in org.apache.ctakes.core.fsm.condition

TextValueCondition(String, boolean) - Constructor for class org.apache.ctakes.core.fsm.condition.TextValueCondition

TimeFSM - Class in org.apache.ctakes.core.fsm.machine

Uses one or more finite state machines to detect times in the given input of tokens.

TimeFSM() - Constructor for class org.apache.ctakes.core.fsm.machine.TimeFSM

Constructor

TimeToken - Class in org.apache.ctakes.core.fsm.output

TimeToken(int, int) - Constructor for class org.apache.ctakes.core.fsm.output.TimeToken

Token - Class in org.apache.ctakes.core.nlp.tokenizer

Object that represents a generic token.

Token(int, int) - Constructor for class org.apache.ctakes.core.nlp.tokenizer.Token

Constructor

TOKEN_CAP_ALL - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator

TOKEN_CAP_FIRST_ONLY - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator

TOKEN_CAP_MIXED - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator

TOKEN_CAP_NONE - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator

TOKEN_NUM_POS_FIRST - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator

TOKEN_NUM_POS_LAST - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator

TOKEN_NUM_POS_MIDDLE - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator

TOKEN_NUM_POS_NONE - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator

TOKEN_NUM_TYPE_DECIMAL - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator

TOKEN_NUM_TYPE_INTEGER - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator

TOKEN_NUM_TYPE_UNKNOWN - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator

TokenConverter - Class in org.apache.ctakes.core.ae

Utilities methods for converting between Java Tokenizer objects and their equivalent JCas objects.

TokenConverter() - Constructor for class org.apache.ctakes.core.ae.TokenConverter

TokenConverter - Class in org.apache.ctakes.core.fsm.token.adapter

TokenConverter() - Constructor for class org.apache.ctakes.core.fsm.token.adapter.TokenConverter

TokenFreqCasConsumer - Class in org.apache.ctakes.core.cc

This class creates a file that contains the frequencies of the word tokens found in a set in a text collection.

TokenFreqCasConsumer() - Constructor for class org.apache.ctakes.core.cc.TokenFreqCasConsumer

tokenize(String) - Method in class org.apache.ctakes.core.nlp.tokenizer.Tokenizer

Tokenizes a string of text and outputs a list of Token objects.

tokenize(String) - Method in class org.apache.ctakes.core.nlp.tokenizer.TokenizerPTB

Tokenize a string that is assumed to be the entire document (or at least to start at 0)

tokenizeAndSort(String) - Method in class org.apache.ctakes.core.nlp.tokenizer.Tokenizer

Tokenizes a string of text and outputs a list of Token objects in sorted order.

Tokenizer - Class in org.apache.ctakes.core.nlp.tokenizer

A class used to break natural text into tokens.

Tokenizer() - Constructor for class org.apache.ctakes.core.nlp.tokenizer.Tokenizer

Constructor

Tokenizer(Map<String, Integer>, int) - Constructor for class org.apache.ctakes.core.nlp.tokenizer.Tokenizer

Constructor

TokenizerAnnotator - Class in org.apache.ctakes.core.ae

UIMA annotator that uses the Tokenizer module.

TokenizerAnnotator() - Constructor for class org.apache.ctakes.core.ae.TokenizerAnnotator

TokenizerAnnotatorPTB - Class in org.apache.ctakes.core.ae

UIMA annotator that tokenizes based on Penn Treebank rules.

TokenizerAnnotatorPTB() - Constructor for class org.apache.ctakes.core.ae.TokenizerAnnotatorPTB

TokenizerHelper - Class in org.apache.ctakes.core.nlp.tokenizer

TokenizerHelper() - Constructor for class org.apache.ctakes.core.nlp.tokenizer.TokenizerHelper

TokenizerPTB - Class in org.apache.ctakes.core.nlp.tokenizer

A class used to break natural text into tokens following PTB rules.

TokenizerPTB() - Constructor for class org.apache.ctakes.core.nlp.tokenizer.TokenizerPTB

Constructor

tokenizeTextSegment(JCas, String, int, boolean) - Method in class org.apache.ctakes.core.nlp.tokenizer.TokenizerPTB

Tokenize text that starts at offset offsetAdjustment within the complete text

tokenLengthCheckingForHyphenatedTerms(String) - Static method in class org.apache.ctakes.core.nlp.tokenizer.HyphenatedPTB

There is the fixed list of hyphenated words to not be split (hyphenatedWordsLookup) And here are some made-up examples of words using affixes to keep together chronic-itis 1 suffix mega-huge 1 prefix e-game-fest 1 prefix and 1 suffix salon-o-torium 1 suffix that contains 2 hyphens urban-esque-wise 2 suffixes

TokenOffsetsCasConsumer - Class in org.apache.ctakes.core.cc

For each CAS a local file with the offsets of the BaseToken annotations is written to a directory specifed by a parameter.

TokenOffsetsCasConsumer() - Constructor for class org.apache.ctakes.core.cc.TokenOffsetsCasConsumer

toString() - Method in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation.Span

toString() - Method in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation

toString() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token

toString() - Method in class org.apache.ctakes.core.sentence.SentenceSpan

train(String, ObjectStream<SentenceSample>, boolean, Dictionary) - Static method in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes

train(String, ObjectStream<SentenceSample>, boolean, Dictionary, int, int) - Static method in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes

type - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation

The type (or "class") of annotation

TYPE_CONTRACTION - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token

Contains contractions and possessives (since they cannot be differentiated without context).

TYPE_EOL - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token

A EOL token is defined as a line feed or carriage return character.

TYPE_NUMBER - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token

A number token is defined as a consecutive series of digits.

TYPE_PUNCT - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token

A punctuation token is defined as one character that can be either a period, double quote, single quote, question mark, exclamation point, hyphen (if not surrounded by word characters), etc...

TYPE_SYMBOL - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token

Characters @!#$%^&*?

TYPE_UNKNOWN - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token

The type is unknown.

TYPE_WORD - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token

A word token is defined as a consecutive series of word characters.

typeDescription(byte) - Static method in class org.apache.ctakes.core.nlp.tokenizer.Token

U

usage(Logger) - Static method in class org.apache.ctakes.core.ae.SentenceDetector

useTokenEnd - Variable in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes

V

validateHyphenMap(Map<String, Integer>) - Static method in class org.apache.ctakes.core.nlp.tokenizer.Tokenizer

Validate the structure of the hyphen map.

W

WordSetCondition - Class in org.apache.ctakes.core.fsm.condition

WordSetCondition(Set<String>, boolean) - Constructor for class org.apache.ctakes.core.fsm.condition.WordSetCondition

WordToken - Interface in org.apache.ctakes.core.fsm.token

WordTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters

Adapts JCas token annotation to interface expected by the Context Dependent Tokenizer.

WordTokenAdapter(WordToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.WordTokenAdapter

WordTokenAdapter - Class in org.apache.ctakes.core.fsm.token.adapter

Adapts a Context Free Tokenizer token into a Context Dependent Tokenizer WordToken.

WordTokenAdapter(Token) - Constructor for class org.apache.ctakes.core.fsm.token.adapter.WordTokenAdapter

WordValueCondition - Class in org.apache.ctakes.core.fsm.condition

WordValueCondition(String, boolean) - Constructor for class org.apache.ctakes.core.fsm.condition.WordValueCondition

X

XmiCollectionReaderCtakes - Class in org.apache.ctakes.core.cr

A simple collection reader that reads CASes in XMI format from a directory in the filesystem.

XmiCollectionReaderCtakes() - Constructor for class org.apache.ctakes.core.cr.XmiCollectionReaderCtakes

XMIReader - Class in org.apache.ctakes.core.cr

UIMA CollectionReader that reads in CASes from XMI files.

XMIReader() - Constructor for class org.apache.ctakes.core.cr.XMIReader

XmiWriterCasConsumerCtakes - Class in org.apache.ctakes.core.cc

A simple CAS consumer that writes the CAS to XMI format.

XmiWriterCasConsumerCtakes() - Constructor for class org.apache.ctakes.core.cc.XmiWriterCasConsumerCtakes

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