Index (Apache Taverna Server 3.1.0-incubating API)

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A

absent - Variable in class org.apache.taverna.server.client.port.OutputPort
AbsentValue - Class in org.apache.taverna.server.client.port: Java class for AbsentValue complex type.
AbsentValue() - Constructor for class org.apache.taverna.server.client.port.AbsentValue
AbsentValue - Class in org.apache.taverna.server.port_description
AbsentValue() - Constructor for class org.apache.taverna.server.port_description.AbsentValue
AbstractContents() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerInputREST.InDesc.AbstractContents
AbstractPort - Class in org.apache.taverna.server.port_description
AbstractPort() - Constructor for class org.apache.taverna.server.port_description.AbstractPort
AbstractPortDescription - Class in org.apache.taverna.server.port_description
AbstractPortDescription() - Constructor for class org.apache.taverna.server.port_description.AbstractPortDescription
AbstractRemoteRunFactory - Class in org.apache.taverna.server.master.localworker: Bridge to remote runs via RMI.
AbstractRemoteRunFactory() - Constructor for class org.apache.taverna.server.master.localworker.AbstractRemoteRunFactory: Set up the run expiry management engine.
AbstractValue - Class in org.apache.taverna.server.port_description
AbstractValue() - Constructor for class org.apache.taverna.server.port_description.AbstractValue
accepted - Variable in exception org.apache.taverna.server.master.rest.TavernaServerDirectoryREST.NegotiationFailedException
acceptUsageRecord(String) - Method in interface org.apache.taverna.server.localworker.server.UsageRecordReceiver: Called to push in a usage record.
ACCESS_SECRET_PROP - Static variable in class org.apache.taverna.server.master.notification.TwitterDispatcher
ACCESS_TOKEN_PROP - Static variable in class org.apache.taverna.server.master.notification.TwitterDispatcher
AccessDeniedHandler - Class in org.apache.taverna.server.master.rest.handler
AccessDeniedHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.AccessDeniedHandler
add(File) - Method in class org.apache.taverna.server.master.FileConcatenation
addCharge(float) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
addCpuDuration(long) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
addCredential(Credential) - Method in interface org.apache.taverna.server.master.interfaces.TavernaSecurityContext: Add a credential to the owned set or replaces the old version with the new one.
addCredential(TavernaServerSecurityREST.CredentialHolder, UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Adds a new credential.
addCredential(Credential) - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate
addCredentialToKeystore(Credential) - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate: Adds a credential to the current keystore.
addDisk(long) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
addDuration(long, String) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
addEntry(Entry) - Method in class org.apache.taverna.server.master.InteractionFeed
addEntry(Entry) - Method in interface org.apache.taverna.server.master.rest.InteractionFeedREST: Adds an entry to this ATOM feed.
addHost(String) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
additionalAuthenticationChecks(UserDetails, Object, Object) - Method in class org.apache.taverna.server.master.identity.WorkflowInternalAuthProvider: Check that the authentication request is actually valid for the given user record.
additionalAuthenticationChecks(UserDetails, UsernamePasswordAuthenticationToken) - Method in class org.apache.taverna.server.master.identity.WorkflowInternalAuthProvider
addKeypairToKeystore(String, Credential) - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate: Adds a credential to the current keystore.
addListener(RemoteListener) - Method in class org.apache.taverna.server.localworker.impl.LocalWorker
addListener(RemoteListener) - Method in interface org.apache.taverna.server.localworker.remote.RemoteSingleRun: Add a listener to the run.
addListener(Listener) - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun: Add a listener to the run.
addListener(ListenerDefinition, UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerListenersREST: Add a new event listener to the named workflow run.
addListener(Listener) - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
addMachine(String) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
addMemory(long) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
addNetwork(long) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
addNodeCount(int) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
addPort(String) - Method in class org.apache.taverna.server.port_description.InputDescription: Add an input port to the list of ports.
addPort(String) - Method in class org.apache.taverna.server.port_description.OutputDescription: Add an output port to the list of ports.
addProcessors(int) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
addProject(String) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
addQueue(String) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
addResource(ConsumableResourceType) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
addResource(ResourceType) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
addResource(String, String) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
addRunFeedEntry(TavernaRun, Entry) - Method in class org.apache.taverna.server.master.interaction.InteractionFeedSupport: Given a partial feed entry, store a complete feed entry in the filesystem for a particular run.
addRunListener(String, String, String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Adds an event listener to the run.
addRunListener(String, String, String) - Method in class org.apache.taverna.server.master.TavernaServer
addServiceLevel(String) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
addStartAndEnd(Date, Date) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
addSubmitHost(String) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
addSwap(long) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
addTimestamp(Date, String) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
addTrust(Trust, UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Adds a new trusted identity.
addTrusted(Trust) - Method in interface org.apache.taverna.server.master.interfaces.TavernaSecurityContext: Add an identity to the trusted set.
addTrusted(Trust) - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate
addUser(String, String, boolean) - Method in class org.apache.taverna.server.master.identity.UserStore
addUser(String, String, boolean) - Method in interface org.apache.taverna.server.master.identity.UserStoreAPI: Create a new user account; the account will be disabled and non-administrative by default.
addUser(String, String) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
addWallDuration(long) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
Admin - Interface in org.apache.taverna.server.master.admin: The administration interface for Taverna Server.
admin - Variable in class org.apache.taverna.server.master.admin.Admin.UserDesc
ADMIN - Static variable in interface org.apache.taverna.server.master.common.Namespaces
ADMIN - Static variable in interface org.apache.taverna.server.master.common.Roles: The role of an administrator.
Admin.AdminDescription - Class in org.apache.taverna.server.master.admin: The description of what properties are supported by the administration interface.
Admin.StringList - Class in org.apache.taverna.server.master.admin: A list of strings, as XML.
Admin.URList - Class in org.apache.taverna.server.master.admin: A list of usage records, as XML.
Admin.UserDesc - Class in org.apache.taverna.server.master.admin
Admin.UserList - Class in org.apache.taverna.server.master.admin: A list of users, as XML.
AdminBean - Class in org.apache.taverna.server.master.admin: The administration interface to Taverna Server.
AdminBean() - Constructor for class org.apache.taverna.server.master.admin.AdminBean
AdminDescription() - Constructor for class org.apache.taverna.server.master.admin.Admin.AdminDescription
AdminDescription(UriInfo) - Constructor for class org.apache.taverna.server.master.admin.Admin.AdminDescription
algorithm - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.CanonicalizationMethodType
algorithm - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.DigestMethodType
algorithm - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureMethodType
algorithm - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.TransformType
allowNew - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
any - Variable in class org.apache.taverna.server.client.generic.Workflow
appendContents(byte[]) - Method in class org.apache.taverna.server.localworker.impl.FileDelegate
appendContents(byte[]) - Method in interface org.apache.taverna.server.localworker.remote.RemoteFile: Append the data to the file.
appendContents(byte[]) - Method in interface org.apache.taverna.server.master.interfaces.File: Append the data to the file.
APPLICATION_ZIP_TYPE - Static variable in interface org.apache.taverna.server.master.api.ContentTypes: "application/zip"
assignment - Variable in class org.apache.taverna.server.master.rest.TavernaServerInputREST.InDesc: The assignment of input values to the port.
AtomFeed - Class in org.apache.taverna.server.master.notification.atom: Simple REST handler that allows an Atom feed to be served up of events generated by workflow runs.
AtomFeed() - Constructor for class org.apache.taverna.server.master.notification.atom.AtomFeed
authenticate(Authentication) - Method in class org.apache.taverna.server.master.identity.StrippedDownAuthProvider
AUTHORITY_PREFIX - Static variable in interface org.apache.taverna.server.master.defaults.Default: The default value of the prefix property.
AuthorityDerivedIDMapper - Class in org.apache.taverna.server.master.identity: Extracts the local user id from the set of Spring Security authorities granted to the current user.
AuthorityDerivedIDMapper() - Constructor for class org.apache.taverna.server.master.identity.AuthorityDerivedIDMapper

B

baclava - Variable in class org.apache.taverna.server.client.rest.TavernaRunInputs
baclava() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input
Baclava(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.Baclava: Create new instance using existing Client instance, and a base URI and any parameters
baclava - Variable in class org.apache.taverna.server.master.rest.TavernaServerInputREST.InputsDescriptor: Where to find the overall Baclava document filename (if set).
BACLAVA - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerInputREST.PathNames
BACLAVA_MEDIA_TYPE - Static variable in interface org.apache.taverna.server.master.api.ContentTypes: "application/vnd.taverna.baclava+xml"
baclavaFile - Variable in class org.apache.taverna.server.master.common.InputDescription: The Baclava file handling the description of the elements.
baclavaOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerInputREST: Get an outline of the operations supported.
BadInputPortNameException - Exception in org.apache.taverna.server.master.exceptions: Indicates that the port name was not recognized.
BadInputPortNameException(String) - Constructor for exception org.apache.taverna.server.master.exceptions.BadInputPortNameException
BadInputPortNameHandler - Class in org.apache.taverna.server.master.rest.handler
BadInputPortNameHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.BadInputPortNameHandler
BadPropertyValueException - Exception in org.apache.taverna.server.master.exceptions: Indicates a bad property value.
BadPropertyValueException(String) - Constructor for exception org.apache.taverna.server.master.exceptions.BadPropertyValueException
BadPropertyValueException(String, Throwable) - Constructor for exception org.apache.taverna.server.master.exceptions.BadPropertyValueException
BadPropertyValueHandler - Class in org.apache.taverna.server.master.rest.handler
BadPropertyValueHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.BadPropertyValueHandler
BadStateChangeException - Exception in org.apache.taverna.server.master.exceptions: Exception that is thrown to indicate that the state change requested for a run is impossible.
BadStateChangeException() - Constructor for exception org.apache.taverna.server.master.exceptions.BadStateChangeException
BadStateChangeException(Throwable) - Constructor for exception org.apache.taverna.server.master.exceptions.BadStateChangeException
BadStateChangeException(String, Throwable) - Constructor for exception org.apache.taverna.server.master.exceptions.BadStateChangeException
BadStateChangeException(String) - Constructor for exception org.apache.taverna.server.master.exceptions.BadStateChangeException
BadStateChangeHandler - Class in org.apache.taverna.server.master.rest.handler
BadStateChangeHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.BadStateChangeHandler
BASE_URI - Static variable in class org.apache.taverna.server.client.wadl.TavernaServer: The base URI for the resource represented by this proxy
benchmark - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.ExecutionHostType
BenchmarkType - Class in org.apache.taverna.server.usagerecord.xml.urf2: Open Grid Forum GFD.204 Usage Record type BenchmarkType
BenchmarkType() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf2.BenchmarkType
buildWorkflow(Workflow) - Method in class org.apache.taverna.server.master.TavernaServerSupport: Manufacture a workflow run instance.
byteLength - Variable in class org.apache.taverna.server.port_description.ErrorValue
byteLength - Variable in class org.apache.taverna.server.port_description.LeafValue

C

CachedUserStore() - Constructor for class org.apache.taverna.server.master.identity.UserStore.CachedUserStore
CallTimeLogger - Class in org.apache.taverna.server.master.utils: This class is responsible for timing all invocations of publicly-exposed methods of the webapp.
CallTimeLogger() - Constructor for class org.apache.taverna.server.master.utils.CallTimeLogger
CallTimeLogger.PerfLogged - Annotation Type in org.apache.taverna.server.master.utils: Mark methods that should be counted by the invocation counter.
CallTimingFilter - Class in org.apache.taverna.server.master.utils: Logs the time it takes to service HTTP calls into Taverna Server.
CallTimingFilter() - Constructor for class org.apache.taverna.server.master.utils.CallTimingFilter
canonicalizationMethod - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.SignedInfoType
CanonicalizationMethodType - Class in org.apache.taverna.server.usagerecord.xml.dsig: Java class for CanonicalizationMethodType complex type.
CanonicalizationMethodType() - Constructor for class org.apache.taverna.server.usagerecord.xml.dsig.CanonicalizationMethodType
Capabilities - Class in org.apache.taverna.server.client.rest: Java class for anonymous complex type.
Capabilities() - Constructor for class org.apache.taverna.server.client.rest.Capabilities
capabilities - Variable in class org.apache.taverna.server.client.rest.PolicyDescription
capabilities() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy
Capabilities(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.Capabilities: Create new instance using existing Client instance, and a base URI and any parameters
capabilities - Variable in class org.apache.taverna.server.master.rest.TavernaServerREST.PolicyView.PolicyDescription
Capability - Class in org.apache.taverna.server.client.generic: Java class for Capability complex type.
Capability() - Constructor for class org.apache.taverna.server.client.generic.Capability
capability - Variable in class org.apache.taverna.server.client.generic.Capability
capability - Variable in class org.apache.taverna.server.client.rest.Capabilities
Capability - Class in org.apache.taverna.server.master.common: Describes a single capability supported by Taverna Server's workflow execution core.
Capability() - Constructor for class org.apache.taverna.server.master.common.Capability
capability - Variable in class org.apache.taverna.server.master.common.Capability
capability - Variable in class org.apache.taverna.server.master.rest.TavernaServerREST.PolicyView.CapabilityList
CAPABILITY_RESOURCE_FILE - Static variable in class org.apache.taverna.server.master.utils.CapabilityLister
CapabilityList() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerREST.PolicyView.CapabilityList
CapabilityLister - Class in org.apache.taverna.server.master.utils: Utility for listing the capabilities supported by this Taverna Server installation.
CapabilityLister() - Constructor for class org.apache.taverna.server.master.utils.CapabilityLister
CERTIFICATE_FIELD_NAMES - Static variable in interface org.apache.taverna.server.master.defaults.Default: What fields of a certificate we look at when understanding who it is talking about, in the order that we look.
CERTIFICATE_TYPE - Static variable in interface org.apache.taverna.server.master.defaults.Default: The type of certificates that are processed if we don't say otherwise.
certificateBytes - Variable in class org.apache.taverna.server.client.generic.TrustDescriptor
certificateBytes - Variable in class org.apache.taverna.server.master.common.Trust: The encoded serialized keystore containing the certificate(s).
CertificateChainFetcher - Class in org.apache.taverna.server.master.utils: Obtains the certificate chain for an arbitrary SSL service.
CertificateChainFetcher() - Constructor for class org.apache.taverna.server.master.utils.CertificateChainFetcher
certificateFile - Variable in class org.apache.taverna.server.client.generic.TrustDescriptor
certificateFile - Variable in class org.apache.taverna.server.master.common.Trust: The file containing the certificate(s).
Charge - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type Charge
Charge() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.Charge
charge - Variable in class org.apache.taverna.server.usagerecord.xml.urf.UsageRecordType
charge - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType
charge - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType
charge - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkUsageBlockType
charge - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType
checkForFinishNow() - Method in class org.apache.taverna.server.master.worker.RunDatabase
checkForFinishNow() - Method in interface org.apache.taverna.server.master.worker.RunDBSupport: Scan each run to see if it has finished yet and issue registered notifications if it has.
checkForUnlimitedJCE() - Method in class org.apache.taverna.server.master.utils.JCECheck: Write a message to the log that says whether an unlimited strength cipher is present.
cleanNow() - Method in class org.apache.taverna.server.master.worker.RunDatabase
cleanNow() - Method in interface org.apache.taverna.server.master.worker.RunDBSupport: Remove currently-expired runs from this database.
close() - Method in interface org.apache.taverna.server.master.localworker.IdAwareForkRunFactory.MetaFactory: Shut down the meta-factory.
close() - Method in class org.apache.taverna.server.master.notification.JabberDispatcher
close() - Method in class org.apache.taverna.server.master.usage.UsageRecordRecorder
cloudUsageBlock - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecordType
CloudUsageBlockType - Class in org.apache.taverna.server.usagerecord.xml.urf2: Open Grid Forum GFD.204 Usage Record type CloudUsageBlock
CloudUsageBlockType() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType
CompletionNotifier - Interface in org.apache.taverna.server.master.worker: How to convert a notification about the completion of a job into a message.
CompositeIDMapper - Class in org.apache.taverna.server.master.identity: An identity mapper that composes the results from other mappers, using the identity mappers in order until one can provide a non-null answer.
CompositeIDMapper() - Constructor for class org.apache.taverna.server.master.identity.CompositeIDMapper
computeUsageBlock - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecordType
ComputeUsageBlockType - Class in org.apache.taverna.server.usagerecord.xml.urf2: Open Grid Forum GFD.204 Usage Record type ComputeUsageBlockType
ComputeUsageBlockType() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType
ConfigurableRunFactory - Interface in org.apache.taverna.server.master.factories: Interface to run factories for the purpose of configuration.
configuration - Variable in class org.apache.taverna.server.client.rest.ListenerDescription
configuration() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name
Configuration(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name.Configuration: Create new instance using existing Client instance, and a base URI and any parameters
configuration - Variable in class org.apache.taverna.server.master.rest.ListenerDefinition: How the event listener should be configured.
configuration - Variable in class org.apache.taverna.server.master.rest.TavernaServerListenersREST.ListenerDescription: The location of the configuration document for the event listener.
configurationOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerListenersREST.TavernaServerListenerREST: Get an outline of the operations supported.
connect(TavernaRun) - Method in interface org.apache.taverna.server.master.api.DirectoryBean
connect(TavernaRun, UriInfo) - Method in interface org.apache.taverna.server.master.api.InputBean
connect(Listener, TavernaRun, String) - Method in interface org.apache.taverna.server.master.api.ListenerPropertyBean
connect(TavernaRun) - Method in interface org.apache.taverna.server.master.api.ListenersBean
connect(Listener, TavernaRun) - Method in interface org.apache.taverna.server.master.api.OneListenerBean
connect(TavernaSecurityContext, TavernaRun) - Method in interface org.apache.taverna.server.master.api.SecurityBean
connectAuth(URI, String, String) - Method in class org.apache.taverna.server.client.TavernaServerConnectionFactory: Connect to the Taverna Server with the given authentication.
connectNoAuth(URI) - Method in class org.apache.taverna.server.client.TavernaServerConnectionFactory: Connect to the Taverna Server without authentication.
ConstantIDMapper - Class in org.apache.taverna.server.master.identity: A trivial principal to user mapper that always uses the same ID.
ConstantIDMapper() - Constructor for class org.apache.taverna.server.master.identity.ConstantIDMapper
Constants - Class in org.apache.taverna.server.localworker.api: The defaults associated with this worker, together with various other constants.
Constants() - Constructor for class org.apache.taverna.server.localworker.api.Constants
ConsumableResourceType - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type ConsumableResourceType
ConsumableResourceType() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.ConsumableResourceType
consumptionRate - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Processors
content - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.CanonicalizationMethodType
content - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.DigestMethodType
content - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.KeyInfoType
content - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.KeyValueType
content - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectType
content - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.PGPDataType
content - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureMethodType
content - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.SignaturePropertyType
content - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.TransformType
contentByteLength - Variable in class org.apache.taverna.server.client.port.LeafValue
contentFile - Variable in class org.apache.taverna.server.client.port.LeafValue
contents - Variable in class org.apache.taverna.server.master.rest.DirectoryContents: The contents of the directory.
contents - Variable in class org.apache.taverna.server.master.rest.MakeOrUpdateDirEntry: The contents of the file to upload.
contents - Variable in class org.apache.taverna.server.master.rest.TavernaServerInputREST.InDesc.AbstractContents: The contents of the description of the input port.
contents - Variable in class org.apache.taverna.server.port_description.ListValue
ContentsDescriptorBuilder - Class in org.apache.taverna.server.master: A class that is used to build descriptions of the contents of a workflow run's filesystem.
ContentsDescriptorBuilder() - Constructor for class org.apache.taverna.server.master.ContentsDescriptorBuilder
contentType - Variable in class org.apache.taverna.server.client.port.LeafValue
contentType - Variable in class org.apache.taverna.server.port_description.LeafValue
ContentTypes - Interface in org.apache.taverna.server.master.api: The content types supported at various points in the REST interface.
contextualize(String) - Method in class org.apache.taverna.server.master.utils.Contextualizer: Apply the contextualization operation.
contextualize(UriInfo, String) - Method in class org.apache.taverna.server.master.utils.Contextualizer: Apply the contextualization operation.
Contextualizer - Class in org.apache.taverna.server.master.utils: Convert a string (URL, etc) to a version that is contextualized to the web-application.
Contextualizer() - Constructor for class org.apache.taverna.server.master.utils.Contextualizer
convert(DirEntryReference) - Static method in class org.apache.taverna.server.master.soap.DirEntry: Converts from the "common" format to the subclasses of this class.
convert(DirEntry) - Static method in class org.apache.taverna.server.master.soap.DirEntry: Converts to the "common" format from the subclasses of this class.
conveyExtraSecuritySettings(RemoteSecurityContext) - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate: Hook that allows additional information to be conveyed to the remote run.
conveySecurity() - Method in interface org.apache.taverna.server.master.interfaces.TavernaSecurityContext: Transfer the security context to the remote system.
conveySecurity() - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate: Builds and transfers a keystore with suitable credentials to the back-end workflow execution engine.
copy(RemoteFile) - Method in class org.apache.taverna.server.localworker.impl.FileDelegate
copy(RemoteFile) - Method in interface org.apache.taverna.server.localworker.remote.RemoteFile: Copy from another file to this one.
copy(File) - Method in interface org.apache.taverna.server.master.interfaces.File: Asks for the argument file to be copied to this one.
copyDataToFile(DataHandler, File) - Method in class org.apache.taverna.server.master.TavernaServerSupport
copyDataToFile(URI, File) - Method in class org.apache.taverna.server.master.TavernaServerSupport
copyFromSudo(String, InputStream) - Method in class org.apache.taverna.server.unixforker.Forker
copyStreamToFile(InputStream, File) - Method in class org.apache.taverna.server.master.TavernaServerSupport
count() - Method in class org.apache.taverna.server.master.utils.InvocationCounter
countOperatingRuns() - Method in class org.apache.taverna.server.localworker.impl.TavernaRunManager
countOperatingRuns() - Method in interface org.apache.taverna.server.localworker.remote.RemoteRunFactory: Gets a count of the number of workflow runs that this factor knows about that are in the Operating state.
countRuns() - Method in class org.apache.taverna.server.master.worker.RunDatabase
countRuns() - Method in class org.apache.taverna.server.master.worker.RunDatabaseDAO
countRuns() - Method in interface org.apache.taverna.server.master.worker.RunDBSupport: How many runs are stored in the database.
CpuDuration - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type CpuDuration
CpuDuration() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.CpuDuration
cpuDuration - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType
create(UsernamePrincipal, Workflow) - Method in interface org.apache.taverna.server.master.factories.RunFactory: Make a Taverna Server workflow run that is bound to a particular user (the "creator") and able to run a particular workflow.
create(TavernaRun, UsernamePrincipal) - Method in interface org.apache.taverna.server.master.interfaces.SecurityContextFactory: Creates a security context.
create(UsernamePrincipal, Workflow) - Method in class org.apache.taverna.server.master.localworker.AbstractRemoteRunFactory
create(TavernaRun, UsernamePrincipal) - Method in class org.apache.taverna.server.master.worker.SecurityContextFactory
createAbsentValue() - Method in class org.apache.taverna.server.client.port.ObjectFactory: Create an instance of AbsentValue
createBenchmark(BenchmarkType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<BenchmarkType>}
createBenchmarkType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of BenchmarkType
createCanonicalizationMethod(CanonicalizationMethodType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<CanonicalizationMethodType>}
createCanonicalizationMethodType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of CanonicalizationMethodType
createCapabilities() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of Capabilities
createCapability() - Method in class org.apache.taverna.server.client.generic.ObjectFactory: Create an instance of Capability
createCapability(Capability) - Method in class org.apache.taverna.server.client.generic.ObjectFactory: Create an instance of JAXBElement<Capability>}
createCharge() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of Charge
createCharge(BigDecimal) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<BigDecimal>}
createClient() - Static method in class org.apache.taverna.server.client.wadl.TavernaServer: Create a new Client instance
createCloudUsageBlock(CloudUsageBlockType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<CloudUsageBlockType>}
createCloudUsageBlockType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of CloudUsageBlockType
createComputeUsageBlock(ComputeUsageBlockType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<ComputeUsageBlockType>}
createComputeUsageBlockType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of ComputeUsageBlockType
createConsumableResource(ConsumableResourceType) - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of JAXBElement<ConsumableResourceType>}
createConsumableResourceType() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of ConsumableResourceType
createCpuDuration() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of CpuDuration
createCpuDuration(Duration) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<Duration>}
createCreateTime(XMLGregorianCalendar) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<XMLGregorianCalendar>}
createCredential() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of Credential
createCredential(Credential) - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of JAXBElement<Credential>}
createCredentialCollection() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of CredentialCollection
createCredentialList() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of CredentialList
createCredentials(CredentialList) - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of JAXBElement<CredentialList>}
createDigestMethod(DigestMethodType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<DigestMethodType>}
createDigestMethodType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of DigestMethodType
createDigestValue(byte[]) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<byte[]>}
createDir(DirectoryReference) - Method in class org.apache.taverna.server.client.generic.ObjectFactory: Create an instance of JAXBElement<DirectoryReference>}
createDirectory(String) - Method in class org.apache.taverna.server.client.Directory
createDirectoryContents() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of DirectoryContents
createDirectoryContents(DirectoryContents) - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of JAXBElement<DirectoryContents>}
createDirectoryEntry() - Method in class org.apache.taverna.server.client.generic.ObjectFactory: Create an instance of DirectoryEntry
createDirectoryPath(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<String>}
createDirectoryReference() - Method in class org.apache.taverna.server.client.generic.ObjectFactory: Create an instance of DirectoryReference
createDisk() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of Disk
createDSAKeyValue(DSAKeyValueType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<DSAKeyValueType>}
createDSAKeyValueType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of DSAKeyValueType
createEnabledNotificationFabrics() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of EnabledNotificationFabrics
createEndTime() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of EndTime
createEndTime(XMLGregorianCalendar) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<XMLGregorianCalendar>}
createErrorValue() - Method in class org.apache.taverna.server.client.port.ObjectFactory: Create an instance of ErrorValue
createExecutionHost(ExecutionHostType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<ExecutionHostType>}
createExecutionHostType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of ExecutionHostType
createExitStatus(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<BigInteger>}
createFile(String, byte[]) - Method in class org.apache.taverna.server.client.Directory
createFile(String, File) - Method in class org.apache.taverna.server.client.Directory
createFile(String, URI) - Method in class org.apache.taverna.server.client.Directory
createFile(FileReference) - Method in class org.apache.taverna.server.client.generic.ObjectFactory: Create an instance of JAXBElement<FileReference>}
createFileCount(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<BigInteger>}
createFileReference() - Method in class org.apache.taverna.server.client.generic.ObjectFactory: Create an instance of FileReference
createFilesystemCreationOperation() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of FilesystemCreationOperation
createFilesystemOperation(FilesystemCreationOperation) - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of JAXBElement<FilesystemCreationOperation>}
createGlobalGroupAttribute(GlobalGroupAttributeType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<GlobalGroupAttributeType>}
createGlobalGroupAttributeType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of GlobalGroupAttributeType
createGlobalGroupId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<String>}
createGlobalJobId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<String>}
createGlobalUserId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<String>}
createGlobalVirtualMachineId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<String>}
createHost() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of Host
createHost(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<String>}
createHostname(HostnameType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<HostnameType>}
createHostnameType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of HostnameType
createHostType(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<String>}
createImageId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<String>}
createInfrastructure(InfrastructureType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<InfrastructureType>}
createInfrastructureType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of InfrastructureType
createInputDescription() - Method in class org.apache.taverna.server.client.port.ObjectFactory: Create an instance of InputDescription
createInputDescription(InputDescription) - Method in class org.apache.taverna.server.client.port.ObjectFactory: Create an instance of JAXBElement<InputDescription>}
createInputDescription() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of InputDescription
createInputDescriptionFile() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of InputDescription.File
createInputDescriptionReference() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of InputDescription.Reference
createInputDescriptionValue() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of InputDescription.Value
createInputPort() - Method in class org.apache.taverna.server.client.port.ObjectFactory: Create an instance of InputPort
createJobIdentity() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of JobIdentity
createJobName() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of JobName
createJobName(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<String>}
createJobUsageBlock(JobUsageBlockType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<JobUsageBlockType>}
createJobUsageBlockType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JobUsageBlockType
createJobUsageRecord() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of JobUsageRecord
createJobUsageRecord(JobUsageRecord) - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of JAXBElement<JobUsageRecord>}
createKeyInfo(KeyInfoType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<KeyInfoType>}
createKeyInfoType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of KeyInfoType
createKeyName(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<String>}
createKeypair(KeyPairCredential) - Method in class org.apache.taverna.server.client.generic.ObjectFactory: Create an instance of JAXBElement<KeyPairCredential>}
createKeyPairCredential() - Method in class org.apache.taverna.server.client.generic.ObjectFactory: Create an instance of KeyPairCredential
createKeyValue(KeyValueType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<KeyValueType>}
createKeyValueType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of KeyValueType
createLeafValue() - Method in class org.apache.taverna.server.client.port.ObjectFactory: Create an instance of LeafValue
createLinkedPermissionDescription() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of LinkedPermissionDescription
createListenerDefinition() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of ListenerDefinition
createListenerDefinition(ListenerDefinition) - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of JAXBElement<ListenerDefinition>}
createListenerDescription() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of ListenerDescription
createListenerDescription(ListenerDescription) - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of JAXBElement<ListenerDescription>}
createListenerDescriptionProperties() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of ListenerDescription.Properties
createListeners() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of Listeners
createListValue() - Method in class org.apache.taverna.server.client.port.ObjectFactory: Create an instance of ListValue
createLocalGroupId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<String>}
createLocalJobId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<String>}
createLocalUserId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<String>}
createLocalVirtualMachineId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<String>}
createLocation() - Method in class org.apache.taverna.server.client.generic.ObjectFactory: Create an instance of Location
createMachineName() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of MachineName
createMachineName(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<String>}
createMakeDirectory() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of MakeDirectory
createManifest(ManifestType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<ManifestType>}
createManifestType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of ManifestType
createMemory() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of Memory
createMemoryClass(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<String>}
createMemoryResourceCapacityAllocated(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<BigInteger>}
createMemoryResourceCapacityRequested(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<BigInteger>}
createMemoryResourceCapacityUsed(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<BigInteger>}
createMemoryUsageBlock(MemoryUsageBlockType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<MemoryUsageBlockType>}
createMemoryUsageBlockType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of MemoryUsageBlockType
createMgmtData(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<String>}
createMkdir(MakeDirectory) - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of JAXBElement<MakeDirectory>}
createNetwork() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of Network
createNetworkClass(NetworkClassType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<NetworkClassType>}
createNetworkClassType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of NetworkClassType
createNetworkInboundUsed(NetworkInboundUsedType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<NetworkInboundUsedType>}
createNetworkInboundUsedType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of NetworkInboundUsedType
createNetworkOutboundUsed(NetworkOutboundUsedType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<NetworkOutboundUsedType>}
createNetworkOutboundUsedType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of NetworkOutboundUsedType
createNetworkUsageBlock(NetworkUsageBlockType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<NetworkUsageBlockType>}
createNetworkUsageBlockType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of NetworkUsageBlockType
createNodeCount() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of NodeCount
createNodeCount(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<BigInteger>}
createObject(ObjectType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<ObjectType>}
createObjectType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of ObjectType
createOutputDescription() - Method in class org.apache.taverna.server.client.port.ObjectFactory: Create an instance of OutputDescription
createOutputPort() - Method in class org.apache.taverna.server.client.port.ObjectFactory: Create an instance of OutputPort
createPasswordCredential() - Method in class org.apache.taverna.server.client.generic.ObjectFactory: Create an instance of PasswordCredential
createPermissionDescription() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of PermissionDescription
createPermissionsDescription() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of PermissionsDescription
createPermissionsDescriptor(PermissionsDescription) - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of JAXBElement<PermissionsDescription>}
createPermissionUpdate(PermissionDescription) - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of JAXBElement<PermissionDescription>}
createPermittedListeners() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of PermittedListeners
createPermittedWorkflows() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of PermittedWorkflows
createPGPData(PGPDataType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<PGPDataType>}
createPGPDataType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of PGPDataType
createPGPDataTypePGPKeyID(byte[]) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<byte[]>}
createPGPDataTypePGPKeyPacket(byte[]) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<byte[]>}
createPhaseResource() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of PhaseResource
createPolicyDescription() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of PolicyDescription
createPort() - Method in class org.apache.taverna.server.client.port.ObjectFactory: Create an instance of Port
createProcessId(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<BigInteger>}
createProcessors() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of Processors
createProcessors(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<BigInteger>}
createProjectName() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of ProjectName
createProperties() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of Properties
createPropertyDescription() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of PropertyDescription
createQueue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of Queue
createQueue(QueueType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<QueueType>}
createQueueType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of QueueType
createRecordId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<String>}
createRecordIdentity() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of RecordIdentity
createRecordIdentityBlock(RecordIdentityBlockType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<RecordIdentityBlockType>}
createRecordIdentityBlockType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of RecordIdentityBlockType
createReference(ReferenceType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<ReferenceType>}
createReferenceType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of ReferenceType
createResource(ResourceType) - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of JAXBElement<ResourceType>}
createResourceType() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of ResourceType
createRetrievalMethod(RetrievalMethodType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<RetrievalMethodType>}
createRetrievalMethodType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of RetrievalMethodType
createRSAKeyValue(RSAKeyValueType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<RSAKeyValueType>}
createRSAKeyValueType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of RSAKeyValueType
createRunDescription() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of RunDescription
createRunDescriptionExpiry() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of RunDescription.Expiry
createRunDescriptionListeners() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of RunDescription.Listeners
createRunInput(InputDescription) - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of JAXBElement<InputDescription>}
createRunInputs(TavernaRunInputs) - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of JAXBElement<TavernaRunInputs>}
createRunList() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of RunList
createRunReference(TavernaRun) - Method in class org.apache.taverna.server.client.generic.ObjectFactory: Create an instance of JAXBElement<TavernaRun>}
createSecurityDescriptor() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of SecurityDescriptor
createSecurityDescriptor(SecurityDescriptor) - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of JAXBElement<SecurityDescriptor>}
createServerDescription() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of ServerDescription
createServiceLevel() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of ServiceLevel
createServiceLevel(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<String>}
createSignature(SignatureType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<SignatureType>}
createSignatureMethod(SignatureMethodType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<SignatureMethodType>}
createSignatureMethodType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of SignatureMethodType
createSignatureMethodTypeHMACOutputLength(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<BigInteger>}
createSignatureProperties(SignaturePropertiesType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<SignaturePropertiesType>}
createSignaturePropertiesType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of SignaturePropertiesType
createSignatureProperty(SignaturePropertyType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<SignaturePropertyType>}
createSignaturePropertyType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of SignaturePropertyType
createSignatureType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of SignatureType
createSignatureValue(SignatureValueType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<SignatureValueType>}
createSignatureValueType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of SignatureValueType
createSignedInfo(SignedInfoType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<SignedInfoType>}
createSignedInfoType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of SignedInfoType
createSite(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<String>}
createSPKIData(SPKIDataType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<SPKIDataType>}
createSPKIDataType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of SPKIDataType
createSPKIDataTypeSPKISexp(byte[]) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<byte[]>}
createStartTime() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of StartTime
createStartTime(XMLGregorianCalendar) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<XMLGregorianCalendar>}
createStatus() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of Status
createStatus(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<String>}
createStorageClass(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<String>}
createStorageLogicalCapacityUsed(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<BigInteger>}
createStorageMedia(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<String>}
createStorageResourceCapacityAllocated(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<BigInteger>}
createStorageResourceCapacityUsed(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<BigInteger>}
createStorageShare(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<String>}
createStorageUsageBlock(StorageUsageBlockType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<StorageUsageBlockType>}
createStorageUsageBlockType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of StorageUsageBlockType
createSubjectIdentityBlock(SubjectIdentityBlockType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<SubjectIdentityBlockType>}
createSubjectIdentityBlockType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of SubjectIdentityBlockType
createSubmitHost() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of SubmitHost
createSubmitHost(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<String>}
createSubmitType(SubmitTypeType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<SubmitTypeType>}
createSubmitTypeType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of SubmitTypeType
createSuspendDuration(Duration) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<Duration>}
createSwap() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of Swap
createTavernaRun() - Method in class org.apache.taverna.server.client.generic.ObjectFactory: Create an instance of TavernaRun
createTavernaRunInputs() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of TavernaRunInputs
createTime - Variable in class org.apache.taverna.server.client.rest.RunDescription
createTime() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName
CreateTime(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.CreateTime: Create new instance using existing Client instance, and a base URI and any parameters
createTime - Variable in class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription: The location of the creation time property.
createTime - Variable in class org.apache.taverna.server.usagerecord.xml.urf.RecordIdentity
createTime - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.RecordIdentityBlockType
createTimeDuration() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of TimeDuration
createTimeInstant() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of TimeInstant
createTimeInstant(TimeInstantType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<TimeInstantType>}
createTimeInstantType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of TimeInstantType
createTimeOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Get an outline of the operations supported.
createTransform(TransformType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<TransformType>}
createTransforms(TransformsType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<TransformsType>}
createTransformsType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of TransformsType
createTransformType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of TransformType
createTransformTypeXPath(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<String>}
createTrustCollection() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of TrustCollection
createTrustDescriptor() - Method in class org.apache.taverna.server.client.generic.ObjectFactory: Create an instance of TrustDescriptor
createTrustedIdentities(TrustList) - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of JAXBElement<TrustList>}
createTrustedIdentity(TrustDescriptor) - Method in class org.apache.taverna.server.client.generic.ObjectFactory: Create an instance of JAXBElement<TrustDescriptor>}
createTrustList() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of TrustList
createUpload(UploadFile) - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of JAXBElement<UploadFile>}
createUploadFile() - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of UploadFile
createUsage(UsageRecordType) - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of JAXBElement<UsageRecordType>}
createUsage(UsageRecordType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<UsageRecordType>}
createUsageRecord(UsageRecordType) - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of JAXBElement<UsageRecordType>}
createUsageRecord(UsageRecordType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<UsageRecordType>}
createUsageRecords() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of UsageRecords
createUsageRecords() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of UsageRecords
createUsageRecordType() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of UsageRecordType
createUsageRecordType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of UsageRecordType
createUserIdentity() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of UserIdentity
createUserpass(PasswordCredential) - Method in class org.apache.taverna.server.client.generic.ObjectFactory: Create an instance of JAXBElement<PasswordCredential>}
createUserPermission(LinkedPermissionDescription) - Method in class org.apache.taverna.server.client.rest.ObjectFactory: Create an instance of JAXBElement<LinkedPermissionDescription>}
createVolumeResource() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of VolumeResource
createWallDuration() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create an instance of WallDuration
createWallDuration(Duration) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create an instance of JAXBElement<Duration>}
createWorkflow() - Method in class org.apache.taverna.server.client.generic.ObjectFactory: Create an instance of Workflow
createWorkflow(Workflow) - Method in class org.apache.taverna.server.client.generic.ObjectFactory: Create an instance of JAXBElement<Workflow>}
createWorkflowOutputs(OutputDescription) - Method in class org.apache.taverna.server.client.port.ObjectFactory: Create an instance of JAXBElement<OutputDescription>}
createWorkflowRun(byte[]) - Method in class org.apache.taverna.server.client.TavernaServer: Create a new Run by uploading the bytes of a t2flow workflow definition.
createWorkflowRun(File) - Method in class org.apache.taverna.server.client.TavernaServer: Create a new Run by uploading a local t2flow workflow definition File.
createWorkflowRun(URI) - Method in class org.apache.taverna.server.client.TavernaServer: Create a new Run by referencing an external t2flow workflow definition URI.
createX509Data(X509DataType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<X509DataType>}
createX509DataType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of X509DataType
createX509DataTypeX509Certificate(byte[]) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<byte[]>}
createX509DataTypeX509CRL(byte[]) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<byte[]>}
createX509DataTypeX509IssuerSerial(X509IssuerSerialType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<X509IssuerSerialType>}
createX509DataTypeX509SKI(byte[]) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<byte[]>}
createX509DataTypeX509SubjectName(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of JAXBElement<String>}
createX509IssuerSerialType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create an instance of X509IssuerSerialType
creationWorkflow - Variable in class org.apache.taverna.server.client.rest.RunDescription
creationWorkflow - Variable in class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription: The location of the creation workflow description.
Credential - Class in org.apache.taverna.server.client.rest: Java class for Credential complex type.
Credential() - Constructor for class org.apache.taverna.server.client.rest.Credential
credential - Variable in class org.apache.taverna.server.client.rest.CredentialCollection
credential - Variable in class org.apache.taverna.server.client.rest.CredentialList
Credential - Class in org.apache.taverna.server.master.common: A description of a private credential.
Credential() - Constructor for class org.apache.taverna.server.master.common.Credential
credential - Variable in class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.CredentialHolder: The credential inside this holder.
credential - Variable in class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.CredentialList: The descriptions of the credentials
credential - Variable in class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.Descriptor.Credentials: Descriptions of the credentials themselves.
Credential.Dummy - Class in org.apache.taverna.server.master.common: A credential that is just used for deleting credentials by ID.
Credential.KeyPair - Class in org.apache.taverna.server.master.common: A description of a credential that is a public/private key-pair in some kind of key store.
Credential.Password - Class in org.apache.taverna.server.master.common: A description of a credential that is a username and password.
CREDENTIAL_FILE_SIZE_LIMIT - Static variable in interface org.apache.taverna.server.master.defaults.Default: Max size of credential file, in kiB.
CREDENTIAL_MANAGER_DIRECTORY - Static variable in class org.apache.taverna.server.localworker.api.Constants: Used to instruct the Taverna credential manager to use a non-default location for user credentials.
CREDENTIAL_MANAGER_PASSWORD - Static variable in class org.apache.taverna.server.localworker.api.Constants: Used to instruct the Taverna credential manager to take its master password from standard input.
credentialBytes - Variable in class org.apache.taverna.server.client.generic.KeyPairCredential
credentialBytes - Variable in class org.apache.taverna.server.master.common.Credential.KeyPair: The encoded serialized keystore containing the credential.
CredentialCollection - Class in org.apache.taverna.server.client.rest: Java class for CredentialCollection complex type.
CredentialCollection() - Constructor for class org.apache.taverna.server.client.rest.CredentialCollection
CredentialDescriptor - Class in org.apache.taverna.server.client.generic: Java class for CredentialDescriptor complex type.
CredentialDescriptor() - Constructor for class org.apache.taverna.server.client.generic.CredentialDescriptor
credentialFile - Variable in class org.apache.taverna.server.client.generic.KeyPairCredential
credentialFile - Variable in class org.apache.taverna.server.master.common.Credential.KeyPair: The keystore file containing the credential.
CredentialHolder() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.CredentialHolder
CredentialHolder(Credential) - Constructor for class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.CredentialHolder
CredentialList - Class in org.apache.taverna.server.client.rest: Java class for credentialList complex type.
CredentialList() - Constructor for class org.apache.taverna.server.client.rest.CredentialList
CredentialList() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.CredentialList
CredentialList(Credential[]) - Constructor for class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.CredentialList: Initialise the list of credentials.
credentialName - Variable in class org.apache.taverna.server.client.generic.KeyPairCredential
credentialName - Variable in class org.apache.taverna.server.master.common.Credential.KeyPair: The name of the credential within its store, i.e., it's alias.
credentialOptions(String) - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Get an outline of the operations supported.
credentials - Variable in class org.apache.taverna.server.client.rest.SecurityDescriptor
credentials() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security
Credentials(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Credentials: Create new instance using existing Client instance, and a base URI and any parameters
credentials - Variable in class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.Descriptor: Characterisation of the credentials attached to the run.
Credentials() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.Descriptor.Credentials
Credentials(URI, Credential[]) - Constructor for class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.Descriptor.Credentials: Initialise a description of the credentials.
credentialsId(String) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security
CredentialsId(Client, URI, String) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.CredentialsId: Create new instance using existing Client instance, and a base URI and any parameters
CredentialsId(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.CredentialsId: Create new instance using existing Client instance, and the URI from which the parameters will be extracted
credentialsOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Get an outline of the operations supported.
CREDS - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST.PathNames
currentRuns - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
currentRuns() - Method in interface org.apache.taverna.server.master.admin.Admin: The property for the list of IDs of current runs.
currentRuns() - Method in class org.apache.taverna.server.master.admin.AdminBean

D

DATA - Static variable in interface org.apache.taverna.server.port_description.Namespaces
DEATH_DELAY - Static variable in class org.apache.taverna.server.localworker.api.Constants: Time to wait during closing down this process.
DEATH_TIME - Static variable in class org.apache.taverna.server.localworker.api.Constants: Time to wait for success or failure of a death-causing activity (i.e., sending a signal).
Default - Interface in org.apache.taverna.server.master.defaults: This defines a collection of default values, collecting them from various parts of the server.
DEFAULT_GENERATE_PROVENANCE - Static variable in class org.apache.taverna.server.master.localworker.LocalWorkerState
DEFAULT_LISTENER_NAME - Static variable in class org.apache.taverna.server.localworker.api.Constants: The name of the standard listener, which is installed by default.
defaultLifetime - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
delete() - Method in class org.apache.taverna.server.client.DirEntry
delete(T) - Method in class org.apache.taverna.server.master.utils.JDOSupport: Delete a persistence-coupled instance of the context class.
deleteAllCredentials(UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Deletes all credentials associated with a run.
deleteAllTrusts(UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Deletes all trusted identities associated with a run.
deleteAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path2: Deletes a file or directory that is in or below the working directory of a workflow run.
deleteAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path2: Deletes a file or directory that is in or below the working directory of a workflow run.
deleteAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName: Deletes a workflow run.
deleteAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName: Deletes a workflow run.
deleteAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Credentials: Deletes all credentials.
deleteAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Credentials: Deletes all credentials.
deleteAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.CredentialsId: Deletes a particular credential.
deleteAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.CredentialsId: Deletes a particular credential.
deleteAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.PermissionsId: Deletes (by resetting to default) the permissions associated with a particular user.
deleteAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.PermissionsId: Deletes (by resetting to default) the permissions associated with a particular user.
deleteAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Trusts: Deletes all trusted identities.
deleteAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Trusts: Deletes all trusted identities.
deleteAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.TrustsId: Deletes a particular trusted identity.
deleteAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.TrustsId: Deletes a particular trusted identity.
deleteAsTextPlain(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Interaction.Id: Deletes an entry from this ATOM feed.
deleteAsTextPlain(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Interaction.Id: Deletes an entry from this ATOM feed.
deleteAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path2: Deletes a file or directory that is in or below the working directory of a workflow run.
deleteAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path2: Deletes a file or directory that is in or below the working directory of a workflow run.
deleteCredential(Credential) - Method in interface org.apache.taverna.server.master.interfaces.TavernaSecurityContext: Remove a credential from the owned set.
deleteCredential(String, UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Deletes one credential associated with a run.
deleteCredential(Credential) - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate
deleteEntry(String) - Method in class org.apache.taverna.server.master.InteractionFeed
deleteEntry(String) - Method in interface org.apache.taverna.server.master.rest.InteractionFeedREST: Delete an entry from this ATOM feed.
deleteEventById(String) - Method in class org.apache.taverna.server.master.notification.atom.EventDAO: Delete a particular event.
deleteExpiredEvents() - Method in class org.apache.taverna.server.master.notification.atom.EventDAO: Delete all events that have expired.
deleteLocalResources() - Method in interface org.apache.taverna.server.localworker.api.Worker: Arrange for the deletion of any resources created during worker process construction.
deleteLocalResources() - Method in class org.apache.taverna.server.localworker.impl.WorkerCore
deletePermission(String, UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Delete the permissions associated with a user, which restores them to the default (no access unless they are the owner or have admin privileges).
deleteRunCertificates(String, String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Delete a certificate collection associated with the run.
deleteRunCertificates(String, String) - Method in class org.apache.taverna.server.master.TavernaServer
deleteRunCredential(String, String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Delete a credential associated with the run.
deleteRunCredential(String, String) - Method in class org.apache.taverna.server.master.TavernaServer
deleteTrust(String, UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Deletes one trusted identity associated with a run.
deleteTrusted(Trust) - Method in interface org.apache.taverna.server.master.interfaces.TavernaSecurityContext: Remove an identity from the trusted set.
deleteTrusted(Trust) - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate
deleteUser(String) - Method in class org.apache.taverna.server.master.identity.UserStore
deleteUser(String) - Method in interface org.apache.taverna.server.master.identity.UserStoreAPI: Delete a server account.
delimiter - Variable in class org.apache.taverna.server.master.common.InputDescription.Port: The file assigned to this port.
delimiter - Variable in class org.apache.taverna.server.master.rest.TavernaServerInputREST.InDesc: The character to use to split the input into a list.
depth - Variable in class org.apache.taverna.server.client.port.ErrorValue
depth - Variable in class org.apache.taverna.server.client.port.Port
depth - Variable in class org.apache.taverna.server.port_description.AbstractPort
depth - Variable in class org.apache.taverna.server.port_description.ErrorValue
DerbyUtils - Class in org.apache.taverna.server.master.utils: Utility class, used to make Derby less broken.
DerbyUtils() - Constructor for class org.apache.taverna.server.master.utils.DerbyUtils
describe(UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Gets a description of the security information supported by the workflow run.
describePermission(String) - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Describe the particular permission granted to a user.
describePermissions(UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST
describeService(UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerREST: Produces the description of the service.
describeService(UriInfo) - Method in class org.apache.taverna.server.master.TavernaServer
description - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Charge
description - Variable in class org.apache.taverna.server.usagerecord.xml.urf.ConsumableResourceType
description - Variable in class org.apache.taverna.server.usagerecord.xml.urf.CpuDuration
description - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Disk
description - Variable in class org.apache.taverna.server.usagerecord.xml.urf.EndTime
description - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Host
description - Variable in class org.apache.taverna.server.usagerecord.xml.urf.JobName
description - Variable in class org.apache.taverna.server.usagerecord.xml.urf.MachineName
description - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Memory
description - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Network
description - Variable in class org.apache.taverna.server.usagerecord.xml.urf.NodeCount
description - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Processors
description - Variable in class org.apache.taverna.server.usagerecord.xml.urf.ProjectName
description - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Queue
description - Variable in class org.apache.taverna.server.usagerecord.xml.urf.ResourceType
description - Variable in class org.apache.taverna.server.usagerecord.xml.urf.StartTime
description - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Status
description - Variable in class org.apache.taverna.server.usagerecord.xml.urf.SubmitHost
description - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Swap
description - Variable in class org.apache.taverna.server.usagerecord.xml.urf.WallDuration
description - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.InfrastructureType
description - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.QueueType
description - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.SubmitTypeType
descriptionOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Get an outline of the operations supported.
Descriptor() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.Descriptor
Descriptor(UriBuilder, String, Credential[], Trust[]) - Constructor for class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.Descriptor: Initialise a description of the security context.
descriptorRef - Variable in class org.apache.taverna.server.client.rest.InputDescription
descriptorRef - Variable in class org.apache.taverna.server.master.rest.TavernaServerInputREST.InDesc: Where the port is described.
destinationAddress - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkOutboundUsedType
destroy() - Method in class org.apache.taverna.server.localworker.impl.DirectoryDelegate
destroy() - Method in class org.apache.taverna.server.localworker.impl.FileDelegate
destroy() - Method in class org.apache.taverna.server.localworker.impl.LocalWorker
destroy() - Method in interface org.apache.taverna.server.localworker.remote.RemoteDirectoryEntry: Destroy this directory entry, deleting the file or sub-directory.
destroy() - Method in interface org.apache.taverna.server.localworker.remote.RemoteSingleRun: Kill off this run, removing all resources which it consumes.
destroy() - Method in interface org.apache.taverna.server.master.interfaces.DirectoryEntry: Destroy this directory entry, deleting the file or sub-directory.
destroy() - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun: Kill off this run, removing all resources which it consumes.
destroy() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Deletes a workflow run.
destroy() - Method in class org.apache.taverna.server.master.utils.CallTimingFilter
destroy() - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
destroyDirectoryEntry(List<PathSegment>) - Method in interface org.apache.taverna.server.master.rest.TavernaServerDirectoryREST: Deletes a file or directory that is in or below the working directory of a workflow run.
destroyRun(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Destroy a run immediately.
destroyRun(String) - Method in class org.apache.taverna.server.master.TavernaServer
destroyRunDirectoryEntry(String, DirEntry) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Destroy an entry (file or directory) in or beneath a run's working directory.
destroyRunDirectoryEntry(String, DirEntry) - Method in class org.apache.taverna.server.master.TavernaServer
detach(T) - Method in class org.apache.taverna.server.master.utils.JDOSupport: Make a non-persistent (i.e., will hold its value past the end of the transaction) copy of a persistence-coupled instance of the context class.
DEV_NULL - Static variable in class org.apache.taverna.server.master.utils.DerbyUtils
digestMethod - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.ReferenceType
DigestMethodType - Class in org.apache.taverna.server.usagerecord.xml.dsig: Java class for DigestMethodType complex type.
DigestMethodType() - Constructor for class org.apache.taverna.server.usagerecord.xml.dsig.DigestMethodType
digestValue - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.ReferenceType
DIR - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerRunREST.PathNames
Directory - Class in org.apache.taverna.server.client
Directory - Interface in org.apache.taverna.server.master.interfaces: Represents a directory that is the working directory of a workflow run, or a sub-directory of it.
Directory() - Constructor for class org.apache.taverna.server.master.soap.DirEntry.Directory
Directory.ZipStream - Class in org.apache.taverna.server.master.interfaces: A simple pipe that produces the zipped contents of a directory.
DIRECTORY_VARIANTS - Static variable in interface org.apache.taverna.server.master.api.ContentTypes: The media types that we are willing to serve up directories as.
DirectoryBean - Interface in org.apache.taverna.server.master.api: Description of properties supported by DirectoryREST.
DirectoryContents - Class in org.apache.taverna.server.client.rest: Java class for DirectoryContents complex type.
DirectoryContents() - Constructor for class org.apache.taverna.server.client.rest.DirectoryContents
DirectoryContents - Class in org.apache.taverna.server.master.rest: The result of a RESTful operation to list the contents of a directory.
DirectoryContents() - Constructor for class org.apache.taverna.server.master.rest.DirectoryContents: Make an empty directory description.
DirectoryContents(UriInfo, Collection<DirectoryEntry>) - Constructor for class org.apache.taverna.server.master.rest.DirectoryContents: Make a directory description.
DirectoryDelegate - Class in org.apache.taverna.server.localworker.impl: This class acts as a remote-aware delegate for the workflow run's working directory and its subdirectories.
DirectoryDelegate(File, DirectoryDelegate) - Constructor for class org.apache.taverna.server.localworker.impl.DirectoryDelegate
DirectoryEntry - Class in org.apache.taverna.server.client.generic: Java class for DirectoryEntry complex type.
DirectoryEntry() - Constructor for class org.apache.taverna.server.client.generic.DirectoryEntry
DirectoryEntry - Interface in org.apache.taverna.server.master.interfaces: An entry in a Directory representing a file or sub-directory.
directoryPath - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType
DirectoryReference - Class in org.apache.taverna.server.client.generic: Java class for DirectoryReference complex type.
DirectoryReference() - Constructor for class org.apache.taverna.server.client.generic.DirectoryReference
DirectoryReference() - Constructor for class org.apache.taverna.server.master.common.DirEntryReference.DirectoryReference
DirEntry - Class in org.apache.taverna.server.client
DirEntry(Run, String) - Constructor for class org.apache.taverna.server.client.DirEntry
DirEntry - Class in org.apache.taverna.server.master.soap: A more Taverna-friendly version of the directory entry descriptor classes.
DirEntry() - Constructor for class org.apache.taverna.server.master.soap.DirEntry
DirEntry.Directory - Class in org.apache.taverna.server.master.soap: A directory in a directory.
DirEntry.File - Class in org.apache.taverna.server.master.soap: A file in a directory.
DirEntryReference - Class in org.apache.taverna.server.master.common: A reference to something that is in a directory below the working directory of a workflow run, described using JAXB.
DirEntryReference() - Constructor for class org.apache.taverna.server.master.common.DirEntryReference
DirEntryReference.DirectoryReference - Class in org.apache.taverna.server.master.common: A reference to a directory, done with JAXB.
DirEntryReference.FileReference - Class in org.apache.taverna.server.master.common: A reference to a file, done with JAXB.
dirOrFile - Variable in class org.apache.taverna.server.client.rest.DirectoryContents
Disk - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type Disk
Disk() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.Disk
diskOrMemoryOrSwap - Variable in class org.apache.taverna.server.usagerecord.xml.urf.UsageRecordType
dispatch(TavernaRun, String, String, String) - Method in interface org.apache.taverna.server.master.interfaces.MessageDispatcher: Dispatch a message to a recipient.
dispatch(TavernaRun, String, String, String) - Method in class org.apache.taverna.server.master.notification.atom.EventDAO
dispatch(String, String, String) - Method in class org.apache.taverna.server.master.notification.EmailDispatcher
dispatch(TavernaRun, String, String, String) - Method in class org.apache.taverna.server.master.notification.JabberDispatcher
dispatch(TavernaRun, String, String, String) - Method in class org.apache.taverna.server.master.notification.RateLimitedDispatcher
dispatch(String, String, String) - Method in class org.apache.taverna.server.master.notification.RateLimitedDispatcher: Dispatch a message to a recipient that doesn't care what produced it.
dispatch(String, String, String) - Method in class org.apache.taverna.server.master.notification.SMSDispatcher
dispatch(String, String, String) - Method in class org.apache.taverna.server.master.notification.TwitterDispatcher
dispatchMessage(TavernaRun, String, NotificationEngine.Message) - Method in class org.apache.taverna.server.master.notification.NotificationEngine: Dispatch a message over the notification fabric.
doClean() - Method in class org.apache.taverna.server.master.worker.RunDatabaseDAO: Remove all workflow runs that have expired.
doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class org.apache.taverna.server.master.utils.CallTimingFilter
doFilter(HttpServletRequest, HttpServletResponse, FilterChain) - Method in class org.apache.taverna.server.master.utils.CallTimingFilter
doIt() - Method in class org.apache.taverna.server.localworker.impl.utils.TimingOutTask
done() - Method in class org.apache.taverna.server.master.common.Uri.Rewriter
doOrTimeOut(long) - Method in class org.apache.taverna.server.localworker.impl.utils.TimingOutTask
DSAKeyValueType - Class in org.apache.taverna.server.usagerecord.xml.dsig: Java class for DSAKeyValueType complex type.
DSAKeyValueType() - Constructor for class org.apache.taverna.server.usagerecord.xml.dsig.DSAKeyValueType
Dummy(String) - Constructor for class org.apache.taverna.server.master.common.Credential.Dummy

E

ELLIPSIS - Static variable in class org.apache.taverna.server.master.notification.TwitterDispatcher
EmailDispatcher - Class in org.apache.taverna.server.master.notification: How to send a plain text message by email to someone.
EmailDispatcher() - Constructor for class org.apache.taverna.server.master.notification.EmailDispatcher
enabled - Variable in class org.apache.taverna.server.master.admin.Admin.UserDesc
EnabledNotificationFabrics - Class in org.apache.taverna.server.client.rest: Java class for anonymous complex type.
EnabledNotificationFabrics() - Constructor for class org.apache.taverna.server.client.rest.EnabledNotificationFabrics
enabledNotificationFabrics - Variable in class org.apache.taverna.server.client.rest.PolicyDescription
enabledNotificationFabrics() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy
EnabledNotificationFabrics(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.EnabledNotificationFabrics: Create new instance using existing Client instance, and a base URI and any parameters
EnabledNotificationFabrics() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerREST.EnabledNotificationFabrics: Make an empty list of enabled notifiers.
EnabledNotificationFabrics(List<String>) - Constructor for class org.apache.taverna.server.master.rest.TavernaServerREST.EnabledNotificationFabrics: Make a list of enabled notifiers.
enabledNotificationFabrics - Variable in class org.apache.taverna.server.master.rest.TavernaServerREST.PolicyView.PolicyDescription: How notifications may be sent.
encoding - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectType
EndTime - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type EndTime
EndTime() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.EndTime
endTime - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType
endTime - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType
endTime - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType
EntryHandler - Class in org.apache.taverna.server.master.rest.handler
EntryHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.EntryHandler
entryOptions(String) - Method in class org.apache.taverna.server.master.InteractionFeed
entryOptions(String) - Method in interface org.apache.taverna.server.master.rest.InteractionFeedREST: Handles the OPTIONS request.
equals(Object) - Method in class org.apache.taverna.server.master.common.Credential
equals(Credential) - Method in class org.apache.taverna.server.master.common.Credential
equals(Object) - Method in class org.apache.taverna.server.master.common.Trust
equals(Object) - Method in class org.apache.taverna.server.master.utils.UsernamePrincipal
error - Variable in class org.apache.taverna.server.client.port.OutputPort
errorByteLength - Variable in class org.apache.taverna.server.client.port.ErrorValue
errorFile - Variable in class org.apache.taverna.server.client.port.ErrorValue
ErrorValue - Class in org.apache.taverna.server.client.port: Java class for ErrorValue complex type.
ErrorValue() - Constructor for class org.apache.taverna.server.client.port.ErrorValue
ErrorValue - Class in org.apache.taverna.server.port_description
ErrorValue() - Constructor for class org.apache.taverna.server.port_description.ErrorValue
Event - Class in org.apache.taverna.server.master.notification.atom: Parent class of all events that may appear on the feed for a workflow run.
EventDAO - Class in org.apache.taverna.server.master.notification.atom: The database interface that supports the event feed.
EventDAO() - Constructor for class org.apache.taverna.server.master.notification.atom.EventDAO
executeWorkflowScript - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
executionHost - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType
executionHost - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType
ExecutionHostType - Class in org.apache.taverna.server.usagerecord.xml.urf2: Open Grid Forum GFD.204 Usage Record type ExecutionHostType
ExecutionHostType() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf2.ExecutionHostType
exitStatus - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType
expected - Variable in class org.apache.taverna.server.client.rest.TavernaRunInputs
expected() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input
Expected(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.Expected: Create new instance using existing Client instance, and a base URI and any parameters
expected - Variable in class org.apache.taverna.server.master.rest.TavernaServerInputREST.InputsDescriptor: Where to find a description of the expected inputs to this workflow run.
EXPECTED - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerInputREST.PathNames
expectedOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerInputREST: Get an outline of the operations supported.
expiry - Variable in class org.apache.taverna.server.client.rest.RunDescription
Expiry() - Constructor for class org.apache.taverna.server.client.rest.RunDescription.Expiry
expiry() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName
Expiry(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Expiry: Create new instance using existing Client instance, and a base URI and any parameters
expiry - Variable in class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription: The description of the expiry.
Expiry() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription.Expiry: Make a blank expiry description.
expiryOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Get an outline of the operations supported.
exponent - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.RSAKeyValueType
EXTRA_ARGUMENTS - Static variable in interface org.apache.taverna.server.master.defaults.Default: The extra arguments to pass to the subprocess.
extraArguments - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription

F

Facade - Class in org.apache.taverna.server.master.facade: This is a simple class that is used to serve up a file (with a simple substitution applied) as the root of the T2Server webapp.
Facade() - Constructor for class org.apache.taverna.server.master.facade.Facade
FactoryBean - Interface in org.apache.taverna.server.master.worker: What the remote run really needs of its factory.
factoryProcessMapping - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
factoryProcessMapping() - Method in interface org.apache.taverna.server.master.admin.Admin: The property for the mapping of usernames to factory process handles.
factoryProcessMapping() - Method in class org.apache.taverna.server.master.admin.AdminBean
feed - Variable in class org.apache.taverna.server.client.rest.ServerDescription
FEED - Static variable in interface org.apache.taverna.server.master.common.Namespaces
feed - Variable in class org.apache.taverna.server.master.rest.TavernaServerREST.ServerDescription: Reference to the Atom event feed produced by this server.
FEED_DIR - Static variable in class org.apache.taverna.server.master.interaction.InteractionFeedSupport: The name of the directory below the run working directory that will contain the entries of the interaction feed.
FEED_URL_DIR - Static variable in class org.apache.taverna.server.master.interaction.InteractionFeedSupport: The name of the resource within the run resource that is the run's interaction feed resource.
FeedBean - Interface in org.apache.taverna.server.master.api: Description of properties supported by InteractionFeed.
FeedHandler - Class in org.apache.taverna.server.master.rest.handler
FeedHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.FeedHandler
feedOptions() - Method in class org.apache.taverna.server.master.InteractionFeed
feedOptions() - Method in interface org.apache.taverna.server.master.rest.InteractionFeedREST: Handles the OPTIONS request.
File - Class in org.apache.taverna.server.client
file - Variable in class org.apache.taverna.server.client.rest.InputDescription
File() - Constructor for class org.apache.taverna.server.client.rest.InputDescription.File
file - Variable in class org.apache.taverna.server.master.common.InputDescription.Port: The file assigned to this port.
File - Interface in org.apache.taverna.server.master.interfaces: Represents a file in the working directory of a workflow instance run, or in some sub-directory of it.
file - Variable in class org.apache.taverna.server.master.rest.FileSegment: The file to read a segment of.
File() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerInputREST.InDesc.File
File() - Constructor for class org.apache.taverna.server.master.soap.DirEntry.File
FileConcatenation - Class in org.apache.taverna.server.master: Simple concatenation of files.
FileConcatenation() - Constructor for class org.apache.taverna.server.master.FileConcatenation
FileConcatenationHandler - Class in org.apache.taverna.server.master.rest.handler
FileConcatenationHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.FileConcatenationHandler
FileContents - Class in org.apache.taverna.server.master.soap: An MTOM-capable description of how to transfer the contents of a file.
FileContents() - Constructor for class org.apache.taverna.server.master.soap.FileContents
fileCount - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType
fileData - Variable in class org.apache.taverna.server.master.soap.FileContents
fileData - Variable in class org.apache.taverna.server.master.soap.ZippedDirectory
FileDelegate - Class in org.apache.taverna.server.localworker.impl: This class acts as a remote-aware delegate for the files in a workflow run's working directory and its subdirectories.
FileDelegate(File, DirectoryDelegate) - Constructor for class org.apache.taverna.server.localworker.impl.FileDelegate
FileMessageHandler - Class in org.apache.taverna.server.master.rest.handler: How to write out a File object with JAX-RS.
FileMessageHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.FileMessageHandler
fileName - Variable in class org.apache.taverna.server.port_description.ErrorValue
fileName - Variable in class org.apache.taverna.server.port_description.LeafValue
FilenameUtils - Class in org.apache.taverna.server.master.utils: Utility functions for getting entries from directories.
FilenameUtils() - Constructor for class org.apache.taverna.server.master.utils.FilenameUtils
FilenameVerifier - Class in org.apache.taverna.server.localworker.impl.utils: Utility class that handles filename validation on different target platforms.
FileReference - Class in org.apache.taverna.server.client.generic: Java class for FileReference complex type.
FileReference() - Constructor for class org.apache.taverna.server.client.generic.FileReference
FileReference() - Constructor for class org.apache.taverna.server.master.common.DirEntryReference.FileReference
FileSegment - Class in org.apache.taverna.server.master.rest: Representation of a segment of a file to be read by JAX-RS.
FileSegment(File, String) - Constructor for class org.apache.taverna.server.master.rest.FileSegment: Parse the HTTP Range header and determine what exact range of the file to read.
FileSegmentHandler - Class in org.apache.taverna.server.master.rest.handler: How to write out a segment of a file with JAX-RS.
FileSegmentHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.FileSegmentHandler
FilesystemAccessException - Exception in org.apache.taverna.server.master.exceptions: An exception that happened when the underlying filesystem was accessed.
FilesystemAccessException(String) - Constructor for exception org.apache.taverna.server.master.exceptions.FilesystemAccessException
FilesystemAccessException(String, Throwable) - Constructor for exception org.apache.taverna.server.master.exceptions.FilesystemAccessException
FilesystemAccessHandler - Class in org.apache.taverna.server.master.rest.handler
FilesystemAccessHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.FilesystemAccessHandler
FilesystemCreationOperation - Class in org.apache.taverna.server.client.rest: Java class for FilesystemCreationOperation complex type.
FilesystemCreationOperation() - Constructor for class org.apache.taverna.server.client.rest.FilesystemCreationOperation
fileType - Variable in class org.apache.taverna.server.client.generic.KeyPairCredential
fileType - Variable in class org.apache.taverna.server.client.generic.TrustDescriptor
fileType - Variable in class org.apache.taverna.server.master.common.Credential.KeyPair: The type of keystore file.
fileType - Variable in class org.apache.taverna.server.master.common.Trust: The type of certificate file.
fillInBaseData(String, String, URI) - Method in class org.apache.taverna.server.port_description.AbstractPortDescription
finalize() - Method in class org.apache.taverna.server.master.localworker.IdAwareForkRunFactory
finishTime - Variable in class org.apache.taverna.server.client.rest.RunDescription
finishTime() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName
FinishTime(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.FinishTime: Create new instance using existing Client instance, and a base URI and any parameters
finishTime - Variable in class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription: The location of the finish time property.
finishTimeOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Get an outline of the operations supported.
flushCache() - Method in class org.apache.taverna.server.master.utils.CertificateChainFetcher: Flushes the cache.
FlushThreadLocalCacheInterceptor - Class in org.apache.taverna.server.master.utils
FlushThreadLocalCacheInterceptor() - Constructor for class org.apache.taverna.server.master.utils.FlushThreadLocalCacheInterceptor
flushToDB() - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate: Cause the current state to be flushed to the database.
flushToDisk(RemoteRunDelegate) - Method in class org.apache.taverna.server.master.worker.RunDatabase
flushToDisk(RemoteRunDelegate) - Method in class org.apache.taverna.server.master.worker.RunDatabaseDAO: Ensure that the given workflow run is synchronized with the database.
flushToDisk(RemoteRunDelegate) - Method in interface org.apache.taverna.server.master.worker.RunDBSupport: Ensure that a run gets persisted in the database.
Forker - Class in org.apache.taverna.server.unixforker: A simple class that forks off processes when asked to over its standard input.
Forker(ProcessBuilder) - Constructor for class org.apache.taverna.server.unixforker.Forker
ForkRunFactory - Class in org.apache.taverna.server.master.localworker: A simple factory for workflow runs that forks runs from a subprocess.
ForkRunFactory() - Constructor for class org.apache.taverna.server.master.localworker.ForkRunFactory: Create a factory for remote runs that works by forking off a subprocess.
formula - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Charge
from - Variable in class org.apache.taverna.server.master.rest.FileSegment: The offset of the first byte of the segment to read.
fromDBform(RunDBSupport) - Method in class org.apache.taverna.server.master.worker.RunConnection: Get the remote run delegate for a particular persistent connection.
fromValue(String) - Static method in enum org.apache.taverna.server.client.generic.Permission

G

g - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.DSAKeyValueType
GeneralFailureException - Exception in org.apache.taverna.server.master.exceptions: Some sort of exception that occurred which we can't map any other way.
GeneralFailureException(Throwable) - Constructor for exception org.apache.taverna.server.master.exceptions.GeneralFailureException
GeneralFailureException(String, Throwable) - Constructor for exception org.apache.taverna.server.master.exceptions.GeneralFailureException
GeneralFailureHandler - Class in org.apache.taverna.server.master.rest.handler
GeneralFailureHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.GeneralFailureHandler
GENERATE_PROVENANCE - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerRunREST.PathNames
generateNewPassword() - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate
generateProvenance - Variable in class org.apache.taverna.server.client.rest.RunDescription
generateProvenance() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName
GenerateProvenance(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.GenerateProvenance: Create new instance using existing Client instance, and a base URI and any parameters
generateProvenance - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
generateProvenance - Variable in class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription: Whether to generate a bundle describing the run.
generateProvenanceOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Get an outline of the operations supported.
get() - Method in class org.apache.taverna.server.client.File
get(Charset) - Method in class org.apache.taverna.server.client.File
get(UriInfo) - Method in class org.apache.taverna.server.master.facade.Facade: Serve up some HTML as the root of the service.
get(String) - Method in class org.apache.taverna.server.master.FileConcatenation: Get the concatenated files.
get() - Method in interface org.apache.taverna.server.master.rest.TavernaServerInputREST
get(String) - Method in class org.apache.taverna.server.master.worker.RunDatabaseDAO: Obtain a workflow run handle.
getAbsent() - Method in class org.apache.taverna.server.client.port.OutputPort: Gets the value of the absent property.
getAddCandidateKeyStatement(CandidateKey, IdentifierFactory) - Method in class org.apache.taverna.server.master.utils.LoggingDerbyAdapter
getAddColumnStatement(Table, Column) - Method in class org.apache.taverna.server.master.utils.LoggingDerbyAdapter
getAddForeignKeyStatement(ForeignKey, IdentifierFactory) - Method in class org.apache.taverna.server.master.utils.LoggingDerbyAdapter
getAddPrimaryKeyStatement(PrimaryKey, IdentifierFactory) - Method in class org.apache.taverna.server.master.utils.LoggingDerbyAdapter
getAlgorithm() - Method in class org.apache.taverna.server.master.utils.CertificateChainFetcher
getAlgorithm() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.CanonicalizationMethodType: Gets the value of the algorithm property.
getAlgorithm() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.DigestMethodType: Gets the value of the algorithm property.
getAlgorithm() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureMethodType: Gets the value of the algorithm property.
getAlgorithm() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.TransformType: Gets the value of the algorithm property.
getAllowNew() - Method in interface org.apache.taverna.server.master.admin.Admin: Get whether to allow new workflow runs to be created.
getAllowNew() - Method in class org.apache.taverna.server.master.admin.AdminBean
getAllowNewWorkflowRuns() - Method in interface org.apache.taverna.server.master.api.ManagementModel
getAllowNewWorkflowRuns() - Method in class org.apache.taverna.server.master.TavernaServerSupport
getAllowStartWorkflowRuns() - Method in class org.apache.taverna.server.master.TavernaServerSupport
getAny() - Method in class org.apache.taverna.server.client.generic.Workflow: Gets the value of the any property.
getAs(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path3: Gives a description of the named entity in or beneath the working directory of the workflow run (either a Directory or File).
getAs(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path3: Gives a description of the named entity in or beneath the working directory of the workflow run (either a Directory or File).
getAsAtomXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Interaction: Get the feed document for this ATOM feed.
getAsAtomXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Interaction: Get the feed document for this ATOM feed.
getAsAtomXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Interaction.Id: Get the entry with a particular ID within this ATOM feed.
getAsAtomXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Interaction.Id: Get the entry with a particular ID within this ATOM feed.
getAsCapabilitiesXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.Capabilities: Gets a description of the capabilities supported by this installation of Taverna Server.
getAsCredentialListXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Credentials: Gives a list of credentials supplied to this workflow run.
getAsCredentialXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.CredentialsId: Describes a particular credential.
getAsDirectoryContentsXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd: Describes the working directory of the workflow run.
getAsEnabledNotificationFabricsXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.EnabledNotificationFabrics: Gets the list of supported, enabled notification fabrics.
getAsFile() - Method in class org.apache.taverna.server.client.File
getAsInputDescriptionXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.Expected: Describe the expected inputs of this workflow run.
getAsInputDescriptionXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.InputName: Gives a description of what is used to supply a particular input.
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root: Produces the description of the service.
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root: Produces the description of the service.
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.Capabilities: Gets a description of the capabilities supported by this installation of Taverna Server.
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.Capabilities: Gets a description of the capabilities supported by this installation of Taverna Server.
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.EnabledNotificationFabrics: Gets the list of supported, enabled notification fabrics.
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.EnabledNotificationFabrics: Gets the list of supported, enabled notification fabrics.
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy: Describe the parts of this policy.
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy: Describe the parts of this policy.
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.PermittedListenerTypes: Gets the list of permitted event listener types.
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.PermittedListenerTypes: Gets the list of permitted event listener types.
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.PermittedWorkflows: Gets the list of permitted workflows.
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.PermittedWorkflows: Gets the list of permitted workflows.
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Runs: Produces a list of all runs visible to the user.
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Runs: Produces a list of all runs visible to the user.
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName: Describes a workflow run.
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName: Describes a workflow run.
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.Expected: Describe the expected inputs of this workflow run.
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.Expected: Describe the expected inputs of this workflow run.
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input: Describe the sub-URIs of this resource.
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input: Describe the sub-URIs of this resource.
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.InputName: Gives a description of what is used to supply a particular input.
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.InputName: Gives a description of what is used to supply a particular input.
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners: Get the listeners installed in the workflow run.
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners: Get the listeners installed in the workflow run.
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name: Get the description of this listener.
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name: Get the description of this listener.
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name.Properties: Get the list of properties supported by a given event listener attached to a workflow run.
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name.Properties: Get the list of properties supported by a given event listener attached to a workflow run.
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Output: Gives a description of the outputs, as currently understood
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Output: Gives a description of the outputs, as currently understood
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Credentials: Gives a list of credentials supplied to this workflow run.
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Credentials: Gives a list of credentials supplied to this workflow run.
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.CredentialsId: Describes a particular credential.
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.CredentialsId: Describes a particular credential.
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security: Gives a description of the security information supported by the workflow run.
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security: Gives a description of the security information supported by the workflow run.
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Permissions: Gives a list of all non-default permissions associated with the enclosing workflow run.
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Permissions: Gives a list of all non-default permissions associated with the enclosing workflow run.
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Trusts: Gives a list of trusted identities supplied to this workflow run.
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Trusts: Gives a list of trusted identities supplied to this workflow run.
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.TrustsId: Describes a particular trusted identity.
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.TrustsId: Describes a particular trusted identity.
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd: Describes the working directory of the workflow run.
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd: Describes the working directory of the workflow run.
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path3: Gives a description of the named entity in or beneath the working directory of the workflow run (either a Directory or File).
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path3: Gives a description of the named entity in or beneath the working directory of the workflow run (either a Directory or File).
getAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Workflow: Gives the workflow document used to create the workflow run.
getAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Workflow: Gives the workflow document used to create the workflow run.
getAsListenerDescriptionXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name: Get the description of this listener.
getAsListenersXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners: Get the listeners installed in the workflow run.
getAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path3: Gives a description of the named entity in or beneath the working directory of the workflow run (either a Directory or File).
getAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path3: Gives a description of the named entity in or beneath the working directory of the workflow run (either a Directory or File).
getAsOutputDescriptionXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Output: Gives a description of the outputs, as currently understood
getAsPermissionsDescriptionXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Permissions: Gives a list of all non-default permissions associated with the enclosing workflow run.
getAsPermittedListenersXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.PermittedListenerTypes: Gets the list of permitted event listener types.
getAsPermittedWorkflowsXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.PermittedWorkflows: Gets the list of permitted workflows.
getAsPolicyDescriptionXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy: Describe the parts of this policy.
getAsPropertiesXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name.Properties: Get the list of properties supported by a given event listener attached to a workflow run.
getAsRunDescriptionXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName: Describes a workflow run.
getAsRunListXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Runs: Produces a list of all runs visible to the user.
getAsSecurityDescriptorXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security: Gives a description of the security information supported by the workflow run.
getAsServerDescriptionXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root: Produces the description of the service.
getAsStream() - Method in class org.apache.taverna.server.client.File
getAsTavernaRunInputsXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input: Describe the sub-URIs of this resource.
getAsTextPlain(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.OperatingLimit: Gets the maximum number of simultaneously operating runs that the user may have.
getAsTextPlain(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.OperatingLimit: Gets the maximum number of simultaneously operating runs that the user may have.
getAsTextPlain(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.RunLimit: Gets the maximum number of simultaneous runs in any state that the user may create.
getAsTextPlain(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.RunLimit: Gets the maximum number of simultaneous runs in any state that the user may create.
getAsTextPlain(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.CreateTime: Gives the time when the workflow run was first submitted to the server.
getAsTextPlain(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.CreateTime: Gives the time when the workflow run was first submitted to the server.
getAsTextPlain(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Expiry: Gives the time when the workflow run becomes eligible for automatic deletion.
getAsTextPlain(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Expiry: Gives the time when the workflow run becomes eligible for automatic deletion.
getAsTextPlain(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.FinishTime: Gives the time when the workflow run was first detected as finished, or an empty string if it has not yet finished (including if it has never started).
getAsTextPlain(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.FinishTime: Gives the time when the workflow run was first detected as finished, or an empty string if it has not yet finished (including if it has never started).
getAsTextPlain(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.GenerateProvenance: Whether to create the run bundle for the workflow run.
getAsTextPlain(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.GenerateProvenance: Whether to create the run bundle for the workflow run.
getAsTextPlain(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.Baclava: Gives the Baclava file describing the inputs, or empty if individual files are used.
getAsTextPlain(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.Baclava: Gives the Baclava file describing the inputs, or empty if individual files are used.
getAsTextPlain(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name.Configuration: Get the configuration for the given event listener that is attached to a workflow run.
getAsTextPlain(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name.Configuration: Get the configuration for the given event listener that is attached to a workflow run.
getAsTextPlain(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name.PropertiesPropertyName: Get the value of the particular property of an event listener attached to a workflow run.
getAsTextPlain(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name.PropertiesPropertyName: Get the value of the particular property of an event listener attached to a workflow run.
getAsTextPlain(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Log: Return the log for the workflow run.
getAsTextPlain(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Log: Return the log for the workflow run.
getAsTextPlain(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Name: Gives the descriptive name of the workflow run.
getAsTextPlain(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Name: Gives the descriptive name of the workflow run.
getAsTextPlain(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Output: Gives the Baclava file where output will be written; empty means use multiple simple files in the out directory.
getAsTextPlain(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Output: Gives the Baclava file where output will be written; empty means use multiple simple files in the out directory.
getAsTextPlain(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Owner: Gives the identity of who owns the workflow run.
getAsTextPlain(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Owner: Gives the identity of who owns the workflow run.
getAsTextPlain(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.PermissionsId: Describes the permission granted to a particular user.
getAsTextPlain(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.PermissionsId: Describes the permission granted to a particular user.
getAsTextPlain(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.StartTime: Gives the time when the workflow run was started, or an empty string if the run has not yet started.
getAsTextPlain(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.StartTime: Gives the time when the workflow run was started, or an empty string if the run has not yet started.
getAsTextPlain(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Status: Gives the current status of the workflow run.
getAsTextPlain(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Status: Gives the current status of the workflow run.
getAsTextPlain(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Stderr: Return the stderr for the workflow run.
getAsTextPlain(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Stderr: Return the stderr for the workflow run.
getAsTextPlain(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Stdout: Return the stdout for the workflow run.
getAsTextPlain(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Stdout: Return the stdout for the workflow run.
getAsTrustDescriptorXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.TrustsId: Describes a particular trusted identity.
getAsTrustListXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Trusts: Gives a list of trusted identities supplied to this workflow run.
getAsVndTavernaT2flowXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Workflow: Gives the workflow document used to create the workflow run.
getAsVndTavernaT2flowXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Workflow: Gives the workflow document used to create the workflow run.
getAsVndWf4everRobundleZip(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.RunBundle: Return the run bundle for the workflow run.
getAsVndWf4everRobundleZip(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.RunBundle: Return the run bundle for the workflow run.
getAsWorkflowVndTavernaT2flowXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Workflow: Gives the workflow document used to create the workflow run.
getAsWorkflowXml() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Workflow: Gives the workflow document used to create the workflow run.
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root: Produces the description of the service.
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root: Produces the description of the service.
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.Capabilities: Gets a description of the capabilities supported by this installation of Taverna Server.
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.Capabilities: Gets a description of the capabilities supported by this installation of Taverna Server.
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.EnabledNotificationFabrics: Gets the list of supported, enabled notification fabrics.
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.EnabledNotificationFabrics: Gets the list of supported, enabled notification fabrics.
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy: Describe the parts of this policy.
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy: Describe the parts of this policy.
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.PermittedListenerTypes: Gets the list of permitted event listener types.
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.PermittedListenerTypes: Gets the list of permitted event listener types.
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.PermittedWorkflows: Gets the list of permitted workflows.
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.PermittedWorkflows: Gets the list of permitted workflows.
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Runs: Produces a list of all runs visible to the user.
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Runs: Produces a list of all runs visible to the user.
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName: Describes a workflow run.
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName: Describes a workflow run.
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.Expected: Describe the expected inputs of this workflow run.
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.Expected: Describe the expected inputs of this workflow run.
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input: Describe the sub-URIs of this resource.
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input: Describe the sub-URIs of this resource.
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.InputName: Gives a description of what is used to supply a particular input.
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.InputName: Gives a description of what is used to supply a particular input.
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners: Get the listeners installed in the workflow run.
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners: Get the listeners installed in the workflow run.
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name: Get the description of this listener.
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name: Get the description of this listener.
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name.Properties: Get the list of properties supported by a given event listener attached to a workflow run.
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name.Properties: Get the list of properties supported by a given event listener attached to a workflow run.
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Output: Gives a description of the outputs, as currently understood
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Output: Gives a description of the outputs, as currently understood
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Credentials: Gives a list of credentials supplied to this workflow run.
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Credentials: Gives a list of credentials supplied to this workflow run.
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.CredentialsId: Describes a particular credential.
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.CredentialsId: Describes a particular credential.
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security: Gives a description of the security information supported by the workflow run.
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security: Gives a description of the security information supported by the workflow run.
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Permissions: Gives a list of all non-default permissions associated with the enclosing workflow run.
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Permissions: Gives a list of all non-default permissions associated with the enclosing workflow run.
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Trusts: Gives a list of trusted identities supplied to this workflow run.
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Trusts: Gives a list of trusted identities supplied to this workflow run.
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.TrustsId: Describes a particular trusted identity.
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.TrustsId: Describes a particular trusted identity.
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Usage: Return the usage record for the workflow run.
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Usage: Return the usage record for the workflow run.
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd: Describes the working directory of the workflow run.
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd: Describes the working directory of the workflow run.
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path3: Gives a description of the named entity in or beneath the working directory of the workflow run (either a Directory or File).
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path3: Gives a description of the named entity in or beneath the working directory of the workflow run (either a Directory or File).
getAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Workflow: Gives the workflow document used to create the workflow run.
getAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Workflow: Gives the workflow document used to create the workflow run.
getAsZip(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path3: Gives a description of the named entity in or beneath the working directory of the workflow run (either a Directory or File).
getAsZip(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path3: Gives a description of the named entity in or beneath the working directory of the workflow run (either a Directory or File).
getAuthorities() - Method in class org.apache.taverna.server.master.identity.User
getBaclava() - Method in class org.apache.taverna.server.client.rest.TavernaRunInputs: Gets the value of the baclava property.
getBaclavaFile() - Method in interface org.apache.taverna.server.master.rest.TavernaServerInputREST
getBaseUriBuilder() - Method in interface org.apache.taverna.server.master.interfaces.UriBuilderFactory
getBaseUriBuilder() - Method in class org.apache.taverna.server.master.notification.atom.AtomFeed
getBaseUriBuilder() - Method in class org.apache.taverna.server.master.TavernaServer
getBenchmark() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ExecutionHostType: Gets the value of the benchmark property.
getById(Object) - Method in class org.apache.taverna.server.master.utils.JDOSupport: Look up an instance of the context class by its identity.
getCanonicalizationMethod() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignedInfoType: Gets the value of the canonicalizationMethod property.
getCapabilities() - Method in class org.apache.taverna.server.client.rest.PolicyDescription: Gets the value of the capabilities property.
getCapabilities() - Method in class org.apache.taverna.server.client.TavernaServer
getCapabilities() - Method in interface org.apache.taverna.server.master.rest.TavernaServerREST.PolicyView
getCapabilities() - Method in class org.apache.taverna.server.master.TavernaServerSupport
getCapabilities() - Method in class org.apache.taverna.server.master.utils.CapabilityLister
getCapability() - Method in class org.apache.taverna.server.client.generic.Capability: Gets the value of the capability property.
getCapability() - Method in class org.apache.taverna.server.client.rest.Capabilities: Gets the value of the capability property.
getCertificateBytes() - Method in class org.apache.taverna.server.client.generic.TrustDescriptor: Gets the value of the certificateBytes property.
getCertificateFile() - Method in class org.apache.taverna.server.client.generic.TrustDescriptor: Gets the value of the certificateFile property.
getCharge() - Method in class org.apache.taverna.server.usagerecord.xml.urf.UsageRecordType: Gets the value of the charge property.
getCharge() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType: Gets the value of the charge property.
getCharge() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType: Gets the value of the charge property.
getCharge() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkUsageBlockType: Gets the value of the charge property.
getCharge() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Gets the value of the charge property.
getCloudUsageBlock() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecordType: Gets the value of the cloudUsageBlock property.
getComputeUsageBlock() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecordType: Gets the value of the computeUsageBlock property.
getConfiguration() - Method in class org.apache.taverna.server.client.rest.ListenerDescription: Gets the value of the configuration property.
getConfiguration() - Method in class org.apache.taverna.server.localworker.impl.WorkerCore
getConfiguration() - Method in interface org.apache.taverna.server.localworker.remote.RemoteListener
getConfiguration() - Method in interface org.apache.taverna.server.master.interfaces.Listener
getConfiguration() - Method in interface org.apache.taverna.server.master.rest.TavernaServerListenersREST.TavernaServerListenerREST: Get the configuration for the given event listener that is attached to a workflow run.
getConnection() - Method in class org.apache.taverna.server.master.utils.WebappAwareDataSource
getConsumptionRate() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Processors: Gets the value of the consumptionRate property.
getContainingDirectory() - Method in class org.apache.taverna.server.localworker.impl.DirectoryDelegate
getContainingDirectory() - Method in class org.apache.taverna.server.localworker.impl.FileDelegate
getContainingDirectory() - Method in interface org.apache.taverna.server.localworker.remote.RemoteDirectoryEntry: Gets the directory containing this directory entry.
getContent(String) - Method in interface org.apache.taverna.server.master.notification.NotificationEngine.Message
getContent() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.CanonicalizationMethodType: Gets the value of the content property.
getContent() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.DigestMethodType: Gets the value of the content property.
getContent() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.KeyInfoType: Gets the value of the content property.
getContent() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.KeyValueType: Gets the value of the content property.
getContent() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectType: Gets the value of the content property.
getContent() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.PGPDataType: Gets the rest of the content model.
getContent() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureMethodType: Gets the value of the content property.
getContent() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignaturePropertyType: Gets the value of the content property.
getContent() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.TransformType: Gets the value of the content property.
getContentByteLength() - Method in class org.apache.taverna.server.client.port.LeafValue: Gets the value of the contentByteLength property.
getContentFile() - Method in class org.apache.taverna.server.client.port.LeafValue: Gets the value of the contentFile property.
getContents() - Method in class org.apache.taverna.server.localworker.impl.DirectoryDelegate
getContents(int, int) - Method in class org.apache.taverna.server.localworker.impl.FileDelegate
getContents() - Method in interface org.apache.taverna.server.localworker.remote.RemoteDirectory
getContents(int, int) - Method in interface org.apache.taverna.server.localworker.remote.RemoteFile: Read from the file.
getContents() - Method in interface org.apache.taverna.server.master.interfaces.Directory
getContents(int, int) - Method in interface org.apache.taverna.server.master.interfaces.File
getContentsAsZip() - Method in interface org.apache.taverna.server.master.interfaces.Directory
getContentsByDate() - Method in interface org.apache.taverna.server.master.interfaces.Directory
getContentType() - Method in class org.apache.taverna.server.client.port.LeafValue: Gets the value of the contentType property.
getContentType() - Method in enum org.apache.taverna.server.master.common.Workflow.ContentType
getContentTypeMap() - Method in class org.apache.taverna.server.master.TavernaServerSupport
getCount() - Method in class org.apache.taverna.server.master.utils.InvocationCounter
getCpuDuration() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType: Gets the value of the cpuDuration property.
getCreate() - Method in class org.apache.taverna.server.client.Run
getCreateDate() - Method in class org.apache.taverna.server.master.usage.UsageRecord
getCreateIndexStatement(Index, IdentifierFactory) - Method in class org.apache.taverna.server.master.utils.LoggingDerbyAdapter
getCreateTableStatement(TableImpl, Column[], Properties, IdentifierFactory) - Method in class org.apache.taverna.server.master.utils.LoggingDerbyAdapter
getCreateTime() - Method in class org.apache.taverna.server.client.rest.RunDescription: Gets the value of the createTime property.
getCreateTime() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Returns the time when the workflow run was created.
getCreateTime() - Method in class org.apache.taverna.server.usagerecord.xml.urf.RecordIdentity: Gets the value of the createTime property.
getCreateTime() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.RecordIdentityBlockType: Gets the value of the createTime property.
getCreationTimestamp() - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun
getCreationTimestamp() - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
getCreationWorkflow() - Method in class org.apache.taverna.server.client.rest.RunDescription: Gets the value of the creationWorkflow property.
getCredential() - Method in class org.apache.taverna.server.client.rest.CredentialCollection: Gets the value of the credential property.
getCredential() - Method in class org.apache.taverna.server.client.rest.CredentialList: Gets the value of the credential property.
getCredentialBytes() - Method in class org.apache.taverna.server.client.generic.KeyPairCredential: Gets the value of the credentialBytes property.
getCredentialFile() - Method in class org.apache.taverna.server.client.generic.KeyPairCredential: Gets the value of the credentialFile property.
getCredentialName() - Method in class org.apache.taverna.server.client.generic.KeyPairCredential: Gets the value of the credentialName property.
getCredentials() - Method in class org.apache.taverna.server.client.rest.SecurityDescriptor: Gets the value of the credentials property.
getCredentials() - Method in interface org.apache.taverna.server.master.interfaces.TavernaSecurityContext
getCredentials() - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate
getCurrentRunCount() - Method in class org.apache.taverna.server.master.TavernaServerSupport
getCurrentRunNames() - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: What are the current runs?
getCurrentRunNames() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
getDefaultLifetime() - Method in interface org.apache.taverna.server.master.admin.Admin: Get the default lifetime of workflow runs.
getDefaultLifetime() - Method in class org.apache.taverna.server.master.admin.AdminBean
getDefaultLifetime() - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: How long will things live? Getter
getDefaultLifetime() - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
getDefaultLifetime() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
getDefaultLifetime() - Method in interface org.apache.taverna.server.master.worker.WorkerModel
getDefaultListener() - Method in interface org.apache.taverna.server.localworker.api.Worker
getDefaultListener() - Method in class org.apache.taverna.server.localworker.impl.WorkerCore
getDeleteTableStatement(SQLTable) - Method in class org.apache.taverna.server.master.utils.LoggingDerbyAdapter
getDelimiter() - Method in interface org.apache.taverna.server.localworker.remote.RemoteInput
getDelimiter() - Method in interface org.apache.taverna.server.master.interfaces.Input
getDepth() - Method in class org.apache.taverna.server.client.port.ErrorValue: Gets the value of the depth property.
getDepth() - Method in class org.apache.taverna.server.client.port.Port: Gets the value of the depth property.
getDescription(UriInfo) - Method in interface org.apache.taverna.server.master.admin.Admin: Get a description of the administration interface.
getDescription(UriInfo) - Method in class org.apache.taverna.server.master.admin.AdminBean
getDescription(UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerDirectoryREST: Get the working directory of the workflow run.
getDescription(UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerListenersREST: Get the listeners installed in the workflow run.
getDescription(UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerListenersREST.TavernaServerListenerREST: Get the description of this listener.
getDescription(UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerREST.PolicyView: Describe the URIs in this view of the server's policies.
getDescription(UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Describes a workflow run.
getDescription() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Charge: Gets the value of the description property.
getDescription() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ConsumableResourceType: Gets the value of the description property.
getDescription() - Method in class org.apache.taverna.server.usagerecord.xml.urf.CpuDuration: Gets the value of the description property.
getDescription() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Disk: Gets the value of the description property.
getDescription() - Method in class org.apache.taverna.server.usagerecord.xml.urf.EndTime: Gets the value of the description property.
getDescription() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Host: Gets the value of the description property.
getDescription() - Method in class org.apache.taverna.server.usagerecord.xml.urf.JobName: Gets the value of the description property.
getDescription() - Method in class org.apache.taverna.server.usagerecord.xml.urf.MachineName: Gets the value of the description property.
getDescription() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Memory: Gets the value of the description property.
getDescription() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Network: Gets the value of the description property.
getDescription() - Method in class org.apache.taverna.server.usagerecord.xml.urf.NodeCount: Gets the value of the description property.
getDescription() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Processors: Gets the value of the description property.
getDescription() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ProjectName: Gets the value of the description property.
getDescription() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Queue: Gets the value of the description property.
getDescription() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ResourceType: Gets the value of the description property.
getDescription() - Method in class org.apache.taverna.server.usagerecord.xml.urf.StartTime: Gets the value of the description property.
getDescription() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Status: Gets the value of the description property.
getDescription() - Method in class org.apache.taverna.server.usagerecord.xml.urf.SubmitHost: Gets the value of the description property.
getDescription() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Swap: Gets the value of the description property.
getDescription() - Method in class org.apache.taverna.server.usagerecord.xml.urf.WallDuration: Gets the value of the description property.
getDescription() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.InfrastructureType: Gets the value of the description property.
getDescription() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.QueueType: Gets the value of the description property.
getDescription() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.SubmitTypeType: Gets the value of the description property.
getDescriptorRef() - Method in class org.apache.taverna.server.client.rest.InputDescription: Gets the value of the descriptorRef property.
getDestinationAddress() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkOutboundUsedType: Gets the value of the destinationAddress property.
getDestroyers() - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
getDigestMethod() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ReferenceType: Gets the value of the digestMethod property.
getDigestValue() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ReferenceType: Gets the value of the digestValue property.
getDirectory(TavernaRun, DirEntryReference) - Method in class org.apache.taverna.server.master.utils.FilenameUtils: Get a named directory from a workflow run.
getDirectory(TavernaRun, String) - Method in class org.apache.taverna.server.master.utils.FilenameUtils: Get a named directory from a workflow run.
getDirectoryOrFileContents(List<PathSegment>, UriInfo, HttpHeaders) - Method in interface org.apache.taverna.server.master.rest.TavernaServerDirectoryREST: Gets a description of the named entity in or beneath the working directory of the workflow run, which may be either a Directory or a File.
getDirectoryPath() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Gets the value of the directoryPath property.
getDirEntry(TavernaRun, String) - Method in class org.apache.taverna.server.master.utils.FilenameUtils: Get a named directory entry from a workflow run.
getDirEntry(TavernaRun, List<PathSegment>) - Method in class org.apache.taverna.server.master.utils.FilenameUtils: Get a named directory entry from a workflow run.
getDirEntry(TavernaRun, DirEntryReference) - Method in class org.apache.taverna.server.master.utils.FilenameUtils: Get a named directory entry from a workflow run.
getDirOrFile() - Method in class org.apache.taverna.server.client.rest.DirectoryContents: Gets the value of the dirOrFile property.
getDiskOrMemoryOrSwap() - Method in class org.apache.taverna.server.usagerecord.xml.urf.UsageRecordType: Gets the value of the diskOrMemoryOrSwap property.
getDropTableStatement(Table) - Method in class org.apache.taverna.server.master.utils.LoggingDerbyAdapter
getDropViewStatement(ViewImpl) - Method in class org.apache.taverna.server.master.utils.LoggingDerbyAdapter
getEnabledNotificationFabrics() - Method in class org.apache.taverna.server.client.rest.PolicyDescription: Gets the value of the enabledNotificationFabrics property.
getEnabledNotifiers() - Method in interface org.apache.taverna.server.master.rest.TavernaServerREST.PolicyView: Gets the list of supported, enabled notification fabrics.
getEncoding() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectType: Gets the value of the encoding property.
getEndTime() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType: Gets the value of the endTime property.
getEndTime() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType: Gets the value of the endTime property.
getEndTime() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Gets the value of the endTime property.
getEntry(String) - Method in class org.apache.taverna.server.master.InteractionFeed
getEntry(Abdera, String) - Method in class org.apache.taverna.server.master.notification.atom.Event
getEntry(String) - Method in interface org.apache.taverna.server.master.rest.InteractionFeedREST: Gets the content of an entry in this ATOM feed.
getEntryURI(TavernaRun, String) - Method in class org.apache.taverna.server.master.interaction.InteractionFeedSupport
getError() - Method in class org.apache.taverna.server.client.port.OutputPort: Gets the value of the error property.
getErrorByteLength() - Method in class org.apache.taverna.server.client.port.ErrorValue: Gets the value of the errorByteLength property.
getErrorFile() - Method in class org.apache.taverna.server.client.port.ErrorValue: Gets the value of the errorFile property.
getEstimatedContentType(File) - Method in class org.apache.taverna.server.master.TavernaServerSupport: Given a file, produce a guess at its content type.
getEvent(String) - Method in class org.apache.taverna.server.master.notification.atom.AtomFeed
getEvent(UsernamePrincipal, String) - Method in class org.apache.taverna.server.master.notification.atom.EventDAO: Get a particular event.
getEvent(String) - Method in interface org.apache.taverna.server.master.rest.TavernaServerREST.EventFeed
getEvents(UsernamePrincipal) - Method in class org.apache.taverna.server.master.notification.atom.EventDAO: Get the given user's list of events.
getExecuteWorkflowScript() - Method in interface org.apache.taverna.server.master.admin.Admin: Get the full pathname of the executeWorkflow.sh file.
getExecuteWorkflowScript() - Method in class org.apache.taverna.server.master.admin.AdminBean
getExecuteWorkflowScript() - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: How do we start the workflow engine? Getter
getExecuteWorkflowScript() - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
getExecuteWorkflowScript() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
getExecuteWorkflowScript() - Method in interface org.apache.taverna.server.master.worker.WorkerModel
getExecutionHost() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType: Gets the value of the executionHost property.
getExecutionHost() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType: Gets the value of the executionHost property.
getExistingRuns() - Method in class org.apache.taverna.server.client.TavernaServer
getExitCode() - Method in class org.apache.taverna.server.client.Run
getExitStatus() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType: Gets the value of the exitStatus property.
getExpected() - Method in class org.apache.taverna.server.client.rest.TavernaRunInputs: Gets the value of the expected property.
getExpected() - Method in interface org.apache.taverna.server.master.rest.TavernaServerInputREST
getExpiry() - Method in class org.apache.taverna.server.client.rest.RunDescription: Gets the value of the expiry property.
getExpiry() - Method in class org.apache.taverna.server.client.Run
getExpiry() - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun
getExpiry() - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
getExpiryTime() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Returns the time when the workflow run becomes eligible for automatic deletion.
getExponent() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.RSAKeyValueType: Gets the value of the exponent property.
getExtraArgs() - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
getExtraArgs() - Method in interface org.apache.taverna.server.master.worker.WorkerModel
getExtraArguments() - Method in interface org.apache.taverna.server.master.admin.Admin: Get the extra arguments to be supplied to Java subprocesses.
getExtraArguments() - Method in class org.apache.taverna.server.master.admin.AdminBean
getExtraArguments() - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: How do we start the file system access process? Extra arguments to pass.
getExtraArguments() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
getFactory() - Method in interface org.apache.taverna.server.master.interfaces.TavernaSecurityContext
getFactory() - Method in class org.apache.taverna.server.master.worker.RunDatabase
getFactory() - Method in interface org.apache.taverna.server.master.worker.RunDBSupport
getFactory() - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate
getFactoryProcessMapping() - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: What factory process to use for a particular user?
getFactoryProcessMapping() - Method in class org.apache.taverna.server.master.localworker.ForkRunFactory
getFactoryProcessMapping() - Method in class org.apache.taverna.server.master.localworker.IdAwareForkRunFactory
getFactoryProcessMapping() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
getFactoryProcessName() - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: What is the RMI ID of the factory process?
getFactoryProcessName() - Method in class org.apache.taverna.server.master.localworker.ForkRunFactory
getFactoryProcessName() - Method in class org.apache.taverna.server.master.localworker.IdAwareForkRunFactory
getFactoryProcessName() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
getFactoryProcessNamePrefix() - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
getFactoryProcessNamePrefix() - Method in interface org.apache.taverna.server.master.worker.WorkerModel
getFeed() - Method in class org.apache.taverna.server.client.rest.ServerDescription: Gets the value of the feed property.
getFeed() - Method in class org.apache.taverna.server.master.InteractionFeed
getFeed(UriInfo) - Method in class org.apache.taverna.server.master.notification.atom.AtomFeed
getFeed() - Method in interface org.apache.taverna.server.master.rest.InteractionFeedREST: Get the feed document for this ATOM feed.
getFeed(UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerREST.EventFeed
getFeedLanguage() - Method in class org.apache.taverna.server.master.notification.atom.AtomFeed
getFeedURI(TavernaRun) - Method in class org.apache.taverna.server.master.interaction.InteractionFeedSupport
getFile() - Method in class org.apache.taverna.server.client.rest.InputDescription: Gets the value of the file property.
getFile() - Method in interface org.apache.taverna.server.localworker.remote.RemoteInput
getFile() - Method in interface org.apache.taverna.server.master.interfaces.Input
getFile(TavernaRun, DirEntryReference) - Method in class org.apache.taverna.server.master.utils.FilenameUtils: Get a named file from a workflow run.
getFile(TavernaRun, String) - Method in class org.apache.taverna.server.master.utils.FilenameUtils: Get a named file from a workflow run.
getFileCount() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Gets the value of the fileCount property.
getFileType() - Method in class org.apache.taverna.server.client.generic.KeyPairCredential: Gets the value of the fileType property.
getFileType() - Method in class org.apache.taverna.server.client.generic.TrustDescriptor: Gets the value of the fileType property.
getFinish() - Method in class org.apache.taverna.server.client.Run
getFinishTime() - Method in class org.apache.taverna.server.client.rest.RunDescription: Gets the value of the finishTime property.
getFinishTime() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Returns the time when the workflow run was detected to have finished.
getFinishTimestamp() - Method in class org.apache.taverna.server.localworker.impl.LocalWorker
getFinishTimestamp() - Method in interface org.apache.taverna.server.localworker.remote.RemoteSingleRun
getFinishTimestamp() - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun
getFinishTimestamp() - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
getFormula() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Charge: Gets the value of the formula property.
getFullName() - Method in interface org.apache.taverna.server.master.interfaces.DirectoryEntry
getG() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.DSAKeyValueType: Gets the value of the g property.
getGenerateProvenance() - Method in class org.apache.taverna.server.client.rest.RunDescription: Gets the value of the generateProvenance property.
getGenerateProvenance() - Method in interface org.apache.taverna.server.master.admin.Admin: Do we turn on the generate provenance option by default?
getGenerateProvenance() - Method in class org.apache.taverna.server.master.admin.AdminBean
getGenerateProvenance() - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory
getGenerateProvenance() - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun
getGenerateProvenance() - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
getGenerateProvenance() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST
getGenerateProvenance() - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
getGenerateProvenance() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
getGenerateProvenance() - Method in interface org.apache.taverna.server.master.worker.WorkerModel
getGlobalGroupAttribute() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.SubjectIdentityBlockType: Gets the value of the globalGroupAttribute property.
getGlobalGroupId() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.SubjectIdentityBlockType: Gets the value of the globalGroupId property.
getGlobalJobId() - Method in class org.apache.taverna.server.usagerecord.xml.urf.JobIdentity: Gets the value of the globalJobId property.
getGlobalJobId() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType: Gets the value of the globalJobId property.
getGlobalUserId() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.SubjectIdentityBlockType: Gets the value of the globalUserId property.
getGlobalUserName() - Method in class org.apache.taverna.server.usagerecord.xml.urf.UserIdentity: Gets the value of the globalUserName property.
getGlobalVirtualMachineId() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType: Gets the value of the globalVirtualMachineId property.
getHost() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Gets the value of the host property.
getHostname() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ExecutionHostType: Gets the value of the hostname property.
getHostType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType: Gets the value of the hostType property.
getHostType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType: Gets the value of the hostType property.
getHostType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Gets the value of the hostType property.
getHref() - Method in class org.apache.taverna.server.client.generic.CredentialDescriptor: Gets the value of the href property.
getHref() - Method in class org.apache.taverna.server.client.generic.DirectoryEntry: Gets the value of the href property.
getHref() - Method in class org.apache.taverna.server.client.generic.Location: Gets the value of the href property.
getHref() - Method in class org.apache.taverna.server.client.generic.TavernaRun: Gets the value of the href property.
getHref() - Method in class org.apache.taverna.server.client.generic.TrustDescriptor: Gets the value of the href property.
getHref() - Method in class org.apache.taverna.server.client.port.InputPort: Gets the value of the href property.
getHref() - Method in class org.apache.taverna.server.client.port.Value: Gets the value of the href property.
getHref() - Method in class org.apache.taverna.server.client.rest.CredentialCollection: Gets the value of the href property.
getHref() - Method in class org.apache.taverna.server.client.rest.ListenerDescription: Gets the value of the href property.
getHref() - Method in class org.apache.taverna.server.client.rest.RunDescription.Expiry: Gets the value of the href property.
getHref() - Method in class org.apache.taverna.server.client.rest.TrustCollection: Gets the value of the href property.
getId() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Interaction.Id: Get id
getId() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.CredentialsId: Get id
getId() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.PermissionsId: Get id
getId() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.TrustsId: Get id
getId() - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun
getId() - Method in class org.apache.taverna.server.master.notification.atom.Event
getId() - Method in class org.apache.taverna.server.master.usage.UsageRecord
getId() - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
getId() - Method in class org.apache.taverna.server.master.worker.RunConnection
getId() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.KeyInfoType: Gets the value of the id property.
getId() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ManifestType: Gets the value of the id property.
getId() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectType: Gets the value of the id property.
getId() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ReferenceType: Gets the value of the id property.
getId() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignaturePropertiesType: Gets the value of the id property.
getId() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignaturePropertyType: Gets the value of the id property.
getId() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureType: Gets the value of the id property.
getId() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureValueType: Gets the value of the id property.
getId() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignedInfoType: Gets the value of the id property.
getImageId() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType: Gets the value of the imageId property.
getInfrastructure() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.RecordIdentityBlockType: Gets the value of the infrastructure property.
getInput() - Method in class org.apache.taverna.server.client.port.InputDescription: Gets the value of the input property.
getInput() - Method in class org.apache.taverna.server.client.rest.TavernaRunInputs: Gets the value of the input property.
getInput(String, UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerInputREST: Get what input is set for the specific input.
getInput(TavernaRun, String) - Method in class org.apache.taverna.server.master.TavernaServerSupport: Get a particular input to a workflow run.
getInputBaclavaFile() - Method in class org.apache.taverna.server.localworker.impl.LocalWorker
getInputBaclavaFile() - Method in interface org.apache.taverna.server.localworker.remote.RemoteSingleRun
getInputBaclavaFile() - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun
getInputBaclavaFile() - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
getInputs() - Method in class org.apache.taverna.server.client.rest.RunDescription: Gets the value of the inputs property.
getInputs() - Method in class org.apache.taverna.server.client.Run
getInputs() - Method in class org.apache.taverna.server.localworker.impl.LocalWorker
getInputs() - Method in interface org.apache.taverna.server.localworker.remote.RemoteSingleRun
getInputs() - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun
getInputs(UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Get a delegate for working with the inputs to this workflow run.
getInputs() - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
getInteraction() - Method in class org.apache.taverna.server.client.rest.RunDescription: Gets the value of the interaction property.
getInteractionEntry(String) - Method in class org.apache.taverna.server.client.Run
getInteractionFeed() - Method in class org.apache.taverna.server.client.rest.ServerDescription: Gets the value of the interactionFeed property.
getInteractionFeed() - Method in class org.apache.taverna.server.client.Run
getInteractionFeed() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Get a handle to the interaction feed.
getInvocationCount() - Method in class org.apache.taverna.server.master.TavernaServerSupport
getJ() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.DSAKeyValueType: Gets the value of the j property.
getJavaBinary() - Method in interface org.apache.taverna.server.master.admin.Admin: Get the Java binary to be used for execution of subprocesses.
getJavaBinary() - Method in class org.apache.taverna.server.master.admin.AdminBean
getJavaBinary() - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: Where is Java? Getter
getJavaBinary() - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
getJavaBinary() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
getJavaBinary() - Method in interface org.apache.taverna.server.master.worker.WorkerModel
getJobIdentity() - Method in class org.apache.taverna.server.usagerecord.xml.urf.UsageRecordType: Gets the value of the jobIdentity property.
getJobName() - Method in class org.apache.taverna.server.usagerecord.xml.urf.UsageRecordType: Gets the value of the jobName property.
getJobName() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType: Gets the value of the jobName property.
getJobUsageBlock() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecordType: Gets the value of the jobUsageBlock property.
getKeyInfo() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureType: Gets the value of the keyInfo property.
getKeyInfo() - Method in class org.apache.taverna.server.usagerecord.xml.urf.RecordIdentity: Gets the value of the keyInfo property.
getKeyInfo() - Method in class org.apache.taverna.server.usagerecord.xml.urf.UserIdentity: Gets the value of the keyInfo property.
getKeypair() - Method in class org.apache.taverna.server.client.rest.Credential: Gets the value of the keypair property.
getKeypair() - Method in class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.CredentialHolder: Convenience accessor function.
getKeystoreType() - Method in class org.apache.taverna.server.master.utils.CertificateChainFetcher
getLastExitCode() - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: What was the last observed exit code?
getLastExitCode() - Method in class org.apache.taverna.server.master.localworker.ForkRunFactory
getLastExitCode() - Method in class org.apache.taverna.server.master.localworker.IdAwareForkRunFactory
getLastExitCode() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
getLastStartupCheckCount() - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: How long did the last subprocess startup take?
getLastStartupCheckCount() - Method in class org.apache.taverna.server.master.localworker.ForkRunFactory
getLastStartupCheckCount() - Method in class org.apache.taverna.server.master.localworker.IdAwareForkRunFactory
getLastStartupCheckCount() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
getLength() - Method in class org.apache.taverna.server.client.port.ListValue: Gets the value of the length property.
getLink() - Method in class org.apache.taverna.server.master.notification.atom.Event
getList() - Method in class org.apache.taverna.server.client.port.OutputPort: Gets the value of the list property.
getListDelimiter() - Method in class org.apache.taverna.server.client.rest.InputDescription: Gets the value of the listDelimiter property.
getListener() - Method in class org.apache.taverna.server.client.rest.Listeners: Gets the value of the listener property.
getListener() - Method in class org.apache.taverna.server.client.rest.RunDescription.Listeners: Gets the value of the listener property.
getListener(String) - Method in interface org.apache.taverna.server.master.rest.TavernaServerListenersREST: Resolve a particular listener from its name.
getListener(TavernaRun, String) - Method in class org.apache.taverna.server.master.TavernaServerSupport: Obtain a listener that is already attached to a workflow run.
getListener(String, String) - Method in class org.apache.taverna.server.master.TavernaServerSupport: Get a listener attached to a run.
getListeners() - Method in class org.apache.taverna.server.client.rest.RunDescription: Gets the value of the listeners property.
getListeners() - Method in class org.apache.taverna.server.localworker.impl.LocalWorker
getListeners() - Method in interface org.apache.taverna.server.localworker.remote.RemoteSingleRun
getListeners() - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun
getListeners() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Get the event listeners attached to this workflow run.
getListeners() - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
getListenerTypes() - Method in class org.apache.taverna.server.localworker.impl.LocalWorker
getListenerTypes() - Method in interface org.apache.taverna.server.localworker.remote.RemoteSingleRun: Get the types of listener supported by this run.
getListenerTypes() - Method in class org.apache.taverna.server.master.TavernaServerSupport
getListenerTypes() - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate: Get the types of listener supported by this run.
getLocalFeedBase(URI) - Method in class org.apache.taverna.server.master.interaction.InteractionFeedSupport
getLocalGroupId() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.SubjectIdentityBlockType: Gets the value of the localGroupId property.
getLocalJobId() - Method in class org.apache.taverna.server.usagerecord.xml.urf.JobIdentity: Gets the value of the localJobId property.
getLocalJobId() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType: Gets the value of the localJobId property.
getLocalUserId() - Method in class org.apache.taverna.server.usagerecord.xml.urf.UserIdentity: Gets the value of the localUserId property.
getLocalUserId() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.SubjectIdentityBlockType: Gets the value of the localUserId property.
getLocalUsername() - Method in class org.apache.taverna.server.master.identity.User
getLocalVirtualMachineId() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType: Gets the value of the localVirtualMachineId property.
getLog() - Method in class org.apache.taverna.server.client.rest.RunDescription: Gets the value of the log property.
getLog() - Method in class org.apache.taverna.server.client.Run
getLogContents() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST
getLogFaults() - Method in interface org.apache.taverna.server.master.admin.Admin: Get whether to log the user-directed faults.
getLogFaults() - Method in class org.apache.taverna.server.master.admin.AdminBean
getLogIncomingWorkflows() - Method in interface org.apache.taverna.server.master.api.ManagementModel
getLogIncomingWorkflows() - Method in class org.apache.taverna.server.master.TavernaServerSupport
getLoginTimeout() - Method in class org.apache.taverna.server.master.utils.WebappAwareDataSource
getLogOutgoingExceptions() - Method in interface org.apache.taverna.server.master.api.ManagementModel
getLogOutgoingExceptions() - Method in class org.apache.taverna.server.master.TavernaServerSupport
getLogs(TavernaRun) - Method in class org.apache.taverna.server.master.TavernaServerSupport
getLogWorkflows() - Method in interface org.apache.taverna.server.master.admin.Admin: Get whether to log the workflows submitted.
getLogWorkflows() - Method in class org.apache.taverna.server.master.admin.AdminBean
getLogWriter() - Method in class org.apache.taverna.server.master.utils.WebappAwareDataSource
getMachineName() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType: Gets the value of the machineName property.
getMachineName() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType: Gets the value of the machineName property.
getMainProfileName() - Method in class org.apache.taverna.server.master.common.Workflow
getMainProfileName() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Produces the name of the workflow's main profile.
getMasterEventFeed() - Method in class org.apache.taverna.server.master.localworker.AbstractRemoteRunFactory
getMasterEventFeed() - Method in interface org.apache.taverna.server.master.worker.FactoryBean
getMaxOperatingRuns() - Method in interface org.apache.taverna.server.master.rest.TavernaServerREST.PolicyView: Gets the maximum number of simultaneous operating runs that the user may create.
getMaxRuns() - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: How much can be done at once? Getter
getMaxRuns() - Method in interface org.apache.taverna.server.master.interfaces.Policy
getMaxRuns(UsernamePrincipal) - Method in interface org.apache.taverna.server.master.interfaces.Policy: Get the limit on the number of runs for this user.
getMaxRuns() - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
getMaxRuns() - Method in interface org.apache.taverna.server.master.worker.PolicyLimits
getMaxRuns() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
getMaxSimultaneousRuns() - Method in interface org.apache.taverna.server.master.rest.TavernaServerREST.PolicyView: Gets the maximum number of simultaneous runs that the user may create.
getMaxSimultaneousRuns() - Method in class org.apache.taverna.server.master.TavernaServerSupport
getMemoryClass() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType: Gets the value of the memoryClass property.
getMemoryResourceCapacityAllocated() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType: Gets the value of the memoryResourceCapacityAllocated property.
getMemoryResourceCapacityRequested() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType: Gets the value of the memoryResourceCapacityRequested property.
getMemoryResourceCapacityUsed() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType: Gets the value of the memoryResourceCapacityUsed property.
getMemoryUsageBlock() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecordType: Gets the value of the memoryUsageBlock property.
getMessage() - Method in class org.apache.taverna.server.master.notification.atom.Event
getMetric() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Disk: Gets the value of the metric property.
getMetric() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Memory: Gets the value of the metric property.
getMetric() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Network: Gets the value of the metric property.
getMetric() - Method in class org.apache.taverna.server.usagerecord.xml.urf.NodeCount: Gets the value of the metric property.
getMetric() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Processors: Gets the value of the metric property.
getMetric() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Swap: Gets the value of the metric property.
getMimeType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectType: Gets the value of the mimeType property.
getModificationDate() - Method in class org.apache.taverna.server.localworker.impl.DirectoryDelegate
getModificationDate() - Method in class org.apache.taverna.server.localworker.impl.FileDelegate
getModificationDate() - Method in interface org.apache.taverna.server.localworker.remote.RemoteDirectoryEntry
getModificationDate() - Method in interface org.apache.taverna.server.master.interfaces.DirectoryEntry
getModulus() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.RSAKeyValueType: Gets the value of the modulus property.
getName() - Method in class org.apache.taverna.server.client.generic.DirectoryEntry: Gets the value of the name property.
getName() - Method in class org.apache.taverna.server.client.port.Port: Gets the value of the name property.
getName() - Method in class org.apache.taverna.server.client.rest.FilesystemCreationOperation: Gets the value of the name property.
getName() - Method in class org.apache.taverna.server.client.rest.InputDescription: Gets the value of the name property.
getName() - Method in class org.apache.taverna.server.client.rest.ListenerDescription: Gets the value of the name property.
getName() - Method in class org.apache.taverna.server.client.rest.PropertyDescription: Gets the value of the name property.
getName() - Method in class org.apache.taverna.server.client.rest.RunDescription: Gets the value of the name property.
getName() - Method in class org.apache.taverna.server.client.Run
getName() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.InputName: Get name
getName() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name: Get name
getName() - Method in class org.apache.taverna.server.localworker.impl.DirectoryDelegate
getName() - Method in class org.apache.taverna.server.localworker.impl.FileDelegate
getName() - Method in class org.apache.taverna.server.localworker.impl.WorkerCore
getName() - Method in interface org.apache.taverna.server.localworker.remote.RemoteDirectoryEntry
getName() - Method in interface org.apache.taverna.server.localworker.remote.RemoteInput
getName() - Method in interface org.apache.taverna.server.localworker.remote.RemoteListener
getName() - Method in class org.apache.taverna.server.master.common.Workflow
getName() - Method in interface org.apache.taverna.server.master.interfaces.DirectoryEntry
getName() - Method in interface org.apache.taverna.server.master.interfaces.Input
getName() - Method in interface org.apache.taverna.server.master.interfaces.Listener
getName() - Method in interface org.apache.taverna.server.master.interfaces.MessageDispatcher
getName() - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun
getName() - Method in class org.apache.taverna.server.master.notification.atom.EventDAO
getName() - Method in class org.apache.taverna.server.master.notification.EmailDispatcher
getName() - Method in class org.apache.taverna.server.master.notification.JabberDispatcher
getName() - Method in class org.apache.taverna.server.master.notification.SMSDispatcher
getName() - Method in class org.apache.taverna.server.master.notification.TwitterDispatcher
getName() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Get the workflow name.
getName() - Method in class org.apache.taverna.server.master.utils.UsernamePrincipal
getName(X500Principal, String...) - Method in class org.apache.taverna.server.master.utils.X500Utils: Parse the DN from the Principal and extract the CN field.
getName() - Method in interface org.apache.taverna.server.master.worker.CompletionNotifier
getName() - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
getName() - Method in class org.apache.taverna.server.master.worker.SimpleFormattedCompletionNotifier
getName() - Method in class org.apache.taverna.server.master.worker.VelocityCompletionNotifier
getNativeHost() - Method in class org.apache.taverna.server.localworker.impl.FileDelegate
getNativeHost() - Method in interface org.apache.taverna.server.localworker.remote.RemoteFile
getNativeName() - Method in class org.apache.taverna.server.localworker.impl.FileDelegate
getNativeName() - Method in interface org.apache.taverna.server.localworker.remote.RemoteFile
getNetworkClass() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkUsageBlockType: Gets the value of the networkClass property.
getNetworkInboundUsed() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkUsageBlockType: Gets the value of the networkInboundUsed property.
getNetworkOutboundUsed() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkUsageBlockType: Gets the value of the networkOutboundUsed property.
getNetworkResourceBandwidth() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkClassType: Gets the value of the networkResourceBandwidth property.
getNetworkUsageBlock() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecordType: Gets the value of the networkUsageBlock property.
getNodeCount() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType: Gets the value of the nodeCount property.
getNotifier() - Method in class org.apache.taverna.server.client.rest.EnabledNotificationFabrics: Gets the value of the notifier property.
getObject() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureType: Gets the value of the object property.
getOfType(Class<T>) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
getOperatingCount() - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: How many runs are actually operating?
getOperatingCount() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
getOperatingLimit() - Method in class org.apache.taverna.server.client.rest.PolicyDescription: Gets the value of the operatingLimit property.
getOperatingLimit() - Method in class org.apache.taverna.server.client.TavernaServer
getOperatingLimit() - Method in interface org.apache.taverna.server.master.admin.Admin: Get the maximum number of simultaneous executing runs.
getOperatingLimit() - Method in class org.apache.taverna.server.master.admin.AdminBean
getOperatingLimit() - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: How many runs can be operating at once? Getter
getOperatingLimit() - Method in interface org.apache.taverna.server.master.interfaces.Policy
getOperatingLimit() - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
getOperatingLimit() - Method in interface org.apache.taverna.server.master.worker.PolicyLimits
getOperatingLimit() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
getOutput() - Method in class org.apache.taverna.server.client.port.OutputDescription: Gets the value of the output property.
getOutput() - Method in class org.apache.taverna.server.client.rest.RunDescription: Gets the value of the output property.
getOutputBaclavaFile() - Method in class org.apache.taverna.server.localworker.impl.LocalWorker
getOutputBaclavaFile() - Method in interface org.apache.taverna.server.localworker.remote.RemoteSingleRun
getOutputBaclavaFile() - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun
getOutputBaclavaFile() - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
getOutputDescription(UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Get a description of the outputs.
getOutputFile() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Get the output Baclava file for this workflow run.
getOutputs() - Method in class org.apache.taverna.server.client.Run
getOwner() - Method in class org.apache.taverna.server.client.rest.RunDescription: Gets the value of the owner property.
getOwner() - Method in class org.apache.taverna.server.client.rest.SecurityDescriptor: Gets the value of the owner property.
getOwner() - Method in class org.apache.taverna.server.client.Run
getOwner() - Method in interface org.apache.taverna.server.master.interfaces.TavernaSecurityContext
getOwner() - Method in class org.apache.taverna.server.master.notification.atom.Event
getOwner() - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Gets the identity of who owns the workflow run.
getOwner() - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate
getP() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.DSAKeyValueType: Gets the value of the p property.
getParticularCredential(String) - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Describe a particular credential.
getParticularTrust(String) - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Describe a particular trusted identity.
getPassword() - Method in class org.apache.taverna.server.client.generic.PasswordCredential: Gets the value of the password property.
getPassword() - Method in class org.apache.taverna.server.master.identity.User
getPasswordFile() - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: Where do we get passwords from? Getter
getPasswordFile() - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
getPasswordFile() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
getPasswordFile() - Method in interface org.apache.taverna.server.master.worker.WorkerModel
getPath() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path: Get path
getPath() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path2: Get path
getPath() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path3: Get path
getPermission() - Method in class org.apache.taverna.server.client.rest.LinkedPermissionDescription: Gets the value of the permission property.
getPermission() - Method in class org.apache.taverna.server.client.rest.PermissionDescription: Gets the value of the permission property.
getPermission() - Method in class org.apache.taverna.server.client.rest.PermissionsDescription: Gets the value of the permission property.
getPermission(TavernaSecurityContext, String) - Method in class org.apache.taverna.server.master.TavernaServerSupport: Get the permission description for the given user.
getPermissionMap(TavernaSecurityContext) - Method in class org.apache.taverna.server.master.TavernaServerSupport
getPermissions() - Method in class org.apache.taverna.server.client.rest.SecurityDescriptor: Gets the value of the permissions property.
getPermittedDestroyers() - Method in interface org.apache.taverna.server.master.interfaces.TavernaSecurityContext: Describe the names of the users (as extracted from their Principal objects) that may destroy the run or manipulate its lifetime.
getPermittedDestroyers() - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate
getPermittedListeners() - Method in interface org.apache.taverna.server.master.rest.TavernaServerREST.PolicyView: Gets the list of permitted event listener types.
getPermittedListenerTypes() - Method in class org.apache.taverna.server.client.rest.PolicyDescription: Gets the value of the permittedListenerTypes property.
getPermittedReaders() - Method in interface org.apache.taverna.server.master.interfaces.TavernaSecurityContext: Describe the names of the users (as extracted from their Principal objects) that may read from the run (including its files).
getPermittedReaders() - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate
getPermittedUpdaters() - Method in interface org.apache.taverna.server.master.interfaces.TavernaSecurityContext: Describe the names of the users (as extracted from their Principal objects) that may update the run (including writing to files).
getPermittedUpdaters() - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate
getPermittedWorkflows() - Method in class org.apache.taverna.server.client.rest.PolicyDescription: Gets the value of the permittedWorkflows property.
getPermittedWorkflows() - Method in class org.apache.taverna.server.client.TavernaServer
getPermittedWorkflows() - Method in interface org.apache.taverna.server.master.rest.TavernaServerREST.PolicyView: Gets the list of permitted workflows.
getPermittedWorkflowURIs() - Method in interface org.apache.taverna.server.master.admin.Admin: What are the current list of workflow URIs that may be started? Empty means allow any, including user-supplied workflows.
getPermittedWorkflowURIs() - Method in class org.apache.taverna.server.master.admin.AdminBean
getPermittedWorkflowURIs() - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
getPermittedWorkflowURIs() - Method in class org.apache.taverna.server.master.TavernaServerSupport
getPermittedWorkflowURIs() - Method in interface org.apache.taverna.server.master.worker.PolicyLimits
getPersistenceManager() - Method in class org.apache.taverna.server.master.utils.JDOSupport.PersistenceManagerBuilder
getPgenCounter() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.DSAKeyValueType: Gets the value of the pgenCounter property.
getPhaseUnit() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Disk: Gets the value of the phaseUnit property.
getPhaseUnit() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Memory: Gets the value of the phaseUnit property.
getPhaseUnit() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Network: Gets the value of the phaseUnit property.
getPhaseUnit() - Method in class org.apache.taverna.server.usagerecord.xml.urf.PhaseResource: Gets the value of the phaseUnit property.
getPhaseUnit() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Swap: Gets the value of the phaseUnit property.
getPolicy() - Method in class org.apache.taverna.server.client.rest.ServerDescription: Gets the value of the policy property.
getPolicyDescription() - Method in interface org.apache.taverna.server.master.rest.TavernaServerREST
getPolicyDescription() - Method in class org.apache.taverna.server.master.TavernaServer
getPotentiallyNotifiable() - Method in class org.apache.taverna.server.master.worker.RunDatabaseDAO
getPreferredContentType() - Method in class org.apache.taverna.server.master.common.Workflow: What content type would this workflow "prefer" to be?
getPrefix() - Method in class org.apache.taverna.server.master.identity.AuthorityDerivedIDMapper
getPrimary() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Host: Gets the value of the primary property.
getPrincipal() - Method in class org.apache.taverna.server.master.TavernaServerSupport: Gets the identity of the user currently accessing the webapp, which is stored in a thread-safe way in the webapp's container's context.
getPrincipalName(X500Principal) - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate: Get the human-readable name of a principal.
getProcessId() - Method in class org.apache.taverna.server.usagerecord.xml.urf.JobIdentity: Gets the value of the processId property.
getProcessId() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ExecutionHostType: Gets the value of the processId property.
getProcessors() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType: Gets the value of the processors property.
getProfileDescriptor(Workflow) - Method in class org.apache.taverna.server.master.TavernaServerSupport: Build a description of the profiles supported by a workflow.
getProfiles() - Method in class org.apache.taverna.server.master.common.Workflow
getProfiles() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Get a description of the profiles supported by the workflow document used to create this run.
getProperties() - Method in class org.apache.taverna.server.client.rest.ListenerDescription: Gets the value of the properties property.
getProperties(UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerListenersREST.TavernaServerListenerREST: Get the list of properties supported by a given event listener attached to a workflow run.
getProperty() - Method in class org.apache.taverna.server.client.rest.ListenerDescription.Properties: Gets the value of the property property.
getProperty() - Method in class org.apache.taverna.server.client.rest.Properties: Gets the value of the property property.
getProperty(Property) - Method in class org.apache.taverna.server.client.Run
getProperty(String) - Method in class org.apache.taverna.server.localworker.impl.WorkerCore
getProperty(String) - Method in interface org.apache.taverna.server.localworker.remote.RemoteListener: Get the value of a particular property, which should be listed in the RemoteListener.listProperties() method.
getProperty(String) - Method in interface org.apache.taverna.server.master.interfaces.Listener: Get the value of a particular property, which should be listed in the Listener.listProperties() method.
getProperty(String) - Method in interface org.apache.taverna.server.master.rest.TavernaServerListenersREST.TavernaServerListenerREST: Get an object representing a particular property.
getProperty(String, String, String) - Method in class org.apache.taverna.server.master.TavernaServerSupport: Obtain a property from a listener that is already attached to a workflow run.
getProperty(TavernaRun, String, String) - Method in class org.apache.taverna.server.master.TavernaServerSupport: Obtain a property from a listener that is already attached to a workflow run.
getPropertyname() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name.PropertiesPropertyName: Get propertyName
getProtocol() - Method in class org.apache.taverna.server.master.utils.CertificateChainFetcher
getProv(TavernaRun) - Method in class org.apache.taverna.server.master.TavernaServerSupport
getPublished() - Method in class org.apache.taverna.server.master.notification.atom.Event
getQ() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.DSAKeyValueType: Gets the value of the q property.
getQueue() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType: Gets the value of the queue property.
getReaders() - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
getRealRun(UsernamePrincipal, Workflow, UUID) - Method in class org.apache.taverna.server.master.localworker.AbstractRemoteRunFactory: Gets the RMI connector for a new run.
getRealRun(UsernamePrincipal, Workflow, UUID) - Method in class org.apache.taverna.server.master.localworker.ForkRunFactory
getRealRun(UsernamePrincipal, Workflow, UUID) - Method in class org.apache.taverna.server.master.localworker.IdAwareForkRunFactory
getRecordId() - Method in class org.apache.taverna.server.usagerecord.xml.urf.RecordIdentity: Gets the value of the recordId property.
getRecordId() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.RecordIdentityBlockType: Gets the value of the recordId property.
getRecordIdentity() - Method in class org.apache.taverna.server.usagerecord.xml.urf.UsageRecordType: Gets the value of the recordIdentity property.
getRecordIdentityBlock() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecordType: Gets the value of the recordIdentityBlock property.
getReference() - Method in class org.apache.taverna.server.client.rest.InputDescription: Gets the value of the reference property.
getReference() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ManifestType: Gets the value of the reference property.
getReference() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignedInfoType: Gets the value of the reference property.
getRegistrationPollMillis() - Method in interface org.apache.taverna.server.master.admin.Admin: Get the interval between checks for registration of the forker process.
getRegistrationPollMillis() - Method in class org.apache.taverna.server.master.admin.AdminBean
getRegistrationWaitSeconds() - Method in interface org.apache.taverna.server.master.admin.Admin: Get the total duration of time to wait for the start of the forker process.
getRegistrationWaitSeconds() - Method in class org.apache.taverna.server.master.admin.AdminBean
getRegistryHost() - Method in interface org.apache.taverna.server.master.admin.Admin: Get the location of the RMI registry.
getRegistryHost() - Method in class org.apache.taverna.server.master.admin.AdminBean
getRegistryHost() - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: Where is the registry? Getter
getRegistryHost() - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
getRegistryHost() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
getRegistryHost() - Method in interface org.apache.taverna.server.master.worker.WorkerModel
getRegistryJar() - Method in interface org.apache.taverna.server.master.admin.Admin: Get the full pathname of the RMI registry's JAR.
getRegistryJar() - Method in class org.apache.taverna.server.master.admin.AdminBean
getRegistryJar() - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
getRegistryJar() - Method in interface org.apache.taverna.server.master.worker.WorkerModel
getRegistryPort() - Method in interface org.apache.taverna.server.master.admin.Admin: Get the port of the RMI registry.
getRegistryPort() - Method in class org.apache.taverna.server.master.admin.AdminBean
getRegistryPort() - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: Where is the registry? Getter
getRegistryPort() - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
getRegistryPort() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
getRegistryPort() - Method in interface org.apache.taverna.server.master.worker.WorkerModel
getResource(String) - Method in class org.apache.taverna.server.master.admin.AdminBean
getRmiRegistryJar() - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: How do we start the RMI registry process? Getter
getRmiRegistryJar() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
getRun() - Method in class org.apache.taverna.server.client.rest.RunList: Gets the value of the run property.
getRun(UsernamePrincipal, Policy, String) - Method in interface org.apache.taverna.server.master.interfaces.RunStore: Obtain the workflow run for a given user and name.
getRun(String) - Method in interface org.apache.taverna.server.master.interfaces.RunStore: Obtain the named workflow run.
getRun(String) - Method in class org.apache.taverna.server.master.TavernaServerSupport: Obtain the workflow run with a particular name.
getRun(UsernamePrincipal, Policy, String) - Method in class org.apache.taverna.server.master.worker.RunDatabase
getRun(String) - Method in class org.apache.taverna.server.master.worker.RunDatabase
getRunasPasswordFile() - Method in interface org.apache.taverna.server.master.admin.Admin: Get the full pathname of the file containing the impersonation credentials for the forker process.
getRunasPasswordFile() - Method in class org.apache.taverna.server.master.admin.AdminBean
getRunBundle() - Method in class org.apache.taverna.server.client.rest.RunDescription: Gets the value of the runBundle property.
getRunBundle() - Method in class org.apache.taverna.server.client.Run
getRunBundle() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST
getRunBundle(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Returns the run bundle of a run.
getRunBundle(String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunCertificates(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the certificate collections associated with the run.
getRunCertificates(String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunCreationTime(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the time when the run was created.
getRunCreationTime(String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunCredentials(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the credentials associated with the run.
getRunCredentials(String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunDescriptiveName(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the descriptive name of the workflow run.
getRunDescriptiveName(String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunDirectoryAsZip(String, DirEntry) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the contents of any directory (and its subdirectories) at/under the run's working directory, returning it as a compressed ZIP file.
getRunDirectoryAsZip(String, DirEntry) - Method in class org.apache.taverna.server.master.TavernaServer
getRunDirectoryAsZipMTOM(String, DirEntry) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the contents of any directory (and its subdirectories) at/under the run's working directory, returning it as a compressed ZIP file that is streamed via MTOM.
getRunDirectoryAsZipMTOM(String, DirEntry) - Method in class org.apache.taverna.server.master.TavernaServer
getRunDirectoryContents(String, DirEntry) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the contents of any directory at/under the run's working directory.
getRunDirectoryContents(String, DirEntry) - Method in class org.apache.taverna.server.master.TavernaServer
getRunExpiry(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the time when the run will be eligible to be automatically deleted.
getRunExpiry(String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunFeed(TavernaRun) - Method in class org.apache.taverna.server.master.interaction.InteractionFeedSupport: Get the interaction feed for a partciular run.
getRunFeedEntry(TavernaRun, String) - Method in class org.apache.taverna.server.master.interaction.InteractionFeedSupport: Gets the contents of a particular feed entry.
getRunFileContents(String, DirEntry) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the contents of a file under the run's working directory.
getRunFileContents(String, DirEntry) - Method in class org.apache.taverna.server.master.TavernaServer
getRunFileContentsMTOM(String, DirEntry) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the contents of a file under the run's working directory via MTOM.
getRunFileContentsMTOM(String, DirEntry) - Method in class org.apache.taverna.server.master.TavernaServer
getRunFileLength(String, DirEntry) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the length of any file (in bytes) at/under the run's working directory.
getRunFileLength(String, DirEntry) - Method in class org.apache.taverna.server.master.TavernaServer
getRunFileModified(String, DirEntry) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the time that the file or directory (at/under the run's working directory) was last modified.
getRunFileModified(String, DirEntry) - Method in class org.apache.taverna.server.master.TavernaServer
getRunFileType(String, DirEntry) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the content type of any file at/under the run's working directory.
getRunFileType(String, DirEntry) - Method in class org.apache.taverna.server.master.TavernaServer
getRunFinishTime(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the time when the run was detected as having finished.
getRunFinishTime(String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunGenerateProvenance(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Gets whether to generate provenance (in a run bundle) for a run.
getRunGenerateProvenance(String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunInputDescriptor(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get a description of what inputs the workflow run expects to receive.
getRunInputDescriptor(String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunInputs(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the description of the inputs to the workflow run.
getRunInputs(String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunLimit() - Method in class org.apache.taverna.server.client.rest.PolicyDescription: Gets the value of the runLimit property.
getRunLimit() - Method in class org.apache.taverna.server.client.TavernaServer
getRunLimit() - Method in interface org.apache.taverna.server.master.admin.Admin: Get the maximum number of simultaneous runs.
getRunLimit() - Method in class org.apache.taverna.server.master.admin.AdminBean
getRunListenerConfiguration(String, String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the configuration document for an event listener attached to a run.
getRunListenerConfiguration(String, String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunListenerProperties(String, String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the list of properties supported by an event listener attached to a run.
getRunListenerProperties(String, String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunListenerProperty(String, String, String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the value of a property for an event listener attached to a run.
getRunListenerProperty(String, String, String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunListeners(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the names of the event listeners attached to the run.
getRunListeners(String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunLog(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Returns the log of the workflow run.
getRunLog(String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunname() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName: Get runName
getRunOutputBaclavaFile(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the Baclava file where the output of the run will be written.
getRunOutputBaclavaFile(String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunOutputDescription(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Return a description of the outputs of a run.
getRunOutputDescription(String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunOwner(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the owner of the run.
getRunOwner(String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunResource(String, UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerREST: Get a particular named run resource.
getRunResource(String, UriInfo) - Method in class org.apache.taverna.server.master.TavernaServer
getRuns() - Method in class org.apache.taverna.server.client.rest.ServerDescription: Gets the value of the runs property.
getRunStartTime(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the time when the run was started.
getRunStartTime(String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunStatus(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the current status of the run.
getRunStatus(String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunStderr(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Returns the standard error of the workflow run.
getRunStderr(String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunStdout(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Returns the standard output of the workflow run.
getRunStdout(String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunUriBuilder(TavernaRun) - Method in interface org.apache.taverna.server.master.interfaces.UriBuilderFactory: Given a run, get a factory for RESTful URIs to resources associated with it.
getRunUriBuilder(TavernaRun) - Method in class org.apache.taverna.server.master.notification.atom.AtomFeed
getRunUriBuilder(TavernaRun) - Method in class org.apache.taverna.server.master.TavernaServer
getRunUsageRecord(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Returns the usage record for the workflow run.
getRunUsageRecord(String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunWorkflow(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the workflow document used to create the given run.
getRunWorkflow(String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunWorkflowMTOM(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the workflow document used to create the given run.
getRunWorkflowMTOM(String) - Method in class org.apache.taverna.server.master.TavernaServer
getRunWorkflowProfiles(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get a description of the profiles supported by the workflow document used to create the given run.
getRunWorkflowProfiles(String) - Method in class org.apache.taverna.server.master.TavernaServer
getScufl2Bytes() - Method in class org.apache.taverna.server.master.common.Workflow: Get the bytes of the serialized SCUFL2 workflow.
getScufl2Workflow() - Method in class org.apache.taverna.server.master.common.Workflow: Retrieves the workflow as a SCUFL2 document, converting it if necessary.
getSecuredUriBuilder(UriBuilder) - Method in class org.apache.taverna.server.master.common.Uri.Rewriter
getSecurity() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Returns a resource that represents the workflow run's security properties.
getSecurityContext() - Method in class org.apache.taverna.server.client.rest.RunDescription: Gets the value of the securityContext property.
getSecurityContext() - Method in class org.apache.taverna.server.localworker.impl.LocalWorker
getSecurityContext() - Method in interface org.apache.taverna.server.localworker.remote.RemoteSingleRun
getSecurityContext() - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun
getSecurityContext() - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
getSecurityToken() - Method in class org.apache.taverna.server.master.worker.RunConnection
getSecurityToken(String) - Method in class org.apache.taverna.server.master.worker.RunDatabaseDAO
getSeed() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.DSAKeyValueType: Gets the value of the seed property.
getSerial(X509Certificate) - Method in class org.apache.taverna.server.master.utils.X500Utils: Get the serial number from a certificate as a hex string.
getServerBuildTimestamp() - Method in class org.apache.taverna.server.client.generic.VersionedElement: Gets the value of the serverBuildTimestamp property.
getServerCapabilities() - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP
getServerCapabilities() - Method in class org.apache.taverna.server.master.TavernaServer
getServerForkerJar() - Method in interface org.apache.taverna.server.master.admin.Admin: Get the full pathname of the forker's JAR.
getServerForkerJar() - Method in class org.apache.taverna.server.master.admin.AdminBean
getServerForkerJar() - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: How do we switch users? Getter
getServerForkerJar() - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
getServerForkerJar() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
getServerForkerJar() - Method in interface org.apache.taverna.server.master.worker.WorkerModel
getServerListeners() - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the list of allowed event listeners.
getServerListeners() - Method in class org.apache.taverna.server.master.TavernaServer
getServerMaxRuns() - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the upper limit on the number of runs that the user may create at once.
getServerMaxRuns() - Method in class org.apache.taverna.server.master.TavernaServer
getServerName() - Method in class org.apache.taverna.server.client.generic.TrustDescriptor: Gets the value of the serverName property.
getServerNotifiers() - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the list of notification fabrics.
getServerNotifiers() - Method in class org.apache.taverna.server.master.TavernaServer
getServerRevision() - Method in class org.apache.taverna.server.client.generic.VersionedElement: Gets the value of the serverRevision property.
getServerStatus() - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Gets the status of the server.
getServerStatus() - Method in class org.apache.taverna.server.master.TavernaServer
getServerVersion() - Method in class org.apache.taverna.server.client.generic.TavernaRun: Gets the value of the serverVersion property.
getServerVersion() - Method in class org.apache.taverna.server.client.generic.VersionedElement: Gets the value of the serverVersion property.
getServerVersion() - Method in class org.apache.taverna.server.master.TavernaServerSupport
getServerVersionInfo() - Method in class org.apache.taverna.server.client.TavernaServer
getServerWorkerJar() - Method in interface org.apache.taverna.server.master.admin.Admin: Get the full pathname of the worker JAR file.
getServerWorkerJar() - Method in class org.apache.taverna.server.master.admin.AdminBean
getServerWorkerJar() - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: How do we start the file system access process? Getter
getServerWorkerJar() - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
getServerWorkerJar() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
getServerWorkerJar() - Method in interface org.apache.taverna.server.master.worker.WorkerModel
getServerWorkflows() - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the list of allowed workflows.
getServerWorkflows() - Method in class org.apache.taverna.server.master.TavernaServer
getServiceLevel() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType: Gets the value of the serviceLevel property.
getServiceLevel() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType: Gets the value of the serviceLevel property.
getServiceURI() - Method in class org.apache.taverna.server.client.generic.CredentialDescriptor: Gets the value of the serviceURI property.
getSignatureMethod() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignedInfoType: Gets the value of the signatureMethod property.
getSignatureProperty() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignaturePropertiesType: Gets the value of the signatureProperty property.
getSignatureValue() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureType: Gets the value of the signatureValue property.
getSignedInfo() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureType: Gets the value of the signedInfo property.
getSite() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.RecordIdentityBlockType: Gets the value of the site property.
getSize() - Method in class org.apache.taverna.server.localworker.impl.FileDelegate
getSize() - Method in interface org.apache.taverna.server.localworker.remote.RemoteFile
getSize() - Method in interface org.apache.taverna.server.master.interfaces.File
getSize(Entry, Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.EntryHandler
getSize(Feed, Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.FeedHandler
getSize(FileConcatenation, Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.FileConcatenationHandler
getSize(File, Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.FileMessageHandler
getSize(FileSegment, Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.FileSegmentHandler
getSize(Permission, Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.PermissionHandler
getSize(Workflow, Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.Scufl2DocumentHandler
getSize(Workflow, Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.T2FlowDocumentHandler
getSize(List<URI>, Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.URIListHandler
getSize(Directory.ZipStream, Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.ZipStreamHandler
getSleepMS() - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
getSleepMS() - Method in interface org.apache.taverna.server.master.worker.WorkerModel
getSleepTime() - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: How often do we probe for info? Getter
getSleepTime() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
getSourceAddress() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkInboundUsedType: Gets the value of the sourceAddress property.
getSPKISexpAndAny() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SPKIDataType: Gets the value of the spkiSexpAndAny property.
getStandardError() - Method in class org.apache.taverna.server.client.Run
getStandardOutput() - Method in class org.apache.taverna.server.client.Run
getStart() - Method in class org.apache.taverna.server.client.Run
getStartTime() - Method in class org.apache.taverna.server.client.rest.RunDescription: Gets the value of the startTime property.
getStartTime() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Returns the time when the workflow run was started (through a user-driven state change).
getStartTime() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType: Gets the value of the startTime property.
getStartTime() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType: Gets the value of the startTime property.
getStartTime() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Gets the value of the startTime property.
getStartTimestamp() - Method in class org.apache.taverna.server.localworker.impl.LocalWorker
getStartTimestamp() - Method in interface org.apache.taverna.server.localworker.remote.RemoteSingleRun
getStartTimestamp() - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun
getStartTimestamp() - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
getStaticResource(String) - Method in interface org.apache.taverna.server.master.admin.Admin: Gets support resources for the administration user interface.
getStaticResource(String) - Method in class org.apache.taverna.server.master.admin.AdminBean
getStatus() - Method in class org.apache.taverna.server.client.rest.RunDescription: Gets the value of the status property.
getStatus() - Method in class org.apache.taverna.server.client.Run
getStatus() - Method in class org.apache.taverna.server.localworker.impl.LocalWorker
getStatus() - Method in interface org.apache.taverna.server.localworker.remote.RemoteSingleRun
getStatus() - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun
getStatus() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Gets the current status of the workflow run.
getStatus() - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
getStatus() - Method in class org.apache.taverna.server.usagerecord.xml.urf.UsageRecordType: Gets the value of the status property.
getStatus() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType: Gets the value of the status property.
getStatus() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType: Gets the value of the status property.
getStderr() - Method in class org.apache.taverna.server.client.rest.RunDescription: Gets the value of the stderr property.
getStderr() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST
getStdout() - Method in class org.apache.taverna.server.client.rest.RunDescription: Gets the value of the stdout property.
getStdout() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST
getStorageClass() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Gets the value of the storageClass property.
getStorageLogicalCapacityUsed() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Gets the value of the storageLogicalCapacityUsed property.
getStorageMedia() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Gets the value of the storageMedia property.
getStorageResourceCapacityAllocated() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Gets the value of the storageResourceCapacityAllocated property.
getStorageResourceCapacityUsed() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Gets the value of the storageResourceCapacityUsed property.
getStorageShare() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Gets the value of the storageShare property.
getStorageUnit() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Disk: Gets the value of the storageUnit property.
getStorageUnit() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Memory: Gets the value of the storageUnit property.
getStorageUnit() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Network: Gets the value of the storageUnit property.
getStorageUnit() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Swap: Gets the value of the storageUnit property.
getStorageUnit() - Method in class org.apache.taverna.server.usagerecord.xml.urf.VolumeResource: Gets the value of the storageUnit property.
getStorageUsageBlock() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecordType: Gets the value of the storageUsageBlock property.
getSubjectIdentityBlock() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecordType: Gets the value of the subjectIdentityBlock property.
getSubmitHost() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType: Gets the value of the submitHost property.
getSubmitHost() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType: Gets the value of the submitHost property.
getSubmitType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType: Gets the value of the submitType property.
getSupportedListenerTypes() - Method in interface org.apache.taverna.server.master.factories.ListenerFactory: What types of listener are supported? Note that we assume that the list of types is the same for all users and all workflow instances.
getSupportedListenerTypes() - Method in class org.apache.taverna.server.master.localworker.AbstractRemoteRunFactory
getSuspendDuration() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType: Gets the value of the suspendDuration property.
getT2flowWorkflow() - Method in class org.apache.taverna.server.master.common.Workflow: Retrieves the workflow as a T2Flow document, converting it if necessary.
getTarget() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignaturePropertyType: Gets the value of the target property.
getTheRegistry() - Method in class org.apache.taverna.server.master.localworker.AbstractRemoteRunFactory
getThreshold() - Method in class org.apache.taverna.server.master.utils.CallTimeLogger
getTimeInstant() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType: Gets the value of the timeInstant property.
getTimeInstant() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType: Gets the value of the timeInstant property.
getTimeout() - Method in class org.apache.taverna.server.master.utils.CertificateChainFetcher
getTitle() - Method in class org.apache.taverna.server.master.notification.atom.Event
getTitle(String) - Method in interface org.apache.taverna.server.master.notification.NotificationEngine.Message
getTotalRuns() - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: How many runs have there been?
getTotalRuns() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
getTransform() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.TransformsType: Gets the value of the transform property.
getTransforms() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ReferenceType: Gets the value of the transforms property.
getTransforms() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.RetrievalMethodType: Gets the value of the transforms property.
getTrust() - Method in class org.apache.taverna.server.client.rest.TrustCollection: Gets the value of the trust property.
getTrust() - Method in class org.apache.taverna.server.client.rest.TrustList: Gets the value of the trust property.
getTrusted() - Method in interface org.apache.taverna.server.master.interfaces.TavernaSecurityContext
getTrusted() - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate
getTrusts() - Method in class org.apache.taverna.server.client.rest.SecurityDescriptor: Gets the value of the trusts property.
getTrustsForURI(URI) - Method in class org.apache.taverna.server.master.utils.CertificateChainFetcher: Gets the certificate chain for a service identified by URI.
getType() - Method in class org.apache.taverna.server.client.rest.ListenerDefinition: Gets the value of the type property.
getType() - Method in class org.apache.taverna.server.client.rest.ListenerDescription: Gets the value of the type property.
getType() - Method in class org.apache.taverna.server.client.rest.PermittedListeners: Gets the value of the type property.
getType() - Method in class org.apache.taverna.server.localworker.impl.WorkerCore
getType() - Method in interface org.apache.taverna.server.localworker.remote.RemoteListener
getType() - Method in interface org.apache.taverna.server.master.interfaces.Listener
getType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ReferenceType: Gets the value of the type property.
getType() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.RetrievalMethodType: Gets the value of the type property.
getType() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Disk: Gets the value of the type property.
getType() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Memory: Gets the value of the type property.
getType() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ServiceLevel: Gets the value of the type property.
getType() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Swap: Gets the value of the type property.
getType() - Method in class org.apache.taverna.server.usagerecord.xml.urf.TimeDuration: Gets the value of the type property.
getType() - Method in class org.apache.taverna.server.usagerecord.xml.urf.TimeInstant: Gets the value of the type property.
getType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.BenchmarkType: Gets the value of the type property.
getType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.GlobalGroupAttributeType: Gets the value of the type property.
getType() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.TimeInstantType: Gets the value of the type property.
getUnit() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Charge: Gets the value of the unit property.
getUnits() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ConsumableResourceType: Gets the value of the units property.
getUnlockPassword() - Method in class org.apache.taverna.server.client.generic.KeyPairCredential: Gets the value of the unlockPassword property.
getURFile() - Method in interface org.apache.taverna.server.master.admin.Admin: Get what file to dump usage records to.
getURFile() - Method in class org.apache.taverna.server.master.admin.AdminBean
getURI() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ReferenceType: Gets the value of the uri property.
getURI() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.RetrievalMethodType: Gets the value of the uri property.
getUsage() - Method in class org.apache.taverna.server.client.rest.RunDescription: Gets the value of the usage property.
getUsage() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST
getUsage() - Method in class org.apache.taverna.server.usagerecord.xml.urf.UsageRecords: Gets the value of the usage property.
getUsage() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecords: Gets the value of the usage property.
getUsageRecord() - Method in class org.apache.taverna.server.client.Run
getUsageRecord() - Method in class org.apache.taverna.server.master.usage.UsageRecord
getUsageRecordLogFile() - Method in interface org.apache.taverna.server.master.api.ManagementModel
getUsageRecords() - Method in class org.apache.taverna.server.master.usage.UsageRecordRecorder
getUsageType() - Method in class org.apache.taverna.server.usagerecord.xml.urf.CpuDuration: Gets the value of the usageType property.
getUser(String) - Method in class org.apache.taverna.server.master.identity.UserStore
getUser(String) - Method in interface org.apache.taverna.server.master.identity.UserStoreAPI: Get a particular user's description.
getUserid() - Method in class org.apache.taverna.server.master.usage.UsageRecord
getUserIdentity() - Method in class org.apache.taverna.server.usagerecord.xml.urf.UsageRecordType: Gets the value of the userIdentity property.
getUserInfo(String) - Method in class org.apache.taverna.server.master.identity.UserStore: Get information about a server account.
getUserInterface() - Method in interface org.apache.taverna.server.master.admin.Admin: Get a simple administration user interface.
getUserInterface() - Method in class org.apache.taverna.server.master.admin.AdminBean
getUsername() - Method in class org.apache.taverna.server.client.generic.PasswordCredential: Gets the value of the username property.
getUserName() - Method in class org.apache.taverna.server.client.rest.LinkedPermissionDescription: Gets the value of the userName property.
getUserName() - Method in class org.apache.taverna.server.client.rest.PermissionDescription: Gets the value of the userName property.
getUsername() - Method in class org.apache.taverna.server.master.identity.User
getUsernameForPrincipal(UsernamePrincipal) - Method in class org.apache.taverna.server.master.identity.AuthorityDerivedIDMapper
getUsernameForPrincipal(UsernamePrincipal) - Method in class org.apache.taverna.server.master.identity.CompositeIDMapper
getUsernameForPrincipal(UsernamePrincipal) - Method in class org.apache.taverna.server.master.identity.ConstantIDMapper
getUsernameForPrincipal(UsernamePrincipal) - Method in class org.apache.taverna.server.master.identity.NameIDMapper
getUsernameForPrincipal(UsernamePrincipal) - Method in class org.apache.taverna.server.master.identity.WorkflowInternalAuthProvider.WorkflowSelfIDMapper
getUsernameForPrincipal(UsernamePrincipal) - Method in interface org.apache.taverna.server.master.interfaces.LocalIdentityMapper: Given a user's identity, get the local identity to use for executing their workflows.
getUserNames() - Method in class org.apache.taverna.server.master.identity.UserStore
getUserNames() - Method in interface org.apache.taverna.server.master.identity.UserStoreAPI: List the currently-known account names.
getUserpass() - Method in class org.apache.taverna.server.client.rest.Credential: Gets the value of the userpass property.
getUserpass() - Method in class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.CredentialHolder: Convenience accessor function.
getValidatedExistingFile(File, String) - Static method in class org.apache.taverna.server.localworker.impl.utils.FilenameVerifier: Create a file handle where the underlying file must exist.
getValidatedFile(File, String...) - Static method in class org.apache.taverna.server.localworker.impl.utils.FilenameVerifier: Construct a file handle, applying platform-specific filename validation rules in the process.
getValidatedNewFile(File, String) - Static method in class org.apache.taverna.server.localworker.impl.utils.FilenameVerifier: Create a file handle where the underlying file must not exist.
getValue() - Method in class org.apache.taverna.server.client.generic.DirectoryEntry: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.client.generic.TavernaRun: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.client.port.OutputPort: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.client.rest.FilesystemCreationOperation: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.client.rest.InputDescription.File: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.client.rest.InputDescription: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.client.rest.InputDescription.Reference: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.client.rest.InputDescription.Value: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.client.rest.ListenerDefinition: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.client.rest.RunDescription.Expiry: Gets the value of the value property.
getValue() - Method in interface org.apache.taverna.server.localworker.remote.RemoteInput
getValue() - Method in interface org.apache.taverna.server.master.interfaces.Input
getValue() - Method in interface org.apache.taverna.server.master.rest.TavernaServerListenersREST.Property: Get the value of the particular property of an event listener attached to a workflow run.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureValueType: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Charge: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ConsumableResourceType: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.CpuDuration: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Disk: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.EndTime: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Host: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.JobName: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.MachineName: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Memory: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Network: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.NodeCount: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Processors: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ProjectName: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Queue: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ResourceType: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.ServiceLevel: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.StartTime: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Status: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.SubmitHost: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.Swap: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.TimeDuration: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.TimeInstant: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf.WallDuration: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.BenchmarkType: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.GlobalGroupAttributeType: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.HostnameType: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.InfrastructureType: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkClassType: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkInboundUsedType: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkOutboundUsedType: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.QueueType: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.SubmitTypeType: Gets the value of the value property.
getValue() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.TimeInstantType: Gets the value of the value property.
getValueOrListOrError() - Method in class org.apache.taverna.server.client.port.ListValue: Gets the value of the valueOrListOrError property.
getVersion() - Method in class org.apache.taverna.server.client.generic.Capability: Gets the value of the version property.
getWaitSeconds() - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: How long do we allow for actions? Getter
getWaitSeconds() - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
getWaitSeconds() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
getWaitSeconds() - Method in interface org.apache.taverna.server.master.worker.WorkerModel
getWallDuration() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType: Gets the value of the wallDuration property.
getWallDurationOrCpuDurationOrNodeCount() - Method in class org.apache.taverna.server.usagerecord.xml.urf.UsageRecordType: Gets the value of the wallDurationOrCpuDurationOrNodeCount property.
getWorkerStatus() - Method in interface org.apache.taverna.server.localworker.api.Worker
getWorkerStatus() - Method in class org.apache.taverna.server.localworker.impl.WorkerCore
getWorkflow() - Method in class org.apache.taverna.server.client.rest.PermittedWorkflows: Gets the value of the workflow property.
getWorkflow() - Method in class org.apache.taverna.server.client.Run
getWorkflow() - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun
getWorkflow() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Returns the workflow document used to create the workflow run.
getWorkflow() - Method in class org.apache.taverna.server.master.soap.WrappedWorkflow
getWorkflow() - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
getWorkflowDocumentFromURI(URI) - Method in class org.apache.taverna.server.master.TavernaServerSupport
getWorkflowId() - Method in class org.apache.taverna.server.client.port.PortDescription: Gets the value of the workflowId property.
getWorkflowID() - Method in class org.apache.taverna.server.master.identity.WorkflowInternalAuthProvider.WorkflowSelfAuthority
getWorkflowRoot() - Method in class org.apache.taverna.server.master.common.Workflow
getWorkflowRun() - Method in class org.apache.taverna.server.client.port.PortDescription: Gets the value of the workflowRun property.
getWorkflowRunId() - Method in class org.apache.taverna.server.client.port.PortDescription: Gets the value of the workflowRunId property.
getWorkingDirectory() - Method in class org.apache.taverna.server.client.rest.RunDescription: Gets the value of the workingDirectory property.
getWorkingDirectory() - Method in class org.apache.taverna.server.client.Run
getWorkingDirectory() - Method in class org.apache.taverna.server.localworker.impl.LocalWorker
getWorkingDirectory() - Method in interface org.apache.taverna.server.localworker.remote.RemoteSingleRun
getWorkingDirectory() - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun
getWorkingDirectory() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Get the working directory of this workflow run.
getWorkingDirectory() - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
getWriters() - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
getX509IssuerName() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.X509IssuerSerialType: Gets the value of the x509IssuerName property.
getX509IssuerSerialOrX509SKIOrX509SubjectName() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.X509DataType: Gets the value of the x509IssuerSerialOrX509SKIOrX509SubjectName property.
getX509SerialNumber() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.X509IssuerSerialType: Gets the value of the x509SerialNumber property.
getY() - Method in class org.apache.taverna.server.usagerecord.xml.dsig.DSAKeyValueType: Gets the value of the y property.
getZip() - Method in class org.apache.taverna.server.client.Directory
getZippedContents() - Method in class org.apache.taverna.server.client.Directory
globalGroupAttribute - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.SubjectIdentityBlockType
GlobalGroupAttributeType - Class in org.apache.taverna.server.usagerecord.xml.urf2: Open Grid Forum GFD.204 Usage Record type GlobalGroupAttributeType
GlobalGroupAttributeType() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf2.GlobalGroupAttributeType
globalGroupId - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.SubjectIdentityBlockType
globalJobId - Variable in class org.apache.taverna.server.usagerecord.xml.urf.JobIdentity
globalJobId - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType
globalUserId - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.SubjectIdentityBlockType
globalUserName - Variable in class org.apache.taverna.server.usagerecord.xml.urf.UserIdentity
globalVirtualMachineId - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType
grantKeyCredential(URI, File, String, String) - Method in class org.apache.taverna.server.client.Run
grantPasswordCredential(URI, String, String) - Method in class org.apache.taverna.server.client.Run

H

handleMessage(Message) - Method in class org.apache.taverna.server.master.utils.FlushThreadLocalCacheInterceptor
handleMessage(Message) - Method in class org.apache.taverna.server.master.utils.WSDLHeadOptionsInterceptor
HandlerCore - Class in org.apache.taverna.server.master.rest.handler: Base class for handlers that grants Spring-enabled access to the management model.
HandlerCore() - Constructor for class org.apache.taverna.server.master.rest.handler.HandlerCore
hashCode() - Method in class org.apache.taverna.server.master.common.Credential
hashCode() - Method in class org.apache.taverna.server.master.common.Trust
hashCode() - Method in class org.apache.taverna.server.master.utils.UsernamePrincipal
HELIO_TOKEN_NAME - Static variable in class org.apache.taverna.server.localworker.api.Constants: Name of environment variable used to pass HELIO security tokens to workflows.
Host - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type Host
Host() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.Host
host - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType
hostname - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.ExecutionHostType
HostnameType - Class in org.apache.taverna.server.usagerecord.xml.urf2: Open Grid Forum GFD.204 Usage Record type HostnameType
HostnameType() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf2.HostnameType
hostType - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType
hostType - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType
hostType - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType
href - Variable in class org.apache.taverna.server.client.generic.CredentialDescriptor
href - Variable in class org.apache.taverna.server.client.generic.DirectoryEntry
href - Variable in class org.apache.taverna.server.client.generic.Location
href - Variable in class org.apache.taverna.server.client.generic.TavernaRun
href - Variable in class org.apache.taverna.server.client.generic.TrustDescriptor
href - Variable in class org.apache.taverna.server.client.port.InputPort
href - Variable in class org.apache.taverna.server.client.port.Value
href - Variable in class org.apache.taverna.server.client.rest.CredentialCollection
href - Variable in class org.apache.taverna.server.client.rest.ListenerDescription
href - Variable in class org.apache.taverna.server.client.rest.RunDescription.Expiry
href - Variable in class org.apache.taverna.server.client.rest.TrustCollection
href - Variable in class org.apache.taverna.server.master.common.Credential: The location of this descriptor in the REST world.
href - Variable in class org.apache.taverna.server.master.common.Trust: The location of this descriptor in the REST world.
href - Variable in class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.Descriptor.Credentials: Reference to the collection of credentials
href - Variable in class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.Descriptor.Trusts: Reference to the collection of trusted certs
href - Variable in class org.apache.taverna.server.port_description.AbstractValue
href - Variable in class org.apache.taverna.server.port_description.InputDescription.InputPort
HTML - Static variable in interface org.apache.taverna.server.master.common.version.Version

I

id(String) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Interaction
Id(Client, URI, String) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Interaction.Id: Create new instance using existing Client instance, and a base URI and any parameters
Id(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Interaction.Id: Create new instance using existing Client instance, and the URI from which the parameters will be extracted
id - Variable in class org.apache.taverna.server.master.common.Credential: The location of this descriptor in the SOAP world.
id - Variable in class org.apache.taverna.server.master.common.Trust: The location of this descriptor in the SOAP world.
id - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.KeyInfoType
id - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.ManifestType
id - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectType
id - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.ReferenceType
id - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.SignaturePropertiesType
id - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.SignaturePropertyType
id - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureType
id - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureValueType
id - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.SignedInfoType
IdAwareForkRunFactory - Class in org.apache.taverna.server.master.localworker: A simple factory for workflow runs that forks runs from a subprocess.
IdAwareForkRunFactory() - Constructor for class org.apache.taverna.server.master.localworker.IdAwareForkRunFactory: Create a factory for remote runs that works by forking off a subprocess.
IdAwareForkRunFactory.MetaFactory - Interface in org.apache.taverna.server.master.localworker: How construction of factories is actually done.
IllegalArgumentHandler - Class in org.apache.taverna.server.master.rest.handler
IllegalArgumentHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.IllegalArgumentHandler
IllegalStateTransitionException - Exception in org.apache.taverna.server.localworker.remote: Exception that indicates where a change of a workflow run's status is illegal.
IllegalStateTransitionException() - Constructor for exception org.apache.taverna.server.localworker.remote.IllegalStateTransitionException
IllegalStateTransitionException(String) - Constructor for exception org.apache.taverna.server.localworker.remote.IllegalStateTransitionException
IllegalStateTransitionException(Throwable) - Constructor for exception org.apache.taverna.server.localworker.remote.IllegalStateTransitionException
IllegalStateTransitionException(String, Throwable) - Constructor for exception org.apache.taverna.server.localworker.remote.IllegalStateTransitionException
imageId - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType
ImplementationException - Exception in org.apache.taverna.server.localworker.remote: Exception that indicates that the implementation has gone wrong in some unexpected way.
ImplementationException(String) - Constructor for exception org.apache.taverna.server.localworker.remote.ImplementationException
ImplementationException(String, Throwable) - Constructor for exception org.apache.taverna.server.localworker.remote.ImplementationException
ImplementationProblemHandler - Class in org.apache.taverna.server.master.rest.handler
ImplementationProblemHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.ImplementationProblemHandler
IN - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerRunREST.PathNames
incrementRunCount() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
InDesc() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerInputREST.InDesc: Make a blank description of an input port.
InDesc(Input, UriInfo) - Constructor for class org.apache.taverna.server.master.rest.TavernaServerInputREST.InDesc: Make a description of the given input port.
Info() - Constructor for class org.apache.taverna.server.master.common.ProfileList.Info
infrastructure - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.RecordIdentityBlockType
InfrastructureType - Class in org.apache.taverna.server.usagerecord.xml.urf2: Open Grid Forum GFD.204 Usage Record type InfrastructureType
InfrastructureType() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf2.InfrastructureType
init(FilterConfig) - Method in class org.apache.taverna.server.master.utils.CallTimingFilter
init(String[]) - Static method in class org.apache.taverna.server.unixforker.Forker: Initialization code, which runs before the main loop starts processing.
initFactory() - Method in class org.apache.taverna.server.master.localworker.ForkRunFactory: Makes the subprocess that manufactures runs.
INITIAL_FILE_VARIANTS - Static variable in interface org.apache.taverna.server.master.api.ContentTypes: The baseline set of media types that we are willing to serve up files as.
initializeSecurityFromContext(SecurityContext) - Method in interface org.apache.taverna.server.master.interfaces.TavernaSecurityContext: Establish the security context from how the owning workflow run was created.
initializeSecurityFromContext(SecurityContext) - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate
initializeSecurityFromRESTContext(HttpHeaders) - Method in interface org.apache.taverna.server.master.interfaces.TavernaSecurityContext: Establish the security context from how the owning workflow run was created.
initializeSecurityFromRESTContext(HttpHeaders) - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate
initializeSecurityFromSOAPContext(MessageContext) - Method in interface org.apache.taverna.server.master.interfaces.TavernaSecurityContext: Establish the security context from how the owning workflow run was created.
initializeSecurityFromSOAPContext(MessageContext) - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate
initInteractionDetails(RemoteRunFactory) - Method in class org.apache.taverna.server.master.localworker.AbstractRemoteRunFactory
initObsoleteRESTSecurity(TavernaSecurityContext) - Method in interface org.apache.taverna.server.master.api.TavernaServerBean: The nastier parts of security initialisation in REST calls, which we want to go away.
initObsoleteRESTSecurity(TavernaSecurityContext) - Method in class org.apache.taverna.server.master.TavernaServer
initObsoleteSOAPSecurity(TavernaSecurityContext) - Method in interface org.apache.taverna.server.master.api.TavernaServerBean: The nastier parts of security initialisation in SOAP calls, which we want to go away.
initObsoleteSOAPSecurity(TavernaSecurityContext) - Method in class org.apache.taverna.server.master.TavernaServer
initRegistry() - Method in class org.apache.taverna.server.master.localworker.ForkRunFactory
initWorker(LocalWorker, String, byte[], File, File, Map<String, File>, Map<String, String>, Map<String, String>, File, File, char[], boolean, Map<String, String>, String, List<String>) - Method in interface org.apache.taverna.server.localworker.api.Worker: Fire up the workflow.
initWorker(LocalWorker, String, byte[], File, File, Map<String, File>, Map<String, String>, Map<String, String>, File, File, char[], boolean, Map<String, String>, String, List<String>) - Method in class org.apache.taverna.server.localworker.impl.WorkerCore: Fire up the workflow.
input - Variable in class org.apache.taverna.server.client.port.InputDescription
input - Variable in class org.apache.taverna.server.client.rest.TavernaRunInputs
input() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName: This represents how a Taverna Server workflow run's inputs looks to a RESTful API.
Input(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input: Create new instance using existing Client instance, and a base URI and any parameters
Input - Interface in org.apache.taverna.server.master.interfaces: This represents the assignment of inputs to input ports of the workflow.
input - Variable in class org.apache.taverna.server.master.rest.TavernaServerInputREST.InputsDescriptor: Where to find the details of inputs to particular ports (if set).
input - Variable in class org.apache.taverna.server.port_description.InputDescription
InputBean - Interface in org.apache.taverna.server.master.api: Description of properties supported by InputREST.
InputDescription - Class in org.apache.taverna.server.client.port: Java class for inputDescription complex type.
InputDescription() - Constructor for class org.apache.taverna.server.client.port.InputDescription
InputDescription - Class in org.apache.taverna.server.client.rest: Java class for InputDescription complex type.
InputDescription() - Constructor for class org.apache.taverna.server.client.rest.InputDescription
InputDescription - Class in org.apache.taverna.server.master.common: A description of the inputs to a workflow, described using JAXB.
InputDescription() - Constructor for class org.apache.taverna.server.master.common.InputDescription: Make a blank input description.
InputDescription(TavernaRun) - Constructor for class org.apache.taverna.server.master.common.InputDescription: Make an input description suitable for the given workflow run.
InputDescription - Class in org.apache.taverna.server.port_description: A description of the inputs of a workflow run, as they are currently known about.
InputDescription() - Constructor for class org.apache.taverna.server.port_description.InputDescription
InputDescription.File - Class in org.apache.taverna.server.client.rest: Java class for anonymous complex type.
InputDescription.InputPort - Class in org.apache.taverna.server.port_description
InputDescription.Port - Class in org.apache.taverna.server.master.common: The type of a single port description.
InputDescription.Reference - Class in org.apache.taverna.server.client.rest: Java class for anonymous complex type.
InputDescription.Value - Class in org.apache.taverna.server.client.rest: Java class for anonymous complex type.
inputName(String) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input
InputName(Client, URI, String) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.InputName: Create new instance using existing Client instance, and a base URI and any parameters
InputName(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.InputName: Create new instance using existing Client instance, and the URI from which the parameters will be extracted
inputOptions(String) - Method in interface org.apache.taverna.server.master.rest.TavernaServerInputREST: Get an outline of the operations supported.
InputPort - Class in org.apache.taverna.server.client.port: Java class for InputPort complex type.
InputPort() - Constructor for class org.apache.taverna.server.client.port.InputPort
InputPort() - Constructor for class org.apache.taverna.server.port_description.InputDescription.InputPort
inputs - Variable in class org.apache.taverna.server.client.rest.RunDescription
inputs - Variable in class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription: The location of the inputs.
InputsDescriptor() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerInputREST.InputsDescriptor: Make a blank description of the inputs.
InputsDescriptor(UriInfo, TavernaRun) - Constructor for class org.apache.taverna.server.master.rest.TavernaServerInputREST.InputsDescriptor: Make the description of the inputs.
InputStreamMessageHandler - Class in org.apache.taverna.server.master.rest.handler: Maps a stream from a client into a bounded ordinary input stream that the webapp can work with more easily.
InputStreamMessageHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.InputStreamMessageHandler
IntAdapter - Class in org.apache.taverna.server.port_description.utils: A type conversion utility for use with JAXB.
IntAdapter() - Constructor for class org.apache.taverna.server.port_description.utils.IntAdapter
interaction - Variable in class org.apache.taverna.server.client.rest.RunDescription
interaction() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName
Interaction(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Interaction: Create new instance using existing Client instance, and a base URI and any parameters
interaction - Variable in class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription: The location of the interaction feed.
interactionFeed - Variable in class org.apache.taverna.server.client.rest.ServerDescription
InteractionFeed - Class in org.apache.taverna.server.master: How to connect an interaction feed to the webapp.
InteractionFeed() - Constructor for class org.apache.taverna.server.master.InteractionFeed
interactionFeed - Variable in class org.apache.taverna.server.master.rest.TavernaServerREST.ServerDescription: Reference to the interaction feed for this server.
interactionFeedPath - Static variable in class org.apache.taverna.server.localworker.impl.TavernaRunManager
InteractionFeedREST - Interface in org.apache.taverna.server.master.rest: A very stripped down ATOM feed for the interaction service.
InteractionFeedSupport - Class in org.apache.taverna.server.master.interaction: Bean that supports interaction feeds.
InteractionFeedSupport() - Constructor for class org.apache.taverna.server.master.interaction.InteractionFeedSupport
interactionHost - Static variable in class org.apache.taverna.server.localworker.impl.TavernaRunManager
interactionPort - Static variable in class org.apache.taverna.server.localworker.impl.TavernaRunManager
interactionWebdavPath - Static variable in class org.apache.taverna.server.localworker.impl.TavernaRunManager
interactWithSudo(OutputStream) - Method in class org.apache.taverna.server.unixforker.Forker
InvalidCredentialException - Exception in org.apache.taverna.server.master.exceptions: An exception that is thrown to indicate that a credential-descriptor or trust-descriptor supplied as part of a credential or trust management operation is invalid.
InvalidCredentialException() - Constructor for exception org.apache.taverna.server.master.exceptions.InvalidCredentialException
InvalidCredentialException(String) - Constructor for exception org.apache.taverna.server.master.exceptions.InvalidCredentialException
InvalidCredentialException(String, Throwable) - Constructor for exception org.apache.taverna.server.master.exceptions.InvalidCredentialException
InvalidCredentialException(Throwable) - Constructor for exception org.apache.taverna.server.master.exceptions.InvalidCredentialException
InvalidCredentialHandler - Class in org.apache.taverna.server.master.rest.handler
InvalidCredentialHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.InvalidCredentialHandler
InvocationCounter - Class in org.apache.taverna.server.master.utils: This class is responsible for counting all invocations of publicly-exposed methods of the webapp.
InvocationCounter() - Constructor for class org.apache.taverna.server.master.utils.InvocationCounter
InvocationCounter.CallCounted - Annotation Type in org.apache.taverna.server.master.utils: Mark methods that should be counted by the invocation counter.
invokationCount - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
invokeCount() - Method in interface org.apache.taverna.server.master.admin.Admin: The property for the number of times the service methods have been invoked.
invokeCount() - Method in class org.apache.taverna.server.master.admin.AdminBean
isAccountNonExpired() - Method in class org.apache.taverna.server.master.identity.User
isAccountNonLocked() - Method in class org.apache.taverna.server.master.identity.User
isAdmin() - Method in class org.apache.taverna.server.master.identity.User
isAllowingRunsToStart() - Method in interface org.apache.taverna.server.master.factories.RunFactory: Check whether the factory is permitting runs to actually start operating.
isAllowingRunsToStart() - Method in interface org.apache.taverna.server.master.worker.FactoryBean
isAllowingRunsToStart() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
isAvailable() - Method in interface org.apache.taverna.server.master.interfaces.MessageDispatcher
isAvailable() - Method in class org.apache.taverna.server.master.notification.atom.EventDAO
isAvailable() - Method in class org.apache.taverna.server.master.notification.EmailDispatcher
isAvailable() - Method in class org.apache.taverna.server.master.notification.JabberDispatcher
isAvailable() - Method in class org.apache.taverna.server.master.notification.SMSDispatcher
isAvailable() - Method in class org.apache.taverna.server.master.notification.TwitterDispatcher
isCredentialsNonExpired() - Method in class org.apache.taverna.server.master.identity.User
isEmpty() - Method in class org.apache.taverna.server.master.FileConcatenation
isEnabled() - Method in class org.apache.taverna.server.master.identity.User
isFinished() - Method in class org.apache.taverna.server.master.worker.RunConnection
isPersistent() - Method in class org.apache.taverna.server.master.utils.JDOSupport: Has this class actually been configured with a persistence manager by Spring?
isPrimary() - Method in class org.apache.taverna.server.usagerecord.xml.urf2.HostnameType: Gets the value of the primary property.
isProvenanceGenerated() - Method in class org.apache.taverna.server.master.worker.RunConnection
isReadable(Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.EntryHandler
isReadable(Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.InputStreamMessageHandler
isReadable(Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.PermissionHandler
isReadable(Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.Scufl2DocumentHandler
isReadable(Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.T2FlowDocumentHandler
isReadable(Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.URIListHandler
isRunning() - Method in class org.apache.taverna.server.client.Run
isSendAllowed(String) - Method in class org.apache.taverna.server.master.notification.RateLimitedDispatcher: Test whether the rate limiter allows the given user to send a message.
issue() - Method in class org.apache.taverna.server.master.worker.PasswordIssuer: Issue a password.
issueNewPassword() - Method in class org.apache.taverna.server.master.worker.SecurityContextFactory
isUnlimitedStrength() - Method in class org.apache.taverna.server.master.utils.JCECheck
isWriteable(Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.EntryHandler
isWriteable(Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.FeedHandler
isWriteable(Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.FileConcatenationHandler
isWriteable(Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.FileMessageHandler
isWriteable(Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.FileSegmentHandler
isWriteable(Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.PermissionHandler
isWriteable(Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.Scufl2DocumentHandler
isWriteable(Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.T2FlowDocumentHandler
isWriteable(Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.URIListHandler
isWriteable(Class<?>, Type, Annotation[], MediaType) - Method in class org.apache.taverna.server.master.rest.handler.ZipStreamHandler
iterator() - Method in class org.apache.taverna.server.master.FileConcatenation

J

j - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.DSAKeyValueType
JabberDispatcher - Class in org.apache.taverna.server.master.notification: Send notifications by Jabber/XMPP.
JabberDispatcher() - Constructor for class org.apache.taverna.server.master.notification.JabberDispatcher
JAVA - Static variable in interface org.apache.taverna.server.master.common.version.Version
javaBinary - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
JAXBExceptionHandler - Class in org.apache.taverna.server.master.rest.handler
JAXBExceptionHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.JAXBExceptionHandler
JCECheck - Class in org.apache.taverna.server.master.utils: Trivial bean that checks for whether the JCE policy files that allow unlimited strength security are present, and warns in the log if not.
JCECheck() - Constructor for class org.apache.taverna.server.master.utils.JCECheck
JDOSupport<T> - Class in org.apache.taverna.server.master.utils: Simple support class that wraps up and provides access to the correct parts of JDO.
JDOSupport(Class<T>) - Constructor for class org.apache.taverna.server.master.utils.JDOSupport: Instantiate this class, supplying it a handle to the class that will be used to provide context for queries and accesses.
JDOSupport.PersistenceManagerBuilder - Class in org.apache.taverna.server.master.utils: Manages persistence managers in a way that doesn't cause problems when the web application is unloaded.
JDOSupport.TransactionAspect - Class in org.apache.taverna.server.master.utils: Manages integration of JDO transactions with Spring.
JDOSupport.WithinSingleTransaction - Annotation Type in org.apache.taverna.server.master.utils: Mark a method (of a subclass of JDOSupport) as having a transaction wrapped around it.
JMX_ROOT - Static variable in class org.apache.taverna.server.master.TavernaServer: The root of descriptions of the server in JMX.
JobIdentity - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type JobIdentity
JobIdentity() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.JobIdentity
jobIdentity - Variable in class org.apache.taverna.server.usagerecord.xml.urf.UsageRecordType
JobName - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type JobName
JobName() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.JobName
jobName - Variable in class org.apache.taverna.server.usagerecord.xml.urf.UsageRecordType
jobName - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType
jobUsageBlock - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecordType
JobUsageBlockType - Class in org.apache.taverna.server.usagerecord.xml.urf2: Open Grid Forum GFD.204 Usage Record type JobUsageBlockType
JobUsageBlockType() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType
JobUsageRecord - Class in org.apache.taverna.server.usagerecord: Open Grid Forum GFD.98 Usage Record
JobUsageRecord() - Constructor for class org.apache.taverna.server.usagerecord.JobUsageRecord: Create a new usage record with a random UUID as its identity.
JobUsageRecord(String) - Constructor for class org.apache.taverna.server.usagerecord.JobUsageRecord: Create a new usage record with the given name and a random UUID as its identity.
JobUsageRecord - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type JobUsageRecord
JobUsageRecord() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.JobUsageRecord

K

keyInfo - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureType
keyInfo - Variable in class org.apache.taverna.server.usagerecord.xml.urf.RecordIdentity
keyInfo - Variable in class org.apache.taverna.server.usagerecord.xml.urf.UserIdentity
KeyInfoType - Class in org.apache.taverna.server.usagerecord.xml.dsig: Java class for KeyInfoType complex type.
KeyInfoType() - Constructor for class org.apache.taverna.server.usagerecord.xml.dsig.KeyInfoType
keypair - Variable in class org.apache.taverna.server.client.rest.Credential
KeyPair() - Constructor for class org.apache.taverna.server.master.common.Credential.KeyPair
KeyPairCredential - Class in org.apache.taverna.server.client.generic: Java class for KeyPairCredential complex type.
KeyPairCredential() - Constructor for class org.apache.taverna.server.client.generic.KeyPairCredential
KEYSTORE_FILE - Static variable in class org.apache.taverna.server.localworker.api.Constants: The name of the file that will be the created keystore.
KEYSTORE_PASSWORD - Static variable in class org.apache.taverna.server.localworker.api.Constants: Password to use to encrypt security information.
KeyValueType - Class in org.apache.taverna.server.usagerecord.xml.dsig: Java class for KeyValueType complex type.
KeyValueType() - Constructor for class org.apache.taverna.server.usagerecord.xml.dsig.KeyValueType
kill() - Method in class org.apache.taverna.server.client.Run
killFactories() - Method in class org.apache.taverna.server.master.localworker.IdAwareForkRunFactory: Destroys the subprocess that manufactures runs.
killFactory() - Method in class org.apache.taverna.server.master.localworker.ForkRunFactory: Destroys the subprocess that manufactures runs.
killWorker() - Method in interface org.apache.taverna.server.localworker.api.Worker: Kills off the subprocess if it exists and is alive.
killWorker() - Method in class org.apache.taverna.server.localworker.impl.WorkerCore: Kills off the subprocess if it exists and is alive.

L

lastExitCode - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
lastExitCode() - Method in interface org.apache.taverna.server.master.admin.Admin: The property for the last exit code of the forker process.
lastExitCode() - Method in class org.apache.taverna.server.master.admin.AdminBean
lastExitCode() - Method in interface org.apache.taverna.server.master.localworker.IdAwareForkRunFactory.MetaFactory
lastStartupCheckCount() - Method in interface org.apache.taverna.server.master.localworker.IdAwareForkRunFactory.MetaFactory
launchSubprocess(ProcessBuilder) - Static method in class org.apache.taverna.server.master.localworker.AbstractRemoteRunFactory
LeafValue - Class in org.apache.taverna.server.client.port: Java class for LeafValue complex type.
LeafValue() - Constructor for class org.apache.taverna.server.client.port.LeafValue
LeafValue - Class in org.apache.taverna.server.port_description
LeafValue() - Constructor for class org.apache.taverna.server.port_description.LeafValue
length - Variable in class org.apache.taverna.server.client.port.ListValue
length - Variable in class org.apache.taverna.server.port_description.ListValue
link - Variable in class org.apache.taverna.server.master.common.DirEntryReference: A link to the entry.
link - Variable in class org.apache.taverna.server.master.common.RunReference: Where to get information about the run.
link - Variable in class org.apache.taverna.server.master.soap.DirEntry: A link to the entry.
LinkedPermissionDescription - Class in org.apache.taverna.server.client.rest: Java class for linkedPermissionDescription complex type.
LinkedPermissionDescription() - Constructor for class org.apache.taverna.server.client.rest.LinkedPermissionDescription
LinkedPermissionDescription() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.PermissionsDescription.LinkedPermissionDescription
list() - Method in class org.apache.taverna.server.client.Directory
list - Variable in class org.apache.taverna.server.client.port.OutputPort
listAvailableDispatchers() - Method in class org.apache.taverna.server.master.notification.NotificationEngine
listCredentials() - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST
listDelimiter - Variable in class org.apache.taverna.server.client.rest.InputDescription
LISTEN - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerRunREST.PathNames
listener - Variable in class org.apache.taverna.server.client.rest.Listeners
listener - Variable in class org.apache.taverna.server.client.rest.RunDescription.Listeners
Listener - Interface in org.apache.taverna.server.master.interfaces: An event listener that can be attached to a TavernaRun.
listener - Variable in class org.apache.taverna.server.master.rest.TavernaServerListenersREST.Listeners: The listeners for a workflow run.
listener - Variable in class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription.ListenerList: The references to the individual listeners.
ListenerDefinition - Class in org.apache.taverna.server.client.rest: Java class for ListenerDefinition complex type.
ListenerDefinition() - Constructor for class org.apache.taverna.server.client.rest.ListenerDefinition
ListenerDefinition - Class in org.apache.taverna.server.master.rest: Description of what sort of event listener to create and attach to a workflow run.
ListenerDefinition() - Constructor for class org.apache.taverna.server.master.rest.ListenerDefinition
ListenerDescription - Class in org.apache.taverna.server.client.rest: Java class for ListenerDescription complex type.
ListenerDescription() - Constructor for class org.apache.taverna.server.client.rest.ListenerDescription
ListenerDescription() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerListenersREST.ListenerDescription: Make a blank listener description.
ListenerDescription(Listener, UriBuilder) - Constructor for class org.apache.taverna.server.master.rest.TavernaServerListenersREST.ListenerDescription: Make a listener description that characterizes the given listener.
ListenerDescription.Properties - Class in org.apache.taverna.server.client.rest: Java class for anonymous complex type.
ListenerFactory - Interface in org.apache.taverna.server.master.factories: How to make event listeners of various types that are attached to a workflow instance.
ListenerList() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription.ListenerList: An empty description of listeners.
listenerOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerListenersREST.TavernaServerListenerREST: Get an outline of the operations supported.
ListenerPropertyBean - Interface in org.apache.taverna.server.master.api: Description of properties supported by ListenerPropertyREST.
Listeners - Class in org.apache.taverna.server.client.rest: Java class for anonymous complex type.
Listeners() - Constructor for class org.apache.taverna.server.client.rest.Listeners
listeners - Variable in class org.apache.taverna.server.client.rest.RunDescription
Listeners() - Constructor for class org.apache.taverna.server.client.rest.RunDescription.Listeners
listeners() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName: This represents all the event listeners attached to a workflow run.
Listeners(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners: Create new instance using existing Client instance, and a base URI and any parameters
Listeners() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerListenersREST.Listeners: Make a blank description of listeners.
Listeners(List<TavernaServerListenersREST.ListenerDescription>, UriBuilder) - Constructor for class org.apache.taverna.server.master.rest.TavernaServerListenersREST.Listeners: Make a description of the whole group out of the given list of listener descriptions.
listeners - Variable in class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription: The list of listeners.
ListenersBean - Interface in org.apache.taverna.server.master.api: Description of properties supported by ListenersREST.
listenersOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerListenersREST: Get an outline of the operations supported.
listPermittedWorkflowURIs(UsernamePrincipal) - Method in interface org.apache.taverna.server.master.interfaces.Policy: Get the URIs of the workflows that the given user may execute.
listProperties() - Method in class org.apache.taverna.server.localworker.impl.WorkerCore
listProperties() - Method in interface org.apache.taverna.server.localworker.remote.RemoteListener
listProperties() - Method in interface org.apache.taverna.server.master.interfaces.Listener
listRunNames() - Method in class org.apache.taverna.server.master.worker.RunDatabase
listRunNames() - Method in class org.apache.taverna.server.master.worker.RunDatabaseDAO
listRunNames() - Method in interface org.apache.taverna.server.master.worker.RunDBSupport: Get a list of all the run names.
listRunPermissions(String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the list of permissions associated with a workflow run.
listRunPermissions(String) - Method in class org.apache.taverna.server.master.TavernaServer
listRuns(UsernamePrincipal, Policy) - Method in interface org.apache.taverna.server.master.interfaces.RunStore: List the runs that a particular user may access.
listRuns() - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Get the list of existing runs owned by the user.
listRuns() - Method in class org.apache.taverna.server.master.TavernaServer
listRuns(UsernamePrincipal, Policy) - Method in class org.apache.taverna.server.master.worker.RunDatabase
listRuns(UsernamePrincipal, Policy) - Method in class org.apache.taverna.server.master.worker.RunDatabaseDAO: Get the runs that a user can read things from.
listTrusted() - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST
listUsers() - Method in class org.apache.taverna.server.master.identity.UserStore: Get a list of all the users in the database.
listUsersRuns(UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerREST: Produces a description of the list of runs.
listUsersRuns(UriInfo) - Method in class org.apache.taverna.server.master.TavernaServer
ListValue - Class in org.apache.taverna.server.client.port: Java class for ListValue complex type.
ListValue() - Constructor for class org.apache.taverna.server.client.port.ListValue
ListValue - Class in org.apache.taverna.server.port_description
ListValue() - Constructor for class org.apache.taverna.server.port_description.ListValue
load() - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
loadedCertificates - Variable in class org.apache.taverna.server.master.common.Trust: The collection of certificates loaded from the specified file.
loadedKey - Variable in class org.apache.taverna.server.master.common.Credential: The key extracted from the keystore.
loadedTrustChain - Variable in class org.apache.taverna.server.master.common.Credential: The trust chain of the key extracted from the keystore.
loadUserByUsername(String) - Method in class org.apache.taverna.server.master.identity.UserStore.CachedUserStore
loadUserByUsername(String) - Method in class org.apache.taverna.server.master.identity.UserStore
localGroupId - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.SubjectIdentityBlockType
LOCALHOST - Static variable in class org.apache.taverna.server.localworker.api.Constants: The default hostname to require in secure mode.
LocalIdentityMapper - Interface in org.apache.taverna.server.master.interfaces: This interface describes how to map from the identity understood by the webapp to the identity understood by the local execution system.
localJobId - Variable in class org.apache.taverna.server.usagerecord.xml.urf.JobIdentity
localJobId - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType
localUserId - Variable in class org.apache.taverna.server.master.admin.Admin.UserDesc
localUserId - Variable in class org.apache.taverna.server.usagerecord.xml.urf.UserIdentity
localUserId - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.SubjectIdentityBlockType
localVirtualMachineId - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType
LocalWorker - Class in org.apache.taverna.server.localworker.impl: This class implements one side of the connection between the Taverna Server master server and this process.
LocalWorker(String, byte[], UsageRecordReceiver, UUID, Map<String, String>, List<String>, WorkerFactory) - Constructor for class org.apache.taverna.server.localworker.impl.LocalWorker
LocalWorkerFactory - Class in org.apache.taverna.server.master.localworker: Provider of the configuration of the "localworker.factory" bean, which is sufficiently complex to be too hard to manufacture directly from the XML configuration.
LocalWorkerFactory() - Constructor for class org.apache.taverna.server.master.localworker.LocalWorkerFactory
LocalWorkerState - Class in org.apache.taverna.server.master.localworker: The persistent state of a local worker factory.
LocalWorkerState() - Constructor for class org.apache.taverna.server.master.localworker.LocalWorkerState
Location - Class in org.apache.taverna.server.client.generic: Java class for Location complex type.
Location() - Constructor for class org.apache.taverna.server.client.generic.Location
location - Variable in class org.apache.taverna.server.master.rest.TavernaServerListenersREST.ListenerDescription: Where this listener is located.
log - Variable in class org.apache.taverna.server.client.rest.RunDescription
log() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName
Log(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Log: Create new instance using existing Client instance, and a base URI and any parameters
log - Variable in class org.apache.taverna.server.master.notification.RateLimitedDispatcher: Pre-configured logger.
LOG - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerRunREST.PathNames
log - Variable in class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription: The log from the run.
log - Variable in class org.apache.taverna.server.master.TavernaServer: The logger for the server framework.
log - Static variable in class org.apache.taverna.server.master.utils.WSDLHeadOptionsInterceptor
log - Variable in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
logConfig() - Method in class org.apache.taverna.server.master.identity.WorkflowInternalAuthProvider
logFaults - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
logger - Variable in class org.apache.taverna.server.master.identity.StrippedDownAuthProvider
LoggingDerbyAdapter - Class in org.apache.taverna.server.master.utils: Evil hack to allow logging of the DDL spat out to Derby.
LoggingDerbyAdapter(DatabaseMetaData) - Constructor for class org.apache.taverna.server.master.utils.LoggingDerbyAdapter: Creates an Apache Derby adapter based on the given metadata which logs the DDL it creates.
logOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Get an outline of the operations supported.
logWorkflows - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription

M

MachineName - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type MachineName
MachineName() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.MachineName
machineName - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType
machineName - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType
main(String[]) - Static method in class org.apache.taverna.server.localworker.impl.TavernaRunManager
main - Variable in class org.apache.taverna.server.master.common.ProfileList.Info: Whether this is the main profile.
main(String...) - Static method in class org.apache.taverna.server.rmidaemon.Registry: Run a registry.
main(String...) - Static method in class org.apache.taverna.server.unixforker.Forker: The main code for this class, which turns this into an executable program.
mainLoopBody(String[]) - Static method in class org.apache.taverna.server.unixforker.Forker: The body of the main loop of this program.
make(byte[], String, UsageRecordReceiver, UUID) - Method in class org.apache.taverna.server.localworker.impl.TavernaRunManager
make(byte[], String, UsageRecordReceiver, UUID) - Method in interface org.apache.taverna.server.localworker.remote.RemoteRunFactory: Makes a workflow run that will process a particular workflow document.
make(String) - Method in interface org.apache.taverna.server.master.localworker.IdAwareForkRunFactory.MetaFactory: Make a factory for the given user.
makeChanges(RemoteRunDelegate) - Method in class org.apache.taverna.server.master.worker.RunConnection: Flush changes from a remote run delegate to the database.
makeCompletionMessage(String, RemoteRunDelegate, int) - Method in interface org.apache.taverna.server.master.worker.CompletionNotifier: Called to get the content of a message that a workflow run has finished.
makeCompletionMessage(String, RemoteRunDelegate, int) - Method in class org.apache.taverna.server.master.worker.SimpleFormattedCompletionNotifier
makeCompletionMessage(String, RemoteRunDelegate, int) - Method in class org.apache.taverna.server.master.worker.VelocityCompletionNotifier
MakeDirectory - Class in org.apache.taverna.server.client.rest: Java class for MakeDirectory complex type.
MakeDirectory() - Constructor for class org.apache.taverna.server.client.rest.MakeDirectory
MakeDirectory() - Constructor for class org.apache.taverna.server.master.rest.MakeOrUpdateDirEntry.MakeDirectory
makeDirectoryOrUpdateFile(List<PathSegment>, MakeOrUpdateDirEntry, UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerDirectoryREST: Creates a directory in the filesystem beneath the working directory of the workflow run, or creates or updates a file's contents, where that file is in or below the working directory of a workflow run.
makeEmptyFile(String) - Method in class org.apache.taverna.server.localworker.impl.DirectoryDelegate
makeEmptyFile(String) - Method in interface org.apache.taverna.server.localworker.remote.RemoteDirectory: Creates an empty file in this directory.
makeEmptyFile(Principal, String) - Method in interface org.apache.taverna.server.master.interfaces.Directory: Creates an empty file in this directory.
makeInput(String) - Method in class org.apache.taverna.server.localworker.impl.LocalWorker
makeInput(String) - Method in interface org.apache.taverna.server.localworker.remote.RemoteSingleRun: Create an input assignment.
makeInput(String) - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun: Create an input assignment.
makeInput(String) - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
makeInputDescriptor(TavernaRun, UriInfo) - Method in class org.apache.taverna.server.master.ContentsDescriptorBuilder: Constructs input descriptions.
makeInstance() - Method in interface org.apache.taverna.server.localworker.api.WorkerFactory: Create an instance of the low-level worker class.
makeInstance() - Method in class org.apache.taverna.server.localworker.impl.TavernaRunManager
makeListener(String, String) - Method in class org.apache.taverna.server.localworker.impl.LocalWorker
makeListener(String, String) - Method in interface org.apache.taverna.server.localworker.remote.RemoteSingleRun: Create a listener that can be attached to this run.
makeListener(TavernaRun, String, String) - Method in interface org.apache.taverna.server.master.factories.ListenerFactory: Make an event listener.
makeListener(TavernaRun, String, String) - Method in class org.apache.taverna.server.master.localworker.AbstractRemoteRunFactory
makeListener(TavernaRun, String, String) - Method in class org.apache.taverna.server.master.TavernaServerSupport: Construct a listener attached to the given run.
makeListener(String, String) - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate: Attach a listener to a workflow run and return its local delegate.
makeMessageSubject(String, RemoteRunDelegate, int) - Method in interface org.apache.taverna.server.master.worker.CompletionNotifier: Called to get the subject of the message to dispatch.
makeMessageSubject(String, RemoteRunDelegate, int) - Method in class org.apache.taverna.server.master.worker.SimpleFormattedCompletionNotifier
makeMessageSubject(String, RemoteRunDelegate, int) - Method in class org.apache.taverna.server.master.worker.VelocityCompletionNotifier
MakeOrUpdateDirEntry - Class in org.apache.taverna.server.master.rest: The input to the REST interface for making directories and files, and uploading file contents.
MakeOrUpdateDirEntry() - Constructor for class org.apache.taverna.server.master.rest.MakeOrUpdateDirEntry
MakeOrUpdateDirEntry.MakeDirectory - Class in org.apache.taverna.server.master.rest: Create a directory, described with JAXB.
MakeOrUpdateDirEntry.SetFileContents - Class in org.apache.taverna.server.master.rest: Create a file or set its contents, described with JAXB.
makeOutputDescriptor(TavernaRun, UriInfo) - Method in class org.apache.taverna.server.master.ContentsDescriptorBuilder: Construct a description of the outputs of a workflow run.
makePermission(TavernaServerSecurityREST.PermissionDescription, UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Manufacture a permission setting for a previously-unknown user.
makeRunDirectory(String, DirEntry, String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Make a new empty directory beneath an existing one, which must be the run's working directory or a directory beneath it.
makeRunDirectory(String, DirEntry, String) - Method in class org.apache.taverna.server.master.TavernaServer
makeRunFile(String, DirEntry, String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Make a new empty file in an existing directory, which may be the run's working directory or any directory beneath it.
makeRunFile(String, DirEntry, String) - Method in class org.apache.taverna.server.master.TavernaServer
makeRunInterface() - Method in class org.apache.taverna.server.master.TavernaServer: Construct a RESTful interface to a run.
makeSubdirectory(String) - Method in class org.apache.taverna.server.localworker.impl.DirectoryDelegate
makeSubdirectory(String) - Method in interface org.apache.taverna.server.localworker.remote.RemoteDirectory: Creates a sub-directory of this directory.
makeSubdirectory(Principal, String) - Method in interface org.apache.taverna.server.master.interfaces.Directory: Creates a sub-directory of this directory.
makeURReciver(UsernamePrincipal) - Method in class org.apache.taverna.server.master.localworker.AbstractRemoteRunFactory: Make a Remote object that can act as a consumer for usage records.
ManagementModel - Interface in org.apache.taverna.server.master.api: The model of the webapp's state Java Bean.
ManifestType - Class in org.apache.taverna.server.usagerecord.xml.dsig: Java class for ManifestType complex type.
ManifestType() - Constructor for class org.apache.taverna.server.usagerecord.xml.dsig.ManifestType
markFinished(Set<String>) - Method in class org.apache.taverna.server.master.worker.RunDatabaseDAO
marshal() - Method in class org.apache.taverna.server.master.common.Workflow: Convert to marshalled form.
marshal(Integer) - Method in class org.apache.taverna.server.port_description.utils.IntAdapter
marshal() - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
MAX_MESSAGE_LENGTH - Static variable in class org.apache.taverna.server.master.notification.TwitterDispatcher
Memory - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type Memory
Memory() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.Memory
memoryClass - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType
memoryResourceCapacityAllocated - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType
memoryResourceCapacityRequested - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType
memoryResourceCapacityUsed - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType
memoryUsageBlock - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecordType
MemoryUsageBlockType - Class in org.apache.taverna.server.usagerecord.xml.urf2: Open Grid Forum GFD.204 Usage Record type MemoryUsageBlockType
MemoryUsageBlockType() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType
MessageDispatcher - Interface in org.apache.taverna.server.master.interfaces: The interface supported by all notification message dispatchers.
metric - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Disk
metric - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Memory
metric - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Network
metric - Variable in class org.apache.taverna.server.usagerecord.xml.urf.NodeCount
metric - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Processors
metric - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Swap
mimeType - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectType
modulus - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.RSAKeyValueType

N

name - Variable in class org.apache.taverna.server.client.generic.DirectoryEntry
name - Variable in class org.apache.taverna.server.client.port.Port
name - Variable in class org.apache.taverna.server.client.rest.FilesystemCreationOperation
name - Variable in class org.apache.taverna.server.client.rest.InputDescription
name - Variable in class org.apache.taverna.server.client.rest.ListenerDescription
name - Variable in class org.apache.taverna.server.client.rest.PropertyDescription
name - Variable in class org.apache.taverna.server.client.rest.RunDescription
name(String) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners: This represents a single event listener attached to a workflow run.
Name(Client, URI, String) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name: Create new instance using existing Client instance, and a base URI and any parameters
Name(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name: Create new instance using existing Client instance, and the URI from which the parameters will be extracted
name() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName
Name(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Name: Create new instance using existing Client instance, and a base URI and any parameters
name - Variable in class org.apache.taverna.server.master.common.DirEntryReference: The last, user-displayable part of the name.
name - Variable in class org.apache.taverna.server.master.common.InputDescription.Port: The name of this port.
name - Variable in class org.apache.taverna.server.master.common.ProfileList.Info
name - Variable in class org.apache.taverna.server.master.common.RunReference: The name of the run.
name - Variable in class org.apache.taverna.server.master.rest.MakeOrUpdateDirEntry: The name of the file or directory that the operation applies to.
name - Variable in class org.apache.taverna.server.master.rest.TavernaServerInputREST.InDesc: The name of the port.
name - Variable in class org.apache.taverna.server.master.rest.TavernaServerListenersREST.ListenerDescription: The (arbitrary) name of the event listener.
NAME - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerRunREST.PathNames
name - Variable in class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription: The name of the run.
name - Variable in class org.apache.taverna.server.master.soap.DirEntry
name - Variable in class org.apache.taverna.server.master.soap.FileContents
name - Variable in class org.apache.taverna.server.master.soap.ZippedDirectory
name - Variable in class org.apache.taverna.server.port_description.AbstractPort
namedQuery(String) - Method in class org.apache.taverna.server.master.utils.JDOSupport: Get an instance of a named query attached to the context class (as an annotation).
NameIDMapper - Class in org.apache.taverna.server.master.identity: A trivial identity mapper that just uses the name out of the Principal, or uses a regular expression to extract it from the string representation of the principal.
NameIDMapper() - Constructor for class org.apache.taverna.server.master.identity.NameIDMapper
nameOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Produce the workflow name HTTP operations.
Namespaces - Interface in org.apache.taverna.server.master.common: A convenient place to keep the names of URIs so that they can be got right once.
Namespaces - Interface in org.apache.taverna.server.port_description
NegotiationFailedException(String, List<Variant>) - Constructor for exception org.apache.taverna.server.master.rest.TavernaServerDirectoryREST.NegotiationFailedException
NegotiationFailedHandler - Class in org.apache.taverna.server.master.rest.handler
NegotiationFailedHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.NegotiationFailedHandler
Network - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type Network
Network() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.Network
networkClass - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkUsageBlockType
NetworkClassType - Class in org.apache.taverna.server.usagerecord.xml.urf2: Open Grid Forum GFD.204 Usage Record type NetworkClassType
NetworkClassType() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf2.NetworkClassType
networkInboundUsed - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkUsageBlockType
NetworkInboundUsedType - Class in org.apache.taverna.server.usagerecord.xml.urf2: Open Grid Forum GFD.204 Usage Record type NetworkInboundUsedType
NetworkInboundUsedType() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf2.NetworkInboundUsedType
networkOutboundUsed - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkUsageBlockType
NetworkOutboundUsedType - Class in org.apache.taverna.server.usagerecord.xml.urf2: Open Grid Forum GFD.204 Usage Record type NetworkOutboundUsedType
NetworkOutboundUsedType() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf2.NetworkOutboundUsedType
networkResourceBandwidth - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkClassType
networkUsageBlock - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecordType
NetworkUsageBlockType - Class in org.apache.taverna.server.usagerecord.xml.urf2: Open Grid Forum GFD.204 Usage Record type NetworkUsageBlockType
NetworkUsageBlockType() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf2.NetworkUsageBlockType
newInstance(DirectoryEntry) - Static method in class org.apache.taverna.server.master.common.DirEntryReference: Return the directory entry reference instance subclass suitable for the given directory entry.
newInstance(UriBuilder, DirectoryEntry) - Static method in class org.apache.taverna.server.master.common.DirEntryReference: Return the directory entry reference instance subclass suitable for the given directory entry.
NoCreateException - Exception in org.apache.taverna.server.master.exceptions: Exception that is thrown to indicate that the user is not permitted to create something.
NoCreateException() - Constructor for exception org.apache.taverna.server.master.exceptions.NoCreateException
NoCreateException(String) - Constructor for exception org.apache.taverna.server.master.exceptions.NoCreateException
NoCreateException(String, Throwable) - Constructor for exception org.apache.taverna.server.master.exceptions.NoCreateException
NoCreateHandler - Class in org.apache.taverna.server.master.rest.handler
NoCreateHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.NoCreateHandler
NoCredentialException - Exception in org.apache.taverna.server.master.exceptions: Exception that indicates the absence of an expected credential.
NoCredentialException() - Constructor for exception org.apache.taverna.server.master.exceptions.NoCredentialException
NoCredentialHandler - Class in org.apache.taverna.server.master.rest.handler
NoCredentialHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.NoCredentialHandler
NodeCount - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type NodeCount
NodeCount() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.NodeCount
nodeCount - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType
NoDestroyException - Exception in org.apache.taverna.server.master.exceptions: Exception that is thrown to indicate that the user is not permitted to destroy something.
NoDestroyException() - Constructor for exception org.apache.taverna.server.master.exceptions.NoDestroyException
NoDestroyHandler - Class in org.apache.taverna.server.master.rest.handler
NoDestroyHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.NoDestroyHandler
NoDirectoryEntryException - Exception in org.apache.taverna.server.master.exceptions: Indicates that the file or directory name was not recognized.
NoDirectoryEntryException(String) - Constructor for exception org.apache.taverna.server.master.exceptions.NoDirectoryEntryException
NoDirectoryEntryException(String, Exception) - Constructor for exception org.apache.taverna.server.master.exceptions.NoDirectoryEntryException
NoDirectoryEntryHandler - Class in org.apache.taverna.server.master.rest.handler
NoDirectoryEntryHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.NoDirectoryEntryHandler
NoListenerException - Exception in org.apache.taverna.server.master.exceptions: Exception thrown to indicate that no listener by that name exists, or that some other problem with listeners has occurred.
NoListenerException() - Constructor for exception org.apache.taverna.server.master.exceptions.NoListenerException
NoListenerException(String) - Constructor for exception org.apache.taverna.server.master.exceptions.NoListenerException
NoListenerException(String, Throwable) - Constructor for exception org.apache.taverna.server.master.exceptions.NoListenerException
NoListenerHandler - Class in org.apache.taverna.server.master.rest.handler
NoListenerHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.NoListenerHandler
NotificationEngine - Class in org.apache.taverna.server.master.notification: A common object for handling dispatch of event-driven messages.
NotificationEngine() - Constructor for class org.apache.taverna.server.master.notification.NotificationEngine
NotificationEngine.Message - Interface in org.apache.taverna.server.master.notification
notifier - Variable in class org.apache.taverna.server.client.rest.EnabledNotificationFabrics
notifier - Variable in class org.apache.taverna.server.master.rest.TavernaServerREST.EnabledNotificationFabrics: The notification fabrics that are enabled.
NOTIFY_MESSAGE_FORMAT - Static variable in interface org.apache.taverna.server.master.defaults.Default: The notification message format to use if none is configured.
NotOwnerException - Exception in org.apache.taverna.server.master.exceptions: An exception thrown when an operation is attempted which only the owner is permitted to do.
NotOwnerException() - Constructor for exception org.apache.taverna.server.master.exceptions.NotOwnerException
NotOwnerHandler - Class in org.apache.taverna.server.master.rest.handler
NotOwnerHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.NotOwnerHandler
NoUpdateException - Exception in org.apache.taverna.server.master.exceptions: Exception that is thrown to indicate that the user is not permitted to update something.
NoUpdateException() - Constructor for exception org.apache.taverna.server.master.exceptions.NoUpdateException
NoUpdateException(String) - Constructor for exception org.apache.taverna.server.master.exceptions.NoUpdateException
NoUpdateException(String, Throwable) - Constructor for exception org.apache.taverna.server.master.exceptions.NoUpdateException
NoUpdateHandler - Class in org.apache.taverna.server.master.rest.handler
NoUpdateHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.NoUpdateHandler

O

object - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureType
ObjectFactory - Class in org.apache.taverna.server.client.generic: This object contains factory methods for each Java content interface and Java element interface generated in the org.apache.taverna.server.client.generic package.
ObjectFactory() - Constructor for class org.apache.taverna.server.client.generic.ObjectFactory: Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.apache.taverna.server.client.generic
ObjectFactory - Class in org.apache.taverna.server.client.port: This object contains factory methods for each Java content interface and Java element interface generated in the org.apache.taverna.server.client.port package.
ObjectFactory() - Constructor for class org.apache.taverna.server.client.port.ObjectFactory: Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.apache.taverna.server.client.port
ObjectFactory - Class in org.apache.taverna.server.client.rest: This object contains factory methods for each Java content interface and Java element interface generated in the org.apache.taverna.server.client.rest package.
ObjectFactory() - Constructor for class org.apache.taverna.server.client.rest.ObjectFactory: Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.apache.taverna.server.client.rest
ObjectFactory - Class in org.apache.taverna.server.usagerecord.xml.dsig: This object contains factory methods for each Java content interface and Java element interface generated in the org.apache.taverna.server.usagerecord.xml.dsig package.
ObjectFactory() - Constructor for class org.apache.taverna.server.usagerecord.xml.dsig.ObjectFactory: Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.apache.taverna.server.usagerecord.xml.dsig
ObjectFactory - Class in org.apache.taverna.server.usagerecord.xml.urf: This object contains factory methods for each Java content interface and Java element interface generated in the org.apache.taverna.server.usagerecord.xml.urf package.
ObjectFactory() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.ObjectFactory: Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.apache.taverna.server.usagerecord.xml.urf
ObjectFactory - Class in org.apache.taverna.server.usagerecord.xml.urf2: This object contains factory methods for each Java content interface and Java element interface generated in the org.apache.taverna.server.usagerecord.xml.urf2 package.
ObjectFactory() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf2.ObjectFactory: Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.apache.taverna.server.usagerecord.xml.urf2
ObjectType - Class in org.apache.taverna.server.usagerecord.xml.dsig: Java class for ObjectType complex type.
ObjectType() - Constructor for class org.apache.taverna.server.usagerecord.xml.dsig.ObjectType
ONE_CRED - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST.PathNames
ONE_INPUT - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerInputREST.PathNames
ONE_PERM - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST.PathNames
ONE_TRUST - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST.PathNames
OneListenerBean - Interface in org.apache.taverna.server.master.api: Description of properties supported by InputREST.
OneShotThread - Class in org.apache.taverna.server.master.utils
OneShotThread(String, Runnable) - Constructor for class org.apache.taverna.server.master.utils.OneShotThread
operatingCount - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
operatingCount() - Method in interface org.apache.taverna.server.master.admin.Admin: The property for the number of runs that are currently running.
operatingCount() - Method in class org.apache.taverna.server.master.admin.AdminBean
operatingCount() - Method in class org.apache.taverna.server.master.localworker.ForkRunFactory
operatingCount() - Method in class org.apache.taverna.server.master.localworker.IdAwareForkRunFactory
operatingCount() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration: Count the number of operating runs.
operatingLimit - Variable in class org.apache.taverna.server.client.rest.PolicyDescription
operatingLimit() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy
OperatingLimit(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.OperatingLimit: Create new instance using existing Client instance, and a base URI and any parameters
operatingLimit - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
operatingLimit - Variable in class org.apache.taverna.server.master.rest.TavernaServerREST.PolicyView.PolicyDescription: Where to go to find out about the maximum number of operating runs.
opt(String...) - Static method in class org.apache.taverna.server.master.utils.RestUtils: Generate a response to an HTTP OPTIONS request.
options(List<PathSegment>) - Method in interface org.apache.taverna.server.master.rest.TavernaServerDirectoryREST: Get an outline of the operations supported.
options() - Method in interface org.apache.taverna.server.master.rest.TavernaServerInputREST: Get an outline of the operations supported.
options() - Method in interface org.apache.taverna.server.master.rest.TavernaServerListenersREST.Property: Get an outline of the operations supported.
optionsAllowNew() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsAllowNew() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsAsJson(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path2: Produces the description of the files/directories' baclava operations.
optionsAsJson(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path2: Produces the description of the files/directories' baclava operations.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root: Produces the description of the service.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root: Produces the description of the service.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Runs: Produces the description of the operations on the collection of runs.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Runs: Produces the description of the operations on the collection of runs.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.CreateTime: Produces the description of the run create time.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.CreateTime: Produces the description of the run create time.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Expiry: Produces the description of the run expiry.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Expiry: Produces the description of the run expiry.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.FinishTime: Produces the description of the run finish time.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.FinishTime: Produces the description of the run finish time.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.GenerateProvenance: Whether to create the run bundle for the workflow run.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.GenerateProvenance: Whether to create the run bundle for the workflow run.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.Baclava: Produces the description of the inputs' baclava operations.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.Baclava: Produces the description of the inputs' baclava operations.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.Expected: Produces the description of the expected inputs' operations.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.Expected: Produces the description of the expected inputs' operations.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.InputName: Produces the description of the one input's operations.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.InputName: Produces the description of the one input's operations.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input: Produces the description of one run's inputs' operations.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input: Produces the description of one run's inputs' operations.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Interaction.Id: Describes what HTTP operations are supported on an entry.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Interaction.Id: Describes what HTTP operations are supported on an entry.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Interaction: Describes what HTTP operations are supported on the feed.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Interaction: Describes what HTTP operations are supported on the feed.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name.Configuration: Produces the description of one run listener's configuration's operations.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name.Configuration: Produces the description of one run listener's configuration's operations.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name: Produces the description of one run listener's operations.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name: Produces the description of one run listener's operations.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name.Properties: Produces the description of one run listener's properties' operations.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name.Properties: Produces the description of one run listener's properties' operations.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name.PropertiesPropertyName: Produces the description of one run listener's property's operations.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name.PropertiesPropertyName: Produces the description of one run listener's property's operations.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners: Produces the description of the run listeners' operations.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners: Produces the description of the run listeners' operations.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Log: Return the log for the workflow run.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Log: Return the log for the workflow run.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Name: Produces the description of the operations on the run's descriptive name.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Name: Produces the description of the operations on the run's descriptive name.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName: Produces the description of the run.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName: Produces the description of the run.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Output: Produces the description of the run output.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Output: Produces the description of the run output.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.RunBundle: Return the run bundle for the workflow run.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.RunBundle: Return the run bundle for the workflow run.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Credentials: Produces the description of the run credentials' operations.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Credentials: Produces the description of the run credentials' operations.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.CredentialsId: Produces the description of one run credential's operations.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.CredentialsId: Produces the description of one run credential's operations.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security: Produces the description of the run security.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security: Produces the description of the run security.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Owner: Produces the description of the run owner.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Owner: Produces the description of the run owner.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Permissions: Produces the description of the run permissions' operations.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Permissions: Produces the description of the run permissions' operations.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.PermissionsId: Produces the description of one run permission's operations.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.PermissionsId: Produces the description of one run permission's operations.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Trusts: Produces the description of the run trusted certificates' operations.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Trusts: Produces the description of the run trusted certificates' operations.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.TrustsId: Produces the description of one run trusted certificate's operations.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.TrustsId: Produces the description of one run trusted certificate's operations.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.StartTime: Produces the description of the run start time.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.StartTime: Produces the description of the run start time.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Status: Produces the description of the run status.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Status: Produces the description of the run status.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Stderr: Return the stderr for the workflow run.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Stderr: Return the stderr for the workflow run.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Stdout: Return the stdout for the workflow run.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Stdout: Return the stdout for the workflow run.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Usage: Return the usage record for the workflow run.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Usage: Return the usage record for the workflow run.
optionsAsOctetStream(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Workflow: Produces the description of the run workflow.
optionsAsOctetStream(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Workflow: Produces the description of the run workflow.
optionsAsXml(GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path2: Produces the description of the files/directories' baclava operations.
optionsAsXml(Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path2: Produces the description of the files/directories' baclava operations.
optionsCurrentRuns() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsCurrentRuns() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsDefaultLifetime() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsDefaultLifetime() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsExecuteWorkflowScript() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsExecuteWorkflowScript() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsExtraArguments() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsExtraArguments() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsFactoryProcessMapping() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsFactoryProcessMapping() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsGenerateProvenance() - Method in interface org.apache.taverna.server.master.admin.Admin: Do we turn on the generate provenance option by default?
optionsGenerateProvenance() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsInvokationCount() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsInvokationCount() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsJavaBinary() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsJavaBinary() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsLastExitCode() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsLastExitCode() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsLogFaults() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsLogFaults() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsLogWorkflows() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsLogWorkflows() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsOperatingCount() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsOperatingCount() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsOperatingLimit() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsOperatingLimit() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsPermittedWorkflowURIs() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsPermittedWorkflowURIs() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsRegistrationPollMillis() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsRegistrationPollMillis() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsRegistrationWaitSeconds() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsRegistrationWaitSeconds() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsRegistryHost() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsRegistryHost() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsRegistryJar() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsRegistryJar() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsRegistryPort() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsRegistryPort() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsRoot() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsRoot() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsRunasPasswordFile() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsRunasPasswordFile() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsRunCount() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsRunCount() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsRunLimit() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsRunLimit() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsServerForkerJar() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsServerForkerJar() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsServerWorkerJar() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsServerWorkerJar() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsStartupTime() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsStartupTime() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsURFile() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsURFile() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsUsageRecords() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsUsageRecords() - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsUser(String) - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsUser(String) - Method in class org.apache.taverna.server.master.admin.AdminBean
optionsUsers() - Method in interface org.apache.taverna.server.master.admin.Admin: What HTTP methods may we use?
optionsUsers() - Method in class org.apache.taverna.server.master.admin.AdminBean
org.apache.taverna.server.client - package org.apache.taverna.server.client: Implementation of a basic client for Taverna Server.
org.apache.taverna.server.client.generic - package org.apache.taverna.server.client.generic
org.apache.taverna.server.client.port - package org.apache.taverna.server.client.port
org.apache.taverna.server.client.rest - package org.apache.taverna.server.client.rest
org.apache.taverna.server.client.wadl - package org.apache.taverna.server.client.wadl
org.apache.taverna.server.localworker.api - package org.apache.taverna.server.localworker.api
org.apache.taverna.server.localworker.impl - package org.apache.taverna.server.localworker.impl
org.apache.taverna.server.localworker.impl.utils - package org.apache.taverna.server.localworker.impl.utils
org.apache.taverna.server.localworker.remote - package org.apache.taverna.server.localworker.remote: Interfaces exported by worker classes to the server.
org.apache.taverna.server.localworker.server - package org.apache.taverna.server.localworker.server: Interfaces exported by the server to worker classes.
org.apache.taverna.server.master - package org.apache.taverna.server.master: The core of the implementation of Taverna Server, including the implementations of the SOAP and REST interfaces.
org.apache.taverna.server.master.admin - package org.apache.taverna.server.master.admin: This package contains the RESTful administration interface to Taverna Server.
org.apache.taverna.server.master.api - package org.apache.taverna.server.master.api: API interfaces for the main service classes.
org.apache.taverna.server.master.common - package org.apache.taverna.server.master.common: This package contains the common XML elements used throughout Taverna Server's various interfaces.
org.apache.taverna.server.master.common.version - package org.apache.taverna.server.master.common.version
org.apache.taverna.server.master.defaults - package org.apache.taverna.server.master.defaults: This package contains information about the various default values supported by the server.
org.apache.taverna.server.master.exceptions - package org.apache.taverna.server.master.exceptions: This package contains the exceptions/faults thrown by Taverna Server.
org.apache.taverna.server.master.facade - package org.apache.taverna.server.master.facade: Simple facade used at the top level of the Taverna Server in order to provide an entry splash page.
org.apache.taverna.server.master.factories - package org.apache.taverna.server.master.factories: These interfaces define the principal way for the factories of worker classes to be invoked.
org.apache.taverna.server.master.identity - package org.apache.taverna.server.master.identity: Implementations of beans that map global user identities to local usernames.
org.apache.taverna.server.master.interaction - package org.apache.taverna.server.master.interaction: This package contains the Atom feed implementation for interactions for a particular workflow run.
org.apache.taverna.server.master.interfaces - package org.apache.taverna.server.master.interfaces: Interfaces to the main worker classes that provide the magical power that drives the webapp front-end.
org.apache.taverna.server.master.localworker - package org.apache.taverna.server.master.localworker: Implementation of a Taverna Server back-end that works by forking off workflow executors on the local system.
org.apache.taverna.server.master.notification - package org.apache.taverna.server.master.notification: The notification fabric and implementations of notification dispatchers that support subscription.
org.apache.taverna.server.master.notification.atom - package org.apache.taverna.server.master.notification.atom: This package contains the Atom feed implementation within Taverna Server.
org.apache.taverna.server.master.rest - package org.apache.taverna.server.master.rest: This package contains the RESTful interface to Taverna Server.
org.apache.taverna.server.master.rest.handler - package org.apache.taverna.server.master.rest.handler: This package contains type handlers for the RESTful interface to Taverna Server.
org.apache.taverna.server.master.soap - package org.apache.taverna.server.master.soap: This package contains the SOAP interface to Taverna Server.
org.apache.taverna.server.master.usage - package org.apache.taverna.server.master.usage: Resource usage recording mechanism.
org.apache.taverna.server.master.utils - package org.apache.taverna.server.master.utils: Miscellaneous utility classes.
org.apache.taverna.server.master.worker - package org.apache.taverna.server.master.worker: A Taverna Server back-end that works by forking off workflow executors.
org.apache.taverna.server.port_description - package org.apache.taverna.server.port_description
org.apache.taverna.server.port_description.utils - package org.apache.taverna.server.port_description.utils
org.apache.taverna.server.rmidaemon - package org.apache.taverna.server.rmidaemon: RMI daemon implementation.
org.apache.taverna.server.unixforker - package org.apache.taverna.server.unixforker
org.apache.taverna.server.usagerecord - package org.apache.taverna.server.usagerecord: Open Grid Forum GFD.98 Usage Record Format
org.apache.taverna.server.usagerecord.xml.dsig - package org.apache.taverna.server.usagerecord.xml.dsig
org.apache.taverna.server.usagerecord.xml.urf - package org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record Format JAXB elements.
org.apache.taverna.server.usagerecord.xml.urf2 - package org.apache.taverna.server.usagerecord.xml.urf2: Open Grid Forum GFD.204 Usage Record Format JAXB elements.
OUT - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerRunREST.PathNames
output - Variable in class org.apache.taverna.server.client.port.OutputDescription
output - Variable in class org.apache.taverna.server.client.rest.RunDescription
output() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName
Output(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Output: Create new instance using existing Client instance, and a base URI and any parameters
output - Variable in class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription: The location of the Baclava output.
output - Variable in class org.apache.taverna.server.port_description.OutputDescription.OutputPort
OutputDescription - Class in org.apache.taverna.server.client.port: Java class for outputDescription complex type.
OutputDescription() - Constructor for class org.apache.taverna.server.client.port.OutputDescription
OutputDescription - Class in org.apache.taverna.server.port_description: A description of the outputs of a workflow run, as they are currently known about.
OutputDescription() - Constructor for class org.apache.taverna.server.port_description.OutputDescription
OutputDescription.OutputPort - Class in org.apache.taverna.server.port_description
outputOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Get an outline of the operations supported.
OutputPort - Class in org.apache.taverna.server.client.port: Java class for OutputPort complex type.
OutputPort() - Constructor for class org.apache.taverna.server.client.port.OutputPort
OutputPort() - Constructor for class org.apache.taverna.server.port_description.OutputDescription.OutputPort
OverloadedException - Exception in org.apache.taverna.server.master.exceptions: Exception that is thrown to indicate that the state change requested for a run is currently impossible due to excessive server load.
OverloadedException() - Constructor for exception org.apache.taverna.server.master.exceptions.OverloadedException
OverloadedException(Throwable) - Constructor for exception org.apache.taverna.server.master.exceptions.OverloadedException
OverloadedException(String, Throwable) - Constructor for exception org.apache.taverna.server.master.exceptions.OverloadedException
OverloadedException(String) - Constructor for exception org.apache.taverna.server.master.exceptions.OverloadedException
OverloadedHandler - Class in org.apache.taverna.server.master.rest.handler
OverloadedHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.OverloadedHandler
owner - Variable in class org.apache.taverna.server.client.rest.RunDescription
owner - Variable in class org.apache.taverna.server.client.rest.SecurityDescriptor
owner() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security
Owner(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Owner: Create new instance using existing Client instance, and a base URI and any parameters
owner - Variable in class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription: The identity of the owner of the workflow run.
owner - Variable in class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.Descriptor: The identity of the owner of the enclosing workflow run.
OWNER - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST.PathNames
ownerOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Get an outline of the operations supported.

P

p - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.DSAKeyValueType
password - Variable in class org.apache.taverna.server.client.generic.PasswordCredential
password - Variable in class org.apache.taverna.server.master.admin.Admin.UserDesc
Password() - Constructor for class org.apache.taverna.server.master.common.Credential.Password
password - Variable in class org.apache.taverna.server.master.common.Credential.Password
PASSWORD_FILE - Static variable in class org.apache.taverna.server.localworker.api.Constants: The name of the file that contains the password to unlock the keystore and truststore.
PASSWORD_FILE - Static variable in interface org.apache.taverna.server.master.defaults.Default: Default value for LocalWorkerState.passwordFile.
PasswordCredential - Class in org.apache.taverna.server.client.generic: Java class for PasswordCredential complex type.
PasswordCredential() - Constructor for class org.apache.taverna.server.client.generic.PasswordCredential
PasswordIssuer - Class in org.apache.taverna.server.master.worker: A simple password issuing bean.
PasswordIssuer() - Constructor for class org.apache.taverna.server.master.worker.PasswordIssuer
PasswordIssuer(String) - Constructor for class org.apache.taverna.server.master.worker.PasswordIssuer
path(String) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd
Path(Client, URI, String) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path: Create new instance using existing Client instance, and a base URI and any parameters
Path(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path: Create new instance using existing Client instance, and the URI from which the parameters will be extracted
path - Variable in class org.apache.taverna.server.master.common.DirEntryReference: The path of the entry.
path - Variable in class org.apache.taverna.server.master.soap.DirEntry
path2(String) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd
Path2(Client, URI, String) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path2: Create new instance using existing Client instance, and a base URI and any parameters
Path2(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path2: Create new instance using existing Client instance, and the URI from which the parameters will be extracted
path3(String) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd
Path3(Client, URI, String) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path3: Create new instance using existing Client instance, and a base URI and any parameters
Path3(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path3: Create new instance using existing Client instance, and the URI from which the parameters will be extracted
Permission - Enum in org.apache.taverna.server.client.generic: Java class for Permission.
permission - Variable in class org.apache.taverna.server.client.rest.LinkedPermissionDescription
permission - Variable in class org.apache.taverna.server.client.rest.PermissionDescription
permission - Variable in class org.apache.taverna.server.client.rest.PermissionsDescription
Permission - Enum in org.apache.taverna.server.master.common: Description of a permission to access a particular workflow run.
permission - Variable in class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.PermissionDescription: What permission to grant them?
permission - Variable in class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.PermissionsDescription.LinkedPermissionDescription: What are they granted?
permission - Variable in class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.PermissionsDescription: List of descriptions of permissions.
permission - Variable in class org.apache.taverna.server.master.soap.PermissionList: The list of (non-default) permissions granted.
permission - Variable in class org.apache.taverna.server.master.soap.PermissionList.SinglePermissionMapping: The permission level that the user is granted.
PermissionDescription - Class in org.apache.taverna.server.client.rest: Java class for permissionDescription complex type.
PermissionDescription() - Constructor for class org.apache.taverna.server.client.rest.PermissionDescription
PermissionDescription() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.PermissionDescription
PermissionHandler - Class in org.apache.taverna.server.master.rest.handler: Handler that allows CXF to send and receive permissions as plain text directly.
PermissionHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.PermissionHandler
PermissionList - Class in org.apache.taverna.server.master.soap: The list of permissions to access a workflow run of users other than the owner.
PermissionList() - Constructor for class org.apache.taverna.server.master.soap.PermissionList
PermissionList.SinglePermissionMapping - Class in org.apache.taverna.server.master.soap: The type of a single mapped permission.
permissionOptions(String) - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Get an outline of the operations supported.
permissions - Variable in class org.apache.taverna.server.client.rest.SecurityDescriptor
permissions() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security
Permissions(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Permissions: Create new instance using existing Client instance, and a base URI and any parameters
permissions - Variable in class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.Descriptor: Where to get the permissions on the run.
PermissionsDescription - Class in org.apache.taverna.server.client.rest: Java class for permissionsDescription complex type.
PermissionsDescription() - Constructor for class org.apache.taverna.server.client.rest.PermissionsDescription
PermissionsDescription() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.PermissionsDescription
PermissionsDescription(UriBuilder, Map<String, Permission>) - Constructor for class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.PermissionsDescription: Initialise the description of a collection of permissions.
permissionsId(String) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security
PermissionsId(Client, URI, String) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.PermissionsId: Create new instance using existing Client instance, and a base URI and any parameters
PermissionsId(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.PermissionsId: Create new instance using existing Client instance, and the URI from which the parameters will be extracted
permissionsOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Get an outline of the operations supported.
permitAccess(UsernamePrincipal, TavernaRun) - Method in interface org.apache.taverna.server.master.interfaces.Policy: Return whether the user has access to a particular workflow run.
permitCreate(UsernamePrincipal, Workflow) - Method in interface org.apache.taverna.server.master.interfaces.Policy: Test whether the user can create an instance of the given workflow.
permitDestroy(UsernamePrincipal, TavernaRun) - Method in interface org.apache.taverna.server.master.interfaces.Policy: Test whether the user can destroy a workflow instance run or manipulate its expiry date.
permitDestroy(TavernaRun) - Method in class org.apache.taverna.server.master.TavernaServerSupport: Test whether the current user can destroy or control the lifespan of the given run.
PermittedListeners - Class in org.apache.taverna.server.client.rest: Java class for anonymous complex type.
PermittedListeners() - Constructor for class org.apache.taverna.server.client.rest.PermittedListeners
PermittedListeners() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerREST.PermittedListeners: Make an empty list of permitted listener types.
PermittedListeners(List<String>) - Constructor for class org.apache.taverna.server.master.rest.TavernaServerREST.PermittedListeners: Make a list of permitted listener types.
permittedListenerTypes - Variable in class org.apache.taverna.server.client.rest.PolicyDescription
permittedListenerTypes() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy
PermittedListenerTypes(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.PermittedListenerTypes: Create new instance using existing Client instance, and a base URI and any parameters
permittedListenerTypes - Variable in class org.apache.taverna.server.master.rest.TavernaServerREST.PolicyView.PolicyDescription: Where to go to find out about what listeners are allowed.
PermittedWorkflows - Class in org.apache.taverna.server.client.rest: Java class for anonymous complex type.
PermittedWorkflows() - Constructor for class org.apache.taverna.server.client.rest.PermittedWorkflows
permittedWorkflows - Variable in class org.apache.taverna.server.client.rest.PolicyDescription
permittedWorkflows() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy
PermittedWorkflows(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.PermittedWorkflows: Create new instance using existing Client instance, and a base URI and any parameters
PermittedWorkflows() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerREST.PermittedWorkflows: Make an empty list of permitted workflows.
PermittedWorkflows(List<URI>) - Constructor for class org.apache.taverna.server.master.rest.TavernaServerREST.PermittedWorkflows: Make a list of permitted workflows.
permittedWorkflows - Variable in class org.apache.taverna.server.master.rest.TavernaServerREST.PolicyView.PolicyDescription: Where to go to find out about what workflows are allowed.
permittedWorkflowURIs - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
permitUpdate(UsernamePrincipal, TavernaRun) - Method in interface org.apache.taverna.server.master.interfaces.Policy: Test whether the user can modify a workflow run (other than for its expiry date).
permitUpdate(TavernaRun) - Method in class org.apache.taverna.server.master.TavernaServerSupport: Test whether the current user can do updates to the given run.
PERMS - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST.PathNames
persist(T) - Method in class org.apache.taverna.server.master.utils.JDOSupport: Make an instance of the context class persist in the database.
PersistenceManagerBuilder() - Constructor for class org.apache.taverna.server.master.utils.JDOSupport.PersistenceManagerBuilder
persistRun(RemoteRunDelegate) - Method in class org.apache.taverna.server.master.worker.RunDatabaseDAO: Make a workflow run persistent.
pgenCounter - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.DSAKeyValueType
PGPDataType - Class in org.apache.taverna.server.usagerecord.xml.dsig: Java class for PGPDataType complex type.
PGPDataType() - Constructor for class org.apache.taverna.server.usagerecord.xml.dsig.PGPDataType
PhaseResource - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type PhaseResource
PhaseResource() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.PhaseResource
phaseUnit - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Disk
phaseUnit - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Memory
phaseUnit - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Network
phaseUnit - Variable in class org.apache.taverna.server.usagerecord.xml.urf.PhaseResource
phaseUnit - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Swap
pickArbitraryRun() - Method in class org.apache.taverna.server.master.worker.RunDatabase
pickArbitraryRun() - Method in class org.apache.taverna.server.master.worker.RunDatabaseDAO
pickArbitraryRun() - Method in interface org.apache.taverna.server.master.worker.RunDBSupport: Select an arbitrary representative run.
ping() - Method in class org.apache.taverna.server.localworker.impl.LocalWorker
ping() - Method in interface org.apache.taverna.server.localworker.remote.RemoteSingleRun: A do-nothing method, used to check the general reachability of the workflow run.
ping() - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun: Test if this run is really there.
ping() - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
POL - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerREST.PathNames
POL_CAPABILITIES - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerREST.PathNames
POL_NOTIFIERS - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerREST.PathNames
POL_OP_LIMIT - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerREST.PathNames
POL_PERM_LIST - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerREST.PathNames
POL_PERM_WF - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerREST.PathNames
POL_RUN_LIMIT - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerREST.PathNames
policy - Variable in class org.apache.taverna.server.client.rest.ServerDescription
policy() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root
Policy(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy: Create new instance using existing Client instance, and a base URI and any parameters
Policy - Interface in org.apache.taverna.server.master.interfaces: Simple policy interface.
policy - Variable in class org.apache.taverna.server.master.rest.TavernaServerREST.ServerDescription: Reference to the policy description part of this server.
PolicyDescription - Class in org.apache.taverna.server.client.rest: Java class for anonymous complex type.
PolicyDescription() - Constructor for class org.apache.taverna.server.client.rest.PolicyDescription
PolicyDescription() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerREST.PolicyView.PolicyDescription: Make a blank server description.
PolicyDescription(UriInfo) - Constructor for class org.apache.taverna.server.master.rest.TavernaServerREST.PolicyView.PolicyDescription: Make a server description.
PolicyLimits - Interface in org.apache.taverna.server.master.worker: The worker policy delegates certain limits to the state model of the particular worker.
Port - Class in org.apache.taverna.server.client.port: Java class for Port complex type.
Port() - Constructor for class org.apache.taverna.server.client.port.Port
port - Variable in class org.apache.taverna.server.master.common.InputDescription: The port/value assignment.
Port() - Constructor for class org.apache.taverna.server.master.common.InputDescription.Port: Make a blank port description.
Port(Input) - Constructor for class org.apache.taverna.server.master.common.InputDescription.Port: Make a port description suitable for the given input.
PortDescription - Class in org.apache.taverna.server.client.port: Java class for PortDescription complex type.
PortDescription() - Constructor for class org.apache.taverna.server.client.port.PortDescription
ports - Variable in class org.apache.taverna.server.port_description.OutputDescription
postAtomXml(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Interaction: Adds an entry to this ATOM feed.
postAtomXml(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Interaction: Adds an entry to this ATOM feed.
postJson(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path2: Creates a directory in the filesystem beneath the working directory of the workflow run, or creates or updates a file's contents, where that file is in or below the working directory of a workflow run.
postJson(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path2: Creates a directory in the filesystem beneath the working directory of the workflow run, or creates or updates a file's contents, where that file is in or below the working directory of a workflow run.
postJsonAsOctetStream(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners: Add a new event listener to the named workflow run.
postJsonAsOctetStream(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners: Add a new event listener to the named workflow run.
postJsonAsOctetStream(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Credentials: Creates a new credential.
postJsonAsOctetStream(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Credentials: Creates a new credential.
postJsonAsOctetStream(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Permissions: Creates a new assignment of permissions to a particular user.
postJsonAsOctetStream(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Permissions: Creates a new assignment of permissions to a particular user.
postJsonAsOctetStream(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Trusts: Adds a new trusted identity.
postJsonAsOctetStream(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Trusts: Adds a new trusted identity.
postTextUriListAsJson(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path: Creates or updates a file in a particular location beneath the working directory of the workflow run with the contents of a publicly readable URL.
postTextUriListAsJson(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path: Creates or updates a file in a particular location beneath the working directory of the workflow run with the contents of a publicly readable URL.
postTextUriListAsOctetStream(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Runs: Accepts a URL to a workflow to download and run.
postTextUriListAsOctetStream(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Runs: Accepts a URL to a workflow to download and run.
postTextUriListAsXml(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path: Creates or updates a file in a particular location beneath the working directory of the workflow run with the contents of a publicly readable URL.
postTextUriListAsXml(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path: Creates or updates a file in a particular location beneath the working directory of the workflow run with the contents of a publicly readable URL.
postVndTavernaT2flowXmlAsOctetStream(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Runs: Accepts (or not) a request to create a new run executing the given workflow.
postVndTavernaT2flowXmlAsOctetStream(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Runs: Accepts (or not) a request to create a new run executing the given workflow.
postXml(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path2: Creates a directory in the filesystem beneath the working directory of the workflow run, or creates or updates a file's contents, where that file is in or below the working directory of a workflow run.
postXml(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path2: Creates a directory in the filesystem beneath the working directory of the workflow run, or creates or updates a file's contents, where that file is in or below the working directory of a workflow run.
postXmlAsOctetStream(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Runs: Accepts (or not) a request to create a new run executing the given workflow.
postXmlAsOctetStream(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Runs: Accepts (or not) a request to create a new run executing the given workflow.
postXmlAsOctetStream(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners: Add a new event listener to the named workflow run.
postXmlAsOctetStream(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners: Add a new event listener to the named workflow run.
postXmlAsOctetStream(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Credentials: Creates a new credential.
postXmlAsOctetStream(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Credentials: Creates a new credential.
postXmlAsOctetStream(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Permissions: Creates a new assignment of permissions to a particular user.
postXmlAsOctetStream(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Permissions: Creates a new assignment of permissions to a particular user.
postXmlAsOctetStream(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Trusts: Adds a new trusted identity.
postXmlAsOctetStream(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Trusts: Adds a new trusted identity.
PREFERRED_URI_PARAM - Static variable in class org.apache.taverna.server.master.notification.atom.AtomFeed: The name of a parameter that states what address we should claim that the feed's internally-generated URIs are relative to.
PREFIX - Static variable in class org.apache.taverna.server.master.identity.WorkflowInternalAuthProvider
primary - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Host
primary - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.HostnameType
processId - Variable in class org.apache.taverna.server.usagerecord.xml.urf.JobIdentity
processId - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.ExecutionHostType
Processors - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type Processors
Processors() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.Processors
processors - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType
profile - Variable in class org.apache.taverna.server.master.common.ProfileList
PROFILE - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerRunREST.PathNames
ProfileList - Class in org.apache.taverna.server.master.common: Description of the profiles that can apply to a workflow.
ProfileList() - Constructor for class org.apache.taverna.server.master.common.ProfileList
ProfileList.Info - Class in org.apache.taverna.server.master.common: Description of a single workflow profile.
profileOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Produce the workflow profile HTTP operations.
ProjectName - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type ProjectName
ProjectName() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.ProjectName
properties - Variable in class org.apache.taverna.server.client.rest.ListenerDescription
Properties() - Constructor for class org.apache.taverna.server.client.rest.ListenerDescription.Properties
Properties - Class in org.apache.taverna.server.client.rest: Java class for anonymous complex type.
Properties() - Constructor for class org.apache.taverna.server.client.rest.Properties
properties() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name
Properties(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name.Properties: Create new instance using existing Client instance, and a base URI and any parameters
properties - Variable in class org.apache.taverna.server.master.rest.TavernaServerListenersREST.ListenerDescription: The name and location of the properties supported by the event listener.
Properties() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerListenersREST.Properties: Make an empty description of the properties of a listener.
Properties(UriBuilder, String[]) - Constructor for class org.apache.taverna.server.master.rest.TavernaServerListenersREST.Properties: Make the description of the properties of a listener.
propertiesOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerListenersREST.TavernaServerListenerREST: Get an outline of the operations supported.
propertiesPropertyName(String) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name: This represents a single property attached of an event listener.
PropertiesPropertyName(Client, URI, String) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name.PropertiesPropertyName: Create new instance using existing Client instance, and a base URI and any parameters
PropertiesPropertyName(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name.PropertiesPropertyName: Create new instance using existing Client instance, and the URI from which the parameters will be extracted
Property - Enum in org.apache.taverna.server.client
property - Variable in class org.apache.taverna.server.client.rest.ListenerDescription.Properties
property - Variable in class org.apache.taverna.server.client.rest.Properties
property - Variable in class org.apache.taverna.server.master.rest.TavernaServerListenersREST.Properties: The references to the properties of a listener.
PropertyDescription - Class in org.apache.taverna.server.client.rest: Java class for PropertyDescription complex type.
PropertyDescription() - Constructor for class org.apache.taverna.server.client.rest.PropertyDescription
PropertyDescription() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerListenersREST.PropertyDescription: Make an empty description of a property.
putAsJson(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path: Creates or updates a file in a particular location beneath the working directory of the workflow run.
putAsJson(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path: Creates or updates a file in a particular location beneath the working directory of the workflow run.
putAsXml(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path: Creates or updates a file in a particular location beneath the working directory of the workflow run.
putAsXml(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path: Creates or updates a file in a particular location beneath the working directory of the workflow run.
putJson(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.InputName: Sets the source for a particular input port.
putJson(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.InputName: Sets the source for a particular input port.
putJson(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.CredentialsId: Updates a particular credential.
putJson(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.CredentialsId: Updates a particular credential.
putJson(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.TrustsId: Updates a particular trusted identity.
putJson(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.TrustsId: Updates a particular trusted identity.
putOctetStreamAsJson(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path: Creates or updates a file in a particular location beneath the working directory of the workflow run.
putOctetStreamAsJson(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path: Creates or updates a file in a particular location beneath the working directory of the workflow run.
putOctetStreamAsXml(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path: Creates or updates a file in a particular location beneath the working directory of the workflow run.
putOctetStreamAsXml(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path: Creates or updates a file in a particular location beneath the working directory of the workflow run.
putTextPlain(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Expiry: Sets the time when the workflow run becomes eligible for automatic deletion.
putTextPlain(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Expiry: Sets the time when the workflow run becomes eligible for automatic deletion.
putTextPlain(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.GenerateProvenance: Whether to create the run bundle for the workflow run.
putTextPlain(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.GenerateProvenance: Whether to create the run bundle for the workflow run.
putTextPlain(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.Baclava: Sets the Baclava file describing the inputs.
putTextPlain(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.Baclava: Sets the Baclava file describing the inputs.
putTextPlain(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name.PropertiesPropertyName: Set the value of the particular property of an event listener attached to a workflow run.
putTextPlain(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name.PropertiesPropertyName: Set the value of the particular property of an event listener attached to a workflow run.
putTextPlain(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Name: Set the descriptive name of the workflow run.
putTextPlain(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Name: Set the descriptive name of the workflow run.
putTextPlain(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Output: Sets the Baclava file where output will be written; empty means use multiple simple files in the out directory.
putTextPlain(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Output: Sets the Baclava file where output will be written; empty means use multiple simple files in the out directory.
putTextPlain(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.PermissionsId: Updates the permissions granted to a particular user.
putTextPlain(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.PermissionsId: Updates the permissions granted to a particular user.
putTextPlain(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Status: Attempts to update the status of the workflow run.
putTextPlain(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Status: Attempts to update the status of the workflow run.
putXml(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.InputName: Sets the source for a particular input port.
putXml(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.InputName: Sets the source for a particular input port.
putXml(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.CredentialsId: Updates a particular credential.
putXml(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.CredentialsId: Updates a particular credential.
putXml(Object, GenericType<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.TrustsId: Updates a particular trusted identity.
putXml(Object, Class<T>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.TrustsId: Updates a particular trusted identity.
putXmlAsCredential(Credential) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.CredentialsId: Updates a particular credential.
putXmlAsInputDescription(InputDescription) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.InputName: Sets the source for a particular input port.
putXmlAsTrustDescriptor(TrustDescriptor) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.TrustsId: Updates a particular trusted identity.

Q

q - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.DSAKeyValueType
query(String) - Method in class org.apache.taverna.server.master.utils.JDOSupport: Get an instance of a query in JDOQL.
Queue - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type Queue
Queue() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.Queue
queue - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType
QueueType - Class in org.apache.taverna.server.usagerecord.xml.urf2: Open Grid Forum GFD.204 Usage Record type QueueType
QueueType() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf2.QueueType

R

RateLimitedDispatcher - Class in org.apache.taverna.server.master.notification: Rate-limiting support.
RateLimitedDispatcher() - Constructor for class org.apache.taverna.server.master.notification.RateLimitedDispatcher
readExternal(ObjectInput) - Method in class org.apache.taverna.server.master.common.Workflow
readFrom(Class<Entry>, Type, Annotation[], MediaType, MultivaluedMap<String, String>, InputStream) - Method in class org.apache.taverna.server.master.rest.handler.EntryHandler
readFrom(Class<InputStream>, Type, Annotation[], MediaType, MultivaluedMap<String, String>, InputStream) - Method in class org.apache.taverna.server.master.rest.handler.InputStreamMessageHandler
readFrom(Class<Permission>, Type, Annotation[], MediaType, MultivaluedMap<String, String>, InputStream) - Method in class org.apache.taverna.server.master.rest.handler.PermissionHandler
readFrom(Class<Workflow>, Type, Annotation[], MediaType, MultivaluedMap<String, String>, InputStream) - Method in class org.apache.taverna.server.master.rest.handler.Scufl2DocumentHandler
readFrom(Class<Workflow>, Type, Annotation[], MediaType, MultivaluedMap<String, String>, InputStream) - Method in class org.apache.taverna.server.master.rest.handler.T2FlowDocumentHandler
readFrom(Class<List<URI>>, Type, Annotation[], MediaType, MultivaluedMap<String, String>, InputStream) - Method in class org.apache.taverna.server.master.rest.handler.URIListHandler
recordId - Variable in class org.apache.taverna.server.usagerecord.xml.urf.RecordIdentity
recordId - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.RecordIdentityBlockType
RecordIdentity - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type RecordIdentity
RecordIdentity() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.RecordIdentity
recordIdentity - Variable in class org.apache.taverna.server.usagerecord.xml.urf.UsageRecordType
recordIdentityBlock - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecordType
RecordIdentityBlockType - Class in org.apache.taverna.server.usagerecord.xml.urf2: Open Grid Forum GFD.204 Usage Record type RecordIdentityBlockType
RecordIdentityBlockType() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf2.RecordIdentityBlockType
ref - Variable in class org.apache.taverna.server.master.common.Uri: This type is characterised by an attribute that is the reference to some other element.
ref - Variable in class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription.Expiry: Where to go to read the exiry
reference - Variable in class org.apache.taverna.server.client.rest.InputDescription
Reference() - Constructor for class org.apache.taverna.server.client.rest.InputDescription.Reference
Reference() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerInputREST.InDesc.Reference
reference - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.ManifestType
reference - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.SignedInfoType
ReferenceType - Class in org.apache.taverna.server.usagerecord.xml.dsig: Java class for ReferenceType complex type.
ReferenceType() - Constructor for class org.apache.taverna.server.usagerecord.xml.dsig.ReferenceType
registerRun(TavernaRun) - Method in interface org.apache.taverna.server.master.interfaces.RunStore: Adds a workflow instance run to the store.
registerRun(TavernaRun) - Method in class org.apache.taverna.server.master.worker.RunDatabase
registrationPollMillis - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
registrationWaitSeconds - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
Registry - Class in org.apache.taverna.server.rmidaemon: Special version of rmiregistry.
Registry() - Constructor for class org.apache.taverna.server.rmidaemon.Registry
REGISTRY_JAR - Static variable in interface org.apache.taverna.server.master.defaults.Default: The name of the resource that is the implementation of the subprocess that acts as the RMI registry.
registryHost - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
registryPort - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
reinitFactory() - Method in class org.apache.taverna.server.master.localworker.ForkRunFactory
reinitFactory() - Method in class org.apache.taverna.server.master.localworker.IdAwareForkRunFactory
reinitFactory() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration: Drop any current references to the run factory subprocess and kill it off.
reinitRegistry() - Method in class org.apache.taverna.server.master.localworker.AbstractRemoteRunFactory
reinitRegistry() - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration: Drop any current references to the registry of runs, and kill off that process.
RemoteDirectory - Interface in org.apache.taverna.server.localworker.remote: Represents a directory that is the working directory of a workflow run, or a sub-directory of it.
RemoteDirectoryEntry - Interface in org.apache.taverna.server.localworker.remote: An entry in a RemoteDirectory representing a file or sub-directory.
RemoteFile - Interface in org.apache.taverna.server.localworker.remote: Represents a file in the working directory of a workflow instance run, or in some sub-directory of it.
RemoteInput - Interface in org.apache.taverna.server.localworker.remote: This represents the assignment of inputs to input ports of the workflow.
RemoteListener - Interface in org.apache.taverna.server.localworker.remote: An event listener that is attached to a RemoteSingleRun.
RemoteRunDelegate - Class in org.apache.taverna.server.master.worker: Bridging shim between the WebApp world and the RMI world.
RemoteRunDelegate(Date, Workflow, RemoteSingleRun, int, RunDBSupport, UUID, boolean, FactoryBean) - Constructor for class org.apache.taverna.server.master.worker.RemoteRunDelegate
RemoteRunFactory - Interface in org.apache.taverna.server.localworker.remote: The main RMI-enabled interface for creating runs.
RemoteSecurityContext - Interface in org.apache.taverna.server.localworker.remote: Outline of the security context for a workflow run.
RemoteSingleRun - Interface in org.apache.taverna.server.localworker.remote
RemoteStatus - Enum in org.apache.taverna.server.localworker.remote: States of a workflow run.
removeRunFeedEntry(TavernaRun, String) - Method in class org.apache.taverna.server.master.interaction.InteractionFeedSupport: Deletes an entry from a feed.
resolve(String) - Method in interface org.apache.taverna.server.master.interfaces.UriBuilderFactory: Resolves a URI with respect to the base URI of the factory.
resolve(String) - Method in class org.apache.taverna.server.master.notification.atom.AtomFeed
resolve(String) - Method in class org.apache.taverna.server.master.TavernaServer
ResourceType - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type ResourceType
ResourceType() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.ResourceType
respond(Response.Status, Exception) - Method in class org.apache.taverna.server.master.rest.handler.HandlerCore: Simplified interface for building responses.
respond(Response.Status, String, Exception) - Method in class org.apache.taverna.server.master.rest.handler.HandlerCore: Simplified interface for building responses.
RestUtils - Class in org.apache.taverna.server.master.utils: Utilities that make it easier to write REST services.
RestUtils() - Constructor for class org.apache.taverna.server.master.utils.RestUtils
RetrievalMethodType - Class in org.apache.taverna.server.usagerecord.xml.dsig: Java class for RetrievalMethodType complex type.
RetrievalMethodType() - Constructor for class org.apache.taverna.server.usagerecord.xml.dsig.RetrievalMethodType
retrieveUser(String, Object) - Method in class org.apache.taverna.server.master.identity.WorkflowInternalAuthProvider: Retrieve the UserDetails from the relevant store, with the option of throwing an AuthenticationException immediately if the presented credentials are incorrect (this is especially useful if it is necessary to bind to a resource as the user in order to obtain or generate a UserDetails).
retrieveUser(String, UsernamePasswordAuthenticationToken) - Method in class org.apache.taverna.server.master.identity.WorkflowInternalAuthProvider
REVISION - Static variable in class org.apache.taverna.server.master.common.VersionedElement
Rewriter() - Constructor for class org.apache.taverna.server.master.common.Uri.Rewriter
RMI_HOST_PROP - Static variable in class org.apache.taverna.server.localworker.api.Constants: The Java property that holds the name of the host name to enforce.
RMI_PREFIX - Static variable in interface org.apache.taverna.server.master.defaults.Default: Prefix to use for RMI names.
Roles - Interface in org.apache.taverna.server.master.common: The roles defined in this webapp.
root(Client, URI) - Static method in class org.apache.taverna.server.client.wadl.TavernaServer
root() - Static method in class org.apache.taverna.server.client.wadl.TavernaServer
root(Client) - Static method in class org.apache.taverna.server.client.wadl.TavernaServer
Root(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root: Create new instance using existing Client instance, and a base URI and any parameters
ROOT - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerREST.PathNames
ROOT - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerRunREST.PathNames
ROOT - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST.PathNames
RSAKeyValueType - Class in org.apache.taverna.server.usagerecord.xml.dsig: Java class for RSAKeyValueType complex type.
RSAKeyValueType() - Constructor for class org.apache.taverna.server.usagerecord.xml.dsig.RSAKeyValueType
run - Variable in class org.apache.taverna.server.client.rest.RunList
Run - Class in org.apache.taverna.server.client
run() - Method in class org.apache.taverna.server.localworker.impl.utils.TimingOutTask
run - Variable in class org.apache.taverna.server.master.rest.TavernaServerREST.RunList: The references to the workflow runs.
RUN - Static variable in interface org.apache.taverna.server.port_description.Namespaces
RUN_COUNT_MAX - Static variable in interface org.apache.taverna.server.master.defaults.Default: Maximum number of runs to exist at once.
RUN_LIFE_MINUTES - Static variable in interface org.apache.taverna.server.master.defaults.Default: Initial lifetime of runs, in minutes.
RUN_OPERATING_LIMIT - Static variable in interface org.apache.taverna.server.master.defaults.Default: Maximum number of Status.Operating runs at any time.
RunAccounting - Interface in org.apache.taverna.server.localworker.api
runasPasswordFile - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
RunBean - Interface in org.apache.taverna.server.master.api: Description of properties supported by RunREST.
runBundle - Variable in class org.apache.taverna.server.client.rest.RunDescription
runBundle() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName
RunBundle(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.RunBundle: Create new instance using existing Client instance, and a base URI and any parameters
RUNBUNDLE - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerRunREST.PathNames
runBundle - Variable in class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription: The bundle describing the run.
runBundleOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Get an outline of the operations supported.
runCeased() - Method in interface org.apache.taverna.server.localworker.api.RunAccounting: Logs that a run has finished executing.
runCeased() - Method in class org.apache.taverna.server.localworker.impl.TavernaRunManager
RunConnection - Class in org.apache.taverna.server.master.worker: The representation of the connections to the runs that actually participates in the persistence system.
RunConnection() - Constructor for class org.apache.taverna.server.master.worker.RunConnection
runCount - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
runCount() - Method in interface org.apache.taverna.server.master.admin.Admin: The property for the number of runs that are currently in existence.
runCount() - Method in class org.apache.taverna.server.master.admin.AdminBean
RunDatabase - Class in org.apache.taverna.server.master.worker: The main facade bean that interfaces to the database of runs.
RunDatabase() - Constructor for class org.apache.taverna.server.master.worker.RunDatabase
RunDatabaseDAO - Class in org.apache.taverna.server.master.worker: This handles storing runs, interfacing with the underlying state engine as necessary.
RunDatabaseDAO() - Constructor for class org.apache.taverna.server.master.worker.RunDatabaseDAO
runDB - Variable in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
RunDBSupport - Interface in org.apache.taverna.server.master.worker: The interface to the database of runs.
RunDescription - Class in org.apache.taverna.server.client.rest: Java class for anonymous complex type.
RunDescription() - Constructor for class org.apache.taverna.server.client.rest.RunDescription
RunDescription() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription: An empty description of a run.
RunDescription(TavernaRun, UriInfo) - Constructor for class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription: A description of a particular run.
RunDescription.Expiry - Class in org.apache.taverna.server.client.rest: Java class for anonymous complex type.
RunDescription.Listeners - Class in org.apache.taverna.server.client.rest: Java class for anonymous complex type.
RunFactory - Interface in org.apache.taverna.server.master.factories: How to construct a Taverna Server Workflow Run.
RunFactoryConfiguration - Class in org.apache.taverna.server.master.worker
RunFactoryConfiguration() - Constructor for class org.apache.taverna.server.master.worker.RunFactoryConfiguration
runLimit - Variable in class org.apache.taverna.server.client.rest.PolicyDescription
runLimit() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy
RunLimit(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.Policy.RunLimit: Create new instance using existing Client instance, and a base URI and any parameters
runLimit - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
runLimit - Variable in class org.apache.taverna.server.master.rest.TavernaServerREST.PolicyView.PolicyDescription: Where to go to find out about the maximum number of runs.
RunList - Class in org.apache.taverna.server.client.rest: Java class for anonymous complex type.
RunList() - Constructor for class org.apache.taverna.server.client.rest.RunList
RunList() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerREST.RunList: Make an empty list of run references.
RunList(Map<String, TavernaRun>, UriBuilder) - Constructor for class org.apache.taverna.server.master.rest.TavernaServerREST.RunList: Make a list of references to workflow runs.
runOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Get an outline of the operations supported.
RunReference - Class in org.apache.taverna.server.master.common: A reference to a single workflow run, described using JAXB.
RunReference() - Constructor for class org.apache.taverna.server.master.common.RunReference: Make a blank run reference.
RunReference(String, UriBuilder) - Constructor for class org.apache.taverna.server.master.common.RunReference: Make a reference to the given workflow run.
runs - Variable in class org.apache.taverna.server.client.rest.ServerDescription
runs() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root
Runs(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.Runs: Create new instance using existing Client instance, and a base URI and any parameters
RUNS - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerREST.PathNames
runs - Variable in class org.apache.taverna.server.master.rest.TavernaServerREST.ServerDescription: References to the collection of runs (known about by the current user) in this server.
runsOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerREST: Get an outline of the operations supported.
runsOptions() - Method in class org.apache.taverna.server.master.TavernaServer
runsRunName(String) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root: This represents how a Taverna Server workflow run looks to a RESTful API.
RunsRunName(Client, URI, String) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName: Create new instance using existing Client instance, and a base URI and any parameters
RunsRunName(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName: Create new instance using existing Client instance, and the URI from which the parameters will be extracted
runStarted() - Method in interface org.apache.taverna.server.localworker.api.RunAccounting: Logs that a run has started executing.
runStarted() - Method in class org.apache.taverna.server.localworker.impl.TavernaRunManager
RunStore - Interface in org.apache.taverna.server.master.interfaces: Interface to the mechanism that looks after the mapping of names to runs.
RuntimeExceptionWrapper - Class in org.apache.taverna.server.master.utils: Aspect used to convert runtime exceptions into a form that can be nicely conveyed to the outside world as HTTP errors.
RuntimeExceptionWrapper() - Constructor for class org.apache.taverna.server.master.utils.RuntimeExceptionWrapper

S

saveURtoDB(String) - Method in class org.apache.taverna.server.master.usage.UsageRecordRecorder: How to save a usage record to the database.
saveURtoDB(UsageRecord) - Method in class org.apache.taverna.server.master.usage.UsageRecordRecorder
SCUFL2 - Static variable in class org.apache.taverna.server.master.rest.handler.Scufl2DocumentHandler
Scufl2DocumentHandler - Class in org.apache.taverna.server.master.rest.handler: Handler that allows a .scufl2 document to be read from and written to a REST message directly.
Scufl2DocumentHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.Scufl2DocumentHandler
SEC - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerRunREST.PathNames
SEC_POLICY_PROP - Static variable in class org.apache.taverna.server.localworker.api.Constants: The Java property holding security policy info.
secure(UriBuilder) - Static method in class org.apache.taverna.server.master.common.Uri
secure(UriInfo) - Static method in class org.apache.taverna.server.master.common.Uri
secure(URI) - Static method in class org.apache.taverna.server.master.common.Uri
secure(URI, String) - Static method in class org.apache.taverna.server.master.common.Uri
SECURE_FORK_IMPLEMENTATION_JAR - Static variable in interface org.apache.taverna.server.master.defaults.Default: The name of the resource that is the implementation of the subprocess that manages secure forking.
security() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName: Manages the security of the workflow run.
Security(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security: Create new instance using existing Client instance, and a base URI and any parameters
SECURITY_DIR_NAME - Static variable in class org.apache.taverna.server.localworker.api.Constants: The name of the directory (in the home directory) where security settings will be written.
SECURITY_POLICY_FILE - Static variable in class org.apache.taverna.server.localworker.api.Constants: The name of the file (in this code's resources) that provides the default security policy that we use.
SECURITY_POLICY_FILE - Static variable in class org.apache.taverna.server.master.localworker.AbstractRemoteRunFactory: The name of the resource that describes the default security policy to install.
SecurityBean - Interface in org.apache.taverna.server.master.api: Description of properties supported by RunSecurityREST.
securityContext - Variable in class org.apache.taverna.server.client.rest.RunDescription
securityContext - Variable in class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription: The location of the security context.
SecurityContextDelegate - Class in org.apache.taverna.server.master.worker: Implementation of a security context.
SecurityContextDelegate(RemoteRunDelegate, UsernamePrincipal, SecurityContextFactory) - Constructor for class org.apache.taverna.server.master.worker.SecurityContextDelegate: Initialise the context delegate.
SecurityContextFactory - Interface in org.apache.taverna.server.master.interfaces: How to create instances of a security context.
SecurityContextFactory - Class in org.apache.taverna.server.master.worker: Singleton factory.
SecurityContextFactory() - Constructor for class org.apache.taverna.server.master.worker.SecurityContextFactory
SecurityDescriptor - Class in org.apache.taverna.server.client.rest: Java class for SecurityDescriptor complex type.
SecurityDescriptor() - Constructor for class org.apache.taverna.server.client.rest.SecurityDescriptor
seed - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.DSAKeyValueType
SELF - Static variable in interface org.apache.taverna.server.master.common.Roles: The role of a workflow accessing itself.
serializeWorkflow(Workflow) - Method in class org.apache.taverna.server.master.localworker.AbstractRemoteRunFactory: How to convert a wrapped workflow into XML.
SERVER - Static variable in interface org.apache.taverna.server.master.common.Namespaces: The namespace for the server.
SERVER_REST - Static variable in interface org.apache.taverna.server.master.common.Namespaces
SERVER_SOAP - Static variable in interface org.apache.taverna.server.master.common.Namespaces
SERVER_WORKER_IMPLEMENTATION_JAR - Static variable in interface org.apache.taverna.server.master.defaults.Default: The name of the resource that is the implementation of the subprocess that this class will fork off.
serverBuildTimestamp - Variable in class org.apache.taverna.server.client.generic.VersionedElement
serverBuildTimestamp - Variable in class org.apache.taverna.server.master.common.VersionedElement: When was the server built?
ServerDescription - Class in org.apache.taverna.server.client.rest: Java class for anonymous complex type.
ServerDescription() - Constructor for class org.apache.taverna.server.client.rest.ServerDescription
ServerDescription() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerREST.ServerDescription: Make a blank server description.
ServerDescription(UriInfo, String) - Constructor for class org.apache.taverna.server.master.rest.TavernaServerREST.ServerDescription: Make a description of the server.
serverForkerJar - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
serverName - Variable in class org.apache.taverna.server.client.generic.TrustDescriptor
serverName - Variable in class org.apache.taverna.server.master.common.Trust: The names of the server(s) identified by this trust.
serverRevision - Variable in class org.apache.taverna.server.client.generic.VersionedElement
serverRevision - Variable in class org.apache.taverna.server.master.common.VersionedElement: What revision of server produced this element? Derived from SCM commit.
serverVersion - Variable in class org.apache.taverna.server.client.generic.TavernaRun
serverVersion - Variable in class org.apache.taverna.server.client.generic.VersionedElement
serverVersion - Variable in class org.apache.taverna.server.master.common.RunReference: What version of server produced this element?
serverVersion - Variable in class org.apache.taverna.server.master.common.VersionedElement: What version of server produced this element?
serverWorkerJar - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
ServiceLevel - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type ServiceLevel
ServiceLevel() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.ServiceLevel
serviceLevel - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType
serviceLevel - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType
serviceOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerREST: Get an outline of the operations supported.
serviceOptions() - Method in class org.apache.taverna.server.master.TavernaServer
serviceURI - Variable in class org.apache.taverna.server.client.generic.CredentialDescriptor
serviceURI - Variable in class org.apache.taverna.server.master.common.Credential: The service URI to use this credential with.
setAbdera(Abdera) - Method in class org.apache.taverna.server.master.interaction.InteractionFeedSupport
setAbdera(Abdera) - Method in class org.apache.taverna.server.master.notification.atom.AtomFeed
setAbdera(Abdera) - Method in class org.apache.taverna.server.master.rest.handler.EntryHandler
setAbdera(Abdera) - Method in class org.apache.taverna.server.master.rest.handler.FeedHandler
setAbsent(AbsentValue) - Method in class org.apache.taverna.server.client.port.OutputPort: Sets the value of the absent property.
setAccessSecret(String) - Method in class org.apache.taverna.server.master.notification.TwitterDispatcher
setAccessToken(String) - Method in class org.apache.taverna.server.master.notification.TwitterDispatcher
setAddress(URI, String) - Method in class org.apache.taverna.server.port_description.AbstractValue
setAdminHtmlFile(String) - Method in class org.apache.taverna.server.master.admin.AdminBean
setAlgorithm(String) - Method in class org.apache.taverna.server.master.utils.CertificateChainFetcher
setAlgorithm(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.CanonicalizationMethodType: Sets the value of the algorithm property.
setAlgorithm(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.DigestMethodType: Sets the value of the algorithm property.
setAlgorithm(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureMethodType: Sets the value of the algorithm property.
setAlgorithm(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.TransformType: Sets the value of the algorithm property.
setAllowNew(boolean) - Method in interface org.apache.taverna.server.master.admin.Admin: Set whether to allow new workflow runs to be created.
setAllowNew(boolean) - Method in class org.apache.taverna.server.master.admin.AdminBean
setAllowNewWorkflowRuns(boolean) - Method in interface org.apache.taverna.server.master.api.ManagementModel
setAllowNewWorkflowRuns(boolean) - Method in class org.apache.taverna.server.master.TavernaServerSupport
setApplicationContext(ApplicationContext) - Method in class org.apache.taverna.server.master.identity.CompositeIDMapper
setAuthorizedAddresses(String[]) - Method in class org.apache.taverna.server.master.identity.WorkflowInternalAuthProvider
setBaclava(Location) - Method in class org.apache.taverna.server.client.rest.TavernaRunInputs: Sets the value of the baclava property.
setBaclavaFile(String) - Method in interface org.apache.taverna.server.master.rest.TavernaServerInputREST: Set the Baclava file that will supply all the inputs to the workflow run.
setBaselineUserProperties(Properties) - Method in class org.apache.taverna.server.master.identity.UserStore
setCacheBound(int) - Method in class org.apache.taverna.server.master.identity.WorkflowInternalAuthProvider
setCanonicalizationMethod(CanonicalizationMethodType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignedInfoType: Sets the value of the canonicalizationMethod property.
setCapabilities(Location) - Method in class org.apache.taverna.server.client.rest.PolicyDescription: Sets the value of the capabilities property.
setCapability(String) - Method in class org.apache.taverna.server.client.generic.Capability: Sets the value of the capability property.
setCapabilitySource(CapabilityLister) - Method in class org.apache.taverna.server.master.TavernaServerSupport
setCdBuilder(ContentsDescriptorBuilder) - Method in interface org.apache.taverna.server.master.api.InputBean
setCdBuilder(ContentsDescriptorBuilder) - Method in interface org.apache.taverna.server.master.api.RunBean
setCertificateBytes(byte[]) - Method in class org.apache.taverna.server.client.generic.TrustDescriptor: Sets the value of the certificateBytes property.
setCertificateFetcher(CertificateChainFetcher) - Method in class org.apache.taverna.server.master.worker.SecurityContextFactory
setCertificateFile(String) - Method in class org.apache.taverna.server.client.generic.TrustDescriptor: Sets the value of the certificateFile property.
setCharge(Charge) - Method in class org.apache.taverna.server.usagerecord.xml.urf.UsageRecordType: Sets the value of the charge property.
setCharge(BigDecimal) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType: Sets the value of the charge property.
setCharge(BigDecimal) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType: Sets the value of the charge property.
setCharge(BigDecimal) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkUsageBlockType: Sets the value of the charge property.
setCharge(BigDecimal) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Sets the value of the charge property.
setCloudUsageBlock(CloudUsageBlockType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecordType: Sets the value of the cloudUsageBlock property.
setConfiguration(Location) - Method in class org.apache.taverna.server.client.rest.ListenerDescription: Sets the value of the configuration property.
setConstantId(String) - Method in class org.apache.taverna.server.master.identity.ConstantIDMapper: Sets what local user ID all users should be mapped to.
setConsumptionRate(Float) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Processors: Sets the value of the consumptionRate property.
setContentByteLength(Long) - Method in class org.apache.taverna.server.client.port.LeafValue: Sets the value of the contentByteLength property.
setContentFile(String) - Method in class org.apache.taverna.server.client.port.LeafValue: Sets the value of the contentFile property.
setContents(byte[]) - Method in class org.apache.taverna.server.client.File
setContents(String) - Method in class org.apache.taverna.server.client.File
setContents(String, Charset) - Method in class org.apache.taverna.server.client.File
setContents(InputStream) - Method in class org.apache.taverna.server.client.File
setContents(File) - Method in class org.apache.taverna.server.client.File
setContents(byte[]) - Method in class org.apache.taverna.server.localworker.impl.FileDelegate
setContents(byte[]) - Method in interface org.apache.taverna.server.localworker.remote.RemoteFile: Write the data to the file, totally replacing what was there before.
setContents(byte[]) - Method in interface org.apache.taverna.server.master.interfaces.File: Write the data to the file, totally replacing what was there before.
setContentsDescriptorBuilder(ContentsDescriptorBuilder) - Method in interface org.apache.taverna.server.master.api.TavernaServerBean
setContentsDescriptorBuilder(ContentsDescriptorBuilder) - Method in class org.apache.taverna.server.master.TavernaServer
setContentType(String) - Method in class org.apache.taverna.server.client.port.LeafValue: Sets the value of the contentType property.
setContentTypeMap(Map<String, String>) - Method in class org.apache.taverna.server.master.TavernaServerSupport: Mapping from filename suffixes (e.g., "baclava") to content types.
setContextualizer(Contextualizer) - Method in class org.apache.taverna.server.master.facade.Facade
setContextualizer(Contextualizer) - Method in class org.apache.taverna.server.master.usage.UsageRecordRecorder
setContextualizer(Contextualizer) - Method in class org.apache.taverna.server.master.utils.WebappAwareDataSource
setCooldownSeconds(int) - Method in class org.apache.taverna.server.master.notification.RateLimitedDispatcher: Set how long must elapse between updates to the status of any particular user.
setCounter(InvocationCounter) - Method in class org.apache.taverna.server.master.admin.AdminBean
setCpuDuration(Duration) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType: Sets the value of the cpuDuration property.
setCreateDate(Date) - Method in class org.apache.taverna.server.master.usage.UsageRecord
setCreateTime(Location) - Method in class org.apache.taverna.server.client.rest.RunDescription: Sets the value of the createTime property.
setCreateTime(XMLGregorianCalendar) - Method in class org.apache.taverna.server.usagerecord.xml.urf.RecordIdentity: Sets the value of the createTime property.
setCreateTime(XMLGregorianCalendar) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.RecordIdentityBlockType: Sets the value of the createTime property.
setCreationWorkflow(Location) - Method in class org.apache.taverna.server.client.rest.RunDescription: Sets the value of the creationWorkflow property.
setCredentialBytes(byte[]) - Method in class org.apache.taverna.server.client.generic.KeyPairCredential: Sets the value of the credentialBytes property.
setCredentialFile(String) - Method in class org.apache.taverna.server.client.generic.KeyPairCredential: Sets the value of the credentialFile property.
setCredentialName(String) - Method in class org.apache.taverna.server.client.generic.KeyPairCredential: Sets the value of the credentialName property.
setCredentials(CredentialCollection) - Method in class org.apache.taverna.server.client.rest.SecurityDescriptor: Sets the value of the credentials property.
setDao(RunDatabaseDAO) - Method in class org.apache.taverna.server.master.identity.WorkflowInternalAuthProvider
setDao(RunDatabaseDAO) - Method in class org.apache.taverna.server.master.worker.RunDatabase
setDefaultExecuteWorkflowScript(String) - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState: Set what executeworkflow script to use by default.
setDefaultLifetime(int) - Method in interface org.apache.taverna.server.master.admin.Admin: Set the default lifetime of workflow runs.
setDefaultLifetime(int) - Method in class org.apache.taverna.server.master.admin.AdminBean
setDefaultLifetime(int) - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: How long will things live? Setter
setDefaultLifetime(int) - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
setDefaultLifetime(int) - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration: Set how long a workflow should live by default.
setDefaultLifetime(int) - Method in interface org.apache.taverna.server.master.worker.WorkerModel
setDefaultLocalUser(String) - Method in class org.apache.taverna.server.master.identity.UserStore
setDelimiter(String) - Method in interface org.apache.taverna.server.localworker.remote.RemoteInput: Sets the delimiter used to split this input port's value into a list.
setDelimiter(String) - Method in interface org.apache.taverna.server.master.interfaces.Input: Sets (or clears) the delimiter for the input port.
setDepth(Integer) - Method in class org.apache.taverna.server.client.port.ErrorValue: Sets the value of the depth property.
setDepth(Integer) - Method in class org.apache.taverna.server.client.port.Port: Sets the value of the depth property.
setDescription(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Charge: Sets the value of the description property.
setDescription(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.ConsumableResourceType: Sets the value of the description property.
setDescription(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.CpuDuration: Sets the value of the description property.
setDescription(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Disk: Sets the value of the description property.
setDescription(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.EndTime: Sets the value of the description property.
setDescription(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Host: Sets the value of the description property.
setDescription(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.JobName: Sets the value of the description property.
setDescription(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.MachineName: Sets the value of the description property.
setDescription(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Memory: Sets the value of the description property.
setDescription(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Network: Sets the value of the description property.
setDescription(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.NodeCount: Sets the value of the description property.
setDescription(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Processors: Sets the value of the description property.
setDescription(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.ProjectName: Sets the value of the description property.
setDescription(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Queue: Sets the value of the description property.
setDescription(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.ResourceType: Sets the value of the description property.
setDescription(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.StartTime: Sets the value of the description property.
setDescription(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Status: Sets the value of the description property.
setDescription(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.SubmitHost: Sets the value of the description property.
setDescription(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Swap: Sets the value of the description property.
setDescription(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.WallDuration: Sets the value of the description property.
setDescription(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.InfrastructureType: Sets the value of the description property.
setDescription(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.QueueType: Sets the value of the description property.
setDescription(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.SubmitTypeType: Sets the value of the description property.
setDescriptorRef(String) - Method in class org.apache.taverna.server.client.rest.InputDescription: Sets the value of the descriptorRef property.
setDestinationAddress(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkOutboundUsedType: Sets the value of the destinationAddress property.
setDestinationField(String) - Method in class org.apache.taverna.server.master.notification.SMSDispatcher
setDestroyers(Set<String>) - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
setDigestMethod(DigestMethodType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ReferenceType: Sets the value of the digestMethod property.
setDigestValue(byte[]) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ReferenceType: Sets the value of the digestValue property.
setDirectoryPath(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Sets the value of the directoryPath property.
setDisableDB(String) - Method in class org.apache.taverna.server.master.usage.UsageRecordRecorder
setDispatchers(List<MessageDispatcher>) - Method in class org.apache.taverna.server.master.notification.NotificationEngine
setEnabledNotificationFabrics(Location) - Method in class org.apache.taverna.server.client.rest.PolicyDescription: Sets the value of the enabledNotificationFabrics property.
setEncoder(PasswordEncoder) - Method in class org.apache.taverna.server.master.identity.UserStore: Install the encoder that will be used to turn a plaintext password into something that it is safe to store in the database.
setEncoding(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectType: Sets the value of the encoding property.
setEndTime(XMLGregorianCalendar) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType: Sets the value of the endTime property.
setEndTime(XMLGregorianCalendar) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType: Sets the value of the endTime property.
setEndTime(XMLGregorianCalendar) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Sets the value of the endTime property.
setError(ErrorValue) - Method in class org.apache.taverna.server.client.port.OutputPort: Sets the value of the error property.
setErrorByteLength(Long) - Method in class org.apache.taverna.server.client.port.ErrorValue: Sets the value of the errorByteLength property.
setErrorFile(String) - Method in class org.apache.taverna.server.client.port.ErrorValue: Sets the value of the errorFile property.
setEventSource(EventDAO) - Method in interface org.apache.taverna.server.master.api.TavernaServerBean
setEventSource(EventDAO) - Method in class org.apache.taverna.server.master.notification.atom.AtomFeed
setEventSource(EventDAO) - Method in class org.apache.taverna.server.master.TavernaServer
setExecuteWorkflowScript(String) - Method in interface org.apache.taverna.server.master.admin.Admin: Set the full pathname of the executeWorkflow.sh file.
setExecuteWorkflowScript(String) - Method in class org.apache.taverna.server.master.admin.AdminBean
setExecuteWorkflowScript(String) - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: How do we start the workflow engine? Setter
setExecuteWorkflowScript(String) - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
setExecuteWorkflowScript(String) - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
setExecuteWorkflowScript(String) - Method in interface org.apache.taverna.server.master.worker.WorkerModel
setExecutionHost(ExecutionHostType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType: Sets the value of the executionHost property.
setExitStatus(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType: Sets the value of the exitStatus property.
setExpected(Location) - Method in class org.apache.taverna.server.client.rest.TavernaRunInputs: Sets the value of the expected property.
setExpiry(RunDescription.Expiry) - Method in class org.apache.taverna.server.client.rest.RunDescription: Sets the value of the expiry property.
setExpiry(Date) - Method in class org.apache.taverna.server.client.Run
setExpiry(Date) - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun: Set when this run will expire.
setExpiry(Date) - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
setExpiryAgeDays(int) - Method in class org.apache.taverna.server.master.notification.atom.EventDAO
setExpiryTime(String) - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Sets the time when the workflow run becomes eligible for automatic deletion.
setExponent(byte[]) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.RSAKeyValueType: Sets the value of the exponent property.
setExtraArgs(String[]) - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
setExtraArgs(String[]) - Method in interface org.apache.taverna.server.master.worker.WorkerModel
setExtraArguments(Admin.StringList) - Method in interface org.apache.taverna.server.master.admin.Admin: Set the extra arguments to be supplied to Java subprocesses.
setExtraArguments(Admin.StringList) - Method in class org.apache.taverna.server.master.admin.AdminBean
setExtraArguments(String[]) - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: How do we start the file system access process? Extra arguments to pass.
setExtraArguments(String[]) - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
setFacade(RunDatabase) - Method in class org.apache.taverna.server.master.worker.RunDatabaseDAO
setFactory(ConfigurableRunFactory) - Method in class org.apache.taverna.server.master.admin.AdminBean
setFactoryProcessNamePrefix(String) - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
setFactoryProcessNamePrefix(String) - Method in interface org.apache.taverna.server.master.worker.WorkerModel
setFeed(Location) - Method in class org.apache.taverna.server.client.rest.ServerDescription: Sets the value of the feed property.
setFeedLanguage(String) - Method in class org.apache.taverna.server.master.notification.atom.AtomFeed
setFile(InputDescription.File) - Method in class org.apache.taverna.server.client.rest.InputDescription: Sets the value of the file property.
setFile(String) - Method in interface org.apache.taverna.server.localworker.remote.RemoteInput: Sets the file to use for this input.
setFile(String) - Method in class org.apache.taverna.server.master.facade.Facade: Set what resource file to use as the template for the response.
setFile(String) - Method in interface org.apache.taverna.server.master.interfaces.Input: Sets the file to use for this input.
setFile(File, String) - Method in class org.apache.taverna.server.master.soap.FileContents: Initialize the contents of this descriptor from the given file and content type.
SetFileContents() - Constructor for class org.apache.taverna.server.master.rest.MakeOrUpdateDirEntry.SetFileContents
setFileContents(List<PathSegment>, InputStream, UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerDirectoryREST: Creates or updates a file in a particular location beneath the working directory of the workflow run.
setFileContentsFromURL(List<PathSegment>, List<URI>, UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerDirectoryREST: Creates or updates a file in a particular location beneath the working directory of the workflow run.
setFileCount(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Sets the value of the fileCount property.
setFilenameConverter(FilenameUtils) - Method in class org.apache.taverna.server.master.worker.SecurityContextFactory
setFileType(String) - Method in class org.apache.taverna.server.client.generic.KeyPairCredential: Sets the value of the fileType property.
setFileType(String) - Method in class org.apache.taverna.server.client.generic.TrustDescriptor: Sets the value of the fileType property.
setFileUtils(FilenameUtils) - Method in interface org.apache.taverna.server.master.api.DirectoryBean
setFileUtils(FilenameUtils) - Method in interface org.apache.taverna.server.master.api.InputBean
setFileUtils(FilenameUtils) - Method in interface org.apache.taverna.server.master.api.TavernaServerBean
setFileUtils(FilenameUtils) - Method in class org.apache.taverna.server.master.ContentsDescriptorBuilder
setFileUtils(FilenameUtils) - Method in class org.apache.taverna.server.master.TavernaServer
setFileUtils(FilenameUtils) - Method in class org.apache.taverna.server.master.TavernaServerSupport
setFinished(boolean) - Method in class org.apache.taverna.server.master.worker.RunConnection
setFinishTime(Location) - Method in class org.apache.taverna.server.client.rest.RunDescription: Sets the value of the finishTime property.
setFormula(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Charge: Sets the value of the formula property.
setFrom(String) - Method in class org.apache.taverna.server.master.notification.EmailDispatcher
setG(byte[]) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.DSAKeyValueType: Sets the value of the g property.
setGenerateProvenance(Location) - Method in class org.apache.taverna.server.client.rest.RunDescription: Sets the value of the generateProvenance property.
setGenerateProvenance(boolean) - Method in class org.apache.taverna.server.localworker.impl.LocalWorker
setGenerateProvenance(boolean) - Method in interface org.apache.taverna.server.localworker.remote.RemoteSingleRun: Sets whether we should generate provenance information from a run.
setGenerateProvenance(String) - Method in interface org.apache.taverna.server.master.admin.Admin: Do we turn on the generate provenance option by default?
setGenerateProvenance(String) - Method in class org.apache.taverna.server.master.admin.AdminBean
setGenerateProvenance(boolean) - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory
setGenerateProvenance(boolean) - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun
setGenerateProvenance(boolean) - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
setGenerateProvenance(boolean) - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST
setGenerateProvenance(boolean) - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
setGenerateProvenance(boolean) - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
setGenerateProvenance(boolean) - Method in interface org.apache.taverna.server.master.worker.WorkerModel
setGenerateRunBundle(boolean) - Method in class org.apache.taverna.server.client.Run
setGlobalGroupId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.SubjectIdentityBlockType: Sets the value of the globalGroupId property.
setGlobalJobId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.JobIdentity: Sets the value of the globalJobId property.
setGlobalJobId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType: Sets the value of the globalJobId property.
setGlobalUserId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.SubjectIdentityBlockType: Sets the value of the globalUserId property.
setGlobalUserName(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.UserIdentity: Sets the value of the globalUserName property.
setGlobalVirtualMachineId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType: Sets the value of the globalVirtualMachineId property.
setHelioToken(String) - Method in interface org.apache.taverna.server.localworker.remote.RemoteSecurityContext
setHost(String) - Method in class org.apache.taverna.server.master.notification.JabberDispatcher
setHost(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Sets the value of the host property.
setHostname(HostnameType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ExecutionHostType: Sets the value of the hostname property.
setHostType(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType: Sets the value of the hostType property.
setHostType(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType: Sets the value of the hostType property.
setHostType(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Sets the value of the hostType property.
setHref(String) - Method in class org.apache.taverna.server.client.generic.CredentialDescriptor: Sets the value of the href property.
setHref(String) - Method in class org.apache.taverna.server.client.generic.DirectoryEntry: Sets the value of the href property.
setHref(String) - Method in class org.apache.taverna.server.client.generic.Location: Sets the value of the href property.
setHref(String) - Method in class org.apache.taverna.server.client.generic.TavernaRun: Sets the value of the href property.
setHref(String) - Method in class org.apache.taverna.server.client.generic.TrustDescriptor: Sets the value of the href property.
setHref(String) - Method in class org.apache.taverna.server.client.port.InputPort: Sets the value of the href property.
setHref(String) - Method in class org.apache.taverna.server.client.port.Value: Sets the value of the href property.
setHref(String) - Method in class org.apache.taverna.server.client.rest.CredentialCollection: Sets the value of the href property.
setHref(String) - Method in class org.apache.taverna.server.client.rest.ListenerDescription: Sets the value of the href property.
setHref(String) - Method in class org.apache.taverna.server.client.rest.RunDescription.Expiry: Sets the value of the href property.
setHref(String) - Method in class org.apache.taverna.server.client.rest.TrustCollection: Sets the value of the href property.
setHttpRealm(String) - Method in class org.apache.taverna.server.master.worker.SecurityContextFactory
setId(String) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Interaction.Id: Duplicate state and set id
setId(String) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.CredentialsId: Duplicate state and set id
setId(String) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.PermissionsId: Duplicate state and set id
setId(String) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.TrustsId: Duplicate state and set id
setId(String) - Method in class org.apache.taverna.server.master.usage.UsageRecord
setId(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.KeyInfoType: Sets the value of the id property.
setId(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ManifestType: Sets the value of the id property.
setId(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectType: Sets the value of the id property.
setId(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ReferenceType: Sets the value of the id property.
setId(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignaturePropertiesType: Sets the value of the id property.
setId(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignaturePropertyType: Sets the value of the id property.
setId(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureType: Sets the value of the id property.
setId(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureValueType: Sets the value of the id property.
setId(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignedInfoType: Sets the value of the id property.
setIdentityMappers(List<LocalIdentityMapper>) - Method in class org.apache.taverna.server.master.identity.CompositeIDMapper
setIdMapper(LocalIdentityMapper) - Method in class org.apache.taverna.server.master.localworker.IdAwareForkRunFactory
setIdMapper(LocalIdentityMapper) - Method in class org.apache.taverna.server.master.TavernaServerSupport
setImageId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType: Sets the value of the imageId property.
setInfrastructure(InfrastructureType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.RecordIdentityBlockType: Sets the value of the infrastructure property.
setInput(String, String) - Method in class org.apache.taverna.server.client.Run
setInput(String, String, char) - Method in class org.apache.taverna.server.client.Run
setInput(String, TavernaServerInputREST.InDesc, UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerInputREST: Set what an input uses to provide data into the workflow run.
setInputBaclavaFile(String) - Method in class org.apache.taverna.server.localworker.impl.LocalWorker
setInputBaclavaFile(String) - Method in interface org.apache.taverna.server.localworker.remote.RemoteSingleRun: Sets the Baclava file to use for all inputs.
setInputBaclavaFile(String) - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun: Sets the Baclava file to use for all inputs.
setInputBaclavaFile(String) - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
setInputs(Location) - Method in class org.apache.taverna.server.client.rest.RunDescription: Sets the value of the inputs property.
setInteraction(Location) - Method in class org.apache.taverna.server.client.rest.RunDescription: Sets the value of the interaction property.
setInteractionFeed(Location) - Method in class org.apache.taverna.server.client.rest.ServerDescription: Sets the value of the interactionFeed property.
setInteractionFeed(String) - Method in class org.apache.taverna.server.master.TavernaServer: The location of a service-wide interaction feed, derived from a properties file.
setInteractionFeedSupport(InteractionFeedSupport) - Method in interface org.apache.taverna.server.master.api.FeedBean
setInteractionFeedSupport(InteractionFeedSupport) - Method in class org.apache.taverna.server.master.InteractionFeed
setInteractionServiceDetails(URL, URL, URL) - Method in class org.apache.taverna.server.localworker.impl.LocalWorker
setInteractionServiceDetails(String, String, String, String) - Method in class org.apache.taverna.server.localworker.impl.TavernaRunManager
setInteractionServiceDetails(String, String, String, String) - Method in interface org.apache.taverna.server.localworker.remote.RemoteRunFactory: Configures the details to use when setting up the workflow run's connnection to the interaction feed.
setInteractionServiceDetails(URL, URL, URL) - Method in interface org.apache.taverna.server.localworker.remote.RemoteSingleRun: Configures the details to use when setting up the workflow run's connnection to the interaction feed.
setInvocationCounter(InvocationCounter) - Method in class org.apache.taverna.server.master.TavernaServerSupport
setJ(byte[]) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.DSAKeyValueType: Sets the value of the j property.
setJavaBinary(String) - Method in interface org.apache.taverna.server.master.admin.Admin: Set the Java binary to be used for execution of subprocesses.
setJavaBinary(String) - Method in class org.apache.taverna.server.master.admin.AdminBean
setJavaBinary(String) - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: Where is Java? Setter
setJavaBinary(String) - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
setJavaBinary(String) - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
setJavaBinary(String) - Method in interface org.apache.taverna.server.master.worker.WorkerModel
setJobIdentity(JobIdentity) - Method in class org.apache.taverna.server.usagerecord.xml.urf.UsageRecordType: Sets the value of the jobIdentity property.
setJobName(String) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
setJobName(JobName) - Method in class org.apache.taverna.server.usagerecord.xml.urf.UsageRecordType: Sets the value of the jobName property.
setJobName(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType: Sets the value of the jobName property.
setJobUsageBlock(JobUsageBlockType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecordType: Sets the value of the jobUsageBlock property.
setKeyInfo(KeyInfoType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureType: Sets the value of the keyInfo property.
setKeyInfo(KeyInfoType) - Method in class org.apache.taverna.server.usagerecord.xml.urf.RecordIdentity: Sets the value of the keyInfo property.
setKeyInfo(KeyInfoType) - Method in class org.apache.taverna.server.usagerecord.xml.urf.UserIdentity: Sets the value of the keyInfo property.
setKeypair(KeyPairCredential) - Method in class org.apache.taverna.server.client.rest.Credential: Sets the value of the keypair property.
setKeystore(byte[]) - Method in interface org.apache.taverna.server.localworker.remote.RemoteSecurityContext
setKeystoreType(String) - Method in class org.apache.taverna.server.master.utils.CertificateChainFetcher
setLength(Integer) - Method in class org.apache.taverna.server.client.port.ListValue: Sets the value of the length property.
setLength(int) - Method in class org.apache.taverna.server.master.worker.PasswordIssuer
setList(ListValue) - Method in class org.apache.taverna.server.client.port.OutputPort: Sets the value of the list property.
setListDelimiter(String) - Method in class org.apache.taverna.server.client.rest.InputDescription: Sets the value of the listDelimiter property.
setListenerFactory(ListenerFactory) - Method in class org.apache.taverna.server.master.TavernaServerSupport
setListeners(RunDescription.Listeners) - Method in class org.apache.taverna.server.client.rest.RunDescription: Sets the value of the listeners property.
setLocalGroupId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.SubjectIdentityBlockType: Sets the value of the localGroupId property.
setLocalJobId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.JobIdentity: Sets the value of the localJobId property.
setLocalJobId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType: Sets the value of the localJobId property.
setLocalUserId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.UserIdentity: Sets the value of the localUserId property.
setLocalUserId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.SubjectIdentityBlockType: Sets the value of the localUserId property.
setLocalVirtualMachineId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType: Sets the value of the localVirtualMachineId property.
setLocalWorkerModel(WorkerModel) - Method in class org.apache.taverna.server.master.admin.AdminBean
setLog(Location) - Method in class org.apache.taverna.server.client.rest.RunDescription: Sets the value of the log property.
setLogFaults(boolean) - Method in interface org.apache.taverna.server.master.admin.Admin: Set whether to log the user-directed faults.
setLogFaults(boolean) - Method in class org.apache.taverna.server.master.admin.AdminBean
setLogFile(String) - Method in class org.apache.taverna.server.master.usage.UsageRecordRecorder
setLogGetPrincipalFailures(boolean) - Method in class org.apache.taverna.server.master.TavernaServerSupport
setLogIncomingWorkflows(boolean) - Method in interface org.apache.taverna.server.master.api.ManagementModel
setLogIncomingWorkflows(boolean) - Method in class org.apache.taverna.server.master.TavernaServerSupport
setLoginTimeout(int) - Method in class org.apache.taverna.server.master.utils.WebappAwareDataSource
setLogOutgoingExceptions(boolean) - Method in interface org.apache.taverna.server.master.api.ManagementModel
setLogOutgoingExceptions(boolean) - Method in class org.apache.taverna.server.master.TavernaServerSupport
setLogWorkflows(boolean) - Method in interface org.apache.taverna.server.master.admin.Admin: Set whether to log the workflows submitted.
setLogWorkflows(boolean) - Method in class org.apache.taverna.server.master.admin.AdminBean
setLogWriter(PrintWriter) - Method in class org.apache.taverna.server.master.utils.WebappAwareDataSource
setMachineName(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType: Sets the value of the machineName property.
setMachineName(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType: Sets the value of the machineName property.
setManagementModel(ManagementModel) - Method in class org.apache.taverna.server.master.rest.handler.HandlerCore
setMaxChunkSize(int) - Method in class org.apache.taverna.server.master.rest.handler.FileConcatenationHandler
setMaxChunkSize(int) - Method in class org.apache.taverna.server.master.rest.handler.FileMessageHandler
setMaxChunkSize(int) - Method in class org.apache.taverna.server.master.rest.handler.FileSegmentHandler
setMaxRuns(int) - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: How much can be done at once? Setter
setMaxRuns(int) - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
setMaxRuns(int) - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
setMaxRuns(int) - Method in interface org.apache.taverna.server.master.worker.WorkerModel
setMemoryClass(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType: Sets the value of the memoryClass property.
setMemoryResourceCapacityAllocated(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType: Sets the value of the memoryResourceCapacityAllocated property.
setMemoryResourceCapacityRequested(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType: Sets the value of the memoryResourceCapacityRequested property.
setMemoryResourceCapacityUsed(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType: Sets the value of the memoryResourceCapacityUsed property.
setMessageContentType(String) - Method in class org.apache.taverna.server.master.notification.EmailDispatcher
setMessageField(String) - Method in class org.apache.taverna.server.master.notification.SMSDispatcher
setMessageFormat(String) - Method in class org.apache.taverna.server.master.worker.SimpleFormattedCompletionNotifier
setMetric(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Disk: Sets the value of the metric property.
setMetric(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Memory: Sets the value of the metric property.
setMetric(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Network: Sets the value of the metric property.
setMetric(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.NodeCount: Sets the value of the metric property.
setMetric(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Processors: Sets the value of the metric property.
setMetric(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Swap: Sets the value of the metric property.
setMimeType(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ObjectType: Sets the value of the mimeType property.
setModulus(byte[]) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.RSAKeyValueType: Sets the value of the modulus property.
setName(String) - Method in class org.apache.taverna.server.client.generic.DirectoryEntry: Sets the value of the name property.
setName(String) - Method in class org.apache.taverna.server.client.port.Port: Sets the value of the name property.
setName(String) - Method in class org.apache.taverna.server.client.rest.FilesystemCreationOperation: Sets the value of the name property.
setName(String) - Method in class org.apache.taverna.server.client.rest.InputDescription: Sets the value of the name property.
setName(String) - Method in class org.apache.taverna.server.client.rest.ListenerDescription: Sets the value of the name property.
setName(String) - Method in class org.apache.taverna.server.client.rest.PropertyDescription: Sets the value of the name property.
setName(Location) - Method in class org.apache.taverna.server.client.rest.RunDescription: Sets the value of the name property.
setName(String) - Method in class org.apache.taverna.server.client.Run
setName(String) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Input.InputName: Duplicate state and set name
setName(String) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name: Duplicate state and set name
setName(String) - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun
setName(String) - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Set the workflow name.
setName(String) - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
setName(String) - Method in class org.apache.taverna.server.master.worker.SimpleFormattedCompletionNotifier
setName(String) - Method in class org.apache.taverna.server.master.worker.VelocityCompletionNotifier
setNetworkClass(NetworkClassType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkUsageBlockType: Sets the value of the networkClass property.
setNetworkInboundUsed(NetworkInboundUsedType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkUsageBlockType: Sets the value of the networkInboundUsed property.
setNetworkOutboundUsed(NetworkOutboundUsedType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkUsageBlockType: Sets the value of the networkOutboundUsed property.
setNetworkResourceBandwidth(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkClassType: Sets the value of the networkResourceBandwidth property.
setNodeCount(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType: Sets the value of the nodeCount property.
setNotificationEngine(NotificationEngine) - Method in interface org.apache.taverna.server.master.api.TavernaServerBean
setNotificationEngine(NotificationEngine) - Method in class org.apache.taverna.server.master.TavernaServer
setNotificationEngine(NotificationEngine) - Method in class org.apache.taverna.server.master.worker.RunDatabase
setNotificationEngine(NotificationEngine) - Method in interface org.apache.taverna.server.master.worker.RunDBSupport
setNotifier(CompletionNotifier) - Method in class org.apache.taverna.server.master.worker.RunDatabase
setNotifier(CompletionNotifier) - Method in interface org.apache.taverna.server.master.worker.RunDBSupport
setOperatingLimit(Location) - Method in class org.apache.taverna.server.client.rest.PolicyDescription: Sets the value of the operatingLimit property.
setOperatingLimit(int) - Method in interface org.apache.taverna.server.master.admin.Admin: Set the maximum number of simultaneous executing runs.
setOperatingLimit(int) - Method in class org.apache.taverna.server.master.admin.AdminBean
setOperatingLimit(int) - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: How many runs can be operating at once? Setter
setOperatingLimit(int) - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
setOperatingLimit(int) - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
setOperatingLimit(int) - Method in interface org.apache.taverna.server.master.worker.WorkerModel
setOutput(Location) - Method in class org.apache.taverna.server.client.rest.RunDescription: Sets the value of the output property.
setOutputBaclavaFile(String) - Method in class org.apache.taverna.server.localworker.impl.LocalWorker
setOutputBaclavaFile(String) - Method in interface org.apache.taverna.server.localworker.remote.RemoteSingleRun: Sets where the output of the run is to be written to.
setOutputBaclavaFile(String) - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun: Sets where the output of the run is to be written to.
setOutputBaclavaFile(String) - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
setOutputFile(String) - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Set the output Baclava file for this workflow run.
setOwner(String) - Method in class org.apache.taverna.server.client.rest.RunDescription: Sets the value of the owner property.
setOwner(String) - Method in class org.apache.taverna.server.client.rest.SecurityDescriptor: Sets the value of the owner property.
setP(byte[]) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.DSAKeyValueType: Sets the value of the p property.
setParticularCredential(String, TavernaServerSecurityREST.CredentialHolder, UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Update a particular credential.
setParticularTrust(String, Trust, UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Update a particular trusted identity.
setPassword(String) - Method in class org.apache.taverna.server.client.generic.PasswordCredential: Sets the value of the password property.
setPassword(char[]) - Method in interface org.apache.taverna.server.localworker.remote.RemoteSecurityContext
setPassword(String) - Method in class org.apache.taverna.server.master.notification.JabberDispatcher
setPassword(String) - Method in class org.apache.taverna.server.master.notification.SMSDispatcher
setPasswordEncoder(PasswordEncoder) - Method in class org.apache.taverna.server.master.identity.StrippedDownAuthProvider: Sets the PasswordEncoder instance to be used to encode and validate passwords.
setPasswordField(String) - Method in class org.apache.taverna.server.master.notification.SMSDispatcher
setPasswordFile(String) - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: Where do we get passwords from? Setter
setPasswordFile(String) - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
setPasswordFile(String) - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
setPasswordFile(String) - Method in interface org.apache.taverna.server.master.worker.WorkerModel
setPasswordIssuer(PasswordIssuer) - Method in class org.apache.taverna.server.master.worker.SecurityContextFactory
setPasswordSource(String) - Method in class org.apache.taverna.server.master.localworker.IdAwareForkRunFactory
setPath(List<String>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path: Duplicate state and set path
setPath(List<String>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path2: Duplicate state and set path
setPath(List<String>) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd.Path3: Duplicate state and set path
setPermission(Permission) - Method in class org.apache.taverna.server.client.rest.LinkedPermissionDescription: Sets the value of the permission property.
setPermission(Permission) - Method in class org.apache.taverna.server.client.rest.PermissionDescription: Sets the value of the permission property.
setPermission(String, Permission) - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Update the permission granted to a user.
setPermission(TavernaSecurityContext, String, Permission) - Method in class org.apache.taverna.server.master.TavernaServerSupport: Set the permissions for the given user.
setPermissions(Location) - Method in class org.apache.taverna.server.client.rest.SecurityDescriptor: Sets the value of the permissions property.
setPermittedDestroyers(Set<String>) - Method in interface org.apache.taverna.server.master.interfaces.TavernaSecurityContext: Sets the collection of names of users (as extracted from their Principal objects) that may destroy the run or manipulate its lifetime.
setPermittedDestroyers(Set<String>) - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate
setPermittedListenerTypes(Location) - Method in class org.apache.taverna.server.client.rest.PolicyDescription: Sets the value of the permittedListenerTypes property.
setPermittedReaders(Set<String>) - Method in interface org.apache.taverna.server.master.interfaces.TavernaSecurityContext: Sets the collection of names of users (as extracted from their Principal objects) that may read from the run (including its files).
setPermittedReaders(Set<String>) - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate
setPermittedUpdaters(Set<String>) - Method in interface org.apache.taverna.server.master.interfaces.TavernaSecurityContext: Sets the collection of names of users (as extracted from their Principal objects) that may update the run (including writing to its files).
setPermittedUpdaters(Set<String>) - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate
setPermittedWorkflows(Location) - Method in class org.apache.taverna.server.client.rest.PolicyDescription: Sets the value of the permittedWorkflows property.
setPermittedWorkflowURIs(Admin.StringList) - Method in interface org.apache.taverna.server.master.admin.Admin: What are the current list of workflow URIs that may be started? Empty means allow any, including user-supplied workflows.
setPermittedWorkflowURIs(Admin.StringList) - Method in class org.apache.taverna.server.master.admin.AdminBean
setPermittedWorkflowURIs(UsernamePrincipal, List<URI>) - Method in interface org.apache.taverna.server.master.interfaces.Policy: Set the URIs of the workflows that the given user may execute.
setPermittedWorkflowURIs(List<URI>) - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
setPermittedWorkflowURIs(URI[]) - Method in class org.apache.taverna.server.master.TavernaServerSupport
setPermittedWorkflowURIs(List<URI>) - Method in interface org.apache.taverna.server.master.worker.PolicyLimits
setPermittedWorkflowURIs(List<URI>) - Method in interface org.apache.taverna.server.master.worker.WorkerModel
setPersistenceManagerBuilder(JDOSupport.PersistenceManagerBuilder) - Method in class org.apache.taverna.server.master.utils.JDOSupport
setPersistenceManagerFactory(PersistenceManagerFactory) - Method in class org.apache.taverna.server.master.utils.JDOSupport.PersistenceManagerBuilder
setPgenCounter(byte[]) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.DSAKeyValueType: Sets the value of the pgenCounter property.
setPhaseUnit(Duration) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Disk: Sets the value of the phaseUnit property.
setPhaseUnit(Duration) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Memory: Sets the value of the phaseUnit property.
setPhaseUnit(Duration) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Network: Sets the value of the phaseUnit property.
setPhaseUnit(Duration) - Method in class org.apache.taverna.server.usagerecord.xml.urf.PhaseResource: Sets the value of the phaseUnit property.
setPhaseUnit(Duration) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Swap: Sets the value of the phaseUnit property.
setPolicy(Location) - Method in class org.apache.taverna.server.client.rest.ServerDescription: Sets the value of the policy property.
setPolicy(Policy) - Method in interface org.apache.taverna.server.master.api.TavernaServerBean
setPolicy(Policy) - Method in class org.apache.taverna.server.master.TavernaServer
setPolicy(Policy) - Method in class org.apache.taverna.server.master.TavernaServerSupport
setPortMapper(PortMapper) - Method in class org.apache.taverna.server.master.common.Uri.Rewriter
setPrefix(String) - Method in class org.apache.taverna.server.master.identity.AuthorityDerivedIDMapper
setPrimary(Boolean) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Host: Sets the value of the primary property.
setPrimary(Boolean) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.HostnameType: Sets the value of the primary property.
setProcessors(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType: Sets the value of the processors property.
setProperties(ListenerDescription.Properties) - Method in class org.apache.taverna.server.client.rest.ListenerDescription: Sets the value of the properties property.
setProperty(String, String) - Method in class org.apache.taverna.server.localworker.impl.WorkerCore
setProperty(String, String) - Method in interface org.apache.taverna.server.localworker.remote.RemoteListener: Set the value of a particular property, which should be listed in the RemoteListener.listProperties() method.
setProperty(String, String) - Method in interface org.apache.taverna.server.master.interfaces.Listener: Set the value of a particular property, which should be listed in the Listener.listProperties() method.
setPropertyname(String) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Listeners.Name.PropertiesPropertyName: Duplicate state and set propertyName
setProtocol(String) - Method in class org.apache.taverna.server.master.utils.CertificateChainFetcher
setProvenanceGenerated(boolean) - Method in class org.apache.taverna.server.master.worker.RunConnection
setQ(byte[]) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.DSAKeyValueType: Sets the value of the q property.
setQueue(QueueType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType: Sets the value of the queue property.
setReaders(Set<String>) - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
setRealStore(UserStore) - Method in class org.apache.taverna.server.master.identity.UserStore.CachedUserStore
setRecordId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.RecordIdentity: Sets the value of the recordId property.
setRecordId(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.RecordIdentityBlockType: Sets the value of the recordId property.
setRecordIdentity(RecordIdentity) - Method in class org.apache.taverna.server.usagerecord.xml.urf.UsageRecordType: Sets the value of the recordIdentity property.
setRecordIdentityBlock(RecordIdentityBlockType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecordType: Sets the value of the recordIdentityBlock property.
setReference(InputDescription.Reference) - Method in class org.apache.taverna.server.client.rest.InputDescription: Sets the value of the reference property.
setRegexp(String) - Method in class org.apache.taverna.server.master.identity.NameIDMapper
setRegistrationPollMillis(int) - Method in interface org.apache.taverna.server.master.admin.Admin: Set the interval between checks for registration of the forker process.
setRegistrationPollMillis(int) - Method in class org.apache.taverna.server.master.admin.AdminBean
setRegistrationWaitSeconds(int) - Method in interface org.apache.taverna.server.master.admin.Admin: Set the total duration of time to wait for the start of the forker process.
setRegistrationWaitSeconds(int) - Method in class org.apache.taverna.server.master.admin.AdminBean
setRegistryHost(String) - Method in interface org.apache.taverna.server.master.admin.Admin: Set the location of the RMI registry.
setRegistryHost(String) - Method in class org.apache.taverna.server.master.admin.AdminBean
setRegistryHost(String) - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: Where is the registry? Setter
setRegistryHost(String) - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
setRegistryHost(String) - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
setRegistryHost(String) - Method in interface org.apache.taverna.server.master.worker.WorkerModel
setRegistryJar(String) - Method in interface org.apache.taverna.server.master.admin.Admin: Set the full pathname of the RMI registry's JAR.
setRegistryJar(String) - Method in class org.apache.taverna.server.master.admin.AdminBean
setRegistryJar(String) - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
setRegistryJar(String) - Method in interface org.apache.taverna.server.master.worker.WorkerModel
setRegistryPort(int) - Method in interface org.apache.taverna.server.master.admin.Admin: Set the port of the RMI registry.
setRegistryPort(int) - Method in class org.apache.taverna.server.master.admin.AdminBean
setRegistryPort(int) - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: Where is the registry? Setter
setRegistryPort(int) - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
setRegistryPort(int) - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
setRegistryPort(int) - Method in interface org.apache.taverna.server.master.worker.WorkerModel
setResource(String) - Method in class org.apache.taverna.server.master.notification.JabberDispatcher
setResourceRoot(String) - Method in class org.apache.taverna.server.master.admin.AdminBean
setRewriteRegexp(String) - Method in class org.apache.taverna.server.master.common.Uri.Rewriter
setRewriteTarget(String) - Method in class org.apache.taverna.server.master.common.Uri.Rewriter: What to rewrite the host, port and web-app name to be.
setRmiRegistryJar(String) - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: How do we start the RMI registry process? Setter
setRmiRegistryJar(String) - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
setRun(TavernaRun) - Method in interface org.apache.taverna.server.master.api.RunBean
setRunasPasswordFile(String) - Method in interface org.apache.taverna.server.master.admin.Admin: Set the full pathname of the file containing the impersonation credentials for the forker process.
setRunasPasswordFile(String) - Method in class org.apache.taverna.server.master.admin.AdminBean
setRunBundle(Location) - Method in class org.apache.taverna.server.client.rest.RunDescription: Sets the value of the runBundle property.
setRunCertificates(String, String, Trust) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Set a certificate collection associated with the run.
setRunCertificates(String, String, Trust) - Method in class org.apache.taverna.server.master.TavernaServer
setRunCredential(String, String, Credential) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Set a credential associated with the run.
setRunCredential(String, String, Credential) - Method in class org.apache.taverna.server.master.TavernaServer
setRunDatabase(RunDBSupport) - Method in class org.apache.taverna.server.master.worker.SecurityContextFactory
setRunDB(RunDBSupport) - Method in class org.apache.taverna.server.master.admin.AdminBean
setRunDescriptiveName(String, String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Set the descriptive name of the workflow run.
setRunDescriptiveName(String, String) - Method in class org.apache.taverna.server.master.TavernaServer
setRunExpiry(String, Date) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Set when the run will be eligible to be automatically deleted.
setRunExpiry(String, Date) - Method in class org.apache.taverna.server.master.TavernaServer
setRunFactory(RunFactory) - Method in class org.apache.taverna.server.master.TavernaServerSupport
setRunFileContents(String, DirEntry, byte[]) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Set the contents of a file under the run's working directory.
setRunFileContents(String, DirEntry, byte[]) - Method in class org.apache.taverna.server.master.TavernaServer
setRunFileContentsFromURI(String, DirEntryReference, URI) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Set the contents of a file under the run's working directory to the contents of a publicly readable URI.
setRunFileContentsFromURI(String, DirEntryReference, URI) - Method in class org.apache.taverna.server.master.TavernaServer
setRunFileContentsMTOM(String, FileContents) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Set the contents of a file under the run's working directory.
setRunFileContentsMTOM(String, FileContents) - Method in class org.apache.taverna.server.master.TavernaServer
setRunGenerateProvenance(String, boolean) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Sets whether to generate provenance (in a run bundle) for a run.
setRunGenerateProvenance(String, boolean) - Method in class org.apache.taverna.server.master.TavernaServer
setRunInputBaclavaFile(String, String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Tells the run to use the given Baclava file for all inputs.
setRunInputBaclavaFile(String, String) - Method in class org.apache.taverna.server.master.TavernaServer
setRunInputPortFile(String, String, String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Tells the run to use the given file for input on the given port.
setRunInputPortFile(String, String, String) - Method in class org.apache.taverna.server.master.TavernaServer
setRunInputPortListDelimiter(String, String, String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Tells the given run to use the given list delimiter (a single-character string value) for splitting the input on the given port.
setRunInputPortListDelimiter(String, String, String) - Method in class org.apache.taverna.server.master.TavernaServer
setRunInputPortValue(String, String, String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Tells the run to use the given value for input on the given port.
setRunInputPortValue(String, String, String) - Method in class org.apache.taverna.server.master.TavernaServer
setRunLimit(Location) - Method in class org.apache.taverna.server.client.rest.PolicyDescription: Sets the value of the runLimit property.
setRunLimit(int) - Method in interface org.apache.taverna.server.master.admin.Admin: Set the maximum number of simultaneous runs.
setRunLimit(int) - Method in class org.apache.taverna.server.master.admin.AdminBean
setRunListenerProperty(String, String, String, String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Set the value of a property for an event listener attached to a run.
setRunListenerProperty(String, String, String, String) - Method in class org.apache.taverna.server.master.TavernaServer
setRunname(String) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName: Duplicate state and set runName
setRunName(String) - Method in interface org.apache.taverna.server.master.api.RunBean
setRunOutputBaclavaFile(String, String) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Set the Baclava file where the output of the run will be written.
setRunOutputBaclavaFile(String, String) - Method in class org.apache.taverna.server.master.TavernaServer
setRunPermission(String, String, Permission) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Set the permission for a user to access and update a particular workflow run.
setRunPermission(String, String, Permission) - Method in class org.apache.taverna.server.master.TavernaServer
setRuns(Location) - Method in class org.apache.taverna.server.client.rest.ServerDescription: Sets the value of the runs property.
setRunStatus(String, Status) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Set the status of a run.
setRunStatus(String, Status) - Method in class org.apache.taverna.server.master.TavernaServer
setRunStore(RunStore) - Method in interface org.apache.taverna.server.master.api.TavernaServerBean
setRunStore(RunStore) - Method in class org.apache.taverna.server.master.identity.WorkflowInternalAuthProvider.WorkflowSelfIDMapper
setRunStore(RunStore) - Method in class org.apache.taverna.server.master.TavernaServer
setRunStore(RunStore) - Method in class org.apache.taverna.server.master.TavernaServerSupport
setSecure(boolean) - Method in class org.apache.taverna.server.master.utils.CertificateChainFetcher
setSecurityContext(Location) - Method in class org.apache.taverna.server.client.rest.RunDescription: Sets the value of the securityContext property.
setSecurityContext(TavernaSecurityContext) - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
setSeed(byte[]) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.DSAKeyValueType: Sets the value of the seed property.
setSelf(LocalWorkerState) - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
setSelf(EventDAO) - Method in class org.apache.taverna.server.master.notification.atom.EventDAO
setSelf(UsageRecordRecorder) - Method in class org.apache.taverna.server.master.usage.UsageRecordRecorder
setSender(MailSender) - Method in class org.apache.taverna.server.master.notification.EmailDispatcher
setServerBuildTimestamp(String) - Method in class org.apache.taverna.server.client.generic.VersionedElement: Sets the value of the serverBuildTimestamp property.
setServerForkerJar(String) - Method in interface org.apache.taverna.server.master.admin.Admin: Set the full pathname of the forker's JAR.
setServerForkerJar(String) - Method in class org.apache.taverna.server.master.admin.AdminBean
setServerForkerJar(String) - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: How do we switch users? Setter
setServerForkerJar(String) - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
setServerForkerJar(String) - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
setServerForkerJar(String) - Method in interface org.apache.taverna.server.master.worker.WorkerModel
setServerRevision(String) - Method in class org.apache.taverna.server.client.generic.VersionedElement: Sets the value of the serverRevision property.
setServerVersion(String) - Method in class org.apache.taverna.server.client.generic.TavernaRun: Sets the value of the serverVersion property.
setServerVersion(String) - Method in class org.apache.taverna.server.client.generic.VersionedElement: Sets the value of the serverVersion property.
setServerWorkerJar(String) - Method in interface org.apache.taverna.server.master.admin.Admin: Set the full pathname of the worker JAR file.
setServerWorkerJar(String) - Method in class org.apache.taverna.server.master.admin.AdminBean
setServerWorkerJar(String) - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: How do we start the file system access process? Setter
setServerWorkerJar(String) - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
setServerWorkerJar(String) - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
setServerWorkerJar(String) - Method in interface org.apache.taverna.server.master.worker.WorkerModel
setService(String) - Method in class org.apache.taverna.server.master.notification.SMSDispatcher
setServiceLevel(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType: Sets the value of the serviceLevel property.
setServiceLevel(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType: Sets the value of the serviceLevel property.
setServiceURI(String) - Method in class org.apache.taverna.server.client.generic.CredentialDescriptor: Sets the value of the serviceURI property.
setServletContext(ServletContext) - Method in class org.apache.taverna.server.master.notification.atom.AtomFeed
setServletContext(ServletContext) - Method in class org.apache.taverna.server.master.utils.Contextualizer
setShutdownUrl(String) - Method in class org.apache.taverna.server.master.utils.WebappAwareDataSource: A JDBC connection URL to use on shutting down the database.
setSignatureMethod(SignatureMethodType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignedInfoType: Sets the value of the signatureMethod property.
setSignatureValue(SignatureValueType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureType: Sets the value of the signatureValue property.
setSignedInfo(SignedInfoType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureType: Sets the value of the signedInfo property.
setSite(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.RecordIdentityBlockType: Sets the value of the site property.
setSleepMS(int) - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
setSleepMS(int) - Method in interface org.apache.taverna.server.master.worker.WorkerModel
setSleepTime(int) - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: How often do we probe for info? Setter
setSleepTime(int) - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
setSmtpHost(String) - Method in class org.apache.taverna.server.master.notification.EmailDispatcher
setSourceAddress(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkInboundUsedType: Sets the value of the sourceAddress property.
setStartTime(Location) - Method in class org.apache.taverna.server.client.rest.RunDescription: Sets the value of the startTime property.
setStartTime(XMLGregorianCalendar) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType: Sets the value of the startTime property.
setStartTime(XMLGregorianCalendar) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType: Sets the value of the startTime property.
setStartTime(XMLGregorianCalendar) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Sets the value of the startTime property.
setState(ManagementModel) - Method in class org.apache.taverna.server.master.admin.AdminBean
setState(ManagementModel) - Method in class org.apache.taverna.server.master.usage.UsageRecordRecorder
setStateModel(ManagementModel) - Method in class org.apache.taverna.server.master.TavernaServerSupport
setStatus(Location) - Method in class org.apache.taverna.server.client.rest.RunDescription: Sets the value of the status property.
setStatus(Status) - Method in class org.apache.taverna.server.client.Run
setStatus(RemoteStatus) - Method in class org.apache.taverna.server.localworker.impl.LocalWorker
setStatus(RemoteStatus) - Method in interface org.apache.taverna.server.localworker.remote.RemoteSingleRun: Set the status of the run, which should cause it to move into the given state.
setStatus(Status) - Method in interface org.apache.taverna.server.master.interfaces.TavernaRun: Set the status of the run, which should cause it to move into the given state.
setStatus(String) - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Sets the status of the workflow run.
setStatus(Status) - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
setStatus(String) - Method in class org.apache.taverna.server.usagerecord.JobUsageRecord
setStatus(Status) - Method in class org.apache.taverna.server.usagerecord.xml.urf.UsageRecordType: Sets the value of the status property.
setStatus(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType: Sets the value of the status property.
setStatus(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType: Sets the value of the status property.
setStderr(Location) - Method in class org.apache.taverna.server.client.rest.RunDescription: Sets the value of the stderr property.
setStdout(Location) - Method in class org.apache.taverna.server.client.rest.RunDescription: Sets the value of the stdout property.
setStorageClass(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Sets the value of the storageClass property.
setStorageLogicalCapacityUsed(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Sets the value of the storageLogicalCapacityUsed property.
setStorageMedia(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Sets the value of the storageMedia property.
setStorageResourceCapacityAllocated(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Sets the value of the storageResourceCapacityAllocated property.
setStorageResourceCapacityUsed(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Sets the value of the storageResourceCapacityUsed property.
setStorageShare(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType: Sets the value of the storageShare property.
setStorageUnit(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Disk: Sets the value of the storageUnit property.
setStorageUnit(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Memory: Sets the value of the storageUnit property.
setStorageUnit(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Network: Sets the value of the storageUnit property.
setStorageUnit(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Swap: Sets the value of the storageUnit property.
setStorageUnit(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.VolumeResource: Sets the value of the storageUnit property.
setSubject(String) - Method in class org.apache.taverna.server.master.worker.SimpleFormattedCompletionNotifier
setSubject(String) - Method in class org.apache.taverna.server.master.worker.VelocityCompletionNotifier
setSubjectIdentityBlock(SubjectIdentityBlockType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecordType: Sets the value of the subjectIdentityBlock property.
setSubmitHost(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType: Sets the value of the submitHost property.
setSubmitHost(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType: Sets the value of the submitHost property.
setSubmitType(SubmitTypeType) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType: Sets the value of the submitType property.
setSupport(TavernaServerSupport) - Method in interface org.apache.taverna.server.master.api.SupportAware: How to tell the bean about the support bean.
setSupport(TavernaServerSupport) - Method in interface org.apache.taverna.server.master.api.TavernaServerBean
setSupport(TavernaServerSupport) - Method in class org.apache.taverna.server.master.interaction.InteractionFeedSupport
setSupport(TavernaServerSupport) - Method in class org.apache.taverna.server.master.notification.atom.AtomFeed
setSupport(TavernaServerSupport) - Method in class org.apache.taverna.server.master.TavernaServer
setSuppressSecurity(boolean) - Method in class org.apache.taverna.server.master.common.Uri.Rewriter: Whether to suppress rewriting of URIs to be secure.
setSuspendDuration(Duration) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType: Sets the value of the suspendDuration property.
setTarget(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignaturePropertyType: Sets the value of the target property.
setThreshold(long) - Method in class org.apache.taverna.server.master.utils.CallTimeLogger
setTimeout(int) - Method in class org.apache.taverna.server.master.utils.CertificateChainFetcher
setTransforms(TransformsType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ReferenceType: Sets the value of the transforms property.
setTransforms(TransformsType) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.RetrievalMethodType: Sets the value of the transforms property.
setTrusts(TrustCollection) - Method in class org.apache.taverna.server.client.rest.SecurityDescriptor: Sets the value of the trusts property.
setTruststore(byte[]) - Method in interface org.apache.taverna.server.localworker.remote.RemoteSecurityContext
setType(String) - Method in class org.apache.taverna.server.client.rest.ListenerDefinition: Sets the value of the type property.
setType(String) - Method in class org.apache.taverna.server.client.rest.ListenerDescription: Sets the value of the type property.
setType(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ReferenceType: Sets the value of the type property.
setType(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.RetrievalMethodType: Sets the value of the type property.
setType(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Disk: Sets the value of the type property.
setType(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Memory: Sets the value of the type property.
setType(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.ServiceLevel: Sets the value of the type property.
setType(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Swap: Sets the value of the type property.
setType(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.TimeDuration: Sets the value of the type property.
setType(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.TimeInstant: Sets the value of the type property.
setType(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.BenchmarkType: Sets the value of the type property.
setType(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.GlobalGroupAttributeType: Sets the value of the type property.
setType(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.TimeInstantType: Sets the value of the type property.
setTypeNotifiers(List<CompletionNotifier>) - Method in class org.apache.taverna.server.master.worker.RunDatabase
setUnit(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Charge: Sets the value of the unit property.
setUnits(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.ConsumableResourceType: Sets the value of the units property.
setUniversalDispatchers(List<MessageDispatcher>) - Method in class org.apache.taverna.server.master.notification.NotificationEngine
setUnlockPassword(String) - Method in class org.apache.taverna.server.client.generic.KeyPairCredential: Sets the value of the unlockPassword property.
setURFile(String) - Method in interface org.apache.taverna.server.master.admin.Admin: Set what file to dump usage records to.
setURFile(String) - Method in class org.apache.taverna.server.master.admin.AdminBean
setURI(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.ReferenceType: Sets the value of the uri property.
setURI(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.RetrievalMethodType: Sets the value of the uri property.
setUriBuilder(UriBuilderFactory) - Method in class org.apache.taverna.server.master.interaction.InteractionFeedSupport
setUriBuilderFactory(UriBuilderFactory) - Method in class org.apache.taverna.server.master.ContentsDescriptorBuilder
setUriBuilderFactory(UriBuilderFactory) - Method in class org.apache.taverna.server.master.notification.atom.EventDAO
setUriBuilderFactory(UriBuilderFactory) - Method in class org.apache.taverna.server.master.worker.VelocityCompletionNotifier
setUriSource(UriBuilderFactory) - Method in class org.apache.taverna.server.master.worker.SecurityContextFactory
setUriToAliasMap(Map<URI, String>) - Method in interface org.apache.taverna.server.localworker.remote.RemoteSecurityContext
setURReceiver(UsageRecordReceiver) - Method in interface org.apache.taverna.server.localworker.api.Worker
setURReceiver(UsageRecordReceiver) - Method in class org.apache.taverna.server.localworker.impl.WorkerCore
setUsage(Location) - Method in class org.apache.taverna.server.client.rest.RunDescription: Sets the value of the usage property.
setUsageRecord(String) - Method in class org.apache.taverna.server.master.usage.UsageRecord
setUsageRecordLogFile(String) - Method in interface org.apache.taverna.server.master.api.ManagementModel
setUsageRecords(UsageRecordRecorder) - Method in class org.apache.taverna.server.master.admin.AdminBean
setUsageType(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.CpuDuration: Sets the value of the usageType property.
setUser(String) - Method in class org.apache.taverna.server.master.notification.SMSDispatcher
setUserAdmin(String, boolean) - Method in class org.apache.taverna.server.master.identity.UserStore
setUserAdmin(String, boolean) - Method in interface org.apache.taverna.server.master.identity.UserStoreAPI: Set or clear the mark on an account that indicates that it has administrative privileges.
setUserDetailsService(UserDetailsService) - Method in class org.apache.taverna.server.master.identity.StrippedDownAuthProvider
setUserEnabled(String, boolean) - Method in class org.apache.taverna.server.master.identity.UserStore
setUserEnabled(String, boolean) - Method in interface org.apache.taverna.server.master.identity.UserStoreAPI: Set or clear whether this account is enabled.
setUserid(String) - Method in class org.apache.taverna.server.master.usage.UsageRecord
setUserLocalUser(String, String) - Method in class org.apache.taverna.server.master.identity.UserStore
setUserLocalUser(String, String) - Method in interface org.apache.taverna.server.master.identity.UserStoreAPI: Change what local system account to use for a server account.
setUsername(String) - Method in class org.apache.taverna.server.client.generic.PasswordCredential: Sets the value of the username property.
setUserName(String) - Method in class org.apache.taverna.server.client.rest.LinkedPermissionDescription: Sets the value of the userName property.
setUserName(String) - Method in class org.apache.taverna.server.client.rest.PermissionDescription: Sets the value of the userName property.
setUsername(String) - Method in class org.apache.taverna.server.master.notification.JabberDispatcher
setUsernameField(String) - Method in class org.apache.taverna.server.master.notification.SMSDispatcher
setUserpass(PasswordCredential) - Method in class org.apache.taverna.server.client.rest.Credential: Sets the value of the userpass property.
setUserPassword(String, String) - Method in class org.apache.taverna.server.master.identity.UserStore
setUserPassword(String, String) - Method in interface org.apache.taverna.server.master.identity.UserStoreAPI: Change the password for an account.
setUserStore(UserStoreAPI) - Method in class org.apache.taverna.server.master.admin.AdminBean
setUtils(FilenameUtils) - Method in class org.apache.taverna.server.master.interaction.InteractionFeedSupport
setValue(String) - Method in class org.apache.taverna.server.client.generic.DirectoryEntry: Sets the value of the value property.
setValue(String) - Method in class org.apache.taverna.server.client.generic.TavernaRun: Sets the value of the value property.
setValue(LeafValue) - Method in class org.apache.taverna.server.client.port.OutputPort: Sets the value of the value property.
setValue(byte[]) - Method in class org.apache.taverna.server.client.rest.FilesystemCreationOperation: Sets the value of the value property.
setValue(String) - Method in class org.apache.taverna.server.client.rest.InputDescription.File: Sets the value of the value property.
setValue(String) - Method in class org.apache.taverna.server.client.rest.InputDescription.Reference: Sets the value of the value property.
setValue(InputDescription.Value) - Method in class org.apache.taverna.server.client.rest.InputDescription: Sets the value of the value property.
setValue(String) - Method in class org.apache.taverna.server.client.rest.InputDescription.Value: Sets the value of the value property.
setValue(String) - Method in class org.apache.taverna.server.client.rest.ListenerDefinition: Sets the value of the value property.
setValue(String) - Method in class org.apache.taverna.server.client.rest.RunDescription.Expiry: Sets the value of the value property.
setValue(String) - Method in interface org.apache.taverna.server.localworker.remote.RemoteInput: Sets the value to use for this input.
setValue(String) - Method in interface org.apache.taverna.server.master.interfaces.Input: Sets the value to use for this input.
setValue(String) - Method in interface org.apache.taverna.server.master.rest.TavernaServerListenersREST.Property: Set the value of the particular property of an event listener attached to a workflow run.
setValue(byte[]) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureValueType: Sets the value of the value property.
setValue(float) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Charge: Sets the value of the value property.
setValue(float) - Method in class org.apache.taverna.server.usagerecord.xml.urf.ConsumableResourceType: Sets the value of the value property.
setValue(Duration) - Method in class org.apache.taverna.server.usagerecord.xml.urf.CpuDuration: Sets the value of the value property.
setValue(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Disk: Sets the value of the value property.
setValue(XMLGregorianCalendar) - Method in class org.apache.taverna.server.usagerecord.xml.urf.EndTime: Sets the value of the value property.
setValue(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Host: Sets the value of the value property.
setValue(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.JobName: Sets the value of the value property.
setValue(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.MachineName: Sets the value of the value property.
setValue(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Memory: Sets the value of the value property.
setValue(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Network: Sets the value of the value property.
setValue(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf.NodeCount: Sets the value of the value property.
setValue(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Processors: Sets the value of the value property.
setValue(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.ProjectName: Sets the value of the value property.
setValue(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Queue: Sets the value of the value property.
setValue(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.ResourceType: Sets the value of the value property.
setValue(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.ServiceLevel: Sets the value of the value property.
setValue(XMLGregorianCalendar) - Method in class org.apache.taverna.server.usagerecord.xml.urf.StartTime: Sets the value of the value property.
setValue(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Status: Sets the value of the value property.
setValue(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf.SubmitHost: Sets the value of the value property.
setValue(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf.Swap: Sets the value of the value property.
setValue(Duration) - Method in class org.apache.taverna.server.usagerecord.xml.urf.TimeDuration: Sets the value of the value property.
setValue(XMLGregorianCalendar) - Method in class org.apache.taverna.server.usagerecord.xml.urf.TimeInstant: Sets the value of the value property.
setValue(Duration) - Method in class org.apache.taverna.server.usagerecord.xml.urf.WallDuration: Sets the value of the value property.
setValue(float) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.BenchmarkType: Sets the value of the value property.
setValue(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.GlobalGroupAttributeType: Sets the value of the value property.
setValue(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.HostnameType: Sets the value of the value property.
setValue(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.InfrastructureType: Sets the value of the value property.
setValue(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkClassType: Sets the value of the value property.
setValue(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkInboundUsedType: Sets the value of the value property.
setValue(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkOutboundUsedType: Sets the value of the value property.
setValue(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.QueueType: Sets the value of the value property.
setValue(String) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.SubmitTypeType: Sets the value of the value property.
setValue(XMLGregorianCalendar) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.TimeInstantType: Sets the value of the value property.
setVelocityEngine(VelocityEngine) - Method in class org.apache.taverna.server.master.worker.VelocityCompletionNotifier
setVersion(String) - Method in class org.apache.taverna.server.client.generic.Capability: Sets the value of the version property.
setWaitSeconds(int) - Method in interface org.apache.taverna.server.master.factories.ConfigurableRunFactory: How long do we allow for actions? Setter
setWaitSeconds(int) - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
setWaitSeconds(int) - Method in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
setWaitSeconds(int) - Method in interface org.apache.taverna.server.master.worker.WorkerModel
setWallDuration(Duration) - Method in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType: Sets the value of the wallDuration property.
setWebapp(TavernaServerBean) - Method in class org.apache.taverna.server.master.TavernaServerSupport
setWorkflow(Workflow) - Method in class org.apache.taverna.server.master.soap.WrappedWorkflow: Initialize the contents of this descriptor from the given file and content type.
setWorkflowId(String) - Method in class org.apache.taverna.server.client.port.PortDescription: Sets the value of the workflowId property.
setWorkflowRun(String) - Method in class org.apache.taverna.server.client.port.PortDescription: Sets the value of the workflowRun property.
setWorkflowRunId(String) - Method in class org.apache.taverna.server.client.port.PortDescription: Sets the value of the workflowRunId property.
setWorkingDirectory(Location) - Method in class org.apache.taverna.server.client.rest.RunDescription: Sets the value of the workingDirectory property.
setWriters(Set<String>) - Method in class org.apache.taverna.server.master.worker.RemoteRunDelegate
setX500Utils(X500Utils) - Method in class org.apache.taverna.server.master.worker.SecurityContextFactory
setX509IssuerName(String) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.X509IssuerSerialType: Sets the value of the x509IssuerName property.
setX509SerialNumber(BigInteger) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.X509IssuerSerialType: Sets the value of the x509SerialNumber property.
setY(byte[]) - Method in class org.apache.taverna.server.usagerecord.xml.dsig.DSAKeyValueType: Sets the value of the y property.
SHARED_DIR_PROP - Static variable in class org.apache.taverna.server.localworker.api.Constants: The name of the property describing where shared directories should be located.
shutdown() - Method in class org.apache.taverna.server.localworker.impl.TavernaRunManager
shutdown() - Method in interface org.apache.taverna.server.localworker.remote.RemoteRunFactory: Asks this factory to unregister itself from the registry and cease operation.
signatureMethod - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.SignedInfoType
SignatureMethodType - Class in org.apache.taverna.server.usagerecord.xml.dsig: Java class for SignatureMethodType complex type.
SignatureMethodType() - Constructor for class org.apache.taverna.server.usagerecord.xml.dsig.SignatureMethodType
SignaturePropertiesType - Class in org.apache.taverna.server.usagerecord.xml.dsig: Java class for SignaturePropertiesType complex type.
SignaturePropertiesType() - Constructor for class org.apache.taverna.server.usagerecord.xml.dsig.SignaturePropertiesType
signatureProperty - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.SignaturePropertiesType
SignaturePropertyType - Class in org.apache.taverna.server.usagerecord.xml.dsig: Java class for SignaturePropertyType complex type.
SignaturePropertyType() - Constructor for class org.apache.taverna.server.usagerecord.xml.dsig.SignaturePropertyType
SignatureType - Class in org.apache.taverna.server.usagerecord.xml.dsig: Java class for SignatureType complex type.
SignatureType() - Constructor for class org.apache.taverna.server.usagerecord.xml.dsig.SignatureType
signatureValue - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureType
SignatureValueType - Class in org.apache.taverna.server.usagerecord.xml.dsig: Java class for SignatureValueType complex type.
SignatureValueType() - Constructor for class org.apache.taverna.server.usagerecord.xml.dsig.SignatureValueType
signedInfo - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureType
SignedInfoType - Class in org.apache.taverna.server.usagerecord.xml.dsig: Java class for SignedInfoType complex type.
SignedInfoType() - Constructor for class org.apache.taverna.server.usagerecord.xml.dsig.SignedInfoType
SimpleFormattedCompletionNotifier - Class in org.apache.taverna.server.master.worker: Completion notifier that sends messages by email.
SimpleFormattedCompletionNotifier() - Constructor for class org.apache.taverna.server.master.worker.SimpleFormattedCompletionNotifier
SinglePermissionMapping() - Constructor for class org.apache.taverna.server.master.soap.PermissionList.SinglePermissionMapping
SinglePermissionMapping(String, Permission) - Constructor for class org.apache.taverna.server.master.soap.PermissionList.SinglePermissionMapping
site - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.RecordIdentityBlockType
size() - Method in class org.apache.taverna.server.master.FileConcatenation
SMS_GATEWAY_URL - Static variable in interface org.apache.taverna.server.master.defaults.Default: The address of the SMS gateway service used.
SMSDispatcher - Class in org.apache.taverna.server.master.notification: Dispatch termination messages via SMS.
SMSDispatcher() - Constructor for class org.apache.taverna.server.master.notification.SMSDispatcher
sourceAddress - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkInboundUsedType
SPKIDataType - Class in org.apache.taverna.server.usagerecord.xml.dsig: Java class for SPKIDataType complex type.
SPKIDataType() - Constructor for class org.apache.taverna.server.usagerecord.xml.dsig.SPKIDataType
spkiSexpAndAny - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.SPKIDataType
start() - Method in class org.apache.taverna.server.client.Run
START_WAIT_TIME - Static variable in class org.apache.taverna.server.localworker.api.Constants: Time to wait for the subprocess to wait, in milliseconds.
started(TavernaRun, String, String) - Method in class org.apache.taverna.server.master.notification.atom.EventDAO
startTime - Variable in class org.apache.taverna.server.client.rest.RunDescription
startTime() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName
StartTime(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.StartTime: Create new instance using existing Client instance, and a base URI and any parameters
startTime - Variable in class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription: The location of the start time property.
StartTime - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type StartTime
StartTime() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.StartTime
startTime - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType
startTime - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.MemoryUsageBlockType
startTime - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType
startTimeOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Get an outline of the operations supported.
startupTime - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
startupTime() - Method in interface org.apache.taverna.server.master.admin.Admin: The property for the length of time it took to start the forker.
startupTime() - Method in class org.apache.taverna.server.master.admin.AdminBean
startWorker() - Method in interface org.apache.taverna.server.localworker.api.Worker: Move the worker out of the stopped state and back to operating.
startWorker() - Method in class org.apache.taverna.server.localworker.impl.WorkerCore: Move the worker out of the stopped state and back to operating.
state - Variable in class org.apache.taverna.server.master.worker.RunFactoryConfiguration
status - Variable in class org.apache.taverna.server.client.rest.RunDescription
Status - Enum in org.apache.taverna.server.client: States of a workflow run.
status() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName
Status(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Status: Create new instance using existing Client instance, and a base URI and any parameters
Status - Enum in org.apache.taverna.server.master.common: States of a workflow run.
STATUS - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerRunREST.PathNames
status - Variable in class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription: The location of the status description.
Status - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type Status
Status() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.Status
status - Variable in class org.apache.taverna.server.usagerecord.xml.urf.UsageRecordType
status - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType
status - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType
statusOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Get an outline of the operations supported.
stderr - Variable in class org.apache.taverna.server.client.rest.RunDescription
stderr() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName
Stderr(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Stderr: Create new instance using existing Client instance, and a base URI and any parameters
STDERR - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerRunREST.PathNames
stderr - Variable in class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription: The stderr of the run.
stderrOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Get an outline of the operations supported.
stdout - Variable in class org.apache.taverna.server.client.rest.RunDescription
stdout() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName
Stdout(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Stdout: Create new instance using existing Client instance, and a base URI and any parameters
STDOUT - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerRunREST.PathNames
stdout - Variable in class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription: The stdout of the run.
stdoutOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Get an outline of the operations supported.
StillWorkingOnItException - Exception in org.apache.taverna.server.localworker.remote: Exception that indicates that the implementation is still working on processing the operation.
StillWorkingOnItException(String) - Constructor for exception org.apache.taverna.server.localworker.remote.StillWorkingOnItException
stopWorker() - Method in interface org.apache.taverna.server.localworker.api.Worker: Move the worker into the stopped state from the operating state.
stopWorker() - Method in class org.apache.taverna.server.localworker.impl.WorkerCore: Move the worker into the stopped state from the operating state.
storageClass - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType
storageLogicalCapacityUsed - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType
storageMedia - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType
storageResourceCapacityAllocated - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType
storageResourceCapacityUsed - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType
storageShare - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType
storageUnit - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Disk
storageUnit - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Memory
storageUnit - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Network
storageUnit - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Swap
storageUnit - Variable in class org.apache.taverna.server.usagerecord.xml.urf.VolumeResource
storageUsageBlock - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecordType
StorageUsageBlockType - Class in org.apache.taverna.server.usagerecord.xml.urf2: Open Grid Forum GFD.204 Usage Record type StorageUsageBlockType
StorageUsageBlockType() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf2.StorageUsageBlockType
store() - Method in class org.apache.taverna.server.master.localworker.LocalWorkerState
storeEvents(List<Event>) - Method in class org.apache.taverna.server.master.notification.atom.EventDAO
storeUsageRecord(String) - Method in class org.apache.taverna.server.master.usage.UsageRecordRecorder: Accept a usage record for recording.
string - Variable in class org.apache.taverna.server.master.admin.Admin.StringList
StringList() - Constructor for class org.apache.taverna.server.master.admin.Admin.StringList
StrippedDownAuthProvider - Class in org.apache.taverna.server.master.identity: A stripped down version of a DaoAuthenticationProvider/ AbstractUserDetailsAuthenticationProvider that avoids much of the overhead associated with that class.
StrippedDownAuthProvider() - Constructor for class org.apache.taverna.server.master.identity.StrippedDownAuthProvider
SUBDIR_LIST - Static variable in class org.apache.taverna.server.localworker.api.Constants: Subdirectories of the working directory to create by default.
subjectIdentityBlock - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecordType
SubjectIdentityBlockType - Class in org.apache.taverna.server.usagerecord.xml.urf2: Open Grid Forum GFD.204 Usage Record type SubjectIdentityBlockType
SubjectIdentityBlockType() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf2.SubjectIdentityBlockType
SubmitHost - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type SubmitHost
SubmitHost() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.SubmitHost
submitHost - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType
submitHost - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType
submitType - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType
SubmitTypeType - Class in org.apache.taverna.server.usagerecord.xml.urf2: Open Grid Forum GFD.204 Usage Record type SubmitTypeType
SubmitTypeType() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf2.SubmitTypeType
submitWorkflow(Workflow, UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerREST: Accepts (or not) a request to create a new run executing the given workflow.
submitWorkflow(Workflow) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Make a run for a particular workflow.
submitWorkflow(Workflow, UriInfo) - Method in class org.apache.taverna.server.master.TavernaServer
submitWorkflow(Workflow) - Method in class org.apache.taverna.server.master.TavernaServer
submitWorkflowByURI(URI) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Make a run for a particular workflow, where that workflow will be downloaded from elsewhere.
submitWorkflowByURI(URI) - Method in class org.apache.taverna.server.master.TavernaServer
submitWorkflowByURL(List<URI>, UriInfo) - Method in interface org.apache.taverna.server.master.rest.TavernaServerREST: Accepts (or not) a request to create a new run executing the workflow at the given location.
submitWorkflowByURL(List<URI>, UriInfo) - Method in class org.apache.taverna.server.master.TavernaServer
submitWorkflowMTOM(WrappedWorkflow) - Method in interface org.apache.taverna.server.master.soap.TavernaServerSOAP: Make a run for a particular workflow.
submitWorkflowMTOM(WrappedWorkflow) - Method in class org.apache.taverna.server.master.TavernaServer
SUBPROCESS_START_POLL_SLEEP - Static variable in interface org.apache.taverna.server.master.defaults.Default: Polling interval to use during startup, in milliseconds.
SUBPROCESS_START_WAIT - Static variable in interface org.apache.taverna.server.master.defaults.Default: How long to wait for subprocess startup, in seconds.
SupportAware - Interface in org.apache.taverna.server.master.api: Indicates that this is a class that wants to be told by Spring about the main support bean.
supports(Class<?>) - Method in class org.apache.taverna.server.master.identity.StrippedDownAuthProvider
suspendDuration - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType
Swap - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type Swap
Swap() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.Swap
SYSTEM_ENCODING - Static variable in class org.apache.taverna.server.localworker.api.Constants: The name of the default encoding for characters on this machine.

T

T2FLOW - Static variable in interface org.apache.taverna.server.master.common.Namespaces: The T2flow document format's namespace name.
T2FLOW - Static variable in class org.apache.taverna.server.master.rest.handler.T2FlowDocumentHandler
T2FLOW_NS - Static variable in class org.apache.taverna.server.master.rest.handler.T2FlowDocumentHandler
T2FLOW_ROOTNAME - Static variable in class org.apache.taverna.server.master.rest.handler.T2FlowDocumentHandler
T2FlowDocumentHandler - Class in org.apache.taverna.server.master.rest.handler: Handler that allows a .t2flow document to be read from and written to a REST message directly.
T2FlowDocumentHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.T2FlowDocumentHandler
T_CREATE - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerRunREST.PathNames
T_EXPIRE - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerRunREST.PathNames
T_FINISH - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerRunREST.PathNames
T_START - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerRunREST.PathNames
target - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.SignaturePropertyType
TavernaRun - Class in org.apache.taverna.server.client.generic: Java class for TavernaRun complex type.
TavernaRun() - Constructor for class org.apache.taverna.server.client.generic.TavernaRun
TavernaRun - Interface in org.apache.taverna.server.master.interfaces: The interface to a taverna workflow run, or "run" for short.
TavernaRunInputs - Class in org.apache.taverna.server.client.rest: Java class for TavernaRunInputs complex type.
TavernaRunInputs() - Constructor for class org.apache.taverna.server.client.rest.TavernaRunInputs
TavernaRunManager - Class in org.apache.taverna.server.localworker.impl: The registered factory for runs, this class is responsible for constructing runs that are suitable for particular users.
TavernaRunManager(String) - Constructor for class org.apache.taverna.server.localworker.impl.TavernaRunManager: An RMI-enabled factory for runs.
TavernaSecurityContext - Interface in org.apache.taverna.server.master.interfaces: Security context for a workflow run.
TavernaServer - Class in org.apache.taverna.server.client: Client connection to a Taverna Server.
TavernaServer - Class in org.apache.taverna.server.client.wadl
TavernaServer() - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer
TavernaServer - Class in org.apache.taverna.server.master: The core implementation of the web application.
TavernaServer() - Constructor for class org.apache.taverna.server.master.TavernaServer
TavernaServer.AuthorizationException - Exception in org.apache.taverna.server.client
TavernaServer.ClientException - Exception in org.apache.taverna.server.client
TavernaServer.Root - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.Policy - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.Policy.Capabilities - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.Policy.EnabledNotificationFabrics - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.Policy.OperatingLimit - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.Policy.PermittedListenerTypes - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.Policy.PermittedWorkflows - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.Policy.RunLimit - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.Runs - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName - Class in org.apache.taverna.server.client.wadl: This represents how a Taverna Server workflow run looks to a RESTful API.
TavernaServer.Root.RunsRunName.CreateTime - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Expiry - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.FinishTime - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.GenerateProvenance - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Input - Class in org.apache.taverna.server.client.wadl: This represents how a Taverna Server workflow run's inputs looks to a RESTful API.
TavernaServer.Root.RunsRunName.Input.Baclava - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Input.Expected - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Input.InputName - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Interaction - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Interaction.Id - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Listeners - Class in org.apache.taverna.server.client.wadl: This represents all the event listeners attached to a workflow run.
TavernaServer.Root.RunsRunName.Listeners.Name - Class in org.apache.taverna.server.client.wadl: This represents a single event listener attached to a workflow run.
TavernaServer.Root.RunsRunName.Listeners.Name.Configuration - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Listeners.Name.Properties - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Listeners.Name.PropertiesPropertyName - Class in org.apache.taverna.server.client.wadl: This represents a single property attached of an event listener.
TavernaServer.Root.RunsRunName.Log - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Name - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Output - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.RunBundle - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Security - Class in org.apache.taverna.server.client.wadl: Manages the security of the workflow run.
TavernaServer.Root.RunsRunName.Security.Credentials - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Security.CredentialsId - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Security.Owner - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Security.Permissions - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Security.PermissionsId - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Security.Trusts - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Security.TrustsId - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.StartTime - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Status - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Stderr - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Stdout - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Usage - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Wd - Class in org.apache.taverna.server.client.wadl: Representation of how a workflow run's working directory tree looks.
TavernaServer.Root.RunsRunName.Wd.Path - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Wd.Path2 - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Wd.Path3 - Class in org.apache.taverna.server.client.wadl
TavernaServer.Root.RunsRunName.Workflow - Class in org.apache.taverna.server.client.wadl
TavernaServerBean - Interface in org.apache.taverna.server.master.api: The methods of the webapp that are accessed by beans other than itself or those which are told directly about it.
TavernaServerConnectionFactory - Class in org.apache.taverna.server.client: Connect to a Taverna Server.
TavernaServerConnectionFactory() - Constructor for class org.apache.taverna.server.client.TavernaServerConnectionFactory
TavernaServerDirectoryREST - Interface in org.apache.taverna.server.master.rest: Representation of how a workflow run's working directory tree looks.
TavernaServerDirectoryREST.NegotiationFailedException - Exception in org.apache.taverna.server.master.rest: Exception thrown to indicate a failure by the client to provide an acceptable content type.
TavernaServerInputREST - Interface in org.apache.taverna.server.master.rest: This represents how a Taverna Server workflow run's inputs looks to a RESTful API.
TavernaServerInputREST.InDesc - Class in org.apache.taverna.server.master.rest: The Details of a particular input port's value assignment, done with JAXB.
TavernaServerInputREST.InDesc.AbstractContents - Class in org.apache.taverna.server.master.rest: Either a filename or a literal string, used to provide input to a workflow port.
TavernaServerInputREST.InDesc.File - Class in org.apache.taverna.server.master.rest: The name of a file that provides input to the port.
TavernaServerInputREST.InDesc.Reference - Class in org.apache.taverna.server.master.rest: A reference to a file elsewhere on this server.
TavernaServerInputREST.InDesc.Value - Class in org.apache.taverna.server.master.rest: The literal input to the port.
TavernaServerInputREST.InputsDescriptor - Class in org.apache.taverna.server.master.rest: A description of the structure of inputs to a Taverna workflow run, done with JAXB.
TavernaServerInputREST.PathNames - Interface in org.apache.taverna.server.master.rest
TavernaServerListenersREST - Interface in org.apache.taverna.server.master.rest: This represents all the event listeners attached to a workflow run.
TavernaServerListenersREST.ListenerDescription - Class in org.apache.taverna.server.master.rest: A description of an event listener that is attached to a workflow run.
TavernaServerListenersREST.Listeners - Class in org.apache.taverna.server.master.rest: The list of descriptions of listeners attached to a run.
TavernaServerListenersREST.Properties - Class in org.apache.taverna.server.master.rest: The list of properties of a listener.
TavernaServerListenersREST.Property - Interface in org.apache.taverna.server.master.rest: This represents a single property attached of an event listener.
TavernaServerListenersREST.PropertyDescription - Class in org.apache.taverna.server.master.rest: The description of a single property, done with JAXB.
TavernaServerListenersREST.TavernaServerListenerREST - Interface in org.apache.taverna.server.master.rest: This represents a single event listener attached to a workflow run.
TavernaServerREST - Interface in org.apache.taverna.server.master.rest: The REST service interface to Taverna 3 Server.
TavernaServerREST.EnabledNotificationFabrics - Class in org.apache.taverna.server.master.rest: Helper class for describing the listener types that are allowed via JAXB.
TavernaServerREST.EventFeed - Interface in org.apache.taverna.server.master.rest: The interface exposed by the Atom feed of events.
TavernaServerREST.PathNames - Interface in org.apache.taverna.server.master.rest: Factored out path names used in the TavernaServerREST interface and related places.
TavernaServerREST.PermittedListeners - Class in org.apache.taverna.server.master.rest: Helper class for describing the listener types that are allowed via JAXB.
TavernaServerREST.PermittedWorkflows - Class in org.apache.taverna.server.master.rest: Helper class for describing the workflows that are allowed via JAXB.
TavernaServerREST.PolicyView - Interface in org.apache.taverna.server.master.rest: How to discover the publicly-visible policies supported by this server.
TavernaServerREST.PolicyView.CapabilityList - Class in org.apache.taverna.server.master.rest: A list of Taverna Server capabilities.
TavernaServerREST.PolicyView.PolicyDescription - Class in org.apache.taverna.server.master.rest: A description of the parts of a server policy.
TavernaServerREST.RunList - Class in org.apache.taverna.server.master.rest: Helper class for describing the workflow runs.
TavernaServerREST.ServerDescription - Class in org.apache.taverna.server.master.rest: Helper class for describing the server's user-facing management API via JAXB.
TavernaServerREST.WorkflowReference - Class in org.apache.taverna.server.master.rest: A reference to a workflow hosted on some public HTTP server.
TavernaServerRunREST - Interface in org.apache.taverna.server.master.rest: This represents how a Taverna Server workflow run looks to a RESTful API.
TavernaServerRunREST.PathNames - Interface in org.apache.taverna.server.master.rest: Factored out path names used in the TavernaServerRunREST interface and related places.
TavernaServerRunREST.RunDescription - Class in org.apache.taverna.server.master.rest: The description of where everything is in a RESTful view of a workflow run.
TavernaServerRunREST.RunDescription.Expiry - Class in org.apache.taverna.server.master.rest: How to describe a run's expiry.
TavernaServerRunREST.RunDescription.ListenerList - Class in org.apache.taverna.server.master.rest: The description of a list of listeners attached to a run.
TavernaServerSecurityREST - Interface in org.apache.taverna.server.master.rest: Manages the security of the workflow run.
TavernaServerSecurityREST.CredentialHolder - Class in org.apache.taverna.server.master.rest: A container for a credential, used to work around issues with type inference in CXF's REST service handling and JAXB.
TavernaServerSecurityREST.CredentialList - Class in org.apache.taverna.server.master.rest: A simple list of credential descriptions.
TavernaServerSecurityREST.Descriptor - Class in org.apache.taverna.server.master.rest: A description of the security resources associated with a workflow run.
TavernaServerSecurityREST.Descriptor.Credentials - Class in org.apache.taverna.server.master.rest: A description of credentials associated with a workflow run.
TavernaServerSecurityREST.Descriptor.Trusts - Class in org.apache.taverna.server.master.rest: A description of trusted certificates associated with a workflow run.
TavernaServerSecurityREST.PathNames - Interface in org.apache.taverna.server.master.rest
TavernaServerSecurityREST.PermissionDescription - Class in org.apache.taverna.server.master.rest: An instruction to update the permissions for a user.
TavernaServerSecurityREST.PermissionsDescription - Class in org.apache.taverna.server.master.rest: A description of the permissions granted to others by the owner of a workflow run.
TavernaServerSecurityREST.PermissionsDescription.LinkedPermissionDescription - Class in org.apache.taverna.server.master.rest: A description of the permissions granted to one user by the owner of a workflow run.
TavernaServerSecurityREST.TrustList - Class in org.apache.taverna.server.master.rest: A simple list of trusted certificate descriptions.
TavernaServerSOAP - Interface in org.apache.taverna.server.master.soap: The SOAP service interface to Taverna 3 Server.
TavernaServerSupport - Class in org.apache.taverna.server.master: Web application support utilities.
TavernaServerSupport() - Constructor for class org.apache.taverna.server.master.TavernaServerSupport
TIME - Static variable in class org.apache.taverna.server.localworker.api.Constants
time(ProceedingJoinPoint) - Method in class org.apache.taverna.server.master.utils.CallTimeLogger: The timer for this aspect.
TimeDuration - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type TimeDuration
TimeDuration() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.TimeDuration
TimeInstant - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type TimeInstant
TimeInstant() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.TimeInstant
timeInstant - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.CloudUsageBlockType
timeInstant - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.JobUsageBlockType
TimeInstantType - Class in org.apache.taverna.server.usagerecord.xml.urf2: Open Grid Forum GFD.204 Usage Record type TimeInstantType
TimeInstantType() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf2.TimeInstantType
timeOfDeath - Variable in class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription.Expiry: What the expiry currently is.
TIMESTAMP - Static variable in class org.apache.taverna.server.master.common.VersionedElement
TimingOutTask - Class in org.apache.taverna.server.localworker.impl.utils: A class that handles running a task that can take some time.
TimingOutTask() - Constructor for class org.apache.taverna.server.localworker.impl.utils.TimingOutTask
to - Variable in class org.apache.taverna.server.master.rest.FileSegment: The offset of the first byte after the segment to read.
TO_LOG - Static variable in class org.apache.taverna.server.master.utils.DerbyUtils: A writer that channels things on to the log.
toDBform(RemoteRunDelegate) - Static method in class org.apache.taverna.server.master.worker.RunConnection: Manufacture a persistent representation of the given workflow run.
toResponse(MediaType) - Method in class org.apache.taverna.server.master.rest.FileSegment: Convert to a response, as per RFC 2616.
toResponse(AccessDeniedException) - Method in class org.apache.taverna.server.master.rest.handler.AccessDeniedHandler
toResponse(BadInputPortNameException) - Method in class org.apache.taverna.server.master.rest.handler.BadInputPortNameHandler
toResponse(BadPropertyValueException) - Method in class org.apache.taverna.server.master.rest.handler.BadPropertyValueHandler
toResponse(BadStateChangeException) - Method in class org.apache.taverna.server.master.rest.handler.BadStateChangeHandler
toResponse(FilesystemAccessException) - Method in class org.apache.taverna.server.master.rest.handler.FilesystemAccessHandler
toResponse(GeneralFailureException) - Method in class org.apache.taverna.server.master.rest.handler.GeneralFailureHandler
toResponse(IllegalArgumentException) - Method in class org.apache.taverna.server.master.rest.handler.IllegalArgumentHandler
toResponse(ImplementationException) - Method in class org.apache.taverna.server.master.rest.handler.ImplementationProblemHandler
toResponse(InvalidCredentialException) - Method in class org.apache.taverna.server.master.rest.handler.InvalidCredentialHandler
toResponse(JAXBException) - Method in class org.apache.taverna.server.master.rest.handler.JAXBExceptionHandler
toResponse(TavernaServerDirectoryREST.NegotiationFailedException) - Method in class org.apache.taverna.server.master.rest.handler.NegotiationFailedHandler
toResponse(NoCreateException) - Method in class org.apache.taverna.server.master.rest.handler.NoCreateHandler
toResponse(NoCredentialException) - Method in class org.apache.taverna.server.master.rest.handler.NoCredentialHandler
toResponse(NoDestroyException) - Method in class org.apache.taverna.server.master.rest.handler.NoDestroyHandler
toResponse(NoDirectoryEntryException) - Method in class org.apache.taverna.server.master.rest.handler.NoDirectoryEntryHandler
toResponse(NoListenerException) - Method in class org.apache.taverna.server.master.rest.handler.NoListenerHandler
toResponse(NotOwnerException) - Method in class org.apache.taverna.server.master.rest.handler.NotOwnerHandler
toResponse(NoUpdateException) - Method in class org.apache.taverna.server.master.rest.handler.NoUpdateHandler
toResponse(OverloadedException) - Method in class org.apache.taverna.server.master.rest.handler.OverloadedHandler
toResponse(UnknownRunException) - Method in class org.apache.taverna.server.master.rest.handler.UnknownRunHandler
toString() - Method in enum org.apache.taverna.server.client.Property
toString() - Method in class org.apache.taverna.server.master.common.Credential.Dummy
toString() - Method in class org.apache.taverna.server.master.common.Credential.KeyPair
toString() - Method in class org.apache.taverna.server.master.common.Credential.Password
toString() - Method in class org.apache.taverna.server.master.identity.WorkflowInternalAuthProvider.WorkflowSelfAuthority
toString() - Method in class org.apache.taverna.server.master.utils.UsernamePrincipal
TransactionAspect() - Constructor for class org.apache.taverna.server.master.utils.JDOSupport.TransactionAspect
transform - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.TransformsType
transforms - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.ReferenceType
transforms - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.RetrievalMethodType
TransformsType - Class in org.apache.taverna.server.usagerecord.xml.dsig: Java class for TransformsType complex type.
TransformsType() - Constructor for class org.apache.taverna.server.usagerecord.xml.dsig.TransformsType
TransformType - Class in org.apache.taverna.server.usagerecord.xml.dsig: Java class for TransformType complex type.
TransformType() - Constructor for class org.apache.taverna.server.usagerecord.xml.dsig.TransformType
trust - Variable in class org.apache.taverna.server.client.rest.TrustCollection
trust - Variable in class org.apache.taverna.server.client.rest.TrustList
Trust - Class in org.apache.taverna.server.master.common: A description of a trusted identity or identities.
Trust() - Constructor for class org.apache.taverna.server.master.common.Trust
trust - Variable in class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.Descriptor.Trusts: Descriptions of the trusted certs themselves.
trust - Variable in class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.TrustList: The descriptions of the trusted certificates
TrustCollection - Class in org.apache.taverna.server.client.rest: Java class for TrustCollection complex type.
TrustCollection() - Constructor for class org.apache.taverna.server.client.rest.TrustCollection
TrustDescriptor - Class in org.apache.taverna.server.client.generic: Java class for TrustDescriptor complex type.
TrustDescriptor() - Constructor for class org.apache.taverna.server.client.generic.TrustDescriptor
TrustList - Class in org.apache.taverna.server.client.rest: Java class for trustList complex type.
TrustList() - Constructor for class org.apache.taverna.server.client.rest.TrustList
TrustList() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.TrustList
TrustList(Trust[]) - Constructor for class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.TrustList: Initialise the list of trusted certificates.
trustOptions(String) - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Get an outline of the operations supported.
trusts - Variable in class org.apache.taverna.server.client.rest.SecurityDescriptor
trusts() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security
Trusts(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.Trusts: Create new instance using existing Client instance, and a base URI and any parameters
trusts - Variable in class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.Descriptor: Characterisation of the trusted certificates attached to the run.
Trusts() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.Descriptor.Trusts
Trusts(URI, Trust[]) - Constructor for class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.Descriptor.Trusts: Initialise a description of the trusted certificates.
TRUSTS - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST.PathNames
trustsId(String) - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security
TrustsId(Client, URI, String) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.TrustsId: Create new instance using existing Client instance, and a base URI and any parameters
TrustsId(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Security.TrustsId: Create new instance using existing Client instance, and the URI from which the parameters will be extracted
trustsOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerSecurityREST: Get an outline of the operations supported.
TRUSTSTORE_FILE - Static variable in class org.apache.taverna.server.localworker.api.Constants: The name of the file that will be the created truststore.
tryLookup() - Method in class org.apache.taverna.server.master.notification.EmailDispatcher: Try to perform the lookup of the email service.
TwitterDispatcher - Class in org.apache.taverna.server.master.notification: Super simple-minded twitter dispatcher.
TwitterDispatcher() - Constructor for class org.apache.taverna.server.master.notification.TwitterDispatcher
TwitterDispatcher.NoCredentialsException - Exception in org.apache.taverna.server.master.notification: Indicates that the user did not supply their credentials.
TwitterDispatcher.NotConfiguredException - Exception in org.apache.taverna.server.master.notification: Indicates that the dispatcher has not been configured with service credentials.
type - Variable in class org.apache.taverna.server.client.rest.ListenerDefinition
type - Variable in class org.apache.taverna.server.client.rest.ListenerDescription
type - Variable in class org.apache.taverna.server.client.rest.PermittedListeners
type - Variable in class org.apache.taverna.server.master.rest.ListenerDefinition: The type of event listener to create.
type - Variable in class org.apache.taverna.server.master.rest.TavernaServerListenersREST.ListenerDescription: The type of the event listener.
type - Variable in class org.apache.taverna.server.master.rest.TavernaServerREST.PermittedListeners: The listener types that are permitted.
type - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.ReferenceType
type - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.RetrievalMethodType
type - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Disk
type - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Memory
type - Variable in class org.apache.taverna.server.usagerecord.xml.urf.ServiceLevel
type - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Swap
type - Variable in class org.apache.taverna.server.usagerecord.xml.urf.TimeDuration
type - Variable in class org.apache.taverna.server.usagerecord.xml.urf.TimeInstant
type - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.BenchmarkType
type - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.GlobalGroupAttributeType
type - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.TimeInstantType

U

unit - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Charge
units - Variable in class org.apache.taverna.server.usagerecord.xml.urf.ConsumableResourceType
UnknownRunException - Exception in org.apache.taverna.server.master.exceptions: Exception thrown to indicate that the handle of the run is unknown (or unacceptable to the current user).
UnknownRunException() - Constructor for exception org.apache.taverna.server.master.exceptions.UnknownRunException
UnknownRunException(Throwable) - Constructor for exception org.apache.taverna.server.master.exceptions.UnknownRunException
UnknownRunHandler - Class in org.apache.taverna.server.master.rest.handler
UnknownRunHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.UnknownRunHandler
unlockPassword - Variable in class org.apache.taverna.server.client.generic.KeyPairCredential
unlockPassword - Variable in class org.apache.taverna.server.master.common.Credential.KeyPair: The password used to unlock the keystore file.
unmarshal(String) - Static method in class org.apache.taverna.server.master.common.Workflow: Convert from marshalled form.
unmarshal(String) - Method in class org.apache.taverna.server.port_description.utils.IntAdapter
unmarshal(String) - Static method in class org.apache.taverna.server.usagerecord.JobUsageRecord
unmarshal(Element) - Static method in class org.apache.taverna.server.usagerecord.JobUsageRecord
unpersistRun(String) - Method in class org.apache.taverna.server.master.worker.RunDatabaseDAO: Stop a workflow run from being persistent.
unregisterRun(String) - Method in interface org.apache.taverna.server.master.interfaces.RunStore: Removes a run from the store.
unregisterRun(String, TavernaRun) - Method in class org.apache.taverna.server.master.TavernaServerSupport: Stops a run from being possible to be looked up and destroys it.
unregisterRun(String) - Method in class org.apache.taverna.server.master.worker.RunDatabase
UNSECURE_PROP - Static variable in class org.apache.taverna.server.localworker.api.Constants: The Java property to set to make this code not try to enforce security policy.
unwrapWorkflow(Document) - Method in class org.apache.taverna.server.localworker.impl.TavernaRunManager: How to get the actual workflow document from the XML document that it is contained in.
updateExpiry(TavernaRun, Date) - Method in class org.apache.taverna.server.master.TavernaServerSupport: Changes the expiry date of a workflow run.
upgradeToAuth(String, String) - Method in class org.apache.taverna.server.client.TavernaServer
UploadFile - Class in org.apache.taverna.server.client.rest: Java class for UploadFile complex type.
UploadFile() - Constructor for class org.apache.taverna.server.client.rest.UploadFile
UR - Static variable in interface org.apache.taverna.server.master.common.Namespaces: The Usage Record specification's namespace name.
Uri - Class in org.apache.taverna.server.master.common: A class that makes it simpler to work with an element with a URI in an href attribute.
Uri() - Constructor for class org.apache.taverna.server.master.common.Uri: Make a reference that points nowhere.
Uri(URI) - Constructor for class org.apache.taverna.server.master.common.Uri: Make a reference to the given location.
Uri(UriBuilder, String...) - Constructor for class org.apache.taverna.server.master.common.Uri: Make a reference from the factory with the given parameters.
Uri(UriInfo, String, String...) - Constructor for class org.apache.taverna.server.master.common.Uri: Make a reference from the factory with the given parameters.
Uri(UriInfo, boolean, String, String...) - Constructor for class org.apache.taverna.server.master.common.Uri: Make a reference from the factory with the given parameters.
uri - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.ReferenceType
uri - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.RetrievalMethodType
Uri.Rewriter - Class in org.apache.taverna.server.master.common: A bean that allows configuration of how to rewrite generated URIs to be secure.
URI_LIST - Static variable in class org.apache.taverna.server.master.rest.handler.URIListHandler: The content type we handle.
UriBuilderFactory - Interface in org.apache.taverna.server.master.interfaces: How to manufacture URIs to workflow runs.
URIListHandler - Class in org.apache.taverna.server.master.rest.handler: Deserialization and serialization engine for the "text/uri-list" content type.
URIListHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.URIListHandler
url - Variable in class org.apache.taverna.server.master.rest.TavernaServerREST.WorkflowReference
URList() - Constructor for class org.apache.taverna.server.master.admin.Admin.URList
usage - Variable in class org.apache.taverna.server.client.rest.RunDescription
usage() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName
Usage(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Usage: Create new instance using existing Client instance, and a base URI and any parameters
USAGE - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerRunREST.PathNames
usage - Variable in class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription: The usage record for the run.
usage - Variable in class org.apache.taverna.server.usagerecord.xml.urf.UsageRecords
usage - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecords
usageOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Get an outline of the operations supported.
usageRecord - Variable in class org.apache.taverna.server.master.admin.Admin.URList
UsageRecord - Class in org.apache.taverna.server.master.usage: A usage record as recorded in the database.
UsageRecord() - Constructor for class org.apache.taverna.server.master.usage.UsageRecord: Create an empty usage record database entry.
UsageRecord(String) - Constructor for class org.apache.taverna.server.master.usage.UsageRecord: Create a usage record database entry that is populated from the given UR.
UsageRecord(JobUsageRecord) - Constructor for class org.apache.taverna.server.master.usage.UsageRecord: Create a usage record database entry that is populated from the given UR.
usageRecordDumpFile - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
UsageRecordReceiver - Interface in org.apache.taverna.server.localworker.server: Interface exported by (part of) the webapp to allow processes it creates to push in usage records.
UsageRecordRecorder - Class in org.apache.taverna.server.master.usage: A simple state-aware writer of usage records.
UsageRecordRecorder() - Constructor for class org.apache.taverna.server.master.usage.UsageRecordRecorder
usageRecords - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
usageRecords() - Method in interface org.apache.taverna.server.master.admin.Admin: The property for the list of usage records collected.
usageRecords() - Method in class org.apache.taverna.server.master.admin.AdminBean
UsageRecords - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type UsageRecords
UsageRecords() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.UsageRecords
UsageRecords - Class in org.apache.taverna.server.usagerecord.xml.urf2: Open Grid Forum GFD.204 Usage Record type UsageRecords
UsageRecords() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecords
UsageRecordType - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type UsageRecordType
UsageRecordType() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.UsageRecordType
UsageRecordType - Class in org.apache.taverna.server.usagerecord.xml.urf2: Open Grid Forum GFD.204 Usage Record type UsageRecordType
UsageRecordType() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf2.UsageRecordType
usageType - Variable in class org.apache.taverna.server.usagerecord.xml.urf.CpuDuration
user(String) - Method in interface org.apache.taverna.server.master.admin.Admin
user - Variable in class org.apache.taverna.server.master.admin.Admin.UserList
user(String) - Method in class org.apache.taverna.server.master.admin.AdminBean
USER - Static variable in interface org.apache.taverna.server.master.common.Roles: The role of a normal user.
User - Class in org.apache.taverna.server.master.identity: The representation of a user in the database.
User() - Constructor for class org.apache.taverna.server.master.identity.User
useradd(Admin.UserDesc, UriInfo) - Method in interface org.apache.taverna.server.master.admin.Admin
useradd(Admin.UserDesc, UriInfo) - Method in class org.apache.taverna.server.master.admin.AdminBean
userdel(String) - Method in interface org.apache.taverna.server.master.admin.Admin
userdel(String) - Method in class org.apache.taverna.server.master.admin.AdminBean
UserDesc() - Constructor for class org.apache.taverna.server.master.admin.Admin.UserDesc
userIdentity - Variable in class org.apache.taverna.server.usagerecord.xml.urf.UsageRecordType
UserIdentity - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type UserIdentity
UserIdentity() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.UserIdentity
UserList() - Constructor for class org.apache.taverna.server.master.admin.Admin.UserList
username - Variable in class org.apache.taverna.server.client.generic.PasswordCredential
userName - Variable in class org.apache.taverna.server.client.rest.LinkedPermissionDescription
userName - Variable in class org.apache.taverna.server.client.rest.PermissionDescription
username - Variable in class org.apache.taverna.server.master.admin.Admin.UserDesc
username - Variable in class org.apache.taverna.server.master.common.Credential.Password
userName - Variable in class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.PermissionDescription: Who to set the permission for?
userName - Variable in class org.apache.taverna.server.master.rest.TavernaServerSecurityREST.PermissionsDescription.LinkedPermissionDescription: Who is this granted to?
userName - Variable in class org.apache.taverna.server.master.soap.PermissionList.SinglePermissionMapping: The name of the user that this talks about.
UsernamePrincipal - Class in org.apache.taverna.server.master.utils: A simple serializable principal that just records the name.
UsernamePrincipal(String) - Constructor for class org.apache.taverna.server.master.utils.UsernamePrincipal
UsernamePrincipal(Principal) - Constructor for class org.apache.taverna.server.master.utils.UsernamePrincipal
UsernamePrincipal(Authentication) - Constructor for class org.apache.taverna.server.master.utils.UsernamePrincipal
UsernamePrincipal(Object) - Constructor for class org.apache.taverna.server.master.utils.UsernamePrincipal
userpass - Variable in class org.apache.taverna.server.client.rest.Credential
users - Variable in class org.apache.taverna.server.master.admin.Admin.AdminDescription
users(UriInfo) - Method in interface org.apache.taverna.server.master.admin.Admin
users(UriInfo) - Method in class org.apache.taverna.server.master.admin.AdminBean
userset(String, Admin.UserDesc) - Method in interface org.apache.taverna.server.master.admin.Admin
userset(String, Admin.UserDesc) - Method in class org.apache.taverna.server.master.admin.AdminBean
UserStore - Class in org.apache.taverna.server.master.identity: The bean class that is responsible for managing the users in the database.
UserStore() - Constructor for class org.apache.taverna.server.master.identity.UserStore
UserStore.CachedUserStore - Class in org.apache.taverna.server.master.identity
UserStoreAPI - Interface in org.apache.taverna.server.master.identity: The API that is exposed by the DAO that exposes user management.

V

validateCredential(Credential) - Method in interface org.apache.taverna.server.master.interfaces.TavernaSecurityContext: Tests if the credential is valid.
validateCredential(Credential) - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate
validateTrusted(Trust) - Method in interface org.apache.taverna.server.master.interfaces.TavernaSecurityContext: Tests if the trusted identity descriptor is valid.
validateTrusted(Trust) - Method in class org.apache.taverna.server.master.worker.SecurityContextDelegate
value - Variable in class org.apache.taverna.server.client.generic.DirectoryEntry
value() - Method in enum org.apache.taverna.server.client.generic.Permission
value - Variable in class org.apache.taverna.server.client.generic.TavernaRun
value - Variable in class org.apache.taverna.server.client.port.OutputPort
Value - Class in org.apache.taverna.server.client.port: Java class for Value complex type.
Value() - Constructor for class org.apache.taverna.server.client.port.Value
value - Variable in class org.apache.taverna.server.client.rest.FilesystemCreationOperation
value - Variable in class org.apache.taverna.server.client.rest.InputDescription.File
value - Variable in class org.apache.taverna.server.client.rest.InputDescription.Reference
value - Variable in class org.apache.taverna.server.client.rest.InputDescription
Value() - Constructor for class org.apache.taverna.server.client.rest.InputDescription.Value
value - Variable in class org.apache.taverna.server.client.rest.InputDescription.Value
value - Variable in class org.apache.taverna.server.client.rest.ListenerDefinition
value - Variable in class org.apache.taverna.server.client.rest.RunDescription.Expiry
value - Variable in class org.apache.taverna.server.master.common.InputDescription.Port: The value assigned to this port.
Value() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerInputREST.InDesc.Value
value - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.SignatureValueType
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Charge
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf.ConsumableResourceType
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf.CpuDuration
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Disk
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf.EndTime
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Host
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf.JobName
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf.MachineName
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Memory
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Network
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf.NodeCount
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Processors
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf.ProjectName
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Queue
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf.ResourceType
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf.ServiceLevel
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf.StartTime
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Status
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf.SubmitHost
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf.Swap
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf.TimeDuration
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf.TimeInstant
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf.WallDuration
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.BenchmarkType
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.GlobalGroupAttributeType
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.HostnameType
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.InfrastructureType
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkClassType
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkInboundUsedType
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.NetworkOutboundUsedType
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.QueueType
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.SubmitTypeType
value - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.TimeInstantType
valueOf(String) - Static method in enum org.apache.taverna.server.client.generic.Permission: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.apache.taverna.server.client.Property: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.apache.taverna.server.client.Status: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.apache.taverna.server.localworker.remote.RemoteStatus: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.apache.taverna.server.master.common.Permission: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.apache.taverna.server.master.common.Status: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.apache.taverna.server.master.common.Workflow.ContentType: Returns the enum constant of this type with the specified name.
valueOrListOrError - Variable in class org.apache.taverna.server.client.port.ListValue
values() - Static method in enum org.apache.taverna.server.client.generic.Permission: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.apache.taverna.server.client.Property: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.apache.taverna.server.client.Status: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.apache.taverna.server.localworker.remote.RemoteStatus: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.apache.taverna.server.master.common.Permission: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.apache.taverna.server.master.common.Status: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.apache.taverna.server.master.common.Workflow.ContentType: Returns an array containing the constants of this enum type, in the order they are declared.
VelocityCompletionNotifier - Class in org.apache.taverna.server.master.worker
VelocityCompletionNotifier() - Constructor for class org.apache.taverna.server.master.worker.VelocityCompletionNotifier
version - Variable in class org.apache.taverna.server.client.generic.Capability
version - Variable in class org.apache.taverna.server.master.common.Capability
Version - Interface in org.apache.taverna.server.master.common.version: Common location for describing the version of the server.
VERSION - Static variable in class org.apache.taverna.server.master.common.VersionedElement
VersionedElement - Class in org.apache.taverna.server.client.generic: Java class for VersionedElement complex type.
VersionedElement() - Constructor for class org.apache.taverna.server.client.generic.VersionedElement
VersionedElement - Class in org.apache.taverna.server.master.common: The type of an element that declares the version of the server that produced it.
VersionedElement() - Constructor for class org.apache.taverna.server.master.common.VersionedElement
VersionedElement(boolean) - Constructor for class org.apache.taverna.server.master.common.VersionedElement
VolumeResource - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type VolumeResource
VolumeResource() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.VolumeResource

W

WallDuration - Class in org.apache.taverna.server.usagerecord.xml.urf: Open Grid Forum GFD.98 Usage Record type WallDuration
WallDuration() - Constructor for class org.apache.taverna.server.usagerecord.xml.urf.WallDuration
wallDuration - Variable in class org.apache.taverna.server.usagerecord.xml.urf2.ComputeUsageBlockType
wallDurationOrCpuDurationOrNodeCount - Variable in class org.apache.taverna.server.usagerecord.xml.urf.UsageRecordType
wd() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName: Representation of how a workflow run's working directory tree looks.
Wd(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Wd: Create new instance using existing Client instance, and a base URI and any parameters
WebappAwareDataSource - Class in org.apache.taverna.server.master.utils: Add some awareness of the context so that we can locate databases internally to the webapp.
WebappAwareDataSource() - Constructor for class org.apache.taverna.server.master.utils.WebappAwareDataSource
WF - Static variable in interface org.apache.taverna.server.master.rest.TavernaServerRunREST.PathNames
Worker - Interface in org.apache.taverna.server.localworker.api: The interface between the connectivity layer and the thunk to the subprocesses.
WorkerCore - Class in org.apache.taverna.server.localworker.impl: The core class that connects to a Taverna command-line workflow execution engine.
WorkerCore(RunAccounting) - Constructor for class org.apache.taverna.server.localworker.impl.WorkerCore
WorkerFactory - Interface in org.apache.taverna.server.localworker.api: Class that manufactures instances of Worker.
WorkerModel - Interface in org.apache.taverna.server.master.worker: Profile of the getters and setters in a worker system.
Workflow - Class in org.apache.taverna.server.client.generic: Java class for Workflow complex type.
Workflow() - Constructor for class org.apache.taverna.server.client.generic.Workflow
workflow - Variable in class org.apache.taverna.server.client.rest.PermittedWorkflows
workflow() - Method in class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName
Workflow(Client, URI) - Constructor for class org.apache.taverna.server.client.wadl.TavernaServer.Root.RunsRunName.Workflow: Create new instance using existing Client instance, and a base URI and any parameters
Workflow - Class in org.apache.taverna.server.master.common: Encapsulation of a T2flow or Scufl2 document.
Workflow() - Constructor for class org.apache.taverna.server.master.common.Workflow
Workflow(Element) - Constructor for class org.apache.taverna.server.master.common.Workflow
Workflow(WorkflowBundle) - Constructor for class org.apache.taverna.server.master.common.Workflow
Workflow(URL) - Constructor for class org.apache.taverna.server.master.common.Workflow
workflow - Variable in class org.apache.taverna.server.master.rest.TavernaServerREST.PermittedWorkflows: The workflows that are permitted.
Workflow.ContentType - Enum in org.apache.taverna.server.master.common
workflowData - Variable in class org.apache.taverna.server.master.soap.WrappedWorkflow
workflowId - Variable in class org.apache.taverna.server.client.port.PortDescription
workflowId - Variable in class org.apache.taverna.server.port_description.AbstractPortDescription
WorkflowInternalAuthProvider - Class in org.apache.taverna.server.master.identity: A special authentication provider that allows a workflow to authenticate to itself.
WorkflowInternalAuthProvider() - Constructor for class org.apache.taverna.server.master.identity.WorkflowInternalAuthProvider
WorkflowInternalAuthProvider.WorkflowSelfAuthority - Class in org.apache.taverna.server.master.identity
WorkflowInternalAuthProvider.WorkflowSelfIDMapper - Class in org.apache.taverna.server.master.identity
workflowOptions() - Method in interface org.apache.taverna.server.master.rest.TavernaServerRunREST: Get an outline of the operations supported.
WorkflowReference() - Constructor for class org.apache.taverna.server.master.rest.TavernaServerREST.WorkflowReference
workflowRun - Variable in class org.apache.taverna.server.client.port.PortDescription
workflowRun - Variable in class org.apache.taverna.server.port_description.AbstractPortDescription
workflowRunId - Variable in class org.apache.taverna.server.client.port.PortDescription
workflowRunId - Variable in class org.apache.taverna.server.port_description.AbstractPortDescription
WorkflowSelfAuthority(String) - Constructor for class org.apache.taverna.server.master.identity.WorkflowInternalAuthProvider.WorkflowSelfAuthority
WorkflowSelfIDMapper() - Constructor for class org.apache.taverna.server.master.identity.WorkflowInternalAuthProvider.WorkflowSelfIDMapper
workingDirectory - Variable in class org.apache.taverna.server.client.rest.RunDescription
workingDirectory - Variable in class org.apache.taverna.server.master.rest.TavernaServerRunREST.RunDescription: The location of the working directory.
WrappedWorkflow - Class in org.apache.taverna.server.master.soap: An MTOM-capable description of how to transfer the contents of a file.
WrappedWorkflow() - Constructor for class org.apache.taverna.server.master.soap.WrappedWorkflow
wrapRuntimeException(RuntimeException) - Method in class org.apache.taverna.server.master.utils.RuntimeExceptionWrapper: Map an unexpected exception to one that can be correctly reported as a problem.
writeExternal(ObjectOutput) - Method in class org.apache.taverna.server.master.common.Workflow
writeTo(Entry, Class<?>, Type, Annotation[], MediaType, MultivaluedMap<String, Object>, OutputStream) - Method in class org.apache.taverna.server.master.rest.handler.EntryHandler
writeTo(Feed, Class<?>, Type, Annotation[], MediaType, MultivaluedMap<String, Object>, OutputStream) - Method in class org.apache.taverna.server.master.rest.handler.FeedHandler
writeTo(FileConcatenation, Class<?>, Type, Annotation[], MediaType, MultivaluedMap<String, Object>, OutputStream) - Method in class org.apache.taverna.server.master.rest.handler.FileConcatenationHandler
writeTo(File, Class<?>, Type, Annotation[], MediaType, MultivaluedMap<String, Object>, OutputStream) - Method in class org.apache.taverna.server.master.rest.handler.FileMessageHandler
writeTo(FileSegment, Class<?>, Type, Annotation[], MediaType, MultivaluedMap<String, Object>, OutputStream) - Method in class org.apache.taverna.server.master.rest.handler.FileSegmentHandler
writeTo(Permission, Class<?>, Type, Annotation[], MediaType, MultivaluedMap<String, Object>, OutputStream) - Method in class org.apache.taverna.server.master.rest.handler.PermissionHandler
writeTo(Workflow, Class<?>, Type, Annotation[], MediaType, MultivaluedMap<String, Object>, OutputStream) - Method in class org.apache.taverna.server.master.rest.handler.Scufl2DocumentHandler
writeTo(Workflow, Class<?>, Type, Annotation[], MediaType, MultivaluedMap<String, Object>, OutputStream) - Method in class org.apache.taverna.server.master.rest.handler.T2FlowDocumentHandler
writeTo(List<URI>, Class<?>, Type, Annotation[], MediaType, MultivaluedMap<String, Object>, OutputStream) - Method in class org.apache.taverna.server.master.rest.handler.URIListHandler
writeTo(Directory.ZipStream, Class<?>, Type, Annotation[], MediaType, MultivaluedMap<String, Object>, OutputStream) - Method in class org.apache.taverna.server.master.rest.handler.ZipStreamHandler
writeToFile(File) - Method in class org.apache.taverna.server.master.soap.FileContents: Write the content described by this class to the specified file.
WSDLHeadOptionsInterceptor - Class in org.apache.taverna.server.master.utils: Thunk for TAVSERV-293.
WSDLHeadOptionsInterceptor() - Constructor for class org.apache.taverna.server.master.utils.WSDLHeadOptionsInterceptor

X

X500Utils - Class in org.apache.taverna.server.master.utils: Support class that factors out some of the messier parts of working with X.500 identities and X.509 certificates.
X500Utils() - Constructor for class org.apache.taverna.server.master.utils.X500Utils
X509DataType - Class in org.apache.taverna.server.usagerecord.xml.dsig: Java class for X509DataType complex type.
X509DataType() - Constructor for class org.apache.taverna.server.usagerecord.xml.dsig.X509DataType
x509IssuerName - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.X509IssuerSerialType
x509IssuerSerialOrX509SKIOrX509SubjectName - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.X509DataType
X509IssuerSerialType - Class in org.apache.taverna.server.usagerecord.xml.dsig: Java class for X509IssuerSerialType complex type.
X509IssuerSerialType() - Constructor for class org.apache.taverna.server.usagerecord.xml.dsig.X509IssuerSerialType
x509SerialNumber - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.X509IssuerSerialType
XLINK - Static variable in interface org.apache.taverna.server.master.common.Namespaces: The XLink specification's namespace name.
XLINK - Static variable in interface org.apache.taverna.server.port_description.Namespaces
XML - Static variable in interface org.apache.taverna.server.master.common.version.Version
XSIG - Static variable in interface org.apache.taverna.server.master.common.Namespaces: The XML Digital Signature specification's namespace name.

Y

y - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.DSAKeyValueType

Z

ZippedDirectory - Class in org.apache.taverna.server.master.soap: An MTOM-capable description of how to transfer the zipped contents of a directory.
ZippedDirectory() - Constructor for class org.apache.taverna.server.master.soap.ZippedDirectory
ZippedDirectory(Directory) - Constructor for class org.apache.taverna.server.master.soap.ZippedDirectory: Initialise the contents of this descriptor from the given directory.
ZipStream() - Constructor for class org.apache.taverna.server.master.interfaces.Directory.ZipStream
ZipStreamHandler - Class in org.apache.taverna.server.master.rest.handler: How to write a ZIP file as the result entity of a request.
ZipStreamHandler() - Constructor for class org.apache.taverna.server.master.rest.handler.ZipStreamHandler

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