- g - Variable in class org.apache.taverna.robundle.xml.dsig.DSAKeyValueType
-
- geekcode - Static variable in class org.apache.taverna.scufl2.wfdesc.ontologies.Foaf
-
A textual geekcode for this person, see http://www.geekcode.com/geek.html
- gender - Static variable in class org.apache.taverna.scufl2.wfdesc.ontologies.Foaf
-
The gender of this Agent (typically but not necessarily 'male' or 'female').
- generateAnnotationId() - Method in class org.apache.taverna.robundle.manifest.PathAnnotation
-
- generated - Static variable in class org.apache.taverna.scufl2.wfdesc.ontologies.Prov_o
-
- generatedAtTime - Static variable in class org.apache.taverna.scufl2.wfdesc.ontologies.Prov_o
-
The time at which an entity was completely created and is available for use.
- GeneratedAtTime - Class in org.apache.taverna.scufl2.xml.prov
-
Java class for anonymous complex type.
- GeneratedAtTime() - Constructor for class org.apache.taverna.scufl2.xml.prov.GeneratedAtTime
-
- generatedAtTime - Variable in class org.apache.taverna.scufl2.xml.roevo.VersionableResource
-
- generateIdentifier() - Static method in class org.apache.taverna.scufl2.api.container.WorkflowBundle
-
- generateNewIdentifier() - Method in class org.apache.taverna.scufl2.api.common.AbstractRevisioned
-
- Generation - Static variable in class org.apache.taverna.scufl2.wfdesc.ontologies.Prov_o
-
An instance of prov:Generation provides additional descriptions about the
binary prov:wasGeneratedBy relation from a generated prov:Entity to the prov:Activity
that generated it.
- get(Object) - Method in class org.apache.taverna.scufl2.api.impl.LazyMap
-
- getAbout() - Method in class org.apache.taverna.robundle.manifest.PathAnnotation
-
- getAbout() - Method in class org.apache.taverna.scufl2.xml.Activity
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.Blocking
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.Configuration
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.CrossProduct
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.DataLink
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.DispatchStack
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.DispatchStackLayer
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.DotProduct
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.InputActivityPort
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.InputPortBinding
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.InputProcessorPort
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.InputWorkflowPort
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.IterationStrategyStack
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.OutputActivityPort
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.OutputPortBinding
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.OutputProcessorPort
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.OutputWorkflowPort
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.PortNode
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.Processor
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.ProcessorBinding
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.Profile
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.rdf.Description
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.roevo.VersionableResource
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.SeeAlsoType
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.Workflow
-
Gets the value of the about property.
- getAbout() - Method in class org.apache.taverna.scufl2.xml.WorkflowBundle
-
Gets the value of the about property.
- getAboutList() - Method in class org.apache.taverna.robundle.manifest.PathAnnotation
-
- getAboutObject() - Method in class org.apache.taverna.robundle.manifest.PathAnnotation
-
- getAcceptsHeaderValue() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
Gets the value of the acceptsHeaderValue property.
- getAction() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.CoordinationType
-
Gets the value of the action property.
- getActivateConfiguration() - Method in class org.apache.taverna.scufl2.xml.Profile
-
Gets the value of the activateConfiguration property.
- getActivities() - Method in class org.apache.taverna.scufl2.api.profiles.Profile
-
Returns the Activitys that this Profile
contains.
- getActivities() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Processor
-
Gets the value of the activities property.
- getActivity(Profile) - Method in class org.apache.taverna.scufl2.api.core.Processor
-
Get the activity bound to this processor in the given profile.
- getActivity() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Activities
-
Gets the value of the activity property.
- getActivityConfiguration(Profile) - Method in class org.apache.taverna.scufl2.api.core.Processor
-
Get the configuration of the activity bound to this processor in the
given profile.
- getActivityInputs() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
Gets the value of the activityInputs property.
- getActivityPosition() - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorBinding
-
Returns the relative position of the bound Activity within
the Processor (for the purpose of Failover).
- getActivityPosition() - Method in class org.apache.taverna.scufl2.xml.ProcessorBinding
-
Gets the value of the activityPosition property.
- getAddition() - Method in class org.apache.taverna.scufl2.xml.roevo.ChangeSpecification.HasChange
-
Gets the value of the addition property.
- getAdditionalSchemas() - Method in class org.apache.taverna.scufl2.translator.scufl.processorelement.AbstractProcessorExtensionParser
-
- getAdditionalSchemas() - Method in class org.apache.taverna.scufl2.translator.scufl.processorelement.ApiConsumerExtensionParser
-
- getAdditionalSchemas() - Method in class org.apache.taverna.scufl2.translator.scufl.processorelement.BeanshellExtensionParser
-
- getAdditionalSchemas() - Method in class org.apache.taverna.scufl2.translator.scufl.processorelement.BiomartExtensionParser
-
- getAdditionalSchemas() - Method in class org.apache.taverna.scufl2.translator.scufl.processorelement.BiomobyExtensionParser
-
- getAdditionalSchemas() - Method in class org.apache.taverna.scufl2.translator.scufl.processorelement.LocalExtensionParser
-
- getAdditionalSchemas() - Method in class org.apache.taverna.scufl2.translator.scufl.processorelement.RshellExtensionParser
-
- getAdditionalSchemas() - Method in class org.apache.taverna.scufl2.translator.scufl.processorelement.SoaplabExtensionParser
-
- getAdditionalSchemas() - Method in class org.apache.taverna.scufl2.translator.scufl.processorelement.StringConstantExtensionParser
-
- getAdditionalSchemas() - Method in class org.apache.taverna.scufl2.translator.scufl.processorelement.WsdlExtensionParser
-
- getAdditionalSchemas() - Method in interface org.apache.taverna.scufl2.translator.scufl.ScuflExtensionParser
-
- getAdditionalSchemas() - Method in class org.apache.taverna.scufl2.translator.scufl.ScuflParser
-
- getAdditionalSchemas() - Method in class org.apache.taverna.scufl2.translator.t2flow.defaultactivities.AbstractActivityParser
-
- getAdditionalSchemas() - Method in class org.apache.taverna.scufl2.translator.t2flow.t23activities.ExternalToolActivityParser
-
- getAdditionalSchemas() - Method in class org.apache.taverna.scufl2.translator.t2flow.t23activities.RESTActivityParser
-
- getAdditionalSchemas() - Method in class org.apache.taverna.scufl2.translator.t2flow.t23activities.XPathActivityParser
-
- getAdditionalSchemas() - Method in class org.apache.taverna.scufl2.translator.t2flow.T2FlowParser
-
- getAdditionalSchemas() - Method in interface org.apache.taverna.scufl2.translator.t2flow.T2Parser
-
- getAdditionOf() - Method in class org.apache.taverna.scufl2.api.annotation.Revision
-
- getAggregatedBy() - Method in class org.apache.taverna.robundle.manifest.Proxy
-
- getAggregatedOn() - Method in class org.apache.taverna.robundle.manifest.Proxy
-
- getAggregates() - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- getAggregation(Path) - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- getAggregation(URI) - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- getAlgorithm() - Method in class org.apache.taverna.robundle.xml.dsig.CanonicalizationMethodType
-
Gets the value of the algorithm property.
- getAlgorithm() - Method in class org.apache.taverna.robundle.xml.dsig.DigestMethodType
-
Gets the value of the algorithm property.
- getAlgorithm() - Method in class org.apache.taverna.robundle.xml.dsig.SignatureMethodType
-
Gets the value of the algorithm property.
- getAlgorithm() - Method in class org.apache.taverna.robundle.xml.dsig.TransformType
-
Gets the value of the algorithm property.
- getAlgorithm() - Method in class org.apache.taverna.robundle.xml.odf.manifest.EncryptionData
-
Gets the value of the algorithm property.
- getAlgorithm() - Method in class org.apache.taverna.robundle.xml.xenc.AgreementMethodType
-
Gets the value of the algorithm property.
- getAlgorithm() - Method in class org.apache.taverna.robundle.xml.xenc.EncryptionMethodType
-
Gets the value of the algorithm property.
- getAlgorithm() - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.EncryptionData
-
- getAlgorithmName() - Method in class org.apache.taverna.robundle.xml.odf.manifest.Algorithm
-
Gets the value of the algorithmName property.
- getAlternate() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ProcessorType
-
Gets the value of the alternate property.
- getAnnotatedAt() - Method in class org.apache.taverna.scufl2.api.annotation.Annotation
-
- getAnnotatedBy() - Method in class org.apache.taverna.scufl2.api.annotation.Annotation
-
- getAnnotation() - Method in class org.apache.taverna.robundle.manifest.PathAnnotation
-
Deprecated.
- getAnnotationAssertions() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotationChain.NetSfTavernaT2AnnotationAnnotationChainImpl
-
Gets the value of the annotationAssertions property.
- getAnnotationBean() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl
-
Gets the value of the annotationBean property.
- getAnnotationChainOrAnnotationChain22() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Annotations
-
Gets the value of the annotationChainOrAnnotationChain22 property.
- getAnnotations(Bundle) - Static method in class org.apache.taverna.robundle.Bundles
-
- getAnnotations() - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- getAnnotations() - Method in class org.apache.taverna.scufl2.api.common.AbstractNamed
-
Get all the annotations that pertain to this workflow element.
- getAnnotations() - Method in class org.apache.taverna.scufl2.api.container.WorkflowBundle
-
Get all the
- getAnnotations() - Method in class org.apache.taverna.scufl2.api.core.BlockingControlLink
-
Get all the annotations that pertain to this control link.
- getAnnotations() - Method in class org.apache.taverna.scufl2.api.core.DataLink
-
Get all the annotations that pertain to this datalink.
- getAnnotations() - Method in class org.apache.taverna.scufl2.api.iterationstrategy.PortNode
-
Get all the annotations that pertain to this port node.
- getAnnotations() - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorPortBinding
-
Get all the annotations that pertain to this port binding.
- getAnnotations() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Activity
-
Gets the value of the annotations property.
- getAnnotations() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotatedGranularDepthPort
-
Gets the value of the annotations property.
- getAnnotations() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotatedPort
-
Gets the value of the annotations property.
- getAnnotations() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Dataflow
-
Gets the value of the annotations property.
- getAnnotations() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Processor
-
Gets the value of the annotations property.
- getAnnotion() - Method in class org.apache.taverna.robundle.manifest.PathAnnotation
-
Deprecated.
- getAny() - Method in class org.apache.taverna.robundle.xml.odf.container.Relationship
-
Gets the value of the any property.
- getAny() - Method in class org.apache.taverna.robundle.xml.odf.container.RootFile
-
Gets the value of the any property.
- getAny() - Method in class org.apache.taverna.robundle.xml.odf.manifest.Algorithm
-
Gets the value of the any property.
- getAny() - Method in class org.apache.taverna.robundle.xml.xenc.ReferenceType
-
Gets the value of the any property.
- getAny() - Method in class org.apache.taverna.scufl2.xml.Configuration
-
Gets the value of the any property.
- getAny() - Method in class org.apache.taverna.scufl2.xml.rdf.Description
-
Gets the value of the any property.
- getAny() - Method in class org.apache.taverna.scufl2.xml.rdf.RDF
-
Gets the value of the any property.
- getAny() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomartType
-
Gets the value of the any property.
- getAny() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotationBean
-
Gets the value of the any property.
- getAny() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyCategory
-
Gets the value of the any property.
- getAny() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyServiceType
-
Gets the value of the any property.
- getAny() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.OriginalConfigBean
-
Gets the value of the any property.
- getAny5() - Method in class org.apache.taverna.robundle.xml.odf.container.Container
-
Gets the value of the any5 property.
- getAny7() - Method in class org.apache.taverna.robundle.xml.odf.container.Container
-
Gets the value of the any7 property.
- getAny9() - Method in class org.apache.taverna.robundle.xml.odf.container.Container
-
Gets the value of the any9 property.
- getAnyOrRelationship() - Method in class org.apache.taverna.robundle.xml.odf.container.Container.Relationships
-
Gets the value of the anyOrRelationship property.
- getAnyOrRootFile() - Method in class org.apache.taverna.robundle.xml.odf.container.Container.RootFiles
-
Gets the value of the anyOrRootFile property.
- getApiConsumerDescription() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Gets the value of the apiConsumerDescription property.
- getApiConsumerName() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Gets the value of the apiConsumerName property.
- getArraytype() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ElementtypeType
-
Gets the value of the arraytype property.
- getArraytype() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ExtensionsType
-
Gets the value of the arraytype property.
- getArticleName() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobyparserType
-
Gets the value of the articleName property.
- getArticleNameUsedByService() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyParserConfig
-
Gets the value of the articleNameUsedByService property.
- getArtifact() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArtifactType
-
Gets the value of the artifact property.
- getArtifact() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.DependenciesType
-
Gets the value of the artifact property.
- getArtifact() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Raven
-
Gets the value of the artifact property.
- getArtifactDependencies() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Gets the value of the artifactDependencies property.
- getArtifactDependencies() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
-
Gets the value of the artifactDependencies property.
- getArtifactId() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
-
Gets the value of the artifactId property.
- getAttribute(String) - Method in class org.apache.taverna.robundle.fs.BundleFileStore
-
- getAuthor() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.WorkflowDescriptionType
-
Gets the value of the author property.
- getAuthoredBy() - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- getAuthoredBy() - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
- getAuthoredOn() - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- getAuthoredOn() - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
- getAuthorityName() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobyobjectType
-
Gets the value of the authorityName property.
- getAuthorityName() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobywsdlType
-
Gets the value of the authorityName property.
- getAuthorityName() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyObjectConfig
-
Gets the value of the authorityName property.
- getBackoff() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.SoaplabwsdlType
-
Gets the value of the backoff property.
- getBackoffFactor() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RetryConfig
-
Gets the value of the backoffFactor property.
- getBase() - Method in class org.apache.taverna.scufl2.xml.rdf.RDF
-
Gets the value of the base property.
- getBasetype() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ElementtypeType
-
Gets the value of the basetype property.
- getBaseURI() - Method in class org.apache.taverna.robundle.fs.BundleFileSystem
-
- getBaseURI() - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- getBaseURI() - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
-
Get the URI, where this ODF package is stored.
- getBean() - Method in class org.apache.taverna.scufl2.validation.ValidationProblem
-
- getBean() - Method in interface org.apache.taverna.scufl2.validation.WorkflowBeanReport
-
- getBeanshellinput() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BeanshellinputlistType
-
Gets the value of the beanshellinput property.
- getBeanshellinputlist() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BeanshellType
-
Gets the value of the beanshellinputlist property.
- getBeanshelloutput() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BeanshelloutputlistType
-
Gets the value of the beanshelloutput property.
- getBeanshelloutputlist() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BeanshellType
-
Gets the value of the beanshelloutputlist property.
- getBeanToUri() - Method in class org.apache.taverna.scufl2.rdfxml.ParserState
-
- getBindActivity() - Method in class org.apache.taverna.scufl2.xml.ProcessorBinding
-
Gets the value of the bindActivity property.
- getBinding(Profile) - Method in class org.apache.taverna.scufl2.api.core.Processor
-
Get the binding for this processor in the given profile.
- getBindInputActivityPort() - Method in class org.apache.taverna.scufl2.xml.InputPortBinding
-
Gets the value of the bindInputActivityPort property.
- getBindInputProcessorPort() - Method in class org.apache.taverna.scufl2.xml.InputPortBinding
-
Gets the value of the bindInputProcessorPort property.
- getBindOutputActivityPort() - Method in class org.apache.taverna.scufl2.xml.OutputPortBinding
-
Gets the value of the bindOutputActivityPort property.
- getBindOutputProcessorPort() - Method in class org.apache.taverna.scufl2.xml.OutputPortBinding
-
Gets the value of the bindOutputProcessorPort property.
- getBindProcessor() - Method in class org.apache.taverna.scufl2.xml.ProcessorBinding
-
Gets the value of the bindProcessor property.
- getBlock() - Method in class org.apache.taverna.scufl2.api.core.BlockingControlLink
-
Returns the Processor that is blocked from starting.
- getBlock() - Method in class org.apache.taverna.scufl2.xml.Blocking
-
Gets the value of the block property.
- getBlocking() - Method in class org.apache.taverna.scufl2.xml.Control
-
Gets the value of the blocking property.
- getBody() - Method in class org.apache.taverna.scufl2.api.annotation.Annotation
-
- getBoring() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ProcessorType
-
Gets the value of the boring property.
- getBoundActivity() - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorBinding
-
Returns the Activity that will be used to enact the
Processor if this ProcessorBinding is used.
- getBoundActivityPort() - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorInputPortBinding
-
Returns the InputActivityPort to which data is actually sent
when passed to the bound InputProcessorPort.
- getBoundActivityPort() - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorOutputPortBinding
-
Returns the OutputActivityPort from which data is received
for the bound OutputProcessorPort.
- getBoundActivityPort() - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorPortBinding
-
- getBoundProcessor() - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorBinding
-
Returns the Processor for which a possible means of
enactment is specified.
- getBoundProcessorPort() - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorInputPortBinding
-
Returns the InputProcessorPort that the binding is for.
- getBoundProcessorPort() - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorOutputPortBinding
-
Returns the OutputProcessorPort that the binding is for.
- getBoundProcessorPort() - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorPortBinding
-
- getBoundProcessors() - Method in class org.apache.taverna.scufl2.api.activity.Activity
-
Get all processors that have a binding to this activity.
- getBreakpoint() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
-
Gets the value of the breakpoint property.
- getBreakpoint() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.LocalType
-
Gets the value of the breakpoint property.
- getBundle() - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- getBundledAs() - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
- getByName(String) - Method in class org.apache.taverna.scufl2.api.common.NamedSet
-
Return the element with the given name from the set.
- getBytes(String) - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
-
Get package (sub-) content as byte array
- getCanonicalizationMethod() - Method in class org.apache.taverna.robundle.xml.dsig.SignedInfoType
-
Gets the value of the canonicalizationMethod property.
- getCarriedKeyName() - Method in class org.apache.taverna.robundle.xml.xenc.EncryptedKeyType
-
Gets the value of the carriedKeyName property.
- getCategory() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyConfig
-
Gets the value of the category property.
- getCausedBy() - Method in class org.apache.taverna.databundle.ErrorDocument
-
- getChangeSpecification() - Method in class org.apache.taverna.scufl2.xml.roevo.VersionableResource.WasChangedBy
-
Gets the value of the changeSpecification property.
- getChangeSpecificationType() - Method in class org.apache.taverna.scufl2.api.annotation.Revision
-
- getCharsetName() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
-
Gets the value of the charsetName property.
- getCharsetName() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
-
Gets the value of the charsetName property.
- getCheck() - Method in class org.apache.taverna.tavlang.tools.validate.Validate
-
- getChecksum() - Method in class org.apache.taverna.robundle.xml.odf.manifest.EncryptionData
-
Gets the value of the checksum property.
- getChecksum() - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.EncryptionData
-
- getChecksumType() - Method in class org.apache.taverna.robundle.xml.odf.manifest.EncryptionData
-
Gets the value of the checksumType property.
- getChecksumType() - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.EncryptionData
-
- getChild() - Method in class org.apache.taverna.baclava.RelationType
-
Gets the value of the child property.
- getCipherData() - Method in class org.apache.taverna.robundle.xml.xenc.EncryptedType
-
Gets the value of the cipherData property.
- getCipherReference() - Method in class org.apache.taverna.robundle.xml.xenc.CipherDataType
-
Gets the value of the cipherReference property.
- getCipherValue() - Method in class org.apache.taverna.robundle.xml.xenc.CipherDataType
-
Gets the value of the cipherValue property.
- getClassloader() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.DependenciesType
-
Gets the value of the classloader property.
- getClassLoaderSharing() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Gets the value of the classLoaderSharing property.
- getClassLoaderSharing() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
-
Gets the value of the classLoaderSharing property.
- getClassName() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Gets the value of the className property.
- getClazz() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
-
Gets the value of the clazz property.
- getClazz() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Activity
-
Gets the value of the clazz property.
- getClazz() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ActivityPortDefinitionBean.MimeTypes
-
Gets the value of the clazz property.
- getClazz() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotationBean
-
Gets the value of the clazz property.
- getClazz() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Dependencies
-
Gets the value of the clazz property.
- getClazz() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.DependencyElement
-
Gets the value of the clazz property.
- getClazz() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.DispatchLayer
-
Gets the value of the clazz property.
- getClazz() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic.Content
-
Gets the value of the clazz property.
- getCloned(T) - Method in class org.apache.taverna.scufl2.api.common.AbstractCloneable.Cloning
-
- getColumnNames() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
-
Gets the value of the columnNames property.
- getColumnRange() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
-
Gets the value of the columnRange property.
- getCommand() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Gets the value of the command property.
- getComplextype() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ElementtypeType
-
Gets the value of the complextype property.
- getComplextype() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ExtensionsType
-
Gets the value of the complextype property.
- getComplextypeOrArraytypeOrBasetype() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ElementsType
-
Gets the value of the complextypeOrArraytypeOrBasetype property.
- getComponentName() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ComponentConfig
-
Gets the value of the componentName property.
- getComponentVersion() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ComponentConfig
-
Gets the value of the componentVersion property.
- getCondition() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.CoordinationType
-
Gets the value of the condition property.
- getCondition() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Conditions
-
Gets the value of the condition property.
- getConditions() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Dataflow
-
Gets the value of the conditions property.
- getConditionXML() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.LoopConfig
-
Gets the value of the conditionXML property.
- getConfigBean() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Activity
-
Gets the value of the configBean property.
- getConfigBean() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.DispatchLayer
-
Gets the value of the configBean property.
- getConfigurable() - Method in class org.apache.taverna.scufl2.validation.correctness.report.MismatchConfigurableTypeProblem
-
- getConfiguration() - Method in class org.apache.taverna.scufl2.api.activity.Activity
-
Get the configuration for this activity.
- getConfiguration(Profile) - Method in class org.apache.taverna.scufl2.api.core.Processor
-
Find the configuration of this processor in a profile.
- getConfigurations() - Method in class org.apache.taverna.scufl2.api.activity.Activity
-
Get all the configurations that are associated with this activity.
- getConfigurations(Profile) - Method in class org.apache.taverna.scufl2.api.core.Processor
-
Find all configurations of this processor in a profile.
- getConfigurations() - Method in class org.apache.taverna.scufl2.api.profiles.Profile
-
Returns the Configurations that this Profile
contains.
- getConfigure() - Method in class org.apache.taverna.scufl2.xml.Configuration
-
Gets the value of the configure property.
- getConfigures() - Method in class org.apache.taverna.scufl2.api.configurations.Configuration
-
- getConformsTo() - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
- getConnectionSettings() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
-
Gets the value of the connectionSettings property.
- getConstants(Workflow, Profile) - Method in class org.apache.taverna.scufl2.api.common.Scufl2Tools
-
- getConstantStringValue(Processor, Profile) - Method in class org.apache.taverna.scufl2.api.common.Scufl2Tools
-
- getConstructor() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MethodType
-
Gets the value of the constructor property.
- getContainerXML() - Method in class org.apache.taverna.scufl2.ucfpackage.UCFPackage
-
- getContent() - Method in class org.apache.taverna.robundle.manifest.PathAnnotation
-
- getContent() - Method in class org.apache.taverna.robundle.xml.combine.OmexManifest
-
Gets the value of the content property.
- getContent() - Method in class org.apache.taverna.robundle.xml.dsig.CanonicalizationMethodType
-
Gets the value of the content property.
- getContent() - Method in class org.apache.taverna.robundle.xml.dsig.DigestMethodType
-
Gets the value of the content property.
- getContent() - Method in class org.apache.taverna.robundle.xml.dsig.KeyInfoType
-
Gets the value of the content property.
- getContent() - Method in class org.apache.taverna.robundle.xml.dsig.KeyValueType
-
Gets the value of the content property.
- getContent() - Method in class org.apache.taverna.robundle.xml.dsig.ObjectType
-
Gets the value of the content property.
- getContent() - Method in class org.apache.taverna.robundle.xml.dsig.PGPDataType
-
Gets the rest of the content model.
- getContent() - Method in class org.apache.taverna.robundle.xml.dsig.SignatureMethodType
-
Gets the value of the content property.
- getContent() - Method in class org.apache.taverna.robundle.xml.dsig.SignaturePropertyType
-
Gets the value of the content property.
- getContent() - Method in class org.apache.taverna.robundle.xml.dsig.TransformType
-
Gets the value of the content property.
- getContent() - Method in class org.apache.taverna.robundle.xml.xenc.AgreementMethodType
-
Gets the value of the content property.
- getContent() - Method in class org.apache.taverna.robundle.xml.xenc.EncryptionMethodType
-
Gets the value of the content property.
- getContent() - Method in class org.apache.taverna.robundle.xml.xenc.EncryptionPropertyType
-
Gets the value of the content property.
- getContent() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.AbstractprocessorType
-
Gets the value of the content property.
- getContent() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.LocalType
-
Gets the value of the content property.
- getContent() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellType
-
Gets the value of the content property.
- getContent() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.HTTPHeaders.List
-
Gets the rest of the content model.
- getContent() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
-
Gets the value of the content property.
- getContent() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.XPathNamespaceMap.Entry
-
Gets the rest of the content model.
- getContentTypeForUpdates() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
Gets the value of the contentTypeForUpdates property.
- getContext() - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- getControl() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Condition
-
Gets the value of the control property.
- getControl() - Method in class org.apache.taverna.scufl2.xml.Workflow
-
Gets the value of the control property.
- getControlLinks() - Method in class org.apache.taverna.scufl2.api.core.Workflow
-
Returns the ControlLinks.
- getCoordination() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ScuflType
-
Gets the value of the coordination property.
- getCreatedBy() - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- getCreatedBy() - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
- getCreatedOn() - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- getCreatedOn() - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
- getCreator(Child<?>) - Method in class org.apache.taverna.scufl2.annotation.AnnotationTools
-
- getCreators() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl
-
Gets the value of the creators property.
- getCritical() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
-
Gets the value of the critical property.
- getCritical() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.LocalType
-
Gets the value of the critical property.
- getCross() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.CrossType
-
Gets the value of the cross property.
- getCross() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.DotType
-
Gets the value of the cross property.
- getCross() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.IterationstrategyType
-
Gets the value of the cross property.
- getCross() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.TopIterationNode
-
Gets the value of the cross property.
- getCrossOrDotOrPort() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.IterationNodeParent
-
Gets the value of the crossOrDotOrPort property.
- getCrossProductOrDotProductOrPortNode() - Method in class org.apache.taverna.scufl2.xml.ProductOf
-
Gets the value of the crossProductOrDotProductOrPortNode property.
- getCsvDelimiter() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
-
Gets the value of the csvDelimiter property.
- getCurationEventList() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl
-
Gets the value of the curationEventList property.
- getCurrent(Class<T>) - Method in class org.apache.taverna.scufl2.rdfxml.ParserState
-
- getCurrentActivity() - Method in class org.apache.taverna.scufl2.translator.scufl.ParserState
-
- getCurrentActivity() - Method in class org.apache.taverna.scufl2.translator.t2flow.ParserState
-
- getCurrentBase() - Method in class org.apache.taverna.scufl2.rdfxml.ParserState
-
- getCurrentConfigurable() - Method in class org.apache.taverna.scufl2.translator.t2flow.ParserState
-
- getCurrentConfiguration() - Method in class org.apache.taverna.scufl2.translator.t2flow.ParserState
-
- getCurrentExtensionParser() - Method in class org.apache.taverna.scufl2.translator.scufl.ParserState
-
- getCurrentNode() - Method in class org.apache.taverna.scufl2.api.common.Visitor.VisitorWithPath
-
- getCurrentParser() - Method in class org.apache.taverna.scufl2.translator.scufl.ParserState
-
- getCurrentPath() - Method in class org.apache.taverna.scufl2.api.common.Visitor.VisitorWithPath
-
- getCurrentProcessor() - Method in class org.apache.taverna.scufl2.translator.scufl.ParserState
-
- getCurrentProcessor() - Method in class org.apache.taverna.scufl2.translator.t2flow.ParserState
-
- getCurrentProcessorBinding() - Method in class org.apache.taverna.scufl2.translator.t2flow.ParserState
-
- getCurrentProfile() - Method in class org.apache.taverna.scufl2.translator.scufl.ParserState
-
- getCurrentProfile() - Method in class org.apache.taverna.scufl2.translator.t2flow.ParserState
-
- getCurrentRevision() - Method in interface org.apache.taverna.scufl2.api.annotation.Revisioned
-
Get the current Revision metadata.
- getCurrentRevision() - Method in class org.apache.taverna.scufl2.api.common.AbstractRevisioned
-
- getCurrentT2Parser() - Method in class org.apache.taverna.scufl2.translator.t2flow.ParserState
-
- getCurrentWorkflow() - Method in class org.apache.taverna.scufl2.translator.scufl.ParserState
-
- getCurrentWorkflow() - Method in class org.apache.taverna.scufl2.translator.t2flow.ParserState
-
- getCurrentWorkflowBundle() - Method in class org.apache.taverna.scufl2.translator.scufl.ParserState
-
- getCurrentWorkflowBundle() - Method in class org.apache.taverna.scufl2.translator.t2flow.ParserState
-
- getDataElement() - Method in class org.apache.taverna.baclava.ItemListType
-
Gets the value of the dataElement property.
- getDataElement() - Method in class org.apache.taverna.baclava.MyGridDataDocumentType
-
Gets the value of the dataElement property.
- getDataElementData() - Method in class org.apache.taverna.baclava.DataElementType
-
Gets the value of the dataElementData property.
- getDataflow() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Workflow
-
Gets the value of the dataflow property.
- getDataLink() - Method in class org.apache.taverna.scufl2.xml.DataLinkEntry
-
Gets the value of the dataLink property.
- getDatalink() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Datalinks
-
Gets the value of the datalink property.
- getDatalink() - Method in class org.apache.taverna.scufl2.xml.Workflow
-
Gets the value of the datalink property.
- getDataLinkResolvedDepth(DataLink) - Method in class org.apache.taverna.scufl2.validation.structural.ValidatorState
-
- getDataLinks() - Method in class org.apache.taverna.scufl2.api.core.Workflow
-
Returns the DataLinks.
- getDatalinks() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Dataflow
-
Gets the value of the datalinks property.
- getDatalinksFrom() - Method in class org.apache.taverna.scufl2.api.port.InputWorkflowPort
-
Get the datalinks leading from this port.
- getDatalinksFrom() - Method in class org.apache.taverna.scufl2.api.port.OutputProcessorPort
-
Get the datalinks leading from this port.
- getDatalinksTo() - Method in class org.apache.taverna.scufl2.api.port.InputProcessorPort
-
Get the datalinks leading to this port.
- getDatalinksTo() - Method in class org.apache.taverna.scufl2.api.port.OutputWorkflowPort
-
Get the datalinks leading to this port.
- getDataReferenceOrKeyReference() - Method in class org.apache.taverna.robundle.xml.xenc.ReferenceList
-
Gets the value of the dataReferenceOrKeyReference property.
- getDataThing() - Method in class org.apache.taverna.baclava.DataThingMapType
-
Gets the value of the dataThing property.
- getDatatype() - Method in class org.apache.taverna.scufl2.xml.DataLink.MergePosition
-
Gets the value of the datatype property.
- getDatatype() - Method in class org.apache.taverna.scufl2.xml.GranularPortDepth
-
Gets the value of the datatype property.
- getDatatype() - Method in class org.apache.taverna.scufl2.xml.PortDepth
-
Gets the value of the datatype property.
- getDatatype() - Method in class org.apache.taverna.scufl2.xml.PortNode.DesiredDepth
-
Gets the value of the datatype property.
- getDatatype() - Method in class org.apache.taverna.scufl2.xml.ProcessorBinding.ActivityPosition
-
Gets the value of the datatype property.
- getDatatype() - Method in class org.apache.taverna.scufl2.xml.prov.GeneratedAtTime
-
Gets the value of the datatype property.
- getDatatype() - Method in class org.apache.taverna.scufl2.xml.Required
-
Gets the value of the datatype property.
- getDatatype() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobyparserType
-
Gets the value of the datatype property.
- getDatatypeName() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyParserConfig
-
Gets the value of the datatypeName property.
- getDate() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl
-
Gets the value of the date property.
- getDefault(KeyType) - Method in class org.apache.taverna.scufl2.api.impl.LazyMap
-
- getDefault() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.DefaultsType
-
Gets the value of the default property.
- getDefaults() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ProcessorType
-
Gets the value of the defaults property.
- getDependencies() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
-
Gets the value of the dependencies property.
- getDependencies() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BeanshellType
-
Gets the value of the dependencies property.
- getDependencies() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
-
Gets the value of the dependencies property.
- getDepth() - Method in class org.apache.taverna.scufl2.api.port.AbstractDepthPort
-
Returns the depth of the Port.
- getDepth() - Method in interface org.apache.taverna.scufl2.api.port.DepthPort
-
Returns the depth of the Port.
- getDepth() - Method in class org.apache.taverna.scufl2.validation.correctness.report.IncompatibleGranularDepthProblem
-
- getDepth() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.FlattenlistType
-
Gets the value of the depth property.
- getDepth() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.SlicelistType
-
Gets the value of the depth property.
- getDepth() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.DepthPort
-
Gets the value of the depth property.
- getDepth() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.PortProduct
-
Gets the value of the depth property.
- getDescription(Child<?>) - Method in class org.apache.taverna.scufl2.annotation.AnnotationTools
-
- getDescription() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
-
Gets the value of the description property.
- getDescription() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobyparserType
-
Gets the value of the description property.
- getDescription() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MetadataType
-
Gets the value of the description property.
- getDescription() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ProcessorType
-
Gets the value of the description property.
- getDescription() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Gets the value of the description property.
- getDescription() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Gets the value of the description property.
- getDesiredDepth() - Method in class org.apache.taverna.scufl2.api.iterationstrategy.PortNode
-
- getDesiredDepth() - Method in class org.apache.taverna.scufl2.xml.PortNode
-
Gets the value of the desiredDepth property.
- getDeUniLuebeckInbKnowarcUsecasesScriptInputStatic() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.StaticInputs
-
Gets the value of the deUniLuebeckInbKnowarcUsecasesScriptInputStatic property.
- getDeUniLuebeckInbKnowarcUsecasesScriptInputUser() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Entry
-
Gets the value of the deUniLuebeckInbKnowarcUsecasesScriptInputUser property.
- getDeUniLuebeckInbKnowarcUsecasesScriptOutput() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Entry
-
Gets the value of the deUniLuebeckInbKnowarcUsecasesScriptOutput property.
- getDigestMethod() - Method in class org.apache.taverna.robundle.xml.dsig.ReferenceType
-
Gets the value of the digestMethod property.
- getDigestValue() - Method in class org.apache.taverna.robundle.xml.dsig.ReferenceType
-
Gets the value of the digestValue property.
- getDimension() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ApiConsumerParameterType
-
Gets the value of the dimension property.
- getDimension() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MethodType
-
Gets the value of the dimension property.
- getDispatchConfigs() - Method in class org.apache.taverna.scufl2.rdfxml.ParserState
-
- getDispatchLayer() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.DispatchStack
-
Gets the value of the dispatchLayer property.
- getDispatchStack() - Method in class org.apache.taverna.scufl2.xml.Processor.DispatchStack
-
Gets the value of the dispatchStack property.
- getDispatchStack() - Method in class org.apache.taverna.scufl2.xml.Processor
-
Gets the value of the dispatchStack property.
- getDispatchStack() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Processor
-
Gets the value of the dispatchStack property.
- getDispatchStackLayer() - Method in class org.apache.taverna.scufl2.xml.DispatchStack.DispatchStackLayers
-
Gets the value of the dispatchStackLayer property.
- getDispatchStackLayers() - Method in class org.apache.taverna.scufl2.xml.DispatchStack
-
Gets the value of the dispatchStackLayers property.
- getDom(String) - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
-
Gets org.w3c.dom.Document for XML file contained in package.
- getDot() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.CrossType
-
Gets the value of the dot property.
- getDot() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.DotType
-
Gets the value of the dot property.
- getDot() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.IterationstrategyType
-
Gets the value of the dot property.
- getDot() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.TopIterationNode
-
Gets the value of the dot property.
- getDotProductIterationDepth(DotProduct, Map<InputProcessorPort, Integer>) - Method in class org.apache.taverna.scufl2.validation.structural.StructuralValidator
-
- getDotProductIterationMismatches() - Method in class org.apache.taverna.scufl2.validation.structural.ReportStructuralValidationListener
-
- getDotProductOrCrossProduct() - Method in class org.apache.taverna.scufl2.xml.IterationStrategyStack.IterationStrategies
-
Gets the value of the dotProductOrCrossProduct property.
- getDownStream() - Method in class org.apache.taverna.scufl2.api.common.Scufl2Tools.ProcessorSplit
-
Processors that are downstream from the split point.
- getDuplicateNode() - Method in class org.apache.taverna.scufl2.validation.correctness.report.PortMentionedTwiceProblem
-
- getElement() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ActivityPortDefinitionBean.MimeTypes
-
Gets the value of the element property.
- getElement() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Dependencies
-
Gets the value of the element property.
- getElements() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
-
Gets the value of the elements property.
- getElementtype() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
-
Gets the value of the elementtype property.
- getEmptyCellPolicy() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
-
Gets the value of the emptyCellPolicy property.
- getEmptyCellValue() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
-
Gets the value of the emptyCellValue property.
- getEmptyCrossProducts() - Method in class org.apache.taverna.scufl2.validation.structural.ReportStructuralValidationListener
-
- getEmptyDotProducts() - Method in class org.apache.taverna.scufl2.validation.structural.ReportStructuralValidationListener
-
- getEmptyIterationStrategyTopNodeProblems() - Method in class org.apache.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
-
- getEncoding() - Method in class org.apache.taverna.robundle.xml.dsig.ObjectType
-
Gets the value of the encoding property.
- getEncoding() - Method in class org.apache.taverna.robundle.xml.xenc.EncryptedType
-
Gets the value of the encoding property.
- getEncoding() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotationChain
-
Gets the value of the encoding property.
- getEncoding() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.OriginalConfigBean
-
Gets the value of the encoding property.
- getEncryptedDataOrEncryptedKey() - Method in class org.apache.taverna.robundle.xml.odf.container.Container.Encryption
-
Gets the value of the encryptedDataOrEncryptedKey property.
- getEncryption() - Method in class org.apache.taverna.robundle.xml.odf.container.Container
-
Gets the value of the encryption property.
- getEncryptionData() - Method in class org.apache.taverna.robundle.xml.odf.manifest.FileEntry
-
Gets the value of the encryptionData property.
- getEncryptionData() - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.OdfFileEntry
-
- getEncryptionMethod() - Method in class org.apache.taverna.robundle.xml.xenc.EncryptedType
-
Gets the value of the encryptionMethod property.
- getEncryptionProperties() - Method in class org.apache.taverna.robundle.xml.xenc.EncryptedType
-
Gets the value of the encryptionProperties property.
- getEncryptionProperty() - Method in class org.apache.taverna.robundle.xml.xenc.EncryptionPropertiesType
-
Gets the value of the encryptionProperty property.
- getEnd() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetRange
-
Gets the value of the end property.
- getEndpoint() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobyparserType
-
Gets the value of the endpoint property.
- getEndpoint() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SoaplabConfig
-
Gets the value of the endpoint property.
- getEntityResolver() - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
-
Get EntityResolver to be used in XML Parsers which can resolve content
inside the OdfPackage
- getEntry() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ActivityInputs
-
Gets the value of the entry property.
- getEntry() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobySecondaries
-
Gets the value of the entry property.
- getEntry() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.EntryMap
-
Gets the value of the entry property.
- getEntry() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetColumnNames
-
Gets the value of the entry property.
- getEntry() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.XPathNamespaceMap
-
Gets the value of the entry property.
- getError(Path) - Static method in class org.apache.taverna.databundle.DataBundles
-
- getErrorList() - Method in class org.apache.taverna.robundle.validator.ValidationReport
-
- getErrorList_l() - Method in class org.apache.taverna.robundle.validator.ValidationReport
-
- getEscapeParameters() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
Gets the value of the escapeParameters property.
- getEventListener() - Method in class org.apache.taverna.scufl2.validation.structural.ValidatorState
-
- getExampleValue(Child<?>) - Method in class org.apache.taverna.scufl2.annotation.AnnotationTools
-
- getException() - Method in class org.apache.taverna.scufl2.validation.correctness.DefaultCorrectnessValidationListener
-
- getException() - Method in class org.apache.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
-
- getException() - Method in class org.apache.taverna.scufl2.validation.structural.DefaultStructuralValidationListener
-
- getException() - Method in class org.apache.taverna.scufl2.validation.structural.ReportStructuralValidationListener
-
- getException() - Method in interface org.apache.taverna.scufl2.validation.ValidationReport
-
- getExclude() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetExcludes
-
Gets the value of the exclude property.
- getExcludes() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetRange
-
Gets the value of the excludes property.
- getExecutionTimeoutInSeconds() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Gets the value of the executionTimeoutInSeconds property.
- getExponent() - Method in class org.apache.taverna.robundle.xml.dsig.RSAKeyValueType
-
Gets the value of the exponent property.
- getExternaltoolid() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
-
Gets the value of the externaltoolid property.
- getFailedProcessors() - Method in class org.apache.taverna.scufl2.validation.structural.ReportStructuralValidationListener
-
- getFamilyName() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ComponentConfig
-
Gets the value of the familyName property.
- getFieldName() - Method in class org.apache.taverna.scufl2.validation.correctness.report.NegativeValueProblem
-
- getFieldName() - Method in class org.apache.taverna.scufl2.validation.correctness.report.NonAbsoluteURIProblem
-
- getFieldName() - Method in class org.apache.taverna.scufl2.validation.correctness.report.NullFieldProblem
-
- getFieldName() - Method in class org.apache.taverna.scufl2.validation.correctness.report.OutOfScopeValueProblem
-
- getFieldValue() - Method in class org.apache.taverna.scufl2.validation.correctness.report.NegativeValueProblem
-
- getFieldValue() - Method in class org.apache.taverna.scufl2.validation.correctness.report.NonAbsoluteURIProblem
-
- getFile() - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
- getFileAttributeView(Path, Class<V>, LinkOption...) - Method in class org.apache.taverna.robundle.fs.BundleFileSystemProvider
-
- getFileEntries() - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
-
Get a OdfFileEntries from the manifest file (i.e.
- getFileEntry() - Method in class org.apache.taverna.robundle.xml.odf.manifest.Manifest
-
Gets the value of the fileEntry property.
- getFileEntry(String) - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
-
Get an OdfFileEntry for the packagePath NOTE: This method should be
better moved to a DOM inherited Manifest class
- getFileName() - Method in class org.apache.taverna.robundle.fs.BundlePath
-
- getFilename() - Method in class org.apache.taverna.robundle.manifest.Proxy
-
- getFileStore() - Method in class org.apache.taverna.robundle.fs.BundleFileSystem
-
- getFileStore(Path) - Method in class org.apache.taverna.robundle.fs.BundleFileSystemProvider
-
- getFileStoreAttributeView(Class<V>) - Method in class org.apache.taverna.robundle.fs.BundleFileStore
-
- getFileStores() - Method in class org.apache.taverna.robundle.fs.BundleFileSystem
-
- getFileSystem() - Method in class org.apache.taverna.robundle.Bundle
-
- getFileSystem(URI) - Method in class org.apache.taverna.robundle.fs.BundleFileSystemProvider
-
- getFileSystem() - Method in class org.apache.taverna.robundle.fs.BundlePath
-
- getFlattenlist() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ExtensionsType
-
Gets the value of the flattenlist property.
- getFolder() - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
Deprecated.
- getFolder() - Method in class org.apache.taverna.robundle.manifest.Proxy
-
- getFormat() - Method in class org.apache.taverna.robundle.xml.combine.Content
-
Gets the value of the format property.
- getFrom() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.StatechangeType
-
Gets the value of the from property.
- getFrom() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Mapping
-
Gets the value of the from property.
- getFromVersion() - Method in class org.apache.taverna.scufl2.xml.roevo.ChangeSpecification
-
Gets the value of the fromVersion property.
- getFullPath() - Method in class org.apache.taverna.robundle.xml.odf.container.RootFile
-
Gets the value of the fullPath property.
- getFullPath() - Method in class org.apache.taverna.robundle.xml.odf.manifest.FileEntry
-
Gets the value of the fullPath property.
- getG() - Method in class org.apache.taverna.robundle.xml.dsig.DSAKeyValueType
-
Gets the value of the g property.
- getGeneratedAtTime() - Method in class org.apache.taverna.scufl2.api.annotation.Revision
-
- getGeneratedAtTime() - Method in class org.apache.taverna.scufl2.xml.roevo.VersionableResource
-
Gets the value of the generatedAtTime property.
- getGlobalBaseURI() - Method in interface org.apache.taverna.scufl2.api.common.Root
-
- getGlobalBaseURI() - Method in class org.apache.taverna.scufl2.api.container.WorkflowBundle
-
- getGlobalBaseURI() - Method in class org.apache.taverna.scufl2.xml.WorkflowBundle
-
Gets the value of the globalBaseURI property.
- getGranularDepth() - Method in class org.apache.taverna.scufl2.api.port.AbstractGranularDepthPort
-
Returns the granular depth of the Port.
- getGranularDepth() - Method in interface org.apache.taverna.scufl2.api.port.GranularDepthPort
-
Returns the granular depth of the Port.
- getGranularDepth() - Method in class org.apache.taverna.scufl2.validation.correctness.report.IncompatibleGranularDepthProblem
-
- getGranularDepth() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.GranularDepthPort
-
Gets the value of the granularDepth property.
- getGranularPortDepth() - Method in class org.apache.taverna.scufl2.xml.OutputActivityPort
-
Gets the value of the granularPortDepth property.
- getGranularPortDepth() - Method in class org.apache.taverna.scufl2.xml.OutputProcessorPort
-
Gets the value of the granularPortDepth property.
- getGraph() - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- getGroup() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
-
Gets the value of the group property.
- getGroup() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Raven
-
Gets the value of the group property.
- getGroup() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Gets the value of the group property.
- getGroupId() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArtifactType
-
Gets the value of the groupId property.
- getGroupId() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
-
Gets the value of the groupId property.
- getHadOriginalSource() - Method in class org.apache.taverna.scufl2.xml.roevo.VersionableResource
-
Gets the value of the hadOriginalSource property.
- getHadOriginalSources() - Method in class org.apache.taverna.scufl2.api.annotation.Revision
-
- getHandledReferenceSchemesOrTranslatedElementTypeOrName() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ActivityPortDefinitionBean
-
Gets the value of the handledReferenceSchemesOrTranslatedElementTypeOrName property.
- getHasChange() - Method in class org.apache.taverna.scufl2.xml.roevo.ChangeSpecification
-
Gets the value of the hasChange property.
- getHashCode() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
-
Gets the value of the hashCode property.
- getHistory() - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- getHost() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.InfernoType
-
Gets the value of the host property.
- getHost() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
-
Gets the value of the host property.
- getHostname() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellType
-
Gets the value of the hostname property.
- getHttpMethod() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
Gets the value of the httpMethod property.
- getId() - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- getId() - Method in class org.apache.taverna.robundle.xml.dsig.KeyInfoType
-
Gets the value of the id property.
- getId() - Method in class org.apache.taverna.robundle.xml.dsig.ManifestType
-
Gets the value of the id property.
- getId() - Method in class org.apache.taverna.robundle.xml.dsig.ObjectType
-
Gets the value of the id property.
- getId() - Method in class org.apache.taverna.robundle.xml.dsig.ReferenceType
-
Gets the value of the id property.
- getId() - Method in class org.apache.taverna.robundle.xml.dsig.SignaturePropertiesType
-
Gets the value of the id property.
- getId() - Method in class org.apache.taverna.robundle.xml.dsig.SignaturePropertyType
-
Gets the value of the id property.
- getId() - Method in class org.apache.taverna.robundle.xml.dsig.SignatureType
-
Gets the value of the id property.
- getId() - Method in class org.apache.taverna.robundle.xml.dsig.SignatureValueType
-
Gets the value of the id property.
- getId() - Method in class org.apache.taverna.robundle.xml.dsig.SignedInfoType
-
Gets the value of the id property.
- getId() - Method in class org.apache.taverna.robundle.xml.xenc.EncryptedType
-
Gets the value of the id property.
- getId() - Method in class org.apache.taverna.robundle.xml.xenc.EncryptionPropertiesType
-
Gets the value of the id property.
- getId() - Method in class org.apache.taverna.robundle.xml.xenc.EncryptionPropertyType
-
Gets the value of the id property.
- getId() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
-
Gets the value of the id property.
- getId() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
-
Gets the value of the id property.
- getId() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Dataflow
-
Gets the value of the id property.
- getIdentifier() - Method in class org.apache.taverna.scufl2.api.annotation.Revision
-
- getIdentifier() - Method in interface org.apache.taverna.scufl2.api.annotation.Revisioned
-
Returns the identifier of this bean.
- getIdentifier() - Method in class org.apache.taverna.scufl2.api.common.AbstractRevisioned
-
Returns the identifier.
- getIdentifierRoot() - Method in class org.apache.taverna.scufl2.api.common.AbstractRevisioned
-
- getIdentifierRoot() - Method in class org.apache.taverna.scufl2.api.container.WorkflowBundle
-
- getIdentifierRoot() - Method in class org.apache.taverna.scufl2.api.core.Workflow
-
- getIdentifierRoot() - Method in class org.apache.taverna.scufl2.api.profiles.Profile
-
- getIncomingDataLinks(ReceiverPort) - Method in class org.apache.taverna.scufl2.validation.structural.ValidatorState
-
- getIncompatibleGranularDepthProblems() - Method in class org.apache.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
-
- getIncompleteWorkflows() - Method in class org.apache.taverna.scufl2.validation.structural.ReportStructuralValidationListener
-
- getIndex() - Method in class org.apache.taverna.baclava.DataElementType
-
Gets the value of the index property.
- getIndex() - Method in class org.apache.taverna.baclava.PartialOrderType
-
Gets the value of the index property.
- getInFile() - Static method in class org.apache.taverna.tavlang.CommandLineTool.Optional
-
- getInfoWarnings() - Method in class org.apache.taverna.robundle.validator.ValidationReport
-
- getInfoWarnings_l() - Method in class org.apache.taverna.robundle.validator.ValidationReport
-
- getInitialDelay() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RetryConfig
-
Gets the value of the initialDelay property.
- getInitialisationVector() - Method in class org.apache.taverna.robundle.xml.odf.manifest.Algorithm
-
Gets the value of the initialisationVector property.
- getInitializationVector() - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.Algorithm
-
- getInput() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.LinkType
-
Gets the value of the input property.
- getInput() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MergemodeType
-
Gets the value of the input property.
- getInputActivityPort() - Method in class org.apache.taverna.scufl2.xml.Activity
-
Gets the value of the inputActivityPort property.
- getInputActivityPort() - Method in class org.apache.taverna.scufl2.xml.Activity.InputActivityPort
-
Gets the value of the inputActivityPort property.
- getInputmap() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.AlternateType
-
Gets the value of the inputmap property.
- getInputMap() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Activity
-
Gets the value of the inputMap property.
- getInputPort() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.InputPortListType
-
Gets the value of the inputPort property.
- getInputPortBinding() - Method in class org.apache.taverna.scufl2.xml.ProcessorBinding
-
Gets the value of the inputPortBinding property.
- getInputPortBinding() - Method in class org.apache.taverna.scufl2.xml.ProcessorBinding.InputPortBinding
-
Gets the value of the inputPortBinding property.
- getInputPortBindings() - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorBinding
-
Returns the bindings for individual input ports of the bound
Processor.
- getInputPorts() - Method in class org.apache.taverna.scufl2.api.activity.Activity
-
Returns the InputActivityPorts.
- getInputPorts() - Method in interface org.apache.taverna.scufl2.api.common.Ported
-
- getInputPorts() - Method in class org.apache.taverna.scufl2.api.core.Processor
-
Returns the NamedSet of input ports.
- getInputPorts() - Method in class org.apache.taverna.scufl2.api.core.Workflow
-
Returns the InputWorkflowPorts.
- getInputPorts() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Dataflow
-
Gets the value of the inputPorts property.
- getInputPorts() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Processor
-
Gets the value of the inputPorts property.
- getInputProcessorPort() - Method in class org.apache.taverna.scufl2.api.iterationstrategy.PortNode
-
- getInputProcessorPort() - Method in class org.apache.taverna.scufl2.xml.Processor
-
Gets the value of the inputProcessorPort property.
- getInputProcessorPort() - Method in class org.apache.taverna.scufl2.xml.Processor.InputProcessorPort
-
Gets the value of the inputProcessorPort property.
- getInputs(Bundle) - Static method in class org.apache.taverna.databundle.DataBundles
-
- getInputs() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Gets the value of the inputs property.
- getInputs() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
-
Gets the value of the inputs property.
- getInputs() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.InteractionConfig
-
Gets the value of the inputs property.
- getInputs() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
-
Gets the value of the inputs property.
- getInputs() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Gets the value of the inputs property.
- getInputs() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.XMLSplitterConfig
-
Gets the value of the inputs property.
- getInputStream(String) - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
-
Get subcontent as InputStream
- getInputStream() - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
-
Gets the InputStream containing whole OdfPackage.
- getInputSymanticTypes() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
-
Gets the value of the inputSymanticTypes property.
- getInputWorkflowPort() - Method in class org.apache.taverna.scufl2.xml.Workflow
-
Gets the value of the inputWorkflowPort property.
- getInputWorkflowPort() - Method in class org.apache.taverna.scufl2.xml.Workflow.InputWorkflowPort
-
Gets the value of the inputWorkflowPort property.
- getInstance() - Static method in class org.apache.taverna.robundle.fs.BundleFileSystemProvider
-
- getInt() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerParameterDimensions
-
Gets the value of the int property.
- getInt() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ReturnCodes
-
Gets the value of the int property.
- getInteractionActivityType() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.InteractionConfig
-
Gets the value of the interactionActivityType property.
- getIntermediate(Bundle, UUID) - Static method in class org.apache.taverna.databundle.DataBundles
-
- getIntermediates(Bundle) - Static method in class org.apache.taverna.databundle.DataBundles
-
- getInterval() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.SoaplabwsdlType
-
Gets the value of the interval property.
- getInvocationGroupName() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Group
-
Gets the value of the invocationGroupName property.
- getItemList() - Method in class org.apache.taverna.baclava.PartialOrderType
-
Gets the value of the itemList property.
- getIterateOverInputPort() - Method in class org.apache.taverna.scufl2.xml.PortNode
-
Gets the value of the iterateOverInputPort property.
- getIteration() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.IterationStrategyStack
-
Gets the value of the iteration property.
- getIterationCount() - Method in class org.apache.taverna.robundle.xml.odf.manifest.KeyDerivation
-
Gets the value of the iterationCount property.
- getIterationCount() - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.KeyDerivation
-
- getIterationDepth(IterationStrategyNode, Map<InputProcessorPort, Integer>) - Method in class org.apache.taverna.scufl2.validation.structural.StructuralValidator
-
- getIterationStrategies() - Method in class org.apache.taverna.scufl2.xml.IterationStrategyStack
-
Gets the value of the iterationStrategies property.
- getIterationstrategy() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ProcessorType
-
Gets the value of the iterationstrategy property.
- getIterationStrategyStack() - Method in class org.apache.taverna.scufl2.api.core.Processor
-
Returns the IterationStrategyStack or null if
there is no IterationStrategyStack.
- getIterationStrategyStack() - Method in class org.apache.taverna.scufl2.xml.Processor
-
Gets the value of the iterationStrategyStack property.
- getIterationStrategyStack() - Method in class org.apache.taverna.scufl2.xml.Processor.IterationStrategyStack
-
Gets the value of the iterationStrategyStack property.
- getIterationStrategyStack() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Processor
-
Gets the value of the iterationStrategyStack property.
- getIterator() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.CrossType
-
Gets the value of the iterator property.
- getIterator() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.DotType
-
Gets the value of the iterator property.
- getIterator() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.IterationstrategyType
-
Gets the value of the iterator property.
- getJ() - Method in class org.apache.taverna.robundle.xml.dsig.DSAKeyValueType
-
Gets the value of the j property.
- getJarDoubleEscaping() - Method in class org.apache.taverna.robundle.fs.BundleFileSystemProvider
-
- getJarfile() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.DependenciesType
-
Gets the value of the jarfile property.
- getJavaClass() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ActivityInputs.Entry
-
Gets the value of the javaClass property.
- getJaxbContext() - Static method in class org.apache.taverna.robundle.manifest.combine.CombineManifest
-
- getJaxbContext() - Static method in class org.apache.taverna.robundle.manifest.odf.ODFJaxb
-
- getJaxbContext() - Method in class org.apache.taverna.scufl2.rdfxml.RDFXMLSerializer
-
- getJaxbContext() - Method in class org.apache.taverna.scufl2.rdfxml.RevisionParser
-
- getJAxbContextStatic() - Static method in class org.apache.taverna.scufl2.rdfxml.RDFXMLSerializer
-
- getJson() - Method in class org.apache.taverna.scufl2.api.configurations.Configuration
-
Return the underlying JSON JsonNode which contains the properties
set by this configuration.
- getJsonAsObjectNode() - Method in class org.apache.taverna.scufl2.api.configurations.Configuration
-
- getJsonAsString() - Method in class org.apache.taverna.scufl2.api.configurations.Configuration
-
- getJsonSchema() - Method in class org.apache.taverna.scufl2.api.configurations.Configuration
-
- getKeepSessionAlive() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellType
-
Gets the value of the keepSessionAlive property.
- getKey() - Method in class org.apache.taverna.baclava.DataThingType
-
Gets the value of the key property.
- getKey() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MapType
-
Gets the value of the key property.
- getKeyDerivation() - Method in class org.apache.taverna.robundle.xml.odf.manifest.EncryptionData
-
Gets the value of the keyDerivation property.
- getKeyDerivation() - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.EncryptionData
-
- getKeyDerivationName() - Method in class org.apache.taverna.robundle.xml.odf.manifest.KeyDerivation
-
Gets the value of the keyDerivationName property.
- getKeyInfo() - Method in class org.apache.taverna.robundle.xml.dsig.SignatureType
-
Gets the value of the keyInfo property.
- getKeyInfo() - Method in class org.apache.taverna.robundle.xml.xenc.EncryptedType
-
Gets the value of the keyInfo property.
- getKeySize() - Method in class org.apache.taverna.robundle.xml.odf.manifest.KeyDerivation
-
Gets the value of the keySize property.
- getKeySize() - Method in class org.apache.taverna.robundle.xml.odf.manifest.StartKeyGeneration
-
Gets the value of the keySize property.
- getLastPredictedDepth() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.LastPredictedDepthPort
-
Gets the value of the lastPredictedDepth property.
- getLink() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ScuflType
-
Gets the value of the link property.
- getList(Path) - Static method in class org.apache.taverna.databundle.DataBundles
-
- getList() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.HTTPHeaders
-
Gets the value of the list property.
- getListItem(Path, long) - Static method in class org.apache.taverna.databundle.DataBundles
-
- getListSize(Path) - Static method in class org.apache.taverna.databundle.DataBundles
-
- getLocalDependencies() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Gets the value of the localDependencies property.
- getLocalDependencies() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
-
Gets the value of the localDependencies property.
- getLocalworkerName() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
-
Gets the value of the localworkerName property.
- getLocation() - Method in class org.apache.taverna.robundle.xml.combine.Content
-
Gets the value of the location property.
- getLocation() - Method in class org.apache.taverna.scufl2.rdfxml.ParserState
-
- getLocation() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMartConfig.MartService
-
Gets the value of the location property.
- getLog() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ProcessorType
-
Gets the value of the log property.
- getLog() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ScuflType
-
Gets the value of the log property.
- getLsid() - Method in class org.apache.taverna.baclava.DataElementType
-
Gets the value of the lsid property.
- getLsid() - Method in class org.apache.taverna.baclava.MyGridDataDocumentType
-
Gets the value of the lsid property.
- getLsid() - Method in class org.apache.taverna.baclava.PartialOrderType
-
Gets the value of the lsid property.
- getLsid() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.WorkflowDescriptionType
-
Gets the value of the lsid property.
- getMainIncomingDataLink(ReceiverPort) - Method in class org.apache.taverna.scufl2.validation.structural.ValidatorState
-
- getMainProfile() - Method in class org.apache.taverna.scufl2.api.container.WorkflowBundle
-
- getMainProfile() - Method in class org.apache.taverna.scufl2.xml.WorkflowBundle
-
Gets the value of the mainProfile property.
- getMainWorkflow() - Method in class org.apache.taverna.scufl2.api.container.WorkflowBundle
-
- getMainWorkflow() - Method in class org.apache.taverna.scufl2.xml.WorkflowBundle
-
Gets the value of the mainWorkflow property.
- getManifest() - Method in class org.apache.taverna.robundle.Bundle
-
- getManifest() - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- getManifestAsString() - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
-
Get Manifest as String NOTE: This functionality should better be moved to
a DOM based Manifest class
- getManifestEntries() - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
-
- getManifestPath(Bundle) - Static method in class org.apache.taverna.robundle.Bundles
-
- getMap() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Map
-
Gets the value of the map property.
- getMarshaller() - Method in class org.apache.taverna.scufl2.rdfxml.RDFXMLSerializer
-
- getMartDataset() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMartConfig
-
Gets the value of the martDataset property.
- getMartService() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMartConfig
-
Gets the value of the martService property.
- getMaster() - Method in class org.apache.taverna.robundle.xml.combine.Content
-
Gets the value of the master property.
- getMaxDelay() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RetryConfig
-
Gets the value of the maxDelay property.
- getMaxinterval() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.SoaplabwsdlType
-
Gets the value of the maxinterval property.
- getMaxJobs() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ParallelizeConfig
-
Gets the value of the maxJobs property.
- getMaxretries() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
-
Gets the value of the maxretries property.
- getMaxretries() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.LocalType
-
Gets the value of the maxretries property.
- getMaxRetries() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RetryConfig
-
Gets the value of the maxRetries property.
- getMechanismName() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
-
Gets the value of the mechanismName property.
- getMechanismName() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Group
-
Gets the value of the mechanismName property.
- getMechanismType() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
-
Gets the value of the mechanismType property.
- getMechanismType() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Group
-
Gets the value of the mechanismType property.
- getMechanismXML() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
-
Gets the value of the mechanismXML property.
- getMechanismXML() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Group
-
Gets the value of the mechanismXML property.
- getMediatype() - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
- getMediaType() - Method in class org.apache.taverna.robundle.xml.odf.container.RootFile
-
Gets the value of the mediaType property.
- getMediaType() - Method in class org.apache.taverna.robundle.xml.odf.manifest.FileEntry
-
Gets the value of the mediaType property.
- getMediaType() - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.OdfFileEntry
-
- getMediaType(String) - Static method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.OdfFileEntry
-
Get the media type from the given file reference
- getMediaType() - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
-
Get the media type of the ODF package (equal to media type of ODF root
document)
- getMediaType() - Method in class org.apache.taverna.scufl2.ucfpackage.UCFPackage.ResourceEntry
-
- getMediaType(Tools.ConvertionTools) - Method in enum org.apache.taverna.tavlang.tools.Tools.ConvertionTools
-
- getMediaTypes() - Method in class org.apache.taverna.examples.JsonExport.JsonWriter
-
- getMediaTypes() - Method in class org.apache.taverna.scufl2.api.io.structure.StructureReader
-
- getMediaTypes() - Method in class org.apache.taverna.scufl2.api.io.structure.StructureWriter
-
- getMediaTypes() - Method in interface org.apache.taverna.scufl2.api.io.WorkflowBundleReader
-
Return the media types that this reader can read.
- getMediaTypes() - Method in interface org.apache.taverna.scufl2.api.io.WorkflowBundleWriter
-
Returns the media types that this writer can handle.
- getMediaTypes() - Method in class org.apache.taverna.scufl2.rdfxml.RDFXMLReader
-
- getMediaTypes() - Method in class org.apache.taverna.scufl2.rdfxml.RDFXMLWriter
-
- getMediaTypes() - Method in class org.apache.taverna.scufl2.translator.scufl.ScuflReader
-
- getMediaTypes() - Method in class org.apache.taverna.scufl2.translator.t2flow.T2FlowReader
-
- getMediaTypes() - Method in class org.apache.taverna.scufl2.wfdesc.WfdescReader
-
- getMediaTypes() - Method in class org.apache.taverna.scufl2.wfdesc.WfdescWriter
-
- getMediaTypes() - Method in class org.apache.taverna.tavlang.tools.convert.ToJson.JsonWriter
-
- getMergemode() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ProcessorType
-
Gets the value of the mergemode property.
- getMergePosition() - Method in class org.apache.taverna.scufl2.api.core.DataLink
-
Returns the position that this DataLink should join a merge.
- getMergePosition() - Method in class org.apache.taverna.scufl2.xml.DataLink
-
Gets the value of the mergePosition property.
- getMessage() - Method in class org.apache.taverna.databundle.ErrorDocument
-
- getMetadata() - Method in class org.apache.taverna.baclava.MyGridDataDocumentType
-
Gets the value of the metadata property.
- getMetadata() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.SinkType
-
Gets the value of the metadata property.
- getMetadata() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.SourceType
-
Gets the value of the metadata property.
- getMethod() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
-
Gets the value of the method property.
- getMethodName() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Gets the value of the methodName property.
- getMime() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
-
Gets the value of the mime property.
- getMime() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptOutput
-
Gets the value of the mime property.
- getMimeType() - Method in class org.apache.taverna.baclava.MimeTypesType
-
Gets the value of the mimeType property.
- getMimeType(Bundle) - Static method in class org.apache.taverna.robundle.Bundles
-
- getMimeType() - Method in class org.apache.taverna.robundle.xml.dsig.ObjectType
-
Gets the value of the mimeType property.
- getMimeType() - Method in class org.apache.taverna.robundle.xml.xenc.EncryptedType
-
Gets the value of the mimeType property.
- getMimeType() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MimeTypes
-
Gets the value of the mimeType property.
- getMimeTypes() - Method in class org.apache.taverna.baclava.MetadataType
-
Gets the value of the mimeTypes property.
- getMimeTypes() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MetadataType
-
Gets the value of the mimeTypes property.
- getMismatchConfigurableTypeProblems() - Method in class org.apache.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
-
- getMissingIterationStrategyStacks() - Method in class org.apache.taverna.scufl2.validation.structural.ReportStructuralValidationListener
-
- getMissingMainIncomingDataLinks() - Method in class org.apache.taverna.scufl2.validation.structural.ReportStructuralValidationListener
-
- getMobyEndpoint() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobyobjectType
-
Gets the value of the mobyEndpoint property.
- getMobyEndpoint() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobywsdlType
-
Gets the value of the mobyEndpoint property.
- getMobyEndpoint() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyObjectConfig
-
Gets the value of the mobyEndpoint property.
- getMode() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MergemodeType
-
Gets the value of the mode property.
- getMode() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.SinkType
-
Gets the value of the mode property.
- getModification() - Method in class org.apache.taverna.scufl2.xml.roevo.ChangeSpecification.HasChange
-
Gets the value of the modification property.
- getModificationsOf() - Method in class org.apache.taverna.scufl2.api.annotation.Revision
-
- getModulus() - Method in class org.apache.taverna.robundle.xml.dsig.RSAKeyValueType
-
Gets the value of the modulus property.
- getMyGridDataDocument() - Method in class org.apache.taverna.baclava.DataThingType
-
Gets the value of the myGridDataDocument property.
- getName(int) - Method in class org.apache.taverna.robundle.fs.BundlePath
-
- getName() - Method in class org.apache.taverna.robundle.manifest.Agent
-
- getName() - Method in class org.apache.taverna.scufl2.api.common.AbstractNamed
-
- getName() - Method in interface org.apache.taverna.scufl2.api.common.Named
-
- getName() - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.Algorithm
-
- getName() - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.KeyDerivation
-
- getName() - Method in class org.apache.taverna.scufl2.xml.Activity
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.Configuration
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.InputActivityPort
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.InputProcessorPort
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.InputWorkflowPort
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.OutputActivityPort
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.OutputProcessorPort
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.OutputWorkflowPort
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.Processor
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.ProcessorBinding
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.Profile
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ApiConsumerParameterType
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BasetypeType
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobyParameterType
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ClassType
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.CoordinationType
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.DefaultType
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.IteratorType
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MethodType
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ProcessorType
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.SinkType
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.SourceType
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.TemplatePortReferenceType
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Dataflow
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Port
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.PortProduct
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Processor
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Property
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.Workflow
-
Gets the value of the name property.
- getName() - Method in class org.apache.taverna.scufl2.xml.WorkflowBundle
-
Gets the value of the name property.
- getNameCount() - Method in class org.apache.taverna.robundle.fs.BundlePath
-
- getNames() - Method in class org.apache.taverna.scufl2.api.common.NamedSet
-
Returns a set of the names of the elements in this set.
- getNegativeValueProblems() - Method in class org.apache.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
-
- getNestedWorkflow(Profile) - Method in class org.apache.taverna.scufl2.api.core.Processor
-
Get the workflow nested within this processor.
- getNetSfTavernaRavenRepositoryBasicArtifact() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ArtifactDependencies
-
Gets the value of the netSfTavernaRavenRepositoryBasicArtifact property.
- getNetSfTavernaT2ActivitiesRshellRShellPortSymanticTypeBean() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType
-
Gets the value of the netSfTavernaT2ActivitiesRshellRShellPortSymanticTypeBean property.
- getNetSfTavernaT2AnnotationAnnotationAssertionImpl() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl
-
Gets the value of the netSfTavernaT2AnnotationAnnotationAssertionImpl property.
- getNetSfTavernaT2AnnotationAnnotationChainImpl() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotationChain
-
Gets the value of the netSfTavernaT2AnnotationAnnotationChainImpl property.
- getNetSfTavernaT2WorkflowmodelProcessorActivityConfigActivityInputPortDefinitionBean() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ActivityInputPorts
-
Gets the value of the netSfTavernaT2WorkflowmodelProcessorActivityConfigActivityInputPortDefinitionBean property.
- getNetSfTavernaT2WorkflowmodelProcessorActivityConfigActivityOutputPortDefinitionBean() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ActivityOutputPorts
-
Gets the value of the netSfTavernaT2WorkflowmodelProcessorActivityConfigActivityOutputPortDefinitionBean property.
- getNewRVersion() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
-
Gets the value of the newRVersion property.
- getNonAbsoluteURIProblems() - Method in class org.apache.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
-
- getNullFieldProblems() - Method in class org.apache.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
-
- getObject() - Method in class org.apache.taverna.robundle.xml.dsig.SignatureType
-
Gets the value of the object property.
- getOntModel() - Method in class org.apache.taverna.robundle.manifest.RDFToManifest
-
- getOperation() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
-
Gets the value of the operation property.
- getOperation() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.WSDLConfig
-
Gets the value of the operation property.
- getOptional() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
-
Gets the value of the optional property.
- getOptional() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BasetypeType
-
Gets the value of the optional property.
- getOptional() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
-
Gets the value of the optional property.
- getOrcid() - Method in class org.apache.taverna.robundle.manifest.Agent
-
- getOrCreateBundledAs() - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
- getOrigFS() - Method in class org.apache.taverna.robundle.fs.BundleFileSystem
-
Thread-safe ClosedFileSystemException test
- getOtherAttributes() - Method in class org.apache.taverna.robundle.xml.odf.container.Container.Encryption
-
Gets a map that contains attributes that aren't bound to any typed property on this class.
- getOtherAttributes() - Method in class org.apache.taverna.robundle.xml.odf.container.Container
-
Gets a map that contains attributes that aren't bound to any typed property on this class.
- getOtherAttributes() - Method in class org.apache.taverna.robundle.xml.odf.container.Container.Relationships
-
Gets a map that contains attributes that aren't bound to any typed property on this class.
- getOtherAttributes() - Method in class org.apache.taverna.robundle.xml.odf.container.Container.RootFiles
-
Gets a map that contains attributes that aren't bound to any typed property on this class.
- getOtherAttributes() - Method in class org.apache.taverna.robundle.xml.odf.container.Container.Signatures
-
Gets a map that contains attributes that aren't bound to any typed property on this class.
- getOtherAttributes() - Method in class org.apache.taverna.robundle.xml.odf.container.Relationship
-
Gets a map that contains attributes that aren't bound to any typed property on this class.
- getOtherAttributes() - Method in class org.apache.taverna.robundle.xml.odf.container.RootFile
-
Gets a map that contains attributes that aren't bound to any typed property on this class.
- getOtherAttributes() - Method in class org.apache.taverna.robundle.xml.xenc.EncryptionPropertyType
-
Gets a map that contains attributes that aren't bound to any typed property on this class.
- getOtherHTTPHeaders() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
Gets the value of the otherHTTPHeaders property.
- getOutFile() - Static method in class org.apache.taverna.tavlang.CommandLineTool.Optional
-
- getOutgoingDataFormat() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
Gets the value of the outgoingDataFormat property.
- getOutgoingDataLinks(SenderPort) - Method in class org.apache.taverna.scufl2.validation.structural.ValidatorState
-
- getOutOfScopeValueProblems() - Method in class org.apache.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
-
- getOutput() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.LinkType
-
Gets the value of the output property.
- getOutputActivityPort() - Method in class org.apache.taverna.scufl2.xml.Activity
-
Gets the value of the outputActivityPort property.
- getOutputActivityPort() - Method in class org.apache.taverna.scufl2.xml.Activity.OutputActivityPort
-
Gets the value of the outputActivityPort property.
- getOutputFormat() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
-
Gets the value of the outputFormat property.
- getOutputmap() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.AlternateType
-
Gets the value of the outputmap property.
- getOutputMap() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Activity
-
Gets the value of the outputMap property.
- getOutputPort() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.OutputPortListType
-
Gets the value of the outputPort property.
- getOutputPortBinding() - Method in class org.apache.taverna.scufl2.xml.ProcessorBinding
-
Gets the value of the outputPortBinding property.
- getOutputPortBinding() - Method in class org.apache.taverna.scufl2.xml.ProcessorBinding.OutputPortBinding
-
Gets the value of the outputPortBinding property.
- getOutputPortBindings() - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorBinding
-
Returns the bindings for individual output ports of the bound
Processor.
- getOutputPorts() - Method in class org.apache.taverna.scufl2.api.activity.Activity
-
Returns the OutputActivityPorts.
- getOutputPorts() - Method in interface org.apache.taverna.scufl2.api.common.Ported
-
- getOutputPorts() - Method in class org.apache.taverna.scufl2.api.core.Processor
-
Returns the NamedSet of output ports.
- getOutputPorts() - Method in class org.apache.taverna.scufl2.api.core.Workflow
-
Returns the OutputWorkflowPorts.
- getOutputPorts() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Dataflow
-
Gets the value of the outputPorts property.
- getOutputPorts() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Processor
-
Gets the value of the outputPorts property.
- getOutputProcessorPort() - Method in class org.apache.taverna.scufl2.xml.Processor
-
Gets the value of the outputProcessorPort property.
- getOutputProcessorPort() - Method in class org.apache.taverna.scufl2.xml.Processor.OutputProcessorPort
-
Gets the value of the outputProcessorPort property.
- getOutputs(Bundle) - Static method in class org.apache.taverna.databundle.DataBundles
-
- getOutputs() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Gets the value of the outputs property.
- getOutputs() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
-
Gets the value of the outputs property.
- getOutputs() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.InteractionConfig
-
Gets the value of the outputs property.
- getOutputs() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
-
Gets the value of the outputs property.
- getOutputs() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Gets the value of the outputs property.
- getOutputs() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.XMLSplitterConfig
-
Gets the value of the outputs property.
- getOutputSymanticTypes() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
-
Gets the value of the outputSymanticTypes property.
- getOutputWorkflowPort() - Method in class org.apache.taverna.scufl2.xml.Workflow
-
Gets the value of the outputWorkflowPort property.
- getOutputWorkflowPort() - Method in class org.apache.taverna.scufl2.xml.Workflow.OutputWorkflowPort
-
Gets the value of the outputWorkflowPort property.
- getP() - Method in class org.apache.taverna.robundle.xml.dsig.DSAKeyValueType
-
Gets the value of the p property.
- getPackageMediaType() - Method in class org.apache.taverna.scufl2.ucfpackage.UCFPackage
-
- getParameter() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
-
Gets the value of the parameter property.
- getParameter() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobywsdlType
-
Gets the value of the parameter property.
- getParameterDimensions() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Gets the value of the parameterDimensions property.
- getParameterNames() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Gets the value of the parameterNames property.
- getParameterTypes() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Gets the value of the parameterTypes property.
- getParent() - Method in class org.apache.taverna.baclava.RelationType
-
Gets the value of the parent property.
- getParent() - Method in class org.apache.taverna.robundle.fs.BundlePath
-
- getParent() - Method in class org.apache.taverna.scufl2.api.activity.Activity
-
- getParent() - Method in class org.apache.taverna.scufl2.api.annotation.Annotation
-
- getParent() - Method in interface org.apache.taverna.scufl2.api.common.Child
-
- getParent() - Method in class org.apache.taverna.scufl2.api.configurations.Configuration
-
- getParent() - Method in class org.apache.taverna.scufl2.api.core.BlockingControlLink
-
- getParent() - Method in class org.apache.taverna.scufl2.api.core.DataLink
-
Returns the parent Workflow of null if this
DataLink is an orphan.
- getParent() - Method in class org.apache.taverna.scufl2.api.core.Processor
-
Returns the parent Workflow of null if this
Processor is an orphan.
- getParent() - Method in class org.apache.taverna.scufl2.api.core.Workflow
-
- getParent() - Method in class org.apache.taverna.scufl2.api.iterationstrategy.CrossProduct
-
- getParent() - Method in class org.apache.taverna.scufl2.api.iterationstrategy.DotProduct
-
- getParent() - Method in class org.apache.taverna.scufl2.api.iterationstrategy.IterationStrategyStack
-
- getParent() - Method in class org.apache.taverna.scufl2.api.iterationstrategy.PortNode
-
- getParent() - Method in class org.apache.taverna.scufl2.api.port.InputActivityPort
-
- getParent() - Method in class org.apache.taverna.scufl2.api.port.InputProcessorPort
-
- getParent() - Method in class org.apache.taverna.scufl2.api.port.InputWorkflowPort
-
- getParent() - Method in class org.apache.taverna.scufl2.api.port.OutputActivityPort
-
- getParent() - Method in class org.apache.taverna.scufl2.api.port.OutputProcessorPort
-
- getParent() - Method in class org.apache.taverna.scufl2.api.port.OutputWorkflowPort
-
- getParent() - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorBinding
-
- getParent() - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorInputPortBinding
-
- getParent() - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorOutputPortBinding
-
- getParent() - Method in class org.apache.taverna.scufl2.api.profiles.Profile
-
- getParser() - Method in class org.apache.taverna.scufl2.translator.scufl.ScuflReader
-
- getParser() - Method in class org.apache.taverna.scufl2.translator.t2flow.T2FlowReader
-
- getParserState() - Method in class org.apache.taverna.scufl2.rdfxml.AbstractParser
-
- getParserState() - Method in class org.apache.taverna.scufl2.translator.scufl.processorelement.AbstractExtensionParser
-
- getParserState() - Method in interface org.apache.taverna.scufl2.translator.scufl.ScuflExtensionParser
-
- getParseType() - Method in class org.apache.taverna.scufl2.xml.DispatchStack.DispatchStackLayers
-
Gets the value of the parseType property.
- getParseType() - Method in class org.apache.taverna.scufl2.xml.IterationStrategyStack.IterationStrategies
-
Gets the value of the parseType property.
- getParseType() - Method in class org.apache.taverna.scufl2.xml.ProductOf
-
Gets the value of the parseType property.
- getPartialOrder() - Method in class org.apache.taverna.baclava.MyGridDataDocumentType
-
Gets the value of the partialOrder property.
- getPassword() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellType
-
Gets the value of the password property.
- getPassword() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
-
Gets the value of the password property.
- getPath(String) - Method in class org.apache.taverna.robundle.Bundle
-
- getPath(String, String...) - Method in class org.apache.taverna.robundle.fs.BundleFileSystem
-
- getPath(URI) - Method in class org.apache.taverna.robundle.fs.BundleFileSystemProvider
-
- getPath() - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.OdfFileEntry
-
- getPath() - Method in enum org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage.OdfFile
-
- getPath() - Method in class org.apache.taverna.scufl2.ucfpackage.UCFPackage.ResourceEntry
-
- getPath() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptOutput
-
Gets the value of the path property.
- getPathMatcher(String) - Method in class org.apache.taverna.robundle.fs.BundleFileSystem
-
- getPgenCounter() - Method in class org.apache.taverna.robundle.xml.dsig.DSAKeyValueType
-
Gets the value of the pgenCounter property.
- getPollingBackoff() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SoaplabConfig
-
Gets the value of the pollingBackoff property.
- getPollingInterval() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SoaplabConfig
-
Gets the value of the pollingInterval property.
- getPollingIntervalMax() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SoaplabConfig
-
Gets the value of the pollingIntervalMax property.
- getPort(Path, String) - Static method in class org.apache.taverna.databundle.DataBundles
-
- getPort() - Method in class org.apache.taverna.scufl2.validation.correctness.report.PortMissingFromIterationStrategyStackProblem
-
- getPort() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.InfernoType
-
Gets the value of the port property.
- getPort() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellType
-
Gets the value of the port property.
- getPort() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotatedGranularDepthPorts
-
Gets the value of the port property.
- getPort() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotatedPorts
-
Gets the value of the port property.
- getPort() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.DepthPorts
-
Gets the value of the port property.
- getPort() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.GranularDepthPorts
-
Gets the value of the port property.
- getPort() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Link
-
Gets the value of the port property.
- getPort() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Ports
-
Gets the value of the port property.
- getPort() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
-
Gets the value of the port property.
- getPortDepth() - Method in class org.apache.taverna.scufl2.xml.InputActivityPort
-
Gets the value of the portDepth property.
- getPortDepth() - Method in class org.apache.taverna.scufl2.xml.InputProcessorPort
-
Gets the value of the portDepth property.
- getPortDepth() - Method in class org.apache.taverna.scufl2.xml.InputWorkflowPort
-
Gets the value of the portDepth property.
- getPortDepth() - Method in class org.apache.taverna.scufl2.xml.OutputActivityPort
-
Gets the value of the portDepth property.
- getPortDepth() - Method in class org.apache.taverna.scufl2.xml.OutputProcessorPort
-
Gets the value of the portDepth property.
- getPortMentionedTwiceProblems() - Method in class org.apache.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
-
- getPortMissingFromIterationStrategyStackProblems() - Method in class org.apache.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
-
- getPortResolvedDepth(Port) - Method in class org.apache.taverna.scufl2.validation.structural.ValidatorState
-
- getPorts(Path) - Static method in class org.apache.taverna.databundle.DataBundles
-
- getPossibleDownStreamProcessors() - Method in class org.apache.taverna.scufl2.api.core.Processor
-
Get the collection of processors that can be downstream of this
processor.
- getPossibleUpStreamProcessors() - Method in class org.apache.taverna.scufl2.api.core.Processor
-
Get the collection of processors that can be upstream of this
processor.
- getPreDeclaredNamespaceUris() - Method in class org.apache.taverna.robundle.manifest.combine.CombineManifest.ManifestNamespacePrefixMapperJAXB_RI
-
- getPreDeclaredNamespaceUris() - Method in class org.apache.taverna.robundle.manifest.odf.ODFJaxb.ManifestNamespacePrefixMapperJAXB_RI
-
- getPreDeclaredNamespaceUris() - Method in class org.apache.taverna.scufl2.rdfxml.impl.NamespacePrefixMapperJAXB_RI
-
- getPreferredPrefix(String, String, boolean) - Method in class org.apache.taverna.robundle.manifest.combine.CombineManifest.ManifestNamespacePrefixMapperJAXB_RI
-
- getPreferredPrefix(String, String, boolean) - Method in class org.apache.taverna.robundle.manifest.odf.ODFJaxb.ManifestNamespacePrefixMapperJAXB_RI
-
- getPreferredPrefix(String, String, boolean) - Method in class org.apache.taverna.scufl2.rdfxml.impl.NamespacePrefixMapperJAXB_RI
-
- getPreferredViewMode() - Method in class org.apache.taverna.robundle.xml.odf.manifest.FileEntry
-
Gets the value of the preferredViewMode property.
- getPreparingTimeoutInSeconds() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Gets the value of the preparingTimeoutInSeconds property.
- getPresentationOrigin() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.InteractionConfig
-
Gets the value of the presentationOrigin property.
- getPreviousDispatchLayerName() - Method in class org.apache.taverna.scufl2.translator.t2flow.ParserState
-
- getPreviousRevision() - Method in class org.apache.taverna.scufl2.api.annotation.Revision
-
- getProcessor() - Method in class org.apache.taverna.scufl2.validation.structural.ValidatorState
-
- getProcessor() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ScuflType
-
Gets the value of the processor property.
- getProcessor() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Link
-
Gets the value of the processor property.
- getProcessor() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Processors
-
Gets the value of the processor property.
- getProcessor() - Method in class org.apache.taverna.scufl2.xml.Workflow
-
Gets the value of the processor property.
- getProcessor() - Method in class org.apache.taverna.scufl2.xml.Workflow.Processor
-
Gets the value of the processor property.
- getProcessorBinding() - Method in class org.apache.taverna.scufl2.xml.Profile
-
Gets the value of the processorBinding property.
- getProcessorBindings() - Method in class org.apache.taverna.scufl2.api.profiles.Profile
-
Return the set of bindings for individual Processors.
- getProcessorElement() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ProcessorType
-
Gets the value of the processorElement property.
- getProcessors() - Method in class org.apache.taverna.scufl2.api.core.Workflow
-
Returns the Processors.
- getProcessors() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Dataflow
-
Gets the value of the processors property.
- getProducedBy() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Workflow
-
Gets the value of the producedBy property.
- getProductOf() - Method in class org.apache.taverna.scufl2.xml.CrossProduct
-
Gets the value of the productOf property.
- getProductOf() - Method in class org.apache.taverna.scufl2.xml.DotProduct
-
Gets the value of the productOf property.
- getProfile() - Method in class org.apache.taverna.scufl2.validation.structural.ValidatorState
-
- getProfile() - Method in class org.apache.taverna.scufl2.xml.WorkflowBundle
-
Gets the value of the profile property.
- getProfile() - Method in class org.apache.taverna.scufl2.xml.WorkflowBundle.Profile
-
Gets the value of the profile property.
- getProfilePosition() - Method in class org.apache.taverna.scufl2.api.profiles.Profile
-
Return the suggested position of this profile within the
WorkflowBundle.
- getProfiles() - Method in class org.apache.taverna.scufl2.api.container.WorkflowBundle
-
- getProgressNotification() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.InteractionConfig
-
Gets the value of the progressNotification property.
- getProperties() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.LoopConfig
-
Gets the value of the properties property.
- getProperty() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Properties
-
Gets the value of the property property.
- getProxy() - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
Deprecated.
- getQ() - Method in class org.apache.taverna.robundle.xml.dsig.DSAKeyValueType
-
Gets the value of the q property.
- getQname() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
-
Gets the value of the qname property.
- getQname() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BasetypeType
-
Gets the value of the qname property.
- getQname() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
-
Gets the value of the qname property.
- getQuery() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMartConfig
-
Gets the value of the query property.
- getQueueDeny() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Gets the value of the queueDeny property.
- getQueuePreferred() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Gets the value of the queuePreferred property.
- getRaven() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Activity
-
Gets the value of the raven property.
- getRaven() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.DispatchLayer
-
Gets the value of the raven property.
- getRDFContent() - Method in class org.apache.taverna.scufl2.api.annotation.Annotation
-
Gets the content of this annotation.
- getReaderForMediaType(String) - Method in class org.apache.taverna.scufl2.api.io.WorkflowBundleIO
-
Returns a WorkflowBundleReader for the specified media type.
- getReaders() - Method in class org.apache.taverna.scufl2.api.io.WorkflowBundleIO
-
Returns all the available WorkflowBundleReaders.
- getReceiveFrom() - Method in class org.apache.taverna.scufl2.xml.DataLink
-
Gets the value of the receiveFrom property.
- getReceivesFrom() - Method in class org.apache.taverna.scufl2.api.core.DataLink
-
Returns the SenderPort that this DataLink
receives data from.
- getRecipient() - Method in class org.apache.taverna.robundle.xml.xenc.EncryptedKeyType
-
Gets the value of the recipient property.
- getRef() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.DataflowConfig
-
Gets the value of the ref property.
- getReference(Path) - Static method in class org.apache.taverna.robundle.Bundles
-
- getReference() - Method in class org.apache.taverna.robundle.xml.dsig.ManifestType
-
Gets the value of the reference property.
- getReference() - Method in class org.apache.taverna.robundle.xml.dsig.SignedInfoType
-
Gets the value of the reference property.
- getReference() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean.SymanticType
-
Gets the value of the reference property.
- getReferenceList() - Method in class org.apache.taverna.robundle.xml.xenc.EncryptedKeyType
-
Gets the value of the referenceList property.
- getRegistryBase() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ComponentConfig
-
Gets the value of the registryBase property.
- getRegistryEndpoint() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyParserConfig
-
Gets the value of the registryEndpoint property.
- getRelatedResource() - Method in class org.apache.taverna.scufl2.xml.roevo.Change
-
Gets the value of the relatedResource property.
- getRelation() - Method in class org.apache.taverna.baclava.RelationListType
-
Gets the value of the relation property.
- getRelationList() - Method in class org.apache.taverna.baclava.PartialOrderType
-
Gets the value of the relationList property.
- getRelationships() - Method in class org.apache.taverna.robundle.xml.odf.container.Container
-
Gets the value of the relationships property.
- getRelativeURI(WorkflowBean) - Method in class org.apache.taverna.scufl2.api.annotation.Revision
-
Get the URI of this revision relative to another workflow element.
- getRelativeURI(WorkflowBean) - Method in class org.apache.taverna.scufl2.api.common.AbstractNamed
-
Get the URI of this workflow element relative to another workflow
element.
- getRelativeURI(WorkflowBean) - Method in class org.apache.taverna.scufl2.api.core.BlockingControlLink
-
Get the URI of this control link relative to another workflow element.
- getRelativeURI(WorkflowBean) - Method in class org.apache.taverna.scufl2.api.core.DataLink
-
Get the URI of this datalink relative to another workflow element.
- getRelativeURI(WorkflowBean) - Method in class org.apache.taverna.scufl2.api.iterationstrategy.PortNode
-
Get the URI of this port node relative to another workflow element.
- getRelativeURI(WorkflowBean) - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorPortBinding
-
Get the URI of this port binding relative to another workflow element.
- getRemoval() - Method in class org.apache.taverna.scufl2.xml.roevo.ChangeSpecification.HasChange
-
Gets the value of the removal property.
- getRemovalOf() - Method in class org.apache.taverna.scufl2.api.annotation.Revision
-
- getRepositories() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
-
Gets the value of the repositories property.
- getRepositories() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BeanshellType
-
Gets the value of the repositories property.
- getRepository() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RepositoriesType
-
Gets the value of the repository property.
- getRepositoryUrl() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
-
Gets the value of the repositoryUrl property.
- getRepositoryUrl() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseConfig
-
Gets the value of the repositoryUrl property.
- getREs() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Gets the value of the rEs property.
- getResource() - Method in class org.apache.taverna.scufl2.xml.ConfigurationType
-
Gets the value of the resource property.
- getResource() - Method in class org.apache.taverna.scufl2.xml.rdf.Resource
-
Gets the value of the resource property.
- getResource() - Method in class org.apache.taverna.scufl2.xml.rdf.Type
-
Gets the value of the resource property.
- getResource() - Method in class org.apache.taverna.scufl2.xml.rdfs.Domain
-
Gets the value of the resource property.
- getResource() - Method in class org.apache.taverna.scufl2.xml.rdfs.Range
-
Gets the value of the resource property.
- getResource() - Method in class org.apache.taverna.scufl2.xml.rdfs.SeeAlso
-
Gets the value of the resource property.
- getResource() - Method in class org.apache.taverna.scufl2.xml.rdfs.SubClassOf
-
Gets the value of the resource property.
- getResource() - Method in class org.apache.taverna.scufl2.xml.rdfs.SubPropertyOf
-
Gets the value of the resource property.
- getResourceAsBytes(String) - Method in class org.apache.taverna.scufl2.ucfpackage.UCFPackage
-
- getResourceAsInputStream(String) - Method in class org.apache.taverna.scufl2.ucfpackage.UCFPackage
-
- getResourceAsString(String) - Method in class org.apache.taverna.scufl2.ucfpackage.UCFPackage
-
- getResourceEntry(String) - Method in class org.apache.taverna.scufl2.ucfpackage.UCFPackage
-
- getResourcePath() - Method in class org.apache.taverna.scufl2.api.annotation.Annotation
-
Gets the standard path for the resource in the bundle associated with
this annotation.
- getResources() - Method in class org.apache.taverna.scufl2.api.container.WorkflowBundle
-
- getRetrybackoff() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
-
Gets the value of the retrybackoff property.
- getRetrybackoff() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.LocalType
-
Gets the value of the retrybackoff property.
- getRetrydelay() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
-
Gets the value of the retrydelay property.
- getRetrydelay() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.LocalType
-
Gets the value of the retrydelay property.
- getReturnDimension() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Gets the value of the returnDimension property.
- getReturnType() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Gets the value of the returnType property.
- getRole() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Dataflow
-
Gets the value of the role property.
- getRoot() - Method in class org.apache.taverna.robundle.Bundle
-
- getRoot() - Method in class org.apache.taverna.robundle.fs.BundlePath
-
- getRootDirectories() - Method in class org.apache.taverna.robundle.fs.BundleFileSystem
-
- getRootDirectory() - Method in class org.apache.taverna.robundle.fs.BundleFileSystem
-
- getRootFiles(Container) - Method in class org.apache.taverna.scufl2.ucfpackage.UCFPackage
-
- getRootFiles() - Method in class org.apache.taverna.scufl2.ucfpackage.UCFPackage
-
- getRootFilesOrAny() - Method in class org.apache.taverna.robundle.xml.odf.container.Container
-
Gets the value of the rootFilesOrAny property.
- getRootFileVersion(String) - Method in class org.apache.taverna.scufl2.ucfpackage.UCFPackage
-
- getRowRange() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
-
Gets the value of the rowRange property.
- getRshellInputPort() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellInputPortListType
-
Gets the value of the rshellInputPort property.
- getRshellOutputPort() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellOutputPortListType
-
Gets the value of the rshellOutputPort property.
- getRVersion() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
-
Gets the value of the rVersion property.
- getSalt() - Method in class org.apache.taverna.robundle.xml.odf.manifest.KeyDerivation
-
Gets the value of the salt property.
- getSalt() - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.KeyDerivation
-
- getScheme() - Method in class org.apache.taverna.robundle.fs.BundleFileSystemProvider
-
- getScript() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
-
Gets the value of the script property.
- getScript() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
-
Gets the value of the script property.
- getScriptvalue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BeanshellType
-
Gets the value of the scriptvalue property.
- getScufl2Tools() - Method in class org.apache.taverna.scufl2.wfdesc.WfdescSerialiser
-
- getScuflExtensionParsers() - Method in class org.apache.taverna.scufl2.translator.scufl.ScuflParser
-
- getSecondaries() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyConfig
-
Gets the value of the secondaries property.
- getSecurityProfile() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.WSDLConfig
-
Gets the value of the securityProfile property.
- getSeeAlso() - Method in class org.apache.taverna.scufl2.xml.Configuration
-
Gets the value of the seeAlso property.
- getSeeAlso() - Method in class org.apache.taverna.scufl2.xml.SeeAlsoType
-
Gets the value of the seeAlso property.
- getSeeAlso() - Method in class org.apache.taverna.scufl2.xml.Workflow
-
Gets the value of the seeAlso property.
- getSeeAlso() - Method in class org.apache.taverna.scufl2.xml.WorkflowBundle
-
Gets the value of the seeAlso property.
- getSeed() - Method in class org.apache.taverna.robundle.xml.dsig.DSAKeyValueType
-
Gets the value of the seed property.
- getSemanticType() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MetadataType
-
Gets the value of the semanticType property.
- getSendsTo() - Method in class org.apache.taverna.scufl2.api.core.DataLink
-
Returns the ReceiverPort that this DataLink
sends data to.
- getSendTo() - Method in class org.apache.taverna.scufl2.xml.DataLink
-
Gets the value of the sendTo property.
- getSeparator() - Method in class org.apache.taverna.robundle.fs.BundleFileSystem
-
- getSerializedAt() - Method in class org.apache.taverna.scufl2.api.annotation.Annotation
-
- getSerializedBy() - Method in class org.apache.taverna.scufl2.api.annotation.Annotation
-
- getService() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.InfernoType
-
Gets the value of the service property.
- getServiceName() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobyobjectType
-
Gets the value of the serviceName property.
- getServiceName() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobywsdlType
-
Gets the value of the serviceName property.
- getServiceName() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyObjectConfig
-
Gets the value of the serviceName property.
- getServiceType() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyConfig
-
Gets the value of the serviceType property.
- getShowActualUrlPort() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
Gets the value of the showActualUrlPort property.
- getShowResponseHeadersPort() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
Gets the value of the showResponseHeadersPort property.
- getSignature() - Method in class org.apache.taverna.robundle.xml.odf.container.Container.Signatures
-
Gets the value of the signature property.
- getSignatureMethod() - Method in class org.apache.taverna.robundle.xml.dsig.SignedInfoType
-
Gets the value of the signatureMethod property.
- getSignatureProperty() - Method in class org.apache.taverna.robundle.xml.dsig.SignaturePropertiesType
-
Gets the value of the signatureProperty property.
- getSignatures() - Method in class org.apache.taverna.robundle.xml.odf.container.Container
-
Gets the value of the signatures property.
- getSignatureValue() - Method in class org.apache.taverna.robundle.xml.dsig.SignatureType
-
Gets the value of the signatureValue property.
- getSignedInfo() - Method in class org.apache.taverna.robundle.xml.dsig.SignatureType
-
Gets the value of the signedInfo property.
- getSink() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.LinkType
-
Gets the value of the sink property.
- getSink() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ScuflType
-
Gets the value of the sink property.
- getSink() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.DataLink
-
Gets the value of the sink property.
- getSize() - Method in class org.apache.taverna.robundle.xml.odf.manifest.FileEntry
-
Gets the value of the size property.
- getSize() - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.OdfFileEntry
-
get the size or -1 if not set
- getSize() - Method in class org.apache.taverna.scufl2.ucfpackage.UCFPackage.ResourceEntry
-
- getSlicelist() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ExtensionsType
-
Gets the value of the slicelist property.
- getSource() - Method in class org.apache.taverna.robundle.Bundle
-
- getSource() - Method in class org.apache.taverna.robundle.fs.BundleFileSystem
-
- getSource() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.LinkType
-
Gets the value of the source property.
- getSource() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ScuflType
-
Gets the value of the source property.
- getSource() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.DataLink
-
Gets the value of the source property.
- getSPKISexpAndAny() - Method in class org.apache.taverna.robundle.xml.dsig.SPKIDataType
-
Gets the value of the spkiSexpAndAny property.
- getSplitPoint() - Method in class org.apache.taverna.scufl2.api.common.Scufl2Tools.ProcessorSplit
-
Processor that was used as a split point.
- getStack() - Method in class org.apache.taverna.scufl2.rdfxml.ParserState
-
- getStart() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetRange
-
Gets the value of the start property.
- getStartKeyGeneration() - Method in class org.apache.taverna.robundle.xml.odf.manifest.EncryptionData
-
Gets the value of the startKeyGeneration property.
- getStartKeyGenerationName() - Method in class org.apache.taverna.robundle.xml.odf.manifest.StartKeyGeneration
-
Gets the value of the startKeyGenerationName property.
- getState() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ConditionType
-
Gets the value of the state property.
- getStatechange() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ActionType
-
Gets the value of the statechange property.
- getStatic() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MethodType
-
Gets the value of the static property.
- getStaticInputs() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Gets the value of the staticInputs property.
- getStrategy() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Iteration
-
Gets the value of the strategy property.
- getString() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ActivityInputs.Entry
-
Gets the value of the string property.
- getString() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ActivityPortDefinitionBean.MimeTypes
-
Gets the value of the string property.
- getString() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerParameterNames
-
Gets the value of the string property.
- getString() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerParameterTypes
-
Gets the value of the string property.
- getString() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
-
Gets the value of the string property.
- getString() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyEntry
-
Gets the value of the string property.
- getString() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Dependencies
-
Gets the value of the string property.
- getString() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Entry
-
Gets the value of the string property.
- getString() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.LocalDependencies
-
Gets the value of the string property.
- getString() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetColumnNameEntry
-
Gets the value of the string property.
- getStringValue(Path) - Static method in class org.apache.taverna.robundle.Bundles
-
- getSupportedReaderMediaTypes() - Method in class org.apache.taverna.scufl2.api.io.WorkflowBundleIO
-
Get the supported media types for reading.
- getSupportedWriterMediaTypes() - Method in class org.apache.taverna.scufl2.api.io.WorkflowBundleIO
-
Get the supported media types for writing.
- getSymanticType() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellInputPortType
-
Gets the value of the symanticType property.
- getSymanticType() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellOutputPortType
-
Gets the value of the symanticType property.
- getSymanticType() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean
-
Gets the value of the symanticType property.
- getSyntactictype() - Method in class org.apache.taverna.baclava.MyGridDataDocumentType
-
Gets the value of the syntactictype property.
- getSyntactictype() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BeanshellinputType
-
Gets the value of the syntactictype property.
- getSyntactictype() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BeanshelloutputType
-
Gets the value of the syntactictype property.
- getSyntacticType() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.InputPortType
-
Gets the value of the syntacticType property.
- getSyntacticType() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.OutputPortType
-
Gets the value of the syntacticType property.
- getSyntacticType() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellInputPortType
-
Gets the value of the syntacticType property.
- getSyntacticType() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellOutputPortType
-
Gets the value of the syntacticType property.
- getT2FlowParser() - Method in class org.apache.taverna.scufl2.translator.t2flow.ParserState
-
- getT2Parser(URI) - Method in class org.apache.taverna.scufl2.translator.t2flow.T2FlowParser
-
- getT2Parsers() - Method in class org.apache.taverna.scufl2.translator.t2flow.T2FlowParser
-
- getTag() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
-
Gets the value of the tag property.
- getTag() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
-
Gets the value of the tag property.
- getTags() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Gets the value of the tags property.
- getTarget() - Method in class org.apache.taverna.robundle.xml.dsig.SignaturePropertyType
-
Gets the value of the target property.
- getTarget() - Method in class org.apache.taverna.robundle.xml.odf.container.Relationship
-
Gets the value of the target property.
- getTarget() - Method in class org.apache.taverna.robundle.xml.xenc.EncryptionPropertyType
-
Gets the value of the target property.
- getTarget() - Method in class org.apache.taverna.scufl2.api.annotation.Annotation
-
- getTarget() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ActionType
-
Gets the value of the target property.
- getTarget() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ConditionType
-
Gets the value of the target property.
- getTarget() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Condition
-
Gets the value of the target property.
- getTemplate() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ProcessorType
-
Gets the value of the template property.
- getTemplateLiteralOrTemplatePortReference() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.TemplateType
-
Gets the value of the templateLiteralOrTemplatePortReference property.
- getTestLocal() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Gets the value of the testLocal property.
- getTitle(Child<?>) - Method in class org.apache.taverna.scufl2.annotation.AnnotationTools
-
- getTitle() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.WorkflowDescriptionType
-
Gets the value of the title property.
- getTo() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.StatechangeType
-
Gets the value of the to property.
- getTo() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Mapping
-
Gets the value of the to property.
- getTools() - Method in class org.apache.taverna.scufl2.api.common.AbstractCloneable
-
- getTotalSpace() - Method in class org.apache.taverna.robundle.fs.BundleFileStore
-
- getTrace() - Method in class org.apache.taverna.databundle.ErrorDocument
-
- getTransform() - Method in class org.apache.taverna.robundle.xml.dsig.TransformsType
-
Gets the value of the transform property.
- getTransform() - Method in class org.apache.taverna.robundle.xml.xenc.TransformsType
-
Gets the value of the transform property.
- getTransformer() - Static method in class org.apache.taverna.scufl2.translator.t2flow.T2FlowParser
-
- getTransforms() - Method in class org.apache.taverna.robundle.xml.dsig.ReferenceType
-
Gets the value of the transforms property.
- getTransforms() - Method in class org.apache.taverna.robundle.xml.dsig.RetrievalMethodType
-
Gets the value of the transforms property.
- getTransforms() - Method in class org.apache.taverna.robundle.xml.xenc.CipherReferenceType
-
Gets the value of the transforms property.
- getType() - Method in class org.apache.taverna.baclava.PartialOrderType
-
Gets the value of the type property.
- getType() - Method in class org.apache.taverna.robundle.xml.dsig.ReferenceType
-
Gets the value of the type property.
- getType() - Method in class org.apache.taverna.robundle.xml.dsig.RetrievalMethodType
-
Gets the value of the type property.
- getType() - Method in class org.apache.taverna.robundle.xml.odf.container.Relationship
-
Gets the value of the type property.
- getType() - Method in class org.apache.taverna.robundle.xml.xenc.EncryptedType
-
Gets the value of the type property.
- getType() - Method in class org.apache.taverna.scufl2.api.activity.Activity
-
Returns the type of the Activity.
- getType() - Method in interface org.apache.taverna.scufl2.api.common.Typed
-
- getType() - Method in class org.apache.taverna.scufl2.api.configurations.Configuration
-
Return the type of the Configuration.
- getType() - Method in class org.apache.taverna.scufl2.api.core.Processor
-
- getType() - Method in class org.apache.taverna.scufl2.xml.Activity
-
Gets the value of the type property.
- getType() - Method in class org.apache.taverna.scufl2.xml.Configuration
-
Gets the value of the type property.
- getType() - Method in class org.apache.taverna.scufl2.xml.DispatchStack
-
Gets the value of the type property.
- getType() - Method in class org.apache.taverna.scufl2.xml.DispatchStackLayer
-
Gets the value of the type property.
- getType() - Method in class org.apache.taverna.scufl2.xml.roevo.ChangeSpecification
-
Gets the value of the type property.
- getType() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ApiConsumerParameterType
-
Gets the value of the type property.
- getType() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MethodType
-
Gets the value of the type property.
- getType() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Link
-
Gets the value of the type property.
- getTypename() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
-
Gets the value of the typename property.
- getTypename() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BasetypeType
-
Gets the value of the typename property.
- getTypename() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
-
Gets the value of the typename property.
- getUcfPackage() - Method in class org.apache.taverna.scufl2.rdfxml.ParserState
-
- getUcfPackage() - Method in class org.apache.taverna.scufl2.ucfpackage.UCFPackage.ResourceEntry
-
- getUnallocatedSpace() - Method in class org.apache.taverna.robundle.fs.BundleFileStore
-
- getUnbounded() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
-
Gets the value of the unbounded property.
- getUnbounded() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BasetypeType
-
Gets the value of the unbounded property.
- getUnbounded() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
-
Gets the value of the unbounded property.
- getUnconnected() - Method in class org.apache.taverna.scufl2.api.common.Scufl2Tools.ProcessorSplit
-
Processors that are unconnected to the split point.
- getUnmarshaller() - Method in class org.apache.taverna.scufl2.translator.scufl.ScuflParser
-
- getUnmarshaller() - Method in class org.apache.taverna.scufl2.translator.t2flow.T2FlowParser
-
- getUnrecognizedIterationStrategyNodes() - Method in class org.apache.taverna.scufl2.validation.structural.ReportStructuralValidationListener
-
- getUnresolvedOutputs() - Method in class org.apache.taverna.scufl2.validation.structural.ReportStructuralValidationListener
-
- getUnresolvedProcessors() - Method in class org.apache.taverna.scufl2.validation.structural.ReportStructuralValidationListener
-
- getUntilFinished() - Method in class org.apache.taverna.scufl2.api.core.BlockingControlLink
-
Returns the Processor that controls the block.
- getUntilFinished() - Method in class org.apache.taverna.scufl2.xml.Blocking
-
Gets the value of the untilFinished property.
- getUpStream() - Method in class org.apache.taverna.scufl2.api.common.Scufl2Tools.ProcessorSplit
-
Processors that are upstream from the split point.
- getUri() - Method in class org.apache.taverna.robundle.manifest.Agent
-
- getUri() - Method in class org.apache.taverna.robundle.manifest.PathAnnotation
-
- getUri() - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
- getURI() - Method in class org.apache.taverna.robundle.manifest.Proxy
-
- getURI() - Method in class org.apache.taverna.robundle.xml.dsig.ReferenceType
-
Gets the value of the uri property.
- getURI() - Method in class org.apache.taverna.robundle.xml.dsig.RetrievalMethodType
-
Gets the value of the uri property.
- getURI() - Method in class org.apache.taverna.robundle.xml.xenc.CipherReferenceType
-
Gets the value of the uri property.
- getURI() - Method in class org.apache.taverna.robundle.xml.xenc.ReferenceType
-
Gets the value of the uri property.
- getURI() - Method in class org.apache.taverna.scufl2.api.annotation.Revision
-
Get the URI of this revision.
- getURI() - Method in class org.apache.taverna.scufl2.api.common.AbstractNamed
-
Get the URI of this workflow element.
- getURI() - Method in class org.apache.taverna.scufl2.api.core.BlockingControlLink
-
Get the URI of this control link.
- getURI() - Method in class org.apache.taverna.scufl2.api.core.DataLink
-
Get the URI of this datalink.
- getURI() - Method in class org.apache.taverna.scufl2.api.iterationstrategy.PortNode
-
Get the URI of this port node.
- getURI() - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorPortBinding
-
Get the URI of this port binding.
- getURI() - Static method in class org.apache.taverna.scufl2.wfdesc.ontologies.Foaf
-
The namespace of the vocabulary as a string
- getURI() - Static method in class org.apache.taverna.scufl2.wfdesc.ontologies.Prov_o
-
The namespace of the vocabulary as a string
- getURI() - Static method in class org.apache.taverna.scufl2.wfdesc.ontologies.Roterms
-
The namespace of the vocabulary as a string
- getURI() - Static method in class org.apache.taverna.scufl2.wfdesc.ontologies.Wf4ever
-
The namespace of the vocabulary as a string
- getURI() - Static method in class org.apache.taverna.scufl2.wfdesc.ontologies.Wfdesc
-
The namespace of the vocabulary as a string
- getURI() - Static method in class org.apache.taverna.scufl2.wfdesc.ontologies.Wfprov
-
The namespace of the vocabulary as a string
- getURIResolver() - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
-
Get URIResolver to be used in XSL Transformations which can resolve
content inside the OdfPackage
- getUriToBean() - Method in class org.apache.taverna.scufl2.rdfxml.ParserState
-
- getUriTools() - Method in class org.apache.taverna.scufl2.api.common.AbstractCloneable
-
- getUriTools() - Method in class org.apache.taverna.scufl2.api.container.WorkflowBundle
-
- getUriTools() - Static method in class org.apache.taverna.scufl2.rdfxml.RDFXMLWriter
-
- getUriTools() - Method in class org.apache.taverna.scufl2.translator.t2flow.defaultactivities.DataflowActivityParser
-
- getUriTools() - Method in class org.apache.taverna.scufl2.wfdesc.WfdescSerialiser
-
- getUrl() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
-
Gets the value of the url property.
- getUrlSignature() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
Gets the value of the urlSignature property.
- getUsableSpace() - Method in class org.apache.taverna.robundle.fs.BundleFileStore
-
- getUseCaseDescription() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
-
Gets the value of the useCaseDescription property.
- getUsecaseid() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseConfig
-
Gets the value of the usecaseid property.
- getUsecaseid() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Gets the value of the usecaseid property.
- getUsername() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellType
-
Gets the value of the username property.
- getUsername() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
-
Gets the value of the username property.
- getUserPrincipalLookupService() - Method in class org.apache.taverna.robundle.fs.BundleFileSystem
-
- getValidatorState() - Method in class org.apache.taverna.scufl2.validation.structural.StructuralValidator
-
- getValidReturnCodes() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Gets the value of the validReturnCodes property.
- getValue() - Method in class org.apache.taverna.robundle.xml.dsig.SignatureValueType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.validation.correctness.report.OutOfScopeValueProblem
-
- getValue() - Method in class org.apache.taverna.scufl2.xml.DataLink.MergePosition
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.GranularPortDepth
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.PortDepth
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.PortNode.DesiredDepth
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.ProcessorBinding.ActivityPosition
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.prov.GeneratedAtTime
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArticleNameType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.AuthorityNameType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BeanshellinputType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BeanshelloutputType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobyParameterType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ConditionStateType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.DatatypeType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.DefaultType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.DescriptionType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.EndpointType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.HostType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.InputPortType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.JarfileType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MapType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MimeTypeType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MobyEndpointType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.NodeType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.OperationType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.OutputPortType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.PortType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RepositoryType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellInputPortType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellOutputPortType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ScriptvalueType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.SemanticTypeType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ServiceNameType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ServiceType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.SoaplabwsdlType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.StatusCodeType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.StringconstantType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.TargetType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.TemplateLiteralType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.WorkflowDescriptionType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.WsdlType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.DependencyElement
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Property
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean.SymanticType
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic.Content
-
Gets the value of the value property.
- getValue() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.StringConstantConfig
-
Gets the value of the value property.
- getVersion() - Method in class org.apache.taverna.robundle.xml.odf.container.Container
-
Gets the value of the version property.
- getVersion() - Method in class org.apache.taverna.robundle.xml.odf.manifest.FileEntry
-
Gets the value of the version property.
- getVersion() - Method in class org.apache.taverna.robundle.xml.odf.manifest.Manifest
-
Gets the value of the version property.
- getVersion() - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.OdfFileEntry
-
- getVersion() - Method in class org.apache.taverna.scufl2.ucfpackage.UCFPackage.ResourceEntry
-
- getVersion() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArtifactType
-
Gets the value of the version property.
- getVersion() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ScuflType
-
Gets the value of the version property.
- getVersion() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
-
Gets the value of the version property.
- getVersion() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Raven
-
Gets the value of the version property.
- getVersion() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Workflow
-
Gets the value of the version property.
- getWarnings() - Method in class org.apache.taverna.robundle.validator.ValidationReport
-
- getWarnings_l() - Method in class org.apache.taverna.robundle.validator.ValidationReport
-
- getWasAttributedTo() - Method in class org.apache.taverna.scufl2.api.annotation.Revision
-
- getWasAttributedTo() - Method in class org.apache.taverna.scufl2.xml.roevo.VersionableResource
-
Gets the value of the wasAttributedTo property.
- getWasChangedBy() - Method in class org.apache.taverna.scufl2.xml.roevo.VersionableResource
-
Gets the value of the wasChangedBy property.
- getWasRevisionOf() - Method in class org.apache.taverna.scufl2.xml.roevo.VersionableResource
-
Gets the value of the wasRevisionOf property.
- getWay() - Method in class org.apache.taverna.tavlang.CommandLineTool.Inspect
-
- getWfBundle() - Method in class org.apache.taverna.scufl2.rdfxml.RDFXMLSerializer
-
- getWfBundleIO() - Static method in class org.apache.taverna.databundle.DataBundles
-
- GetWfStat - Class in org.apache.taverna.tavlang.tools.stats
-
- GetWfStat(List<String>, String, boolean) - Constructor for class org.apache.taverna.tavlang.tools.stats.GetWfStat
-
- getWorkers() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ProcessorType
-
Gets the value of the workers property.
- getWorkflow(Bundle) - Static method in class org.apache.taverna.databundle.DataBundles
-
- getWorkflow() - Method in class org.apache.taverna.scufl2.validation.structural.ValidatorState
-
- getWorkflow() - Method in class org.apache.taverna.scufl2.xml.WorkflowBundle
-
Gets the value of the workflow property.
- getWorkflow() - Method in class org.apache.taverna.scufl2.xml.WorkflowBundle.Workflow
-
Gets the value of the workflow property.
- getWorkflowBundle(Bundle) - Static method in class org.apache.taverna.databundle.DataBundles
-
- getWorkflowBundle() - Method in class org.apache.taverna.scufl2.validation.structural.ValidatorState
-
- getWorkflowDescription(Bundle) - Static method in class org.apache.taverna.databundle.DataBundles
-
- getWorkflowdescription() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ScuflType
-
Gets the value of the workflowdescription property.
- getWorkflowIdentifier() - Method in class org.apache.taverna.scufl2.xml.Workflow
-
Gets the value of the workflowIdentifier property.
- getWorkflowRunProvenance(Bundle) - Static method in class org.apache.taverna.databundle.DataBundles
-
- getWorkflowRunReport(Bundle) - Static method in class org.apache.taverna.databundle.DataBundles
-
- getWorkflowRunReportAsJson(Bundle) - Static method in class org.apache.taverna.databundle.DataBundles
-
- getWorkflows() - Method in class org.apache.taverna.scufl2.api.container.WorkflowBundle
-
- getWrapped() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
-
Gets the value of the wrapped property.
- getWrapped() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BasetypeType
-
Gets the value of the wrapped property.
- getWrapped() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
-
Gets the value of the wrapped property.
- getWrappedTypeXML() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.XMLSplitterConfig
-
Gets the value of the wrappedTypeXML property.
- getWriterForMediaType(String) - Method in class org.apache.taverna.scufl2.api.io.WorkflowBundleIO
-
Returns a WorkflowBundleWriter for the specified media type.
- getWriters() - Method in class org.apache.taverna.scufl2.api.io.WorkflowBundleIO
-
Returns all the available WorkflowBundleWriters.
- getWrongParentProblems() - Method in class org.apache.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
-
- getWsdl() - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
-
Gets the value of the wsdl property.
- getWsdl() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.WSDLConfig
-
Gets the value of the wsdl property.
- getX509IssuerName() - Method in class org.apache.taverna.robundle.xml.dsig.X509IssuerSerialType
-
Gets the value of the x509IssuerName property.
- getX509IssuerSerialOrX509SKIOrX509SubjectName() - Method in class org.apache.taverna.robundle.xml.dsig.X509DataType
-
Gets the value of the x509IssuerSerialOrX509SKIOrX509SubjectName property.
- getX509SerialNumber() - Method in class org.apache.taverna.robundle.xml.dsig.X509IssuerSerialType
-
Gets the value of the x509SerialNumber property.
- getXmlDocument() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.XPathConfig
-
Gets the value of the xmlDocument property.
- getXpathExpression() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.XPathConfig
-
Gets the value of the xpathExpression property.
- getXpathNamespaceMap() - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.XPathConfig
-
Gets the value of the xpathNamespaceMap property.
- getY() - Method in class org.apache.taverna.robundle.xml.dsig.DSAKeyValueType
-
Gets the value of the y property.
- getZipPath() - Method in class org.apache.taverna.robundle.fs.BundlePath
-
- givenName - Static variable in class org.apache.taverna.scufl2.wfdesc.ontologies.Foaf
-
The given name of some person.
- givenname - Static variable in class org.apache.taverna.scufl2.wfdesc.ontologies.Foaf
-
The given name of some person.
- globalBaseURI - Variable in class org.apache.taverna.scufl2.xml.WorkflowBundle
-
- granularDepth - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.GranularDepthPort
-
- GranularDepthPort - Interface in org.apache.taverna.scufl2.api.port
-
- GranularDepthPort - Class in org.apache.taverna.scufl2.xml.t2flow.jaxb
-
Java class for GranularDepthPort complex type.
- GranularDepthPort() - Constructor for class org.apache.taverna.scufl2.xml.t2flow.jaxb.GranularDepthPort
-
- GranularDepthPorts - Class in org.apache.taverna.scufl2.xml.t2flow.jaxb
-
List of ports that have both depth and granular depth.
- GranularDepthPorts() - Constructor for class org.apache.taverna.scufl2.xml.t2flow.jaxb.GranularDepthPorts
-
- GranularPortDepth - Class in org.apache.taverna.scufl2.xml
-
Java class for anonymous complex type.
- GranularPortDepth() - Constructor for class org.apache.taverna.scufl2.xml.GranularPortDepth
-
- granularPortDepth - Variable in class org.apache.taverna.scufl2.xml.OutputActivityPort
-
- granularPortDepth - Variable in class org.apache.taverna.scufl2.xml.OutputProcessorPort
-
- Group - Static variable in class org.apache.taverna.scufl2.wfdesc.ontologies.Foaf
-
A class of Agents.
- group - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
-
- Group - Class in org.apache.taverna.scufl2.xml.t2flow.jaxb
-
Java class for Group complex type.
- Group() - Constructor for class org.apache.taverna.scufl2.xml.t2flow.jaxb.Group
-
- group - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Raven
-
- group - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
- groupId - Variable in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArtifactType
-
- groupId - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
-
- guessMediaType(Path) - Method in class org.apache.taverna.robundle.manifest.Manifest
-
Guess media type based on extension
- guessMediaTypeForSignature(byte[]) - Method in class org.apache.taverna.scufl2.api.io.structure.StructureReader
-
- guessMediaTypeForSignature(byte[]) - Method in class org.apache.taverna.scufl2.api.io.WorkflowBundleIO
-
Attempt to guess the media type for a stream or file that starts with
these bytes.
- guessMediaTypeForSignature(byte[]) - Method in interface org.apache.taverna.scufl2.api.io.WorkflowBundleReader
-
Attempt to guess the media type for a stream or file that starts with
these bytes.
- guessMediaTypeForSignature(byte[]) - Method in class org.apache.taverna.scufl2.rdfxml.RDFXMLReader
-
- guessMediaTypeForSignature(byte[]) - Method in class org.apache.taverna.scufl2.translator.scufl.ScuflReader
-
- guessMediaTypeForSignature(byte[]) - Method in class org.apache.taverna.scufl2.translator.t2flow.T2FlowReader
-
- guessMediaTypeForSignature(byte[]) - Method in class org.apache.taverna.scufl2.wfdesc.WfdescReader
-
- safeCopy(Path, Path) - Static method in class org.apache.taverna.robundle.Bundles
-
- safeMove(Path, Path) - Static method in class org.apache.taverna.robundle.Bundles
-
- safeMoveOrCopy(Path, Path, boolean) - Static method in class org.apache.taverna.robundle.Bundles
-
- salt - Variable in class org.apache.taverna.robundle.xml.odf.manifest.KeyDerivation
-
- save(String) - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
-
Save the package to given filePath.
- save(File) - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
-
Save package to a given File.
- save(OutputStream) - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
-
- save(File) - Method in class org.apache.taverna.scufl2.ucfpackage.UCFPackage
-
- save(OutputStream) - Method in class org.apache.taverna.scufl2.ucfpackage.UCFPackage
-
- save(WorkflowBundle) - Method in class org.apache.taverna.scufl2.wfdesc.WfdescSerialiser
-
- save(WorkflowBundle, OutputStream) - Method in class org.apache.taverna.scufl2.wfdesc.WfdescSerialiser
-
- saveToLog(String) - Method in class org.apache.taverna.tavlang.tools.validate.Validate
-
- scanner - Variable in class org.apache.taverna.scufl2.api.io.structure.StructureReader
-
- schoolHomepage - Static variable in class org.apache.taverna.scufl2.wfdesc.ontologies.Foaf
-
A homepage of a school attended by the person.
- script - Static variable in class org.apache.taverna.scufl2.wfdesc.ontologies.Wf4ever
-
- Script - Static variable in class org.apache.taverna.scufl2.wfdesc.ontologies.Wf4ever
-
- script - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
-
- script - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
-
- ScriptInputStatic - Class in org.apache.taverna.scufl2.xml.t2flow.jaxb
-
Java class for ScriptInputStatic complex type.
- ScriptInputStatic() - Constructor for class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
-
- ScriptInputStatic.Content - Class in org.apache.taverna.scufl2.xml.t2flow.jaxb
-
Java class for anonymous complex type.
- ScriptInputUser - Class in org.apache.taverna.scufl2.xml.t2flow.jaxb
-
Java class for ScriptInputUser complex type.
- ScriptInputUser() - Constructor for class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
-
- ScriptOutput - Class in org.apache.taverna.scufl2.xml.t2flow.jaxb
-
Java class for ScriptOutput complex type.
- ScriptOutput() - Constructor for class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptOutput
-
- scriptvalue - Variable in class org.apache.taverna.scufl2.xml.scufl.jaxb.BeanshellType
-
- ScriptvalueType - Class in org.apache.taverna.scufl2.xml.scufl.jaxb
-
Java class for scriptvalueType complex type.
- ScriptvalueType() - Constructor for class org.apache.taverna.scufl2.xml.scufl.jaxb.ScriptvalueType
-
- Scufl2Convert - Class in org.apache.taverna.tavlang.tools.convert
-
- Scufl2Convert(String, List<String>, String) - Constructor for class org.apache.taverna.tavlang.tools.convert.Scufl2Convert
-
- Scufl2Convert(String, String, String) - Constructor for class org.apache.taverna.tavlang.tools.convert.Scufl2Convert
-
- Scufl2Tools - Class in org.apache.taverna.scufl2.api.common
-
Utility methods for dealing with SCUFL2 models
- Scufl2Tools() - Constructor for class org.apache.taverna.scufl2.api.common.Scufl2Tools
-
- scufl2Tools - Variable in class org.apache.taverna.scufl2.rdfxml.AbstractParser
-
- Scufl2Tools.BindingComparator - Class in org.apache.taverna.scufl2.api.common
-
- Scufl2Tools.ProcessorSplit - Class in org.apache.taverna.scufl2.api.common
-
- scufl2Uri - Static variable in class org.apache.taverna.scufl2.translator.t2flow.defaultactivities.SoaplabActivityParser
-
- scufl2Uri - Static variable in class org.apache.taverna.scufl2.translator.t2flow.defaultdispatchstack.ErrorBounceParser
-
- scufl2Uri - Static variable in class org.apache.taverna.scufl2.translator.t2flow.defaultdispatchstack.FailoverParser
-
- scufl2Uri - Static variable in class org.apache.taverna.scufl2.translator.t2flow.defaultdispatchstack.InvokeParser
-
- scufl2Uri - Static variable in class org.apache.taverna.scufl2.translator.t2flow.defaultdispatchstack.LoopParser
-
- scufl2Uri - Static variable in class org.apache.taverna.scufl2.translator.t2flow.defaultdispatchstack.ParallelizeParser
-
- scufl2Uri - Static variable in class org.apache.taverna.scufl2.translator.t2flow.defaultdispatchstack.RetryParser
-
- ScuflExtensionParser - Interface in org.apache.taverna.scufl2.translator.scufl
-
- scuflExtensionParsers - Variable in class org.apache.taverna.scufl2.translator.scufl.ScuflParser
-
- ScuflParser - Class in org.apache.taverna.scufl2.translator.scufl
-
WARNING! Incomplete class.
- ScuflParser() - Constructor for class org.apache.taverna.scufl2.translator.scufl.ScuflParser
-
- ScuflReader - Class in org.apache.taverna.scufl2.translator.scufl
-
- ScuflReader() - Constructor for class org.apache.taverna.scufl2.translator.scufl.ScuflReader
-
- ScuflType - Class in org.apache.taverna.scufl2.xml.scufl.jaxb
-
Java class for scuflType complex type.
- ScuflType() - Constructor for class org.apache.taverna.scufl2.xml.scufl.jaxb.ScuflType
-
- secondaries - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyConfig
-
- SECURITY - Static variable in class org.apache.taverna.scufl2.translator.t2flow.defaultactivities.WSDLActivityParser
-
- SECURITY - Static variable in class org.apache.taverna.scufl2.wfdesc.WfdescSerialiser
-
- securityProfile - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.WSDLConfig
-
- seeAlso - Variable in class org.apache.taverna.scufl2.xml.Configuration
-
- SeeAlso - Class in org.apache.taverna.scufl2.xml.rdfs
-
Java class for anonymous complex type.
- SeeAlso() - Constructor for class org.apache.taverna.scufl2.xml.rdfs.SeeAlso
-
- seeAlso - Variable in class org.apache.taverna.scufl2.xml.SeeAlsoType
-
- seeAlso - Variable in class org.apache.taverna.scufl2.xml.Workflow
-
- seeAlso - Variable in class org.apache.taverna.scufl2.xml.WorkflowBundle
-
- SeeAlsoType - Class in org.apache.taverna.scufl2.xml
-
Java class for SeeAlsoType complex type.
- SeeAlsoType() - Constructor for class org.apache.taverna.scufl2.xml.SeeAlsoType
-
- seed - Variable in class org.apache.taverna.robundle.xml.dsig.DSAKeyValueType
-
- SemanticAnnotation - Class in org.apache.taverna.scufl2.xml.t2flow.jaxb
-
Java class for SemanticAnnotation complex type.
- SemanticAnnotation() - Constructor for class org.apache.taverna.scufl2.xml.t2flow.jaxb.SemanticAnnotation
-
- semanticType - Variable in class org.apache.taverna.scufl2.xml.scufl.jaxb.MetadataType
-
- SemanticTypeType - Class in org.apache.taverna.scufl2.xml.scufl.jaxb
-
Java class for semanticTypeType complex type.
- SemanticTypeType() - Constructor for class org.apache.taverna.scufl2.xml.scufl.jaxb.SemanticTypeType
-
- SenderPort - Interface in org.apache.taverna.scufl2.api.port
-
- sendHTTPExpectRequestHeader - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
- sendTo - Variable in class org.apache.taverna.scufl2.xml.DataLink
-
- service - Variable in class org.apache.taverna.scufl2.xml.scufl.jaxb.InfernoType
-
- service() - Method in class org.apache.taverna.tavlang.tools.inspect.ServiceTypes
-
- serviceName - Variable in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobyobjectType
-
- serviceName - Variable in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobywsdlType
-
- serviceName - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyObjectConfig
-
- ServiceNameType - Class in org.apache.taverna.scufl2.xml.scufl.jaxb
-
Java class for serviceNameType complex type.
- ServiceNameType() - Constructor for class org.apache.taverna.scufl2.xml.scufl.jaxb.ServiceNameType
-
- ServiceType - Class in org.apache.taverna.scufl2.xml.scufl.jaxb
-
Java class for serviceType complex type.
- ServiceType() - Constructor for class org.apache.taverna.scufl2.xml.scufl.jaxb.ServiceType
-
- serviceType - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyConfig
-
- ServiceTypes - Class in org.apache.taverna.examples
-
- ServiceTypes() - Constructor for class org.apache.taverna.examples.ServiceTypes
-
- serviceTypes(String[]) - Method in class org.apache.taverna.examples.ServiceTypes
-
- servicetypes - Static variable in class org.apache.taverna.tavlang.CommandLineTool.Inspect
-
- ServiceTypes - Class in org.apache.taverna.tavlang.tools.inspect
-
- ServiceTypes(List<String>, String) - Constructor for class org.apache.taverna.tavlang.tools.inspect.ServiceTypes
-
- serviceURI - Static variable in class org.apache.taverna.scufl2.wfdesc.ontologies.Wf4ever
-
- setAbout(List<URI>) - Method in class org.apache.taverna.robundle.manifest.PathAnnotation
-
- setAbout(Path) - Method in class org.apache.taverna.robundle.manifest.PathAnnotation
-
- setAbout(URI) - Method in class org.apache.taverna.robundle.manifest.PathAnnotation
-
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.Activity
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.Blocking
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.Configuration
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.CrossProduct
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.DataLink
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.DispatchStack
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.DispatchStackLayer
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.DotProduct
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.InputActivityPort
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.InputPortBinding
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.InputProcessorPort
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.InputWorkflowPort
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.IterationStrategyStack
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.OutputActivityPort
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.OutputPortBinding
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.OutputProcessorPort
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.OutputWorkflowPort
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.PortNode
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.Processor
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.ProcessorBinding
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.Profile
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.rdf.Description
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.roevo.VersionableResource
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.SeeAlsoType
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.Workflow
-
Sets the value of the about property.
- setAbout(String) - Method in class org.apache.taverna.scufl2.xml.WorkflowBundle
-
Sets the value of the about property.
- setAcceptsHeaderValue(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
Sets the value of the acceptsHeaderValue property.
- setAction(ActionType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.CoordinationType
-
Sets the value of the action property.
- setActivities(Set<Activity>) - Method in class org.apache.taverna.scufl2.api.profiles.Profile
-
Sets the Activitys that this Profile contains.
- setActivities(Activities) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Processor
-
Sets the value of the activities property.
- setActivityInputs(ActivityInputs) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
Sets the value of the activityInputs property.
- setActivityPosition(Integer) - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorBinding
-
Sets the relative position of the bound Activity within the
processor (for the purpose of Failover).
- setActivityPosition(ProcessorBinding.ActivityPosition) - Method in class org.apache.taverna.scufl2.xml.ProcessorBinding
-
Sets the value of the activityPosition property.
- setAddition(Change) - Method in class org.apache.taverna.scufl2.xml.roevo.ChangeSpecification.HasChange
-
Sets the value of the addition property.
- setAdditionOf(Set<URI>) - Method in class org.apache.taverna.scufl2.api.annotation.Revision
-
- setAggregatedBy(Agent) - Method in class org.apache.taverna.robundle.manifest.Proxy
-
- setAggregatedOn(FileTime) - Method in class org.apache.taverna.robundle.manifest.Proxy
-
- setAggregates(List<PathMetadata>) - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- setAlgorithm(String) - Method in class org.apache.taverna.robundle.xml.dsig.CanonicalizationMethodType
-
Sets the value of the algorithm property.
- setAlgorithm(String) - Method in class org.apache.taverna.robundle.xml.dsig.DigestMethodType
-
Sets the value of the algorithm property.
- setAlgorithm(String) - Method in class org.apache.taverna.robundle.xml.dsig.SignatureMethodType
-
Sets the value of the algorithm property.
- setAlgorithm(String) - Method in class org.apache.taverna.robundle.xml.dsig.TransformType
-
Sets the value of the algorithm property.
- setAlgorithm(Algorithm) - Method in class org.apache.taverna.robundle.xml.odf.manifest.EncryptionData
-
Sets the value of the algorithm property.
- setAlgorithm(String) - Method in class org.apache.taverna.robundle.xml.xenc.AgreementMethodType
-
Sets the value of the algorithm property.
- setAlgorithm(String) - Method in class org.apache.taverna.robundle.xml.xenc.EncryptionMethodType
-
Sets the value of the algorithm property.
- setAlgorithm(Algorithm) - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.EncryptionData
-
- setAlgorithmName(String) - Method in class org.apache.taverna.robundle.xml.odf.manifest.Algorithm
-
Sets the value of the algorithmName property.
- setAllRows(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
-
Sets the value of the allRows property.
- setAnnotatedAt(Calendar) - Method in class org.apache.taverna.scufl2.api.annotation.Annotation
-
- setAnnotatedBy(URI) - Method in class org.apache.taverna.scufl2.api.annotation.Annotation
-
- setAnnotation(URI) - Method in class org.apache.taverna.robundle.manifest.PathAnnotation
-
Deprecated.
- setAnnotationAssertions(AnnotationAssertionImpl) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotationChain.NetSfTavernaT2AnnotationAnnotationChainImpl
-
Sets the value of the annotationAssertions property.
- setAnnotationBean(AnnotationBean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl
-
Sets the value of the annotationBean property.
- setAnnotations(List<PathAnnotation>) - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- setAnnotations(NamedSet<Annotation>) - Method in class org.apache.taverna.scufl2.api.container.WorkflowBundle
-
- setAnnotations(Annotations) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Activity
-
Sets the value of the annotations property.
- setAnnotations(Annotations) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotatedGranularDepthPort
-
Sets the value of the annotations property.
- setAnnotations(Annotations) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotatedPort
-
Sets the value of the annotations property.
- setAnnotations(Annotations) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Dataflow
-
Sets the value of the annotations property.
- setAnnotations(Annotations) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Processor
-
Sets the value of the annotations property.
- setAny(Object) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomartType
-
Sets the value of the any property.
- setAny(Object) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.OriginalConfigBean
-
Sets the value of the any property.
- setApiConsumerDescription(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Sets the value of the apiConsumerDescription property.
- setApiConsumerName(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Sets the value of the apiConsumerName property.
- setArraytype(ArraytypeType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ElementtypeType
-
Sets the value of the arraytype property.
- setArraytype(ArraytypeType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ExtensionsType
-
Sets the value of the arraytype property.
- setArticleName(ArticleNameType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobyparserType
-
Sets the value of the articleName property.
- setArticleNameUsedByService(Object) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyParserConfig
-
Sets the value of the articleNameUsedByService property.
- setArtifact(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArtifactType
-
Sets the value of the artifact property.
- setArtifact(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Raven
-
Sets the value of the artifact property.
- setArtifactDependencies(ArtifactDependencies) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Sets the value of the artifactDependencies property.
- setArtifactDependencies(ArtifactDependencies) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
-
Sets the value of the artifactDependencies property.
- setArtifactId(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
-
Sets the value of the artifactId property.
- setAttribute(Path, String, Object, LinkOption...) - Method in class org.apache.taverna.robundle.fs.BundleFileSystemProvider
-
- setAuthor(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.WorkflowDescriptionType
-
Sets the value of the author property.
- setAuthoredBy(List<Agent>) - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- setAuthoredBy(List<Agent>) - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
- setAuthoredOn(FileTime) - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- setAuthoredOn(FileTime) - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
- setAuthorityName(AuthorityNameType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobyobjectType
-
Sets the value of the authorityName property.
- setAuthorityName(AuthorityNameType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobywsdlType
-
Sets the value of the authorityName property.
- setAuthorityName(Object) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyObjectConfig
-
Sets the value of the authorityName property.
- setBackoff(Double) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.SoaplabwsdlType
-
Sets the value of the backoff property.
- setBackoffFactor(double) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RetryConfig
-
Sets the value of the backoffFactor property.
- setBase(String) - Method in class org.apache.taverna.scufl2.xml.rdf.RDF
-
Sets the value of the base property.
- setBasetype(BasetypeType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ElementtypeType
-
Sets the value of the basetype property.
- setBeanshellinputlist(BeanshellinputlistType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BeanshellType
-
Sets the value of the beanshellinputlist property.
- setBeanshelloutputlist(BeanshelloutputlistType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BeanshellType
-
Sets the value of the beanshelloutputlist property.
- setBeanToUri(Map<WorkflowBean, URI>) - Method in class org.apache.taverna.scufl2.rdfxml.ParserState
-
- setBinary(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
-
Sets the value of the binary property.
- setBinary(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
-
Sets the value of the binary property.
- setBinary(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptOutput
-
Sets the value of the binary property.
- setBindActivity(Resource) - Method in class org.apache.taverna.scufl2.xml.ProcessorBinding
-
Sets the value of the bindActivity property.
- setBindInputActivityPort(Resource) - Method in class org.apache.taverna.scufl2.xml.InputPortBinding
-
Sets the value of the bindInputActivityPort property.
- setBindInputProcessorPort(Resource) - Method in class org.apache.taverna.scufl2.xml.InputPortBinding
-
Sets the value of the bindInputProcessorPort property.
- setBindOutputActivityPort(Resource) - Method in class org.apache.taverna.scufl2.xml.OutputPortBinding
-
Sets the value of the bindOutputActivityPort property.
- setBindOutputProcessorPort(Resource) - Method in class org.apache.taverna.scufl2.xml.OutputPortBinding
-
Sets the value of the bindOutputProcessorPort property.
- setBindProcessor(Resource) - Method in class org.apache.taverna.scufl2.xml.ProcessorBinding
-
Sets the value of the bindProcessor property.
- setBlock(Processor) - Method in class org.apache.taverna.scufl2.api.core.BlockingControlLink
-
Sets the Processor that is blocked from starting.
- setBlock(Resource) - Method in class org.apache.taverna.scufl2.xml.Blocking
-
Sets the value of the block property.
- setBlocking(Blocking) - Method in class org.apache.taverna.scufl2.xml.Control
-
Sets the value of the blocking property.
- setBody(URI) - Method in class org.apache.taverna.scufl2.api.annotation.Annotation
-
- setBoring(Boolean) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ProcessorType
-
Sets the value of the boring property.
- setBoundActivity(Activity) - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorBinding
-
Sets the Activity that will be used to enact the Processor
if this ProcessorBinding is used.
- setBoundActivityPort(InputActivityPort) - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorInputPortBinding
-
Sets the InputActivityPort to which data is actually sent
when passed to the bound InputProcessorPort.
- setBoundActivityPort(OutputActivityPort) - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorOutputPortBinding
-
Sets the OutputActivityPort from which data is received for
the bound OutputProcessorPort.
- setBoundActivityPort(A) - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorPortBinding
-
- setBoundProcessor(Processor) - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorBinding
-
Sets the Processor for which a possible means of enactment
is specified.
- setBoundProcessorPort(InputProcessorPort) - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorInputPortBinding
-
Sets the InputProcessorPort that the binding is for.
- setBoundProcessorPort(OutputProcessorPort) - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorOutputPortBinding
-
Sets the OutputProcessorPort that the binding is for.
- setBoundProcessorPort(P) - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorPortBinding
-
- setBreakpoint(Boolean) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
-
Sets the value of the breakpoint property.
- setBreakpoint(Boolean) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.LocalType
-
Sets the value of the breakpoint property.
- setBundle(Bundle) - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- setBundledAs(Proxy) - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
- setCachedHttpClientInJsonLD() - Static method in class org.apache.taverna.robundle.manifest.RDFToManifest
-
Use a JarCacheStorage so that our JSON-LD @context can be loaded from our
classpath and not require network connectivity
- setCanonicalizationMethod(CanonicalizationMethodType) - Method in class org.apache.taverna.robundle.xml.dsig.SignedInfoType
-
Sets the value of the canonicalizationMethod property.
- setCarriedKeyName(String) - Method in class org.apache.taverna.robundle.xml.xenc.EncryptedKeyType
-
Sets the value of the carriedKeyName property.
- setCategory(BioMobyCategory) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyConfig
-
Sets the value of the category property.
- setCausedBy(List<Path>) - Method in class org.apache.taverna.databundle.ErrorDocument
-
- setChangeSpecification(ChangeSpecification) - Method in class org.apache.taverna.scufl2.xml.roevo.VersionableResource.WasChangedBy
-
Sets the value of the changeSpecification property.
- setChangeSpecificationType(URI) - Method in class org.apache.taverna.scufl2.api.annotation.Revision
-
- setCharsetName(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
-
Sets the value of the charsetName property.
- setCharsetName(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
-
Sets the value of the charsetName property.
- setChecksum(byte[]) - Method in class org.apache.taverna.robundle.xml.odf.manifest.EncryptionData
-
Sets the value of the checksum property.
- setChecksum(String) - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.EncryptionData
-
- setChecksumType(String) - Method in class org.apache.taverna.robundle.xml.odf.manifest.EncryptionData
-
Sets the value of the checksumType property.
- setChecksumType(String) - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.EncryptionData
-
- setChild(Integer) - Method in class org.apache.taverna.baclava.RelationType
-
Sets the value of the child property.
- setCipherData(CipherDataType) - Method in class org.apache.taverna.robundle.xml.xenc.EncryptedType
-
Sets the value of the cipherData property.
- setCipherReference(CipherReferenceType) - Method in class org.apache.taverna.robundle.xml.xenc.CipherDataType
-
Sets the value of the cipherReference property.
- setCipherValue(byte[]) - Method in class org.apache.taverna.robundle.xml.xenc.CipherDataType
-
Sets the value of the cipherValue property.
- setClassloader(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.DependenciesType
-
Sets the value of the classloader property.
- setClassLoaderSharing(ClassLoaderSharing) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Sets the value of the classLoaderSharing property.
- setClassLoaderSharing(ClassLoaderSharing) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
-
Sets the value of the classLoaderSharing property.
- setClassName(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Sets the value of the className property.
- setClazz(ClassType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
-
Sets the value of the clazz property.
- setClazz(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Activity
-
Sets the value of the clazz property.
- setClazz(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ActivityPortDefinitionBean.MimeTypes
-
Sets the value of the clazz property.
- setClazz(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotationBean
-
Sets the value of the clazz property.
- setClazz(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Dependencies
-
Sets the value of the clazz property.
- setClazz(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.DependencyElement
-
Sets the value of the clazz property.
- setClazz(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.DispatchLayer
-
Sets the value of the clazz property.
- setClazz(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic.Content
-
Sets the value of the clazz property.
- setColumnNames(SpreadsheetColumnNames) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
-
Sets the value of the columnNames property.
- setColumnRange(SpreadsheetRange) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
-
Sets the value of the columnRange property.
- setCommand(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Sets the value of the command property.
- setComplextype(ComplextypeType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ElementtypeType
-
Sets the value of the complextype property.
- setComplextype(ComplextypeType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ExtensionsType
-
Sets the value of the complextype property.
- setComponentName(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ComponentConfig
-
Sets the value of the componentName property.
- setComponentVersion(Integer) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ComponentConfig
-
Sets the value of the componentVersion property.
- setConcatenate(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
-
Sets the value of the concatenate property.
- setCondition(ConditionType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.CoordinationType
-
Sets the value of the condition property.
- setConditions(Conditions) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Dataflow
-
Sets the value of the conditions property.
- setConditionXML(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.LoopConfig
-
Sets the value of the conditionXML property.
- setConfigBean(ConfigBean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Activity
-
Sets the value of the configBean property.
- setConfigBean(ConfigBean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.DispatchLayer
-
Sets the value of the configBean property.
- setConfigurations(Set<Configuration>) - Method in class org.apache.taverna.scufl2.api.profiles.Profile
-
Sets the Configurations that this Profile
contains.
- setConfigure(Resource) - Method in class org.apache.taverna.scufl2.xml.Configuration
-
Sets the value of the configure property.
- setConfigures(Configurable) - Method in class org.apache.taverna.scufl2.api.configurations.Configuration
-
- setConformsTo(URI) - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
- setConnectionSettings(RShellConnection) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
-
Sets the value of the connectionSettings property.
- setConstantStringValue(Processor, String, Profile) - Method in class org.apache.taverna.scufl2.api.common.Scufl2Tools
-
- setConstructor(Boolean) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MethodType
-
Sets the value of the constructor property.
- setContent(Path) - Method in class org.apache.taverna.robundle.manifest.PathAnnotation
-
- setContent(URI) - Method in class org.apache.taverna.robundle.manifest.PathAnnotation
-
- setContent(ScriptInputStatic.Content) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
-
Sets the value of the content property.
- setContentTypeForUpdates(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
Sets the value of the contentTypeForUpdates property.
- setControl(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Condition
-
Sets the value of the control property.
- setControlLinks(Set<ControlLink>) - Method in class org.apache.taverna.scufl2.api.core.Workflow
-
Set the ControlLinks to be the contents of the specified
set.
- setCreatedBy(Agent) - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- setCreatedBy(Agent) - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
- setCreatedOn(FileTime) - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- setCreatedOn(FileTime) - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
- setCreators(Object) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl
-
Sets the value of the creators property.
- setCritical(Boolean) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
-
Sets the value of the critical property.
- setCritical(Boolean) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.LocalType
-
Sets the value of the critical property.
- setCross(CrossType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.CrossType
-
Sets the value of the cross property.
- setCross(CrossType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.DotType
-
Sets the value of the cross property.
- setCross(CrossType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.IterationstrategyType
-
Sets the value of the cross property.
- setCross(CrossProduct) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.TopIterationNode
-
Sets the value of the cross property.
- setCsvDelimiter(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
-
Sets the value of the csvDelimiter property.
- setCurationEventList(Object) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl
-
Sets the value of the curationEventList property.
- setCurrentActivity(Activity) - Method in class org.apache.taverna.scufl2.translator.scufl.ParserState
-
- setCurrentActivity(Activity) - Method in class org.apache.taverna.scufl2.translator.t2flow.ParserState
-
- setCurrentBase(URI) - Method in class org.apache.taverna.scufl2.rdfxml.ParserState
-
- setCurrentConfigurable(Configurable) - Method in class org.apache.taverna.scufl2.translator.t2flow.ParserState
-
- setCurrentConfiguration(Configuration) - Method in class org.apache.taverna.scufl2.translator.t2flow.ParserState
-
- setCurrentExtensionParser(ScuflExtensionParser) - Method in class org.apache.taverna.scufl2.translator.scufl.ParserState
-
- setCurrentParser(ScuflParser) - Method in class org.apache.taverna.scufl2.translator.scufl.ParserState
-
- setCurrentProcessor(Processor) - Method in class org.apache.taverna.scufl2.translator.scufl.ParserState
-
- setCurrentProcessor(Processor) - Method in class org.apache.taverna.scufl2.translator.t2flow.ParserState
-
- setCurrentProcessorBinding(ProcessorBinding) - Method in class org.apache.taverna.scufl2.translator.t2flow.ParserState
-
- setCurrentProfile(Profile) - Method in class org.apache.taverna.scufl2.translator.scufl.ParserState
-
- setCurrentProfile(Profile) - Method in class org.apache.taverna.scufl2.translator.t2flow.ParserState
-
- setCurrentRevision(Revision) - Method in interface org.apache.taverna.scufl2.api.annotation.Revisioned
-
Set the current Revision.
- setCurrentRevision(Revision) - Method in class org.apache.taverna.scufl2.api.common.AbstractRevisioned
-
- setCurrentT2Parser(T2Parser) - Method in class org.apache.taverna.scufl2.translator.t2flow.ParserState
-
- setCurrentWorkflow(Workflow) - Method in class org.apache.taverna.scufl2.translator.scufl.ParserState
-
- setCurrentWorkflow(Workflow) - Method in class org.apache.taverna.scufl2.translator.t2flow.ParserState
-
- setCurrentWorkflowBundle(WorkflowBundle) - Method in class org.apache.taverna.scufl2.translator.scufl.ParserState
-
- setCurrentWorkflowBundle(WorkflowBundle) - Method in class org.apache.taverna.scufl2.translator.t2flow.ParserState
-
- setDataElement(DataElementType) - Method in class org.apache.taverna.baclava.MyGridDataDocumentType
-
Sets the value of the dataElement property.
- setDataElementData(String) - Method in class org.apache.taverna.baclava.DataElementType
-
Sets the value of the dataElementData property.
- setDataLink(DataLink) - Method in class org.apache.taverna.scufl2.xml.DataLinkEntry
-
Sets the value of the dataLink property.
- setDataLinkResolvedDepth(DataLink, Integer) - Method in class org.apache.taverna.scufl2.validation.structural.ValidatorState
-
- setDataLinks(Set<DataLink>) - Method in class org.apache.taverna.scufl2.api.core.Workflow
-
Set the DataLinks to be the contents of the specified set.
- setDatalinks(Datalinks) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Dataflow
-
Sets the value of the datalinks property.
- setDatatype(String) - Method in class org.apache.taverna.scufl2.xml.DataLink.MergePosition
-
Sets the value of the datatype property.
- setDatatype(String) - Method in class org.apache.taverna.scufl2.xml.GranularPortDepth
-
Sets the value of the datatype property.
- setDatatype(String) - Method in class org.apache.taverna.scufl2.xml.PortDepth
-
Sets the value of the datatype property.
- setDatatype(String) - Method in class org.apache.taverna.scufl2.xml.PortNode.DesiredDepth
-
Sets the value of the datatype property.
- setDatatype(String) - Method in class org.apache.taverna.scufl2.xml.ProcessorBinding.ActivityPosition
-
Sets the value of the datatype property.
- setDatatype(String) - Method in class org.apache.taverna.scufl2.xml.prov.GeneratedAtTime
-
Sets the value of the datatype property.
- setDatatype(String) - Method in class org.apache.taverna.scufl2.xml.Required
-
Sets the value of the datatype property.
- setDatatype(DatatypeType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobyparserType
-
Sets the value of the datatype property.
- setDatatypeName(Object) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyParserConfig
-
Sets the value of the datatypeName property.
- setDate(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl
-
Sets the value of the date property.
- setDefaults(DefaultsType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ProcessorType
-
Sets the value of the defaults property.
- setDeleteOnClose(boolean) - Method in class org.apache.taverna.robundle.Bundle
-
- setDependencies(DependenciesType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
-
Sets the value of the dependencies property.
- setDependencies(DependenciesType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BeanshellType
-
Sets the value of the dependencies property.
- setDependencies(Dependencies) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
-
Sets the value of the dependencies property.
- setDepth(Integer) - Method in class org.apache.taverna.scufl2.api.port.AbstractDepthPort
-
Sets the depth of the Port.
- setDepth(Integer) - Method in interface org.apache.taverna.scufl2.api.port.DepthPort
-
Sets the depth of the Port.
- setDepth(BigInteger) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.FlattenlistType
-
Sets the value of the depth property.
- setDepth(BigInteger) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.SlicelistType
-
Sets the value of the depth property.
- setDepth(BigInteger) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.DepthPort
-
Sets the value of the depth property.
- setDepth(BigInteger) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.PortProduct
-
Sets the value of the depth property.
- setDescription(DescriptionType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
-
Sets the value of the description property.
- setDescription(DescriptionType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobyparserType
-
Sets the value of the description property.
- setDescription(DescriptionType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MetadataType
-
Sets the value of the description property.
- setDescription(DescriptionType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ProcessorType
-
Sets the value of the description property.
- setDescription(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Sets the value of the description property.
- setDescription(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Sets the value of the description property.
- setDesiredDepth(Integer) - Method in class org.apache.taverna.scufl2.api.iterationstrategy.PortNode
-
- setDesiredDepth(PortNode.DesiredDepth) - Method in class org.apache.taverna.scufl2.xml.PortNode
-
Sets the value of the desiredDepth property.
- setDeUniLuebeckInbKnowarcUsecasesScriptInputUser(ScriptInputUser) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Entry
-
Sets the value of the deUniLuebeckInbKnowarcUsecasesScriptInputUser property.
- setDeUniLuebeckInbKnowarcUsecasesScriptOutput(ScriptOutput) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Entry
-
Sets the value of the deUniLuebeckInbKnowarcUsecasesScriptOutput property.
- setDigestMethod(DigestMethodType) - Method in class org.apache.taverna.robundle.xml.dsig.ReferenceType
-
Sets the value of the digestMethod property.
- setDigestValue(byte[]) - Method in class org.apache.taverna.robundle.xml.dsig.ReferenceType
-
Sets the value of the digestValue property.
- setDimension(BigInteger) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ApiConsumerParameterType
-
Sets the value of the dimension property.
- setDimension(BigInteger) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MethodType
-
Sets the value of the dimension property.
- setDispatchConfigs(Map<Processor, ObjectNode>) - Method in class org.apache.taverna.scufl2.rdfxml.ParserState
-
- setDispatchStack(DispatchStack) - Method in class org.apache.taverna.scufl2.xml.Processor.DispatchStack
-
Sets the value of the dispatchStack property.
- setDispatchStack(Processor.DispatchStack) - Method in class org.apache.taverna.scufl2.xml.Processor
-
Sets the value of the dispatchStack property.
- setDispatchStack(DispatchStack) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Processor
-
Sets the value of the dispatchStack property.
- setDispatchStackLayers(DispatchStack.DispatchStackLayers) - Method in class org.apache.taverna.scufl2.xml.DispatchStack
-
Sets the value of the dispatchStackLayers property.
- setDot(DotType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.CrossType
-
Sets the value of the dot property.
- setDot(DotType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.DotType
-
Sets the value of the dot property.
- setDot(DotType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.IterationstrategyType
-
Sets the value of the dot property.
- setDot(DotProduct) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.TopIterationNode
-
Sets the value of the dot property.
- setEdited(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
-
Sets the value of the edited property.
- setElement(DependencyElement) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ActivityPortDefinitionBean.MimeTypes
-
Sets the value of the element property.
- setElements(ElementsType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
-
Sets the value of the elements property.
- setElementtype(ElementtypeType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
-
Sets the value of the elementtype property.
- setEmptyCellPolicy(SpreadsheetEmptyCellPolicy) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
-
Sets the value of the emptyCellPolicy property.
- setEmptyCellValue(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
-
Sets the value of the emptyCellValue property.
- setEncoding(String) - Method in class org.apache.taverna.robundle.xml.dsig.ObjectType
-
Sets the value of the encoding property.
- setEncoding(String) - Method in class org.apache.taverna.robundle.xml.xenc.EncryptedType
-
Sets the value of the encoding property.
- setEncoding(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotationChain
-
Sets the value of the encoding property.
- setEncoding(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.OriginalConfigBean
-
Sets the value of the encoding property.
- setEncryption(Container.Encryption) - Method in class org.apache.taverna.robundle.xml.odf.container.Container
-
Sets the value of the encryption property.
- setEncryptionData(EncryptionData) - Method in class org.apache.taverna.robundle.xml.odf.manifest.FileEntry
-
Sets the value of the encryptionData property.
- setEncryptionData(EncryptionData) - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.OdfFileEntry
-
- setEncryptionMethod(EncryptionMethodType) - Method in class org.apache.taverna.robundle.xml.xenc.EncryptedType
-
Sets the value of the encryptionMethod property.
- setEncryptionProperties(EncryptionPropertiesType) - Method in class org.apache.taverna.robundle.xml.xenc.EncryptedType
-
Sets the value of the encryptionProperties property.
- setEnd(BigInteger) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetRange
-
Sets the value of the end property.
- setEndpoint(EndpointType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobyparserType
-
Sets the value of the endpoint property.
- setEndpoint(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SoaplabConfig
-
Sets the value of the endpoint property.
- setError(Path, ErrorDocument) - Static method in class org.apache.taverna.databundle.DataBundles
-
- setError(Path, String, String, Path...) - Static method in class org.apache.taverna.databundle.DataBundles
-
- setErrorList(ArrayList<String>) - Method in class org.apache.taverna.robundle.validator.ValidationReport
-
- setEscapeParameters(Boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
Sets the value of the escapeParameters property.
- setEventListener(StructuralValidationListener) - Method in class org.apache.taverna.scufl2.validation.structural.ValidatorState
-
- setExcludeFirstRow(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
-
Sets the value of the excludeFirstRow property.
- setExcludes(SpreadsheetExcludes) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetRange
-
Sets the value of the excludes property.
- setExecutionTimeoutInSeconds(int) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Sets the value of the executionTimeoutInSeconds property.
- setExponent(byte[]) - Method in class org.apache.taverna.robundle.xml.dsig.RSAKeyValueType
-
Sets the value of the exponent property.
- setExternaltoolid(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
-
Sets the value of the externaltoolid property.
- setFamilyName(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ComponentConfig
-
Sets the value of the familyName property.
- setFile(Path) - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
- setFile(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
-
Sets the value of the file property.
- setFile(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
-
Sets the value of the file property.
- setFilename(String) - Method in class org.apache.taverna.robundle.manifest.Proxy
-
- setFlattenlist(FlattenlistType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ExtensionsType
-
Sets the value of the flattenlist property.
- setFolder(Path) - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
Deprecated.
- setFolder(Path) - Method in class org.apache.taverna.robundle.manifest.Proxy
-
- setForceCopy(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
-
Sets the value of the forceCopy property.
- setForceCopy(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
-
Sets the value of the forceCopy property.
- setFormat(String) - Method in class org.apache.taverna.robundle.xml.combine.Content
-
Sets the value of the format property.
- setFrom(StatusCodeType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.StatechangeType
-
Sets the value of the from property.
- setFrom(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Mapping
-
Sets the value of the from property.
- setFromVersion(Resource) - Method in class org.apache.taverna.scufl2.xml.roevo.ChangeSpecification
-
Sets the value of the fromVersion property.
- setFullPath(String) - Method in class org.apache.taverna.robundle.xml.odf.container.RootFile
-
Sets the value of the fullPath property.
- setFullPath(String) - Method in class org.apache.taverna.robundle.xml.odf.manifest.FileEntry
-
Sets the value of the fullPath property.
- setG(byte[]) - Method in class org.apache.taverna.robundle.xml.dsig.DSAKeyValueType
-
Sets the value of the g property.
- setGeneratedAtTime(Calendar) - Method in class org.apache.taverna.scufl2.api.annotation.Revision
-
- setGeneratedAtTime(GeneratedAtTime) - Method in class org.apache.taverna.scufl2.xml.roevo.VersionableResource
-
Sets the value of the generatedAtTime property.
- setGlobalBaseURI(URI) - Method in interface org.apache.taverna.scufl2.api.common.Root
-
- setGlobalBaseURI(URI) - Method in class org.apache.taverna.scufl2.api.container.WorkflowBundle
-
- setGlobalBaseURI(Resource) - Method in class org.apache.taverna.scufl2.xml.WorkflowBundle
-
Sets the value of the globalBaseURI property.
- setGranularDepth(Integer) - Method in class org.apache.taverna.scufl2.api.port.AbstractGranularDepthPort
-
Sets the granular depth of the Port.
- setGranularDepth(Integer) - Method in interface org.apache.taverna.scufl2.api.port.GranularDepthPort
-
Sets the granular depth of the Port.
- setGranularDepth(BigInteger) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.GranularDepthPort
-
Sets the value of the granularDepth property.
- setGranularPortDepth(GranularPortDepth) - Method in class org.apache.taverna.scufl2.xml.OutputActivityPort
-
Sets the value of the granularPortDepth property.
- setGranularPortDepth(GranularPortDepth) - Method in class org.apache.taverna.scufl2.xml.OutputProcessorPort
-
Sets the value of the granularPortDepth property.
- setGraph(List<String>) - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- setGroup(Group) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
-
Sets the value of the group property.
- setGroup(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Raven
-
Sets the value of the group property.
- setGroup(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Sets the value of the group property.
- setGroupId(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArtifactType
-
Sets the value of the groupId property.
- setGroupId(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
-
Sets the value of the groupId property.
- setHadOriginalSources(Set<Revision>) - Method in class org.apache.taverna.scufl2.api.annotation.Revision
-
- setHashCode(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
-
Sets the value of the hashCode property.
- setHistory(List<Path>) - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- setHost(HostType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.InfernoType
-
Sets the value of the host property.
- setHost(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
-
Sets the value of the host property.
- setHostname(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellType
-
Sets the value of the hostname property.
- setHttpMethod(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
Sets the value of the httpMethod property.
- setId(URI) - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- setId(String) - Method in class org.apache.taverna.robundle.xml.dsig.KeyInfoType
-
Sets the value of the id property.
- setId(String) - Method in class org.apache.taverna.robundle.xml.dsig.ManifestType
-
Sets the value of the id property.
- setId(String) - Method in class org.apache.taverna.robundle.xml.dsig.ObjectType
-
Sets the value of the id property.
- setId(String) - Method in class org.apache.taverna.robundle.xml.dsig.ReferenceType
-
Sets the value of the id property.
- setId(String) - Method in class org.apache.taverna.robundle.xml.dsig.SignaturePropertiesType
-
Sets the value of the id property.
- setId(String) - Method in class org.apache.taverna.robundle.xml.dsig.SignaturePropertyType
-
Sets the value of the id property.
- setId(String) - Method in class org.apache.taverna.robundle.xml.dsig.SignatureType
-
Sets the value of the id property.
- setId(String) - Method in class org.apache.taverna.robundle.xml.dsig.SignatureValueType
-
Sets the value of the id property.
- setId(String) - Method in class org.apache.taverna.robundle.xml.dsig.SignedInfoType
-
Sets the value of the id property.
- setId(String) - Method in class org.apache.taverna.robundle.xml.xenc.EncryptedType
-
Sets the value of the id property.
- setId(String) - Method in class org.apache.taverna.robundle.xml.xenc.EncryptionPropertiesType
-
Sets the value of the id property.
- setId(String) - Method in class org.apache.taverna.robundle.xml.xenc.EncryptionPropertyType
-
Sets the value of the id property.
- setId(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
-
Sets the value of the id property.
- setId(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
-
Sets the value of the id property.
- setId(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Dataflow
-
Sets the value of the id property.
- setIdentifier(URI) - Method in class org.apache.taverna.scufl2.api.annotation.Revision
-
- setIdentifier(URI) - Method in interface org.apache.taverna.scufl2.api.annotation.Revisioned
-
Set the identifier.
- setIdentifier(URI) - Method in class org.apache.taverna.scufl2.api.common.AbstractRevisioned
-
Set the identifier.
- setIgnoreBlankRows(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
-
Sets the value of the ignoreBlankRows property.
- setIncludeStdErr(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Sets the value of the includeStdErr property.
- setIncludeStdIn(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Sets the value of the includeStdIn property.
- setIncludeStdOut(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Sets the value of the includeStdOut property.
- setIndex(Integer) - Method in class org.apache.taverna.baclava.DataElementType
-
Sets the value of the index property.
- setIndex(Integer) - Method in class org.apache.taverna.baclava.PartialOrderType
-
Sets the value of the index property.
- setInfoWarnings(ArrayList<String>) - Method in class org.apache.taverna.robundle.validator.ValidationReport
-
- setInitialDelay(long) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RetryConfig
-
Sets the value of the initialDelay property.
- setInitialisationVector(byte[]) - Method in class org.apache.taverna.robundle.xml.odf.manifest.Algorithm
-
Sets the value of the initialisationVector property.
- setInitializationVector(String) - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.Algorithm
-
- setInput(NodeType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.LinkType
-
Sets the value of the input property.
- setInput(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MergemodeType
-
Sets the value of the input property.
- setInputActivityPort(InputActivityPort) - Method in class org.apache.taverna.scufl2.xml.Activity.InputActivityPort
-
Sets the value of the inputActivityPort property.
- setInputMap(Map) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Activity
-
Sets the value of the inputMap property.
- setInputPortBinding(InputPortBinding) - Method in class org.apache.taverna.scufl2.xml.ProcessorBinding.InputPortBinding
-
Sets the value of the inputPortBinding property.
- setInputPortBindings(Set<ProcessorInputPortBinding>) - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorBinding
-
Sets the bindings for individual input ports of the bound
Processor.
- setInputPorts(Set<InputActivityPort>) - Method in class org.apache.taverna.scufl2.api.activity.Activity
-
Set the InputActivityPorts to be the contents of the
specified set.
- setInputPorts(Set<InputProcessorPort>) - Method in class org.apache.taverna.scufl2.api.core.Processor
-
Sets the input ports.
- setInputPorts(Set<InputWorkflowPort>) - Method in class org.apache.taverna.scufl2.api.core.Workflow
-
Set the InputWorkflowPorts to be the contents of the
specified set.
- setInputPorts(AnnotatedGranularDepthPorts) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Dataflow
-
Sets the value of the inputPorts property.
- setInputPorts(DepthPorts) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Processor
-
Sets the value of the inputPorts property.
- setInputProcessorPort(InputProcessorPort) - Method in class org.apache.taverna.scufl2.api.iterationstrategy.PortNode
-
- setInputProcessorPort(InputProcessorPort) - Method in class org.apache.taverna.scufl2.xml.Processor.InputProcessorPort
-
Sets the value of the inputProcessorPort property.
- setInputs(ActivityInputPorts) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Sets the value of the inputs property.
- setInputs(ActivityInputPorts) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
-
Sets the value of the inputs property.
- setInputs(ActivityInputPorts) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.InteractionConfig
-
Sets the value of the inputs property.
- setInputs(ActivityInputPorts) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
-
Sets the value of the inputs property.
- setInputs(EntryMap) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Sets the value of the inputs property.
- setInputs(ActivityInputPorts) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.XMLSplitterConfig
-
Sets the value of the inputs property.
- setInputSymanticTypes(RShellSymanticType) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
-
Sets the value of the inputSymanticTypes property.
- setInputWorkflowPort(InputWorkflowPort) - Method in class org.apache.taverna.scufl2.xml.Workflow.InputWorkflowPort
-
Sets the value of the inputWorkflowPort property.
- setInteractionActivityType(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.InteractionConfig
-
Sets the value of the interactionActivityType property.
- setInterval(BigInteger) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.SoaplabwsdlType
-
Sets the value of the interval property.
- setInvocationGroupName(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Group
-
Sets the value of the invocationGroupName property.
- setIsMethodConstructor(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Sets the value of the isMethodConstructor property.
- setIsMethodStatic(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Sets the value of the isMethodStatic property.
- setItemList(ItemListType) - Method in class org.apache.taverna.baclava.PartialOrderType
-
Sets the value of the itemList property.
- setIterateOverInputPort(Resource) - Method in class org.apache.taverna.scufl2.xml.PortNode
-
Sets the value of the iterateOverInputPort property.
- setIteration(Iteration) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.IterationStrategyStack
-
Sets the value of the iteration property.
- setIterationCount(BigInteger) - Method in class org.apache.taverna.robundle.xml.odf.manifest.KeyDerivation
-
Sets the value of the iterationCount property.
- setIterationCount(int) - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.KeyDerivation
-
- setIterationStrategies(IterationStrategyStack.IterationStrategies) - Method in class org.apache.taverna.scufl2.xml.IterationStrategyStack
-
Sets the value of the iterationStrategies property.
- setIterationstrategy(IterationstrategyType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ProcessorType
-
Sets the value of the iterationstrategy property.
- setIterationStrategyStack(IterationStrategyStack) - Method in class org.apache.taverna.scufl2.api.core.Processor
-
Sets the IterationStrategyStack.
- setIterationStrategyStack(IterationStrategyStack) - Method in class org.apache.taverna.scufl2.xml.Processor.IterationStrategyStack
-
Sets the value of the iterationStrategyStack property.
- setIterationStrategyStack(Processor.IterationStrategyStack) - Method in class org.apache.taverna.scufl2.xml.Processor
-
Sets the value of the iterationStrategyStack property.
- setIterationStrategyStack(IterationStrategyStack) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Processor
-
Sets the value of the iterationStrategyStack property.
- setIterator(IteratorType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.CrossType
-
Sets the value of the iterator property.
- setIterator(IteratorType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.DotType
-
Sets the value of the iterator property.
- setIterator(IteratorType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.IterationstrategyType
-
Sets the value of the iterator property.
- setJ(byte[]) - Method in class org.apache.taverna.robundle.xml.dsig.DSAKeyValueType
-
Sets the value of the j property.
- setJavaClass(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ActivityInputs.Entry
-
Sets the value of the javaClass property.
- setJaxbContext(JAXBContext) - Method in class org.apache.taverna.scufl2.rdfxml.RDFXMLSerializer
-
- setJson(JsonNode) - Method in class org.apache.taverna.scufl2.api.configurations.Configuration
-
Set the underlying JSON JsonNode which contains the properties
set by this configuration.
- setJson(String) - Method in class org.apache.taverna.scufl2.api.configurations.Configuration
-
- setJsonSchema(JsonNode) - Method in class org.apache.taverna.scufl2.api.configurations.Configuration
-
- setJsonSchema(String) - Method in class org.apache.taverna.scufl2.api.configurations.Configuration
-
- setKeepSessionAlive(Boolean) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellType
-
Sets the value of the keepSessionAlive property.
- setKeepSessionAlive(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
-
Sets the value of the keepSessionAlive property.
- setKey(String) - Method in class org.apache.taverna.baclava.DataThingType
-
Sets the value of the key property.
- setKey(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MapType
-
Sets the value of the key property.
- setKeyDerivation(KeyDerivation) - Method in class org.apache.taverna.robundle.xml.odf.manifest.EncryptionData
-
Sets the value of the keyDerivation property.
- setKeyDerivation(KeyDerivation) - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.EncryptionData
-
- setKeyDerivationName(String) - Method in class org.apache.taverna.robundle.xml.odf.manifest.KeyDerivation
-
Sets the value of the keyDerivationName property.
- setKeyInfo(KeyInfoType) - Method in class org.apache.taverna.robundle.xml.dsig.SignatureType
-
Sets the value of the keyInfo property.
- setKeyInfo(KeyInfoType) - Method in class org.apache.taverna.robundle.xml.xenc.EncryptedType
-
Sets the value of the keyInfo property.
- setKeySize(BigInteger) - Method in class org.apache.taverna.robundle.xml.odf.manifest.KeyDerivation
-
Sets the value of the keySize property.
- setKeySize(BigInteger) - Method in class org.apache.taverna.robundle.xml.odf.manifest.StartKeyGeneration
-
Sets the value of the keySize property.
- setLastPredictedDepth(BigInteger) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.LastPredictedDepthPort
-
Sets the value of the lastPredictedDepth property.
- setList(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
-
Sets the value of the list property.
- setLocalDependencies(LocalDependencies) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Sets the value of the localDependencies property.
- setLocalDependencies(LocalDependencies) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
-
Sets the value of the localDependencies property.
- setLocalworkerName(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
-
Sets the value of the localworkerName property.
- setLocation(String) - Method in class org.apache.taverna.robundle.xml.combine.Content
-
Sets the value of the location property.
- setLocation(URI) - Method in class org.apache.taverna.scufl2.rdfxml.ParserState
-
- setLocation(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMartConfig.MartService
-
Sets the value of the location property.
- setLog(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ProcessorType
-
Sets the value of the log property.
- setLog(BigInteger) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ScuflType
-
Sets the value of the log property.
- setLsid(String) - Method in class org.apache.taverna.baclava.DataElementType
-
Sets the value of the lsid property.
- setLsid(String) - Method in class org.apache.taverna.baclava.MyGridDataDocumentType
-
Sets the value of the lsid property.
- setLsid(String) - Method in class org.apache.taverna.baclava.PartialOrderType
-
Sets the value of the lsid property.
- setLsid(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.WorkflowDescriptionType
-
Sets the value of the lsid property.
- setMainProfile(Profile) - Method in class org.apache.taverna.scufl2.api.container.WorkflowBundle
-
- setMainProfile(Resource) - Method in class org.apache.taverna.scufl2.xml.WorkflowBundle
-
Sets the value of the mainProfile property.
- setMainWorkflow(Workflow) - Method in class org.apache.taverna.scufl2.api.container.WorkflowBundle
-
- setMainWorkflow(Resource) - Method in class org.apache.taverna.scufl2.xml.WorkflowBundle
-
Sets the value of the mainWorkflow property.
- setManifest(List<Path>) - Method in class org.apache.taverna.robundle.manifest.Manifest
-
- setMartDataset(Object) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMartConfig
-
Sets the value of the martDataset property.
- setMartService(BioMartConfig.MartService) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMartConfig
-
Sets the value of the martService property.
- setMaster(Boolean) - Method in class org.apache.taverna.robundle.xml.combine.Content
-
Sets the value of the master property.
- setMaxDelay(long) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RetryConfig
-
Sets the value of the maxDelay property.
- setMaxinterval(BigInteger) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.SoaplabwsdlType
-
Sets the value of the maxinterval property.
- setMaxJobs(BigInteger) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ParallelizeConfig
-
Sets the value of the maxJobs property.
- setMaxretries(BigInteger) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
-
Sets the value of the maxretries property.
- setMaxretries(BigInteger) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.LocalType
-
Sets the value of the maxretries property.
- setMaxRetries(BigInteger) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RetryConfig
-
Sets the value of the maxRetries property.
- setMechanismName(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
-
Sets the value of the mechanismName property.
- setMechanismName(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Group
-
Sets the value of the mechanismName property.
- setMechanismType(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
-
Sets the value of the mechanismType property.
- setMechanismType(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Group
-
Sets the value of the mechanismType property.
- setMechanismXML(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
-
Sets the value of the mechanismXML property.
- setMechanismXML(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Group
-
Sets the value of the mechanismXML property.
- setMediatype(String) - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
- setMediaType(String) - Method in class org.apache.taverna.robundle.xml.odf.container.RootFile
-
Sets the value of the mediaType property.
- setMediaType(String) - Method in class org.apache.taverna.robundle.xml.odf.manifest.FileEntry
-
Sets the value of the mediaType property.
- setMediaType(String) - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.OdfFileEntry
-
- setMediaType(String) - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
-
Set the media type of the ODF package (equal to media type of ODF root
document)
- setMergePosition(Integer) - Method in class org.apache.taverna.scufl2.api.core.DataLink
-
Sets the position that this DataLink should join a merge.
- setMergePosition(DataLink.MergePosition) - Method in class org.apache.taverna.scufl2.xml.DataLink
-
Sets the value of the mergePosition property.
- setMessage(String) - Method in class org.apache.taverna.databundle.ErrorDocument
-
- setMetadata(MetadataType) - Method in class org.apache.taverna.baclava.MyGridDataDocumentType
-
Sets the value of the metadata property.
- setMetadata(MetadataType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.SinkType
-
Sets the value of the metadata property.
- setMetadata(MetadataType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.SourceType
-
Sets the value of the metadata property.
- setMethod(MethodType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
-
Sets the value of the method property.
- setMethodName(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Sets the value of the methodName property.
- setMime(Object) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
-
Sets the value of the mime property.
- setMime(Object) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptOutput
-
Sets the value of the mime property.
- setMimeType(Bundle, String) - Static method in class org.apache.taverna.robundle.Bundles
-
- setMimeType(String) - Method in class org.apache.taverna.robundle.xml.dsig.ObjectType
-
Sets the value of the mimeType property.
- setMimeType(String) - Method in class org.apache.taverna.robundle.xml.xenc.EncryptedType
-
Sets the value of the mimeType property.
- setMimeType(MimeTypeType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MimeTypes
-
Sets the value of the mimeType property.
- setMimeTypes(MimeTypesType) - Method in class org.apache.taverna.baclava.MetadataType
-
Sets the value of the mimeTypes property.
- setMimeTypes(MimeTypes) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MetadataType
-
Sets the value of the mimeTypes property.
- setMobyEndpoint(MobyEndpointType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobyobjectType
-
Sets the value of the mobyEndpoint property.
- setMobyEndpoint(MobyEndpointType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobywsdlType
-
Sets the value of the mobyEndpoint property.
- setMobyEndpoint(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyObjectConfig
-
Sets the value of the mobyEndpoint property.
- setMode(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MergemodeType
-
Sets the value of the mode property.
- setMode(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.SinkType
-
Sets the value of the mode property.
- setModification(Change) - Method in class org.apache.taverna.scufl2.xml.roevo.ChangeSpecification.HasChange
-
Sets the value of the modification property.
- setModificationsOf(Set<URI>) - Method in class org.apache.taverna.scufl2.api.annotation.Revision
-
- setModulus(byte[]) - Method in class org.apache.taverna.robundle.xml.dsig.RSAKeyValueType
-
Sets the value of the modulus property.
- setMyGridDataDocument(MyGridDataDocumentType) - Method in class org.apache.taverna.baclava.DataThingType
-
Sets the value of the myGridDataDocument property.
- setName(String) - Method in class org.apache.taverna.robundle.manifest.Agent
-
- setName(String) - Method in class org.apache.taverna.scufl2.api.common.AbstractNamed
-
- setName(String) - Method in interface org.apache.taverna.scufl2.api.common.Named
-
- setName(String) - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.Algorithm
-
- setName(String) - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.KeyDerivation
-
- setName(String) - Method in class org.apache.taverna.scufl2.xml.Activity
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.Configuration
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.InputActivityPort
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.InputProcessorPort
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.InputWorkflowPort
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.OutputActivityPort
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.OutputProcessorPort
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.OutputWorkflowPort
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.Processor
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.ProcessorBinding
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.Profile
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ApiConsumerParameterType
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BasetypeType
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobyParameterType
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ClassType
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.CoordinationType
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.DefaultType
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.IteratorType
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MethodType
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ProcessorType
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.SinkType
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.SourceType
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.TemplatePortReferenceType
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Dataflow
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Port
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.PortProduct
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Processor
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Property
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.Workflow
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.taverna.scufl2.xml.WorkflowBundle
-
Sets the value of the name property.
- setNetSfTavernaT2AnnotationAnnotationAssertionImpl(AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl
-
Sets the value of the netSfTavernaT2AnnotationAnnotationAssertionImpl property.
- setNetSfTavernaT2AnnotationAnnotationChainImpl(AnnotationChain.NetSfTavernaT2AnnotationAnnotationChainImpl) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.AnnotationChain
-
Sets the value of the netSfTavernaT2AnnotationAnnotationChainImpl property.
- setNewRVersion(Boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
-
Sets the value of the newRVersion property.
- setOperation(OperationType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
-
Sets the value of the operation property.
- setOperation(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.WSDLConfig
-
Sets the value of the operation property.
- setOptional(Boolean) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
-
Sets the value of the optional property.
- setOptional(Boolean) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BasetypeType
-
Sets the value of the optional property.
- setOptional(Boolean) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
-
Sets the value of the optional property.
- setOrcid(URI) - Method in class org.apache.taverna.robundle.manifest.Agent
-
- setOtherHTTPHeaders(HTTPHeaders) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
Sets the value of the otherHTTPHeaders property.
- setOutgoingDataFormat(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
Sets the value of the outgoingDataFormat property.
- setOutput(NodeType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.LinkType
-
Sets the value of the output property.
- setOutputActivityPort(OutputActivityPort) - Method in class org.apache.taverna.scufl2.xml.Activity.OutputActivityPort
-
Sets the value of the outputActivityPort property.
- setOutputFormat(OutputFormat) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
-
Sets the value of the outputFormat property.
- setOutputMap(Map) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Activity
-
Sets the value of the outputMap property.
- setOutputPortBinding(OutputPortBinding) - Method in class org.apache.taverna.scufl2.xml.ProcessorBinding.OutputPortBinding
-
Sets the value of the outputPortBinding property.
- setOutputPortBindings(Set<ProcessorOutputPortBinding>) - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorBinding
-
Sets the bindings for individual output ports of the bound
Processor.
- setOutputPorts(Set<OutputActivityPort>) - Method in class org.apache.taverna.scufl2.api.activity.Activity
-
Set the OutputActivityPorts to be the contents of the
specified set.
- setOutputPorts(Set<OutputProcessorPort>) - Method in class org.apache.taverna.scufl2.api.core.Processor
-
Sets the output ports.
- setOutputPorts(Set<OutputWorkflowPort>) - Method in class org.apache.taverna.scufl2.api.core.Workflow
-
Set the OutputWorkflowPorts to be the contents of the
specified set.
- setOutputPorts(AnnotatedPorts) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Dataflow
-
Sets the value of the outputPorts property.
- setOutputPorts(GranularDepthPorts) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Processor
-
Sets the value of the outputPorts property.
- setOutputProcessorPort(OutputProcessorPort) - Method in class org.apache.taverna.scufl2.xml.Processor.OutputProcessorPort
-
Sets the value of the outputProcessorPort property.
- setOutputs(ActivityOutputPorts) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Sets the value of the outputs property.
- setOutputs(ActivityOutputPorts) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
-
Sets the value of the outputs property.
- setOutputs(ActivityOutputPorts) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.InteractionConfig
-
Sets the value of the outputs property.
- setOutputs(ActivityOutputPorts) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
-
Sets the value of the outputs property.
- setOutputs(EntryMap) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Sets the value of the outputs property.
- setOutputs(ActivityOutputPorts) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.XMLSplitterConfig
-
Sets the value of the outputs property.
- setOutputSymanticTypes(RShellSymanticType) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
-
Sets the value of the outputSymanticTypes property.
- setOutputWorkflowPort(OutputWorkflowPort) - Method in class org.apache.taverna.scufl2.xml.Workflow.OutputWorkflowPort
-
Sets the value of the outputWorkflowPort property.
- setP(byte[]) - Method in class org.apache.taverna.robundle.xml.dsig.DSAKeyValueType
-
Sets the value of the p property.
- setPackageMediaType(String) - Method in class org.apache.taverna.scufl2.ucfpackage.UCFPackage
-
- setParameterDimensions(ApiConsumerParameterDimensions) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Sets the value of the parameterDimensions property.
- setParameterNames(ApiConsumerParameterNames) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Sets the value of the parameterNames property.
- setParameterTypes(ApiConsumerParameterTypes) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Sets the value of the parameterTypes property.
- setParent(int) - Method in class org.apache.taverna.baclava.RelationType
-
Sets the value of the parent property.
- setParent(Profile) - Method in class org.apache.taverna.scufl2.api.activity.Activity
-
- setParent(WorkflowBundle) - Method in class org.apache.taverna.scufl2.api.annotation.Annotation
-
- setParent(T) - Method in interface org.apache.taverna.scufl2.api.common.Child
-
Sets the parent of this workflow bean.
- setParent(Profile) - Method in class org.apache.taverna.scufl2.api.configurations.Configuration
-
- setParent(Workflow) - Method in class org.apache.taverna.scufl2.api.core.BlockingControlLink
-
- setParent(Workflow) - Method in class org.apache.taverna.scufl2.api.core.DataLink
-
- setParent(Workflow) - Method in class org.apache.taverna.scufl2.api.core.Processor
-
- setParent(WorkflowBundle) - Method in class org.apache.taverna.scufl2.api.core.Workflow
-
- setParent(IterationStrategyParent) - Method in class org.apache.taverna.scufl2.api.iterationstrategy.CrossProduct
-
- setParent(IterationStrategyParent) - Method in class org.apache.taverna.scufl2.api.iterationstrategy.DotProduct
-
- setParent(Processor) - Method in class org.apache.taverna.scufl2.api.iterationstrategy.IterationStrategyStack
-
- setParent(IterationStrategyParent) - Method in class org.apache.taverna.scufl2.api.iterationstrategy.PortNode
-
- setParent(Activity) - Method in class org.apache.taverna.scufl2.api.port.InputActivityPort
-
- setParent(Processor) - Method in class org.apache.taverna.scufl2.api.port.InputProcessorPort
-
- setParent(Workflow) - Method in class org.apache.taverna.scufl2.api.port.InputWorkflowPort
-
- setParent(Activity) - Method in class org.apache.taverna.scufl2.api.port.OutputActivityPort
-
- setParent(Processor) - Method in class org.apache.taverna.scufl2.api.port.OutputProcessorPort
-
- setParent(Workflow) - Method in class org.apache.taverna.scufl2.api.port.OutputWorkflowPort
-
- setParent(Profile) - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorBinding
-
- setParent(ProcessorBinding) - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorInputPortBinding
-
- setParent(ProcessorBinding) - Method in class org.apache.taverna.scufl2.api.profiles.ProcessorOutputPortBinding
-
- setParent(WorkflowBundle) - Method in class org.apache.taverna.scufl2.api.profiles.Profile
-
- setParents(WorkflowBundle) - Method in class org.apache.taverna.scufl2.api.common.Scufl2Tools
-
- setParser(ScuflParser) - Method in class org.apache.taverna.scufl2.translator.scufl.ScuflReader
-
- setParser(T2FlowParser) - Method in class org.apache.taverna.scufl2.translator.t2flow.T2FlowReader
-
- setParserState(ParserState) - Method in class org.apache.taverna.scufl2.translator.scufl.processorelement.AbstractExtensionParser
-
- setParserState(ParserState) - Method in interface org.apache.taverna.scufl2.translator.scufl.ScuflExtensionParser
-
- setParseType(String) - Method in class org.apache.taverna.scufl2.xml.DispatchStack.DispatchStackLayers
-
Sets the value of the parseType property.
- setParseType(String) - Method in class org.apache.taverna.scufl2.xml.IterationStrategyStack.IterationStrategies
-
Sets the value of the parseType property.
- setParseType(String) - Method in class org.apache.taverna.scufl2.xml.ProductOf
-
Sets the value of the parseType property.
- setPartialOrder(PartialOrderType) - Method in class org.apache.taverna.baclava.MyGridDataDocumentType
-
Sets the value of the partialOrder property.
- setPassword(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellType
-
Sets the value of the password property.
- setPassword(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
-
Sets the value of the password property.
- setPath(String) - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.OdfFileEntry
-
- setPath(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptOutput
-
Sets the value of the path property.
- setPgenCounter(byte[]) - Method in class org.apache.taverna.robundle.xml.dsig.DSAKeyValueType
-
Sets the value of the pgenCounter property.
- setPollingBackoff(double) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SoaplabConfig
-
Sets the value of the pollingBackoff property.
- setPollingInterval(BigInteger) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SoaplabConfig
-
Sets the value of the pollingInterval property.
- setPollingIntervalMax(BigInteger) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SoaplabConfig
-
Sets the value of the pollingIntervalMax property.
- setPort(PortType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.InfernoType
-
Sets the value of the port property.
- setPort(BigInteger) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellType
-
Sets the value of the port property.
- setPort(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Link
-
Sets the value of the port property.
- setPort(int) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
-
Sets the value of the port property.
- setPortDepth(PortDepth) - Method in class org.apache.taverna.scufl2.xml.InputActivityPort
-
Sets the value of the portDepth property.
- setPortDepth(PortDepth) - Method in class org.apache.taverna.scufl2.xml.InputProcessorPort
-
Sets the value of the portDepth property.
- setPortDepth(PortDepth) - Method in class org.apache.taverna.scufl2.xml.InputWorkflowPort
-
Sets the value of the portDepth property.
- setPortDepth(PortDepth) - Method in class org.apache.taverna.scufl2.xml.OutputActivityPort
-
Sets the value of the portDepth property.
- setPortDepth(PortDepth) - Method in class org.apache.taverna.scufl2.xml.OutputProcessorPort
-
Sets the value of the portDepth property.
- setPortResolvedDepth(Port, Integer) - Method in class org.apache.taverna.scufl2.validation.structural.ValidatorState
-
- setPreferredViewMode(String) - Method in class org.apache.taverna.robundle.xml.odf.manifest.FileEntry
-
Sets the value of the preferredViewMode property.
- setPrefixMapper(Marshaller) - Static method in class org.apache.taverna.robundle.manifest.combine.CombineManifest
-
- setPrefixMapper(Marshaller) - Static method in class org.apache.taverna.robundle.manifest.odf.ODFJaxb
-
- setPrefixMapper(Marshaller) - Method in class org.apache.taverna.scufl2.rdfxml.RDFXMLSerializer
-
- setPreparingTimeoutInSeconds(int) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Sets the value of the preparingTimeoutInSeconds property.
- setPresentationOrigin(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.InteractionConfig
-
Sets the value of the presentationOrigin property.
- setPreviousDispatchLayerName(String) - Method in class org.apache.taverna.scufl2.translator.t2flow.ParserState
-
- setPreviousRevision(Revision) - Method in class org.apache.taverna.scufl2.api.annotation.Revision
-
- setProcessor(Processor) - Method in class org.apache.taverna.scufl2.validation.structural.ValidatorState
-
- setProcessor(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Link
-
Sets the value of the processor property.
- setProcessor(Processor) - Method in class org.apache.taverna.scufl2.xml.Workflow.Processor
-
Sets the value of the processor property.
- setProcessorBindings(Set<ProcessorBinding>) - Method in class org.apache.taverna.scufl2.api.profiles.Profile
-
Sets the bindings for individual Processors.
- setProcessorElement(JAXBElement<?>) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ProcessorType
-
Sets the value of the processorElement property.
- setProcessors(Set<Processor>) - Method in class org.apache.taverna.scufl2.api.core.Workflow
-
Set the Processors to be the contents of the specified set.
- setProcessors(Processors) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Dataflow
-
Sets the value of the processors property.
- setProducedBy(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Workflow
-
Sets the value of the producedBy property.
- setProductOf(ProductOf) - Method in class org.apache.taverna.scufl2.xml.CrossProduct
-
Sets the value of the productOf property.
- setProductOf(ProductOf) - Method in class org.apache.taverna.scufl2.xml.DotProduct
-
Sets the value of the productOf property.
- setProfile(SeeAlsoType) - Method in class org.apache.taverna.scufl2.xml.WorkflowBundle.Profile
-
Sets the value of the profile property.
- setProfilePosition(Integer) - Method in class org.apache.taverna.scufl2.api.profiles.Profile
-
- setProfiles(Set<Profile>) - Method in class org.apache.taverna.scufl2.api.container.WorkflowBundle
-
- setProgressNotification(Boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.InteractionConfig
-
Sets the value of the progressNotification property.
- setProperties(Properties) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.LoopConfig
-
Sets the value of the properties property.
- setProxy() - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
Deprecated.
- setProxy(URI) - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
Deprecated.
- setQ(byte[]) - Method in class org.apache.taverna.robundle.xml.dsig.DSAKeyValueType
-
Sets the value of the q property.
- setQname(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
-
Sets the value of the qname property.
- setQname(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BasetypeType
-
Sets the value of the qname property.
- setQname(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
-
Sets the value of the qname property.
- setQuery(Object) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMartConfig
-
Sets the value of the query property.
- setQueueDeny(Object) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Sets the value of the queueDeny property.
- setQueuePreferred(Object) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Sets the value of the queuePreferred property.
- setRaven(Raven) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Activity
-
Sets the value of the raven property.
- setRaven(Raven) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.DispatchLayer
-
Sets the value of the raven property.
- setReaders(List<WorkflowBundleReader>) - Method in class org.apache.taverna.scufl2.api.io.WorkflowBundleIO
-
Sets the WorkflowBundleReaders.
- setReceiveFrom(Resource) - Method in class org.apache.taverna.scufl2.xml.DataLink
-
Sets the value of the receiveFrom property.
- setReceivesFrom(SenderPort) - Method in class org.apache.taverna.scufl2.api.core.DataLink
-
Returns the SenderPort that this DataLink
receives data from.
- setRecipient(String) - Method in class org.apache.taverna.robundle.xml.xenc.EncryptedKeyType
-
Sets the value of the recipient property.
- setRef(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.DataflowConfig
-
Sets the value of the ref property.
- setReference(Path, URI) - Static method in class org.apache.taverna.databundle.DataBundles
-
- setReference(Path, URI) - Static method in class org.apache.taverna.robundle.Bundles
-
- setReference(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean.SymanticType
-
Sets the value of the reference property.
- setReferenceList(ReferenceList) - Method in class org.apache.taverna.robundle.xml.xenc.EncryptedKeyType
-
Sets the value of the referenceList property.
- setRegistryBase(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ComponentConfig
-
Sets the value of the registryBase property.
- setRegistryEndpoint(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyParserConfig
-
Sets the value of the registryEndpoint property.
- setRelationList(RelationListType) - Method in class org.apache.taverna.baclava.PartialOrderType
-
Sets the value of the relationList property.
- setRelationships(Container.Relationships) - Method in class org.apache.taverna.robundle.xml.odf.container.Container
-
Sets the value of the relationships property.
- setRemoval(Change) - Method in class org.apache.taverna.scufl2.xml.roevo.ChangeSpecification.HasChange
-
Sets the value of the removal property.
- setRemovalOf(Set<URI>) - Method in class org.apache.taverna.scufl2.api.annotation.Revision
-
- setRepositories(RepositoriesType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
-
Sets the value of the repositories property.
- setRepositories(RepositoriesType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BeanshellType
-
Sets the value of the repositories property.
- setRepositoryUrl(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
-
Sets the value of the repositoryUrl property.
- setRepositoryUrl(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseConfig
-
Sets the value of the repositoryUrl property.
- setREs(Object) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Sets the value of the rEs property.
- setResource(String) - Method in class org.apache.taverna.scufl2.xml.ConfigurationType
-
Sets the value of the resource property.
- setResource(String) - Method in class org.apache.taverna.scufl2.xml.rdf.Resource
-
Sets the value of the resource property.
- setResource(String) - Method in class org.apache.taverna.scufl2.xml.rdf.Type
-
Sets the value of the resource property.
- setResource(String) - Method in class org.apache.taverna.scufl2.xml.rdfs.Domain
-
Sets the value of the resource property.
- setResource(String) - Method in class org.apache.taverna.scufl2.xml.rdfs.Range
-
Sets the value of the resource property.
- setResource(String) - Method in class org.apache.taverna.scufl2.xml.rdfs.SeeAlso
-
Sets the value of the resource property.
- setResource(String) - Method in class org.apache.taverna.scufl2.xml.rdfs.SubClassOf
-
Sets the value of the resource property.
- setResource(String) - Method in class org.apache.taverna.scufl2.xml.rdfs.SubPropertyOf
-
Sets the value of the resource property.
- setResources(UCFPackage) - Method in class org.apache.taverna.scufl2.api.container.WorkflowBundle
-
- setRetrybackoff(Double) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
-
Sets the value of the retrybackoff property.
- setRetrybackoff(Double) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.LocalType
-
Sets the value of the retrybackoff property.
- setRetrydelay(BigInteger) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
-
Sets the value of the retrydelay property.
- setRetrydelay(BigInteger) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.LocalType
-
Sets the value of the retrydelay property.
- setReturnDimension(BigInteger) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Sets the value of the returnDimension property.
- setReturnType(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
-
Sets the value of the returnType property.
- setRole(Role) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Dataflow
-
Sets the value of the role property.
- setRootFile(String) - Method in class org.apache.taverna.scufl2.ucfpackage.UCFPackage
-
- setRootFile(String, String) - Method in class org.apache.taverna.scufl2.ucfpackage.UCFPackage
-
- setRowRange(SpreadsheetRange) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
-
Sets the value of the rowRange property.
- setRunFirst(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.LoopConfig
-
Sets the value of the runFirst property.
- setRVersion(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
-
Sets the value of the rVersion property.
- setSalt(byte[]) - Method in class org.apache.taverna.robundle.xml.odf.manifest.KeyDerivation
-
Sets the value of the salt property.
- setSalt(String) - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.KeyDerivation
-
- setScript(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
-
Sets the value of the script property.
- setScript(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
-
Sets the value of the script property.
- setScriptvalue(ScriptvalueType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BeanshellType
-
Sets the value of the scriptvalue property.
- setScufl2Tools(Scufl2Tools) - Method in class org.apache.taverna.scufl2.wfdesc.WfdescSerialiser
-
- setSecondaries(BioMobySecondaries) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyConfig
-
Sets the value of the secondaries property.
- setSecurityProfile(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.WSDLConfig
-
Sets the value of the securityProfile property.
- setSeeAlso(SeeAlso) - Method in class org.apache.taverna.scufl2.xml.Configuration
-
Sets the value of the seeAlso property.
- setSeeAlso(SeeAlso) - Method in class org.apache.taverna.scufl2.xml.SeeAlsoType
-
Sets the value of the seeAlso property.
- setSeeAlso(SeeAlso) - Method in class org.apache.taverna.scufl2.xml.Workflow
-
Sets the value of the seeAlso property.
- setSeed(byte[]) - Method in class org.apache.taverna.robundle.xml.dsig.DSAKeyValueType
-
Sets the value of the seed property.
- setSemanticType(SemanticTypeType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MetadataType
-
Sets the value of the semanticType property.
- setSendHTTPExpectRequestHeader(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
Sets the value of the sendHTTPExpectRequestHeader property.
- setSendsTo(ReceiverPort) - Method in class org.apache.taverna.scufl2.api.core.DataLink
-
Sets the ReceiverPort that this DataLink sends
data to.
- setSendTo(Resource) - Method in class org.apache.taverna.scufl2.xml.DataLink
-
Sets the value of the sendTo property.
- setSerializedAt(Calendar) - Method in class org.apache.taverna.scufl2.api.annotation.Annotation
-
- setSerializedBy(URI) - Method in class org.apache.taverna.scufl2.api.annotation.Annotation
-
- setService(ServiceType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.InfernoType
-
Sets the value of the service property.
- setServiceName(ServiceNameType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobyobjectType
-
Sets the value of the serviceName property.
- setServiceName(ServiceNameType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobywsdlType
-
Sets the value of the serviceName property.
- setServiceName(Object) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyObjectConfig
-
Sets the value of the serviceName property.
- setServiceType(BioMobyServiceType) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyConfig
-
Sets the value of the serviceType property.
- setShowActualUrlPort(Boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
Sets the value of the showActualUrlPort property.
- setShowRedirectionOutputPort(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
Sets the value of the showRedirectionOutputPort property.
- setShowResponseHeadersPort(Boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
Sets the value of the showResponseHeadersPort property.
- setSignatureMethod(SignatureMethodType) - Method in class org.apache.taverna.robundle.xml.dsig.SignedInfoType
-
Sets the value of the signatureMethod property.
- setSignatures(Container.Signatures) - Method in class org.apache.taverna.robundle.xml.odf.container.Container
-
Sets the value of the signatures property.
- setSignatureValue(SignatureValueType) - Method in class org.apache.taverna.robundle.xml.dsig.SignatureType
-
Sets the value of the signatureValue property.
- setSignedInfo(SignedInfoType) - Method in class org.apache.taverna.robundle.xml.dsig.SignatureType
-
Sets the value of the signedInfo property.
- setSink(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.LinkType
-
Sets the value of the sink property.
- setSink(Link) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.DataLink
-
Sets the value of the sink property.
- setSize(BigInteger) - Method in class org.apache.taverna.robundle.xml.odf.manifest.FileEntry
-
Sets the value of the size property.
- setSize(int) - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.OdfFileEntry
-
- setSlicelist(SlicelistType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ExtensionsType
-
Sets the value of the slicelist property.
- setSource(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.LinkType
-
Sets the value of the source property.
- setSource(Link) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.DataLink
-
Sets the value of the source property.
- setStack(Stack<WorkflowBean>) - Method in class org.apache.taverna.scufl2.rdfxml.ParserState
-
- setStart(BigInteger) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetRange
-
Sets the value of the start property.
- setStartKeyGeneration(StartKeyGeneration) - Method in class org.apache.taverna.robundle.xml.odf.manifest.EncryptionData
-
Sets the value of the startKeyGeneration property.
- setStartKeyGenerationName(String) - Method in class org.apache.taverna.robundle.xml.odf.manifest.StartKeyGeneration
-
Sets the value of the startKeyGenerationName property.
- setState(ConditionStateType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ConditionType
-
Sets the value of the state property.
- setStatechange(StatechangeType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ActionType
-
Sets the value of the statechange property.
- setStatic(Boolean) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MethodType
-
Sets the value of the static property.
- setStaticInputs(StaticInputs) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Sets the value of the staticInputs property.
- setStrict(boolean) - Method in class org.apache.taverna.scufl2.translator.scufl.ScuflParser
-
- setStrict(boolean) - Method in class org.apache.taverna.scufl2.translator.t2flow.T2FlowParser
-
- setString(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ActivityInputs.Entry
-
Sets the value of the string property.
- setString(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
-
Sets the value of the string property.
- setString(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Entry
-
Sets the value of the string property.
- setStringValue(Path, String) - Static method in class org.apache.taverna.databundle.DataBundles
-
- setStringValue(Path, String) - Static method in class org.apache.taverna.robundle.Bundles
-
- setSymanticType(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellInputPortType
-
Sets the value of the symanticType property.
- setSymanticType(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellOutputPortType
-
Sets the value of the symanticType property.
- setSymanticType(RShellSymanticType.RShellPortSymanticTypeBean.SymanticType) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean
-
Sets the value of the symanticType property.
- setSyntactictype(String) - Method in class org.apache.taverna.baclava.MyGridDataDocumentType
-
Sets the value of the syntactictype property.
- setSyntactictype(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BeanshellinputType
-
Sets the value of the syntactictype property.
- setSyntactictype(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BeanshelloutputType
-
Sets the value of the syntactictype property.
- setSyntacticType(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.InputPortType
-
Sets the value of the syntacticType property.
- setSyntacticType(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.OutputPortType
-
Sets the value of the syntacticType property.
- setSyntacticType(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellInputPortType
-
Sets the value of the syntacticType property.
- setSyntacticType(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellOutputPortType
-
Sets the value of the syntacticType property.
- setT2FlowParser(T2FlowParser) - Method in class org.apache.taverna.scufl2.translator.t2flow.ParserState
-
- setT2Parsers(Set<T2Parser>) - Method in class org.apache.taverna.scufl2.translator.t2flow.T2FlowParser
-
- setTag(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
-
Sets the value of the tag property.
- setTag(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
-
Sets the value of the tag property.
- setTags(Object) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Sets the value of the tags property.
- setTarget(String) - Method in class org.apache.taverna.robundle.xml.dsig.SignaturePropertyType
-
Sets the value of the target property.
- setTarget(String) - Method in class org.apache.taverna.robundle.xml.odf.container.Relationship
-
Sets the value of the target property.
- setTarget(String) - Method in class org.apache.taverna.robundle.xml.xenc.EncryptionPropertyType
-
Sets the value of the target property.
- setTarget(WorkflowBean) - Method in class org.apache.taverna.scufl2.api.annotation.Annotation
-
- setTarget(TargetType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ActionType
-
Sets the value of the target property.
- setTarget(TargetType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ConditionType
-
Sets the value of the target property.
- setTarget(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Condition
-
Sets the value of the target property.
- setTempFile(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
-
Sets the value of the tempFile property.
- setTempFile(boolean) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
-
Sets the value of the tempFile property.
- setTemplate(TemplateType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ProcessorType
-
Sets the value of the template property.
- setTestLocal(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Sets the value of the testLocal property.
- setTitle(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.WorkflowDescriptionType
-
Sets the value of the title property.
- setTo(StatusCodeType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.StatechangeType
-
Sets the value of the to property.
- setTo(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Mapping
-
Sets the value of the to property.
- setTrace(String) - Method in class org.apache.taverna.databundle.ErrorDocument
-
- setTransforms(TransformsType) - Method in class org.apache.taverna.robundle.xml.dsig.ReferenceType
-
Sets the value of the transforms property.
- setTransforms(TransformsType) - Method in class org.apache.taverna.robundle.xml.dsig.RetrievalMethodType
-
Sets the value of the transforms property.
- setTransforms(TransformsType) - Method in class org.apache.taverna.robundle.xml.xenc.CipherReferenceType
-
Sets the value of the transforms property.
- setType(String) - Method in class org.apache.taverna.baclava.PartialOrderType
-
Sets the value of the type property.
- setType(String) - Method in class org.apache.taverna.robundle.xml.dsig.ReferenceType
-
Sets the value of the type property.
- setType(String) - Method in class org.apache.taverna.robundle.xml.dsig.RetrievalMethodType
-
Sets the value of the type property.
- setType(String) - Method in class org.apache.taverna.robundle.xml.odf.container.Relationship
-
Sets the value of the type property.
- setType(String) - Method in class org.apache.taverna.robundle.xml.xenc.EncryptedType
-
Sets the value of the type property.
- setType(URI) - Method in class org.apache.taverna.scufl2.api.activity.Activity
-
Sets the type of the Activity.
- setType(URI) - Method in interface org.apache.taverna.scufl2.api.common.Typed
-
- setType(URI) - Method in class org.apache.taverna.scufl2.api.configurations.Configuration
-
Set the type of the Configuration.
- setType(URI) - Method in class org.apache.taverna.scufl2.api.core.Processor
-
- setType(Type) - Method in class org.apache.taverna.scufl2.xml.Activity
-
Sets the value of the type property.
- setType(Type) - Method in class org.apache.taverna.scufl2.xml.Configuration
-
Sets the value of the type property.
- setType(Type) - Method in class org.apache.taverna.scufl2.xml.DispatchStack
-
Sets the value of the type property.
- setType(Type) - Method in class org.apache.taverna.scufl2.xml.DispatchStackLayer
-
Sets the value of the type property.
- setType(Type) - Method in class org.apache.taverna.scufl2.xml.roevo.ChangeSpecification
-
Sets the value of the type property.
- setType(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ApiConsumerParameterType
-
Sets the value of the type property.
- setType(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MethodType
-
Sets the value of the type property.
- setType(LinkType) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Link
-
Sets the value of the type property.
- setTypename(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
-
Sets the value of the typename property.
- setTypename(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BasetypeType
-
Sets the value of the typename property.
- setTypename(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
-
Sets the value of the typename property.
- setUcfPackage(UCFPackage) - Method in class org.apache.taverna.scufl2.rdfxml.ParserState
-
- setUnbounded(Boolean) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
-
Sets the value of the unbounded property.
- setUnbounded(Boolean) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BasetypeType
-
Sets the value of the unbounded property.
- setUnbounded(Boolean) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
-
Sets the value of the unbounded property.
- setUntilFinished(Processor) - Method in class org.apache.taverna.scufl2.api.core.BlockingControlLink
-
Sets the Processor that controls the block.
- setUntilFinished(Resource) - Method in class org.apache.taverna.scufl2.xml.Blocking
-
Sets the value of the untilFinished property.
- setUri(URI) - Method in class org.apache.taverna.robundle.manifest.Agent
-
- setUri(URI) - Method in class org.apache.taverna.robundle.manifest.PathAnnotation
-
- setUri(URI) - Method in class org.apache.taverna.robundle.manifest.PathMetadata
-
- setURI() - Method in class org.apache.taverna.robundle.manifest.Proxy
-
- setURI(URI) - Method in class org.apache.taverna.robundle.manifest.Proxy
-
- setURI(String) - Method in class org.apache.taverna.robundle.xml.dsig.ReferenceType
-
Sets the value of the uri property.
- setURI(String) - Method in class org.apache.taverna.robundle.xml.dsig.RetrievalMethodType
-
Sets the value of the uri property.
- setURI(String) - Method in class org.apache.taverna.robundle.xml.xenc.CipherReferenceType
-
Sets the value of the uri property.
- setURI(String) - Method in class org.apache.taverna.robundle.xml.xenc.ReferenceType
-
Sets the value of the uri property.
- setUriToBean(Map<URI, WorkflowBean>) - Method in class org.apache.taverna.scufl2.rdfxml.ParserState
-
- setUriTools(URITools) - Static method in class org.apache.taverna.scufl2.rdfxml.RDFXMLWriter
-
- setUriTools(URITools) - Method in class org.apache.taverna.scufl2.translator.t2flow.defaultactivities.DataflowActivityParser
-
- setUriTools(URITools) - Method in class org.apache.taverna.scufl2.wfdesc.WfdescSerialiser
-
- setUrl(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
-
Sets the value of the url property.
- setUrlSignature(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
Sets the value of the urlSignature property.
- setUseCaseDescription(UsecaseDescription) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
-
Sets the value of the useCaseDescription property.
- setUsecaseid(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseConfig
-
Sets the value of the usecaseid property.
- setUsecaseid(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Sets the value of the usecaseid property.
- setUsername(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellType
-
Sets the value of the username property.
- setUsername(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
-
Sets the value of the username property.
- setUsingSchema(boolean) - Method in class org.apache.taverna.scufl2.rdfxml.RDFXMLSerializer
-
- setValidating(boolean) - Method in class org.apache.taverna.scufl2.translator.scufl.ScuflParser
-
- setValidating(boolean) - Method in class org.apache.taverna.scufl2.translator.t2flow.T2FlowParser
-
- setValidReturnCodes(ReturnCodes) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
Sets the value of the validReturnCodes property.
- setValue(byte[]) - Method in class org.apache.taverna.robundle.xml.dsig.SignatureValueType
-
Sets the value of the value property.
- setValue(int) - Method in class org.apache.taverna.scufl2.xml.DataLink.MergePosition
-
Sets the value of the value property.
- setValue(int) - Method in class org.apache.taverna.scufl2.xml.GranularPortDepth
-
Sets the value of the value property.
- setValue(int) - Method in class org.apache.taverna.scufl2.xml.PortDepth
-
Sets the value of the value property.
- setValue(int) - Method in class org.apache.taverna.scufl2.xml.PortNode.DesiredDepth
-
Sets the value of the value property.
- setValue(int) - Method in class org.apache.taverna.scufl2.xml.ProcessorBinding.ActivityPosition
-
Sets the value of the value property.
- setValue(XMLGregorianCalendar) - Method in class org.apache.taverna.scufl2.xml.prov.GeneratedAtTime
-
Sets the value of the value property.
- setValue(boolean) - Method in class org.apache.taverna.scufl2.xml.Required
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArticleNameType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.AuthorityNameType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BeanshellinputType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BeanshelloutputType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BiomobyParameterType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ConditionStateType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.DatatypeType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.DefaultType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.DescriptionType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.EndpointType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.HostType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.InputPortType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.JarfileType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MapType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MimeTypeType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.MobyEndpointType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.NodeType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.OperationType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.OutputPortType
-
Sets the value of the value property.
- setValue(BigInteger) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.PortType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RepositoryType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellInputPortType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellOutputPortType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ScriptvalueType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.SemanticTypeType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ServiceNameType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ServiceType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.SoaplabwsdlType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.StatusCodeType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.StringconstantType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.TargetType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.TemplateLiteralType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.WorkflowDescriptionType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.WsdlType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.DependencyElement
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Property
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean.SymanticType
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic.Content
-
Sets the value of the value property.
- setValue(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.StringConstantConfig
-
Sets the value of the value property.
- setVersion(String) - Method in class org.apache.taverna.robundle.xml.odf.container.Container
-
Sets the value of the version property.
- setVersion(String) - Method in class org.apache.taverna.robundle.xml.odf.manifest.FileEntry
-
Sets the value of the version property.
- setVersion(String) - Method in class org.apache.taverna.robundle.xml.odf.manifest.Manifest
-
Sets the value of the version property.
- setVersion(String) - Method in class org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.OdfFileEntry
-
- setVersion(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArtifactType
-
Sets the value of the version property.
- setVersion(String) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ScuflType
-
Sets the value of the version property.
- setVersion(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
-
Sets the value of the version property.
- setVersion(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Raven
-
Sets the value of the version property.
- setVersion(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Workflow
-
Sets the value of the version property.
- setWarnings(ArrayList<String>) - Method in class org.apache.taverna.robundle.validator.ValidationReport
-
- setWasAttributedTo(Set<URI>) - Method in class org.apache.taverna.scufl2.api.annotation.Revision
-
- setWasChangedBy(VersionableResource.WasChangedBy) - Method in class org.apache.taverna.scufl2.xml.roevo.VersionableResource
-
Sets the value of the wasChangedBy property.
- setWasRevisionOf(Resource) - Method in class org.apache.taverna.scufl2.xml.roevo.VersionableResource
-
Sets the value of the wasRevisionOf property.
- setWfBundle(WorkflowBundle) - Method in class org.apache.taverna.scufl2.rdfxml.RDFXMLSerializer
-
- setWfBundleIO(WorkflowBundleIO) - Static method in class org.apache.taverna.databundle.DataBundles
-
- setWorkers(BigInteger) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ProcessorType
-
Sets the value of the workers property.
- setWorkflow(Workflow) - Method in class org.apache.taverna.scufl2.validation.structural.ValidatorState
-
- setWorkflow(SeeAlsoType) - Method in class org.apache.taverna.scufl2.xml.WorkflowBundle.Workflow
-
Sets the value of the workflow property.
- setWorkflowBundle(Bundle, WorkflowBundle) - Static method in class org.apache.taverna.databundle.DataBundles
-
- setWorkflowBundle(WorkflowBundle) - Method in class org.apache.taverna.scufl2.validation.structural.ValidatorState
-
- setWorkflowdescription(WorkflowDescriptionType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ScuflType
-
Sets the value of the workflowdescription property.
- setWorkflowIdentifier(Resource) - Method in class org.apache.taverna.scufl2.xml.Workflow
-
Sets the value of the workflowIdentifier property.
- setWorkflowRunReport(Bundle, JsonNode) - Static method in class org.apache.taverna.databundle.DataBundles
-
- setWorkflows(Set<Workflow>) - Method in class org.apache.taverna.scufl2.api.container.WorkflowBundle
-
- setWrapped(Boolean) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
-
Sets the value of the wrapped property.
- setWrapped(Boolean) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.BasetypeType
-
Sets the value of the wrapped property.
- setWrapped(Boolean) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
-
Sets the value of the wrapped property.
- setWrappedTypeXML(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.XMLSplitterConfig
-
Sets the value of the wrappedTypeXML property.
- setWriters(List<WorkflowBundleWriter>) - Method in class org.apache.taverna.scufl2.api.io.WorkflowBundleIO
-
Sets the WorkflowBundleWriters.
- setWsdl(WsdlType) - Method in class org.apache.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
-
Sets the value of the wsdl property.
- setWsdl(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.WSDLConfig
-
Sets the value of the wsdl property.
- setX509IssuerName(String) - Method in class org.apache.taverna.robundle.xml.dsig.X509IssuerSerialType
-
Sets the value of the x509IssuerName property.
- setX509SerialNumber(BigInteger) - Method in class org.apache.taverna.robundle.xml.dsig.X509IssuerSerialType
-
Sets the value of the x509SerialNumber property.
- setXmlDocument(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.XPathConfig
-
Sets the value of the xmlDocument property.
- setXpathExpression(String) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.XPathConfig
-
Sets the value of the xpathExpression property.
- setXpathNamespaceMap(XPathNamespaceMap) - Method in class org.apache.taverna.scufl2.xml.t2flow.jaxb.XPathConfig
-
Sets the value of the xpathNamespaceMap property.
- setY(byte[]) - Method in class org.apache.taverna.robundle.xml.dsig.DSAKeyValueType
-
Sets the value of the y property.
- sha1 - Static variable in class org.apache.taverna.scufl2.wfdesc.ontologies.Foaf
-
A sha1sum hash, in hex.
- sharesDefinitionWith - Static variable in class org.apache.taverna.scufl2.wfdesc.ontologies.Prov_o
-
- show() - Method in class org.apache.taverna.tavlang.tools.inspect.ProcessorNames
-
- showActualUrlPort - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
- showProcessorNames(WorkflowBundle) - Method in class org.apache.taverna.examples.ProcessorNames
-
- showProcessorNames(WorkflowBundle) - Method in class org.apache.taverna.tavlang.tools.inspect.ProcessorNames
-
- showProcessorTree(WorkflowBundle) - Method in class org.apache.taverna.examples.ProcessorNames
-
- showProcessorTree(WorkflowBundle) - Method in class org.apache.taverna.tavlang.tools.inspect.ProcessorNames
-
- showRedirectionOutputPort - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
- showResponseHeadersPort - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
-
- signature - Variable in class org.apache.taverna.robundle.xml.odf.container.Container.Signatures
-
- signatureMethod - Variable in class org.apache.taverna.robundle.xml.dsig.SignedInfoType
-
- SignatureMethodType - Class in org.apache.taverna.robundle.xml.dsig
-
Java class for SignatureMethodType complex type.
- SignatureMethodType() - Constructor for class org.apache.taverna.robundle.xml.dsig.SignatureMethodType
-
- SignaturePropertiesType - Class in org.apache.taverna.robundle.xml.dsig
-
Java class for SignaturePropertiesType complex type.
- SignaturePropertiesType() - Constructor for class org.apache.taverna.robundle.xml.dsig.SignaturePropertiesType
-
- signatureProperty - Variable in class org.apache.taverna.robundle.xml.dsig.SignaturePropertiesType
-
- SignaturePropertyType - Class in org.apache.taverna.robundle.xml.dsig
-
Java class for SignaturePropertyType complex type.
- SignaturePropertyType() - Constructor for class org.apache.taverna.robundle.xml.dsig.SignaturePropertyType
-
- signatures - Variable in class org.apache.taverna.robundle.xml.odf.container.Container
-
- Signatures() - Constructor for class org.apache.taverna.robundle.xml.odf.container.Container.Signatures
-
- SignatureType - Class in org.apache.taverna.robundle.xml.dsig
-
Java class for SignatureType complex type.
- SignatureType() - Constructor for class org.apache.taverna.robundle.xml.dsig.SignatureType
-
- signatureValue - Variable in class org.apache.taverna.robundle.xml.dsig.SignatureType
-
- SignatureValueType - Class in org.apache.taverna.robundle.xml.dsig
-
Java class for SignatureValueType complex type.
- SignatureValueType() - Constructor for class org.apache.taverna.robundle.xml.dsig.SignatureValueType
-
- signedInfo - Variable in class org.apache.taverna.robundle.xml.dsig.SignatureType
-
- SignedInfoType - Class in org.apache.taverna.robundle.xml.dsig
-
Java class for SignedInfoType complex type.
- SignedInfoType() - Constructor for class org.apache.taverna.robundle.xml.dsig.SignedInfoType
-
- sink - Variable in class org.apache.taverna.scufl2.xml.scufl.jaxb.LinkType
-
- sink - Variable in class org.apache.taverna.scufl2.xml.scufl.jaxb.ScuflType
-
- sink - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.DataLink
-
- SinkType - Class in org.apache.taverna.scufl2.xml.scufl.jaxb
-
Java class for sinkType complex type.
- SinkType() - Constructor for class org.apache.taverna.scufl2.xml.scufl.jaxb.SinkType
-
- size() - Method in class org.apache.taverna.robundle.fs.BundleFileSystemProvider.BundleFileChannel
-
- size - Variable in class org.apache.taverna.robundle.xml.odf.manifest.FileEntry
-
- size() - Method in class org.apache.taverna.scufl2.api.common.NamedSet
-
- skeletonDataflow(Dataflow) - Method in class org.apache.taverna.scufl2.translator.t2flow.T2FlowParser
-
- skypeID - Static variable in class org.apache.taverna.scufl2.wfdesc.ontologies.Foaf
-
A Skype ID
- slicelist - Variable in class org.apache.taverna.scufl2.xml.scufl.jaxb.ExtensionsType
-
- SlicelistType - Class in org.apache.taverna.scufl2.xml.scufl.jaxb
-
Java class for slicelistType complex type.
- SlicelistType() - Constructor for class org.apache.taverna.scufl2.xml.scufl.jaxb.SlicelistType
-
- SoaplabActivityParser - Class in org.apache.taverna.scufl2.translator.t2flow.defaultactivities
-
- SoaplabActivityParser() - Constructor for class org.apache.taverna.scufl2.translator.t2flow.defaultactivities.SoaplabActivityParser
-
- SoaplabConfig - Class in org.apache.taverna.scufl2.xml.t2flow.jaxb
-
Configuration for the SoapLab activity.
- SoaplabConfig() - Constructor for class org.apache.taverna.scufl2.xml.t2flow.jaxb.SoaplabConfig
-
- SoaplabExtensionParser - Class in org.apache.taverna.scufl2.translator.scufl.processorelement
-
- SoaplabExtensionParser() - Constructor for class org.apache.taverna.scufl2.translator.scufl.processorelement.SoaplabExtensionParser
-
- SoaplabwsdlType - Class in org.apache.taverna.scufl2.xml.scufl.jaxb
-
Java class for soaplabwsdlType complex type.
- SoaplabwsdlType() - Constructor for class org.apache.taverna.scufl2.xml.scufl.jaxb.SoaplabwsdlType
-
- SOAPService - Static variable in class org.apache.taverna.scufl2.wfdesc.ontologies.Wf4ever
-
A SOAP service is typically described in a WSDL 1.1 or WSDL 2.0 TODO: Do we
need to distinguish between WSDL and SOAP? WSDL 1.1 and WSDL 2.0? RPC/Encoded
vs.Wrapped Document/Literal?
- SoftwareAgent - Static variable in class org.apache.taverna.scufl2.wfdesc.ontologies.Prov_o
-
- source - Variable in class org.apache.taverna.scufl2.xml.scufl.jaxb.LinkType
-
- source - Variable in class org.apache.taverna.scufl2.xml.scufl.jaxb.ScuflType
-
- source - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.DataLink
-
- SourceType - Class in org.apache.taverna.scufl2.xml.scufl.jaxb
-
Java class for sourceType complex type.
- SourceType() - Constructor for class org.apache.taverna.scufl2.xml.scufl.jaxb.SourceType
-
- sparql(String) - Method in class org.apache.taverna.scufl2.wfdesc.WfdescAgent
-
- specializationOf - Static variable in class org.apache.taverna.scufl2.wfdesc.ontologies.Prov_o
-
- SPKIDataType - Class in org.apache.taverna.robundle.xml.dsig
-
Java class for SPKIDataType complex type.
- SPKIDataType() - Constructor for class org.apache.taverna.robundle.xml.dsig.SPKIDataType
-
- spkiSexpAndAny - Variable in class org.apache.taverna.robundle.xml.dsig.SPKIDataType
-
- splitProcessors(Collection<Processor>, Processor) - Method in class org.apache.taverna.scufl2.api.common.Scufl2Tools
-
- SPLITTER - Static variable in class org.apache.taverna.scufl2.translator.t2flow.defaultactivities.WSDLXMLSplitterParser
-
- SpreadsheetActivityParser - Class in org.apache.taverna.scufl2.translator.t2flow.defaultactivities
-
- SpreadsheetActivityParser() - Constructor for class org.apache.taverna.scufl2.translator.t2flow.defaultactivities.SpreadsheetActivityParser
-
- SpreadsheetColumnNameEntry - Class in org.apache.taverna.scufl2.xml.t2flow.jaxb
-
Java class for SpreadsheetColumnNameEntry complex type.
- SpreadsheetColumnNameEntry() - Constructor for class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetColumnNameEntry
-
- SpreadsheetColumnNames - Class in org.apache.taverna.scufl2.xml.t2flow.jaxb
-
Java class for SpreadsheetColumnNames complex type.
- SpreadsheetColumnNames() - Constructor for class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetColumnNames
-
- SpreadsheetEmptyCellPolicy - Enum in org.apache.taverna.scufl2.xml.t2flow.jaxb
-
Java class for SpreadsheetEmptyCellPolicy.
- SpreadsheetExcludes - Class in org.apache.taverna.scufl2.xml.t2flow.jaxb
-
Java class for SpreadsheetExcludes complex type.
- SpreadsheetExcludes() - Constructor for class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetExcludes
-
- SpreadsheetImportConfig - Class in org.apache.taverna.scufl2.xml.t2flow.jaxb
-
Java class for SpreadsheetImportConfig complex type.
- SpreadsheetImportConfig() - Constructor for class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
-
- SpreadsheetRange - Class in org.apache.taverna.scufl2.xml.t2flow.jaxb
-
Java class for SpreadsheetRange complex type.
- SpreadsheetRange() - Constructor for class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetRange
-
- StandardWSDLSecurityProfile - Enum in org.apache.taverna.scufl2.xml.t2flow.jaxb
-
Java class for StandardWSDLSecurityProfile.
- Start - Static variable in class org.apache.taverna.scufl2.wfdesc.ontologies.Prov_o
-
An instance of prov:Start provides additional descriptions about the binary
prov:wasStartedBy relation from some started prov:Activity to an prov:Entity
that started it.
- start - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetRange
-
- startedAtTime - Static variable in class org.apache.taverna.scufl2.wfdesc.ontologies.Prov_o
-
The time at which an activity started.
- startKeyGeneration - Variable in class org.apache.taverna.robundle.xml.odf.manifest.EncryptionData
-
- StartKeyGeneration - Class in org.apache.taverna.robundle.xml.odf.manifest
-
Java class for anonymous complex type.
- StartKeyGeneration() - Constructor for class org.apache.taverna.robundle.xml.odf.manifest.StartKeyGeneration
-
- startKeyGenerationName - Variable in class org.apache.taverna.robundle.xml.odf.manifest.StartKeyGeneration
-
- startsWith(Path) - Method in class org.apache.taverna.robundle.fs.BundlePath
-
- startsWith(String) - Method in class org.apache.taverna.robundle.fs.BundlePath
-
- state - Variable in class org.apache.taverna.scufl2.xml.scufl.jaxb.ConditionType
-
- statechange - Variable in class org.apache.taverna.scufl2.xml.scufl.jaxb.ActionType
-
- StatechangeType - Class in org.apache.taverna.scufl2.xml.scufl.jaxb
-
Java class for statechangeType complex type.
- StatechangeType() - Constructor for class org.apache.taverna.scufl2.xml.scufl.jaxb.StatechangeType
-
- StaticInputs - Class in org.apache.taverna.scufl2.xml.t2flow.jaxb
-
Java class for StaticInputs complex type.
- StaticInputs() - Constructor for class org.apache.taverna.scufl2.xml.t2flow.jaxb.StaticInputs
-
- staticInputs - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
-
- Status - Enum in org.apache.taverna.scufl2.validation
-
- status - Static variable in class org.apache.taverna.scufl2.wfdesc.ontologies.Foaf
-
A string expressing what the user is happy for the general public (normally)
to know about their current activity.
- StatusCodeType - Class in org.apache.taverna.scufl2.xml.scufl.jaxb
-
Java class for statusCodeType complex type.
- StatusCodeType() - Constructor for class org.apache.taverna.scufl2.xml.scufl.jaxb.StatusCodeType
-
- strategy - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Iteration
-
- string - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ActivityInputs.Entry
-
- string - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ActivityPortDefinitionBean.MimeTypes
-
- string - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerParameterNames
-
- string - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerParameterTypes
-
- string - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
-
- string - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.BioMobyEntry
-
- string - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Dependencies
-
- string - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.Entry
-
- string - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.LocalDependencies
-
- string - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetColumnNameEntry
-
- StringConstantActivityParser - Class in org.apache.taverna.scufl2.translator.t2flow.defaultactivities
-
- StringConstantActivityParser() - Constructor for class org.apache.taverna.scufl2.translator.t2flow.defaultactivities.StringConstantActivityParser
-
- StringConstantConfig - Class in org.apache.taverna.scufl2.xml.t2flow.jaxb
-
Java class for StringConstantConfig complex type.
- StringConstantConfig() - Constructor for class org.apache.taverna.scufl2.xml.t2flow.jaxb.StringConstantConfig
-
- StringConstantExtensionParser - Class in org.apache.taverna.scufl2.translator.scufl.processorelement
-
- StringConstantExtensionParser() - Constructor for class org.apache.taverna.scufl2.translator.scufl.processorelement.StringConstantExtensionParser
-
- StringconstantType - Class in org.apache.taverna.scufl2.xml.scufl.jaxb
-
Java class for stringconstantType complex type.
- StringconstantType() - Constructor for class org.apache.taverna.scufl2.xml.scufl.jaxb.StringconstantType
-
- StructuralValidationListener - Interface in org.apache.taverna.scufl2.validation.structural
-
- StructuralValidator - Class in org.apache.taverna.scufl2.validation.structural
-
- StructuralValidator() - Constructor for class org.apache.taverna.scufl2.validation.structural.StructuralValidator
-
- StructureReader - Class in org.apache.taverna.scufl2.api.io.structure
-
A
WorkflowBundleReader that reads a
WorkflowBundle in
Scufl2 Structure format.
- StructureReader() - Constructor for class org.apache.taverna.scufl2.api.io.structure.StructureReader
-
- StructureReader.Level - Enum in org.apache.taverna.scufl2.api.io.structure
-
- StructureWriter - Class in org.apache.taverna.scufl2.api.io.structure
-
A
WorkflowBundleWriter that writes a
WorkflowBundle in Scufl2 Structure
format.
- StructureWriter() - Constructor for class org.apache.taverna.scufl2.api.io.structure.StructureWriter
-
- SubClassOf - Class in org.apache.taverna.scufl2.xml.rdfs
-
Java class for anonymous complex type.
- SubClassOf() - Constructor for class org.apache.taverna.scufl2.xml.rdfs.SubClassOf
-
- subpath(int, int) - Method in class org.apache.taverna.robundle.fs.BundlePath
-
- SubPropertyOf - Class in org.apache.taverna.scufl2.xml.rdfs
-
Java class for anonymous complex type.
- SubPropertyOf() - Constructor for class org.apache.taverna.scufl2.xml.rdfs.SubPropertyOf
-
- subSet(T, T) - Method in class org.apache.taverna.scufl2.api.common.NamedSet
-
- supportedFileAttributeViews() - Method in class org.apache.taverna.robundle.fs.BundleFileSystem
-
- supportsFileAttributeView(Class<? extends FileAttributeView>) - Method in class org.apache.taverna.robundle.fs.BundleFileStore
-
- supportsFileAttributeView(String) - Method in class org.apache.taverna.robundle.fs.BundleFileStore
-
- surname - Static variable in class org.apache.taverna.scufl2.wfdesc.ontologies.Foaf
-
The surname of some person.
- symanticType - Variable in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellInputPortType
-
- symanticType - Variable in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellOutputPortType
-
- symanticType - Variable in class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean
-
- SymanticType() - Constructor for class org.apache.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean.SymanticType
-
- syntactictype - Variable in class org.apache.taverna.baclava.MyGridDataDocumentType
-
- syntactictype - Variable in class org.apache.taverna.scufl2.xml.scufl.jaxb.BeanshellinputType
-
- syntactictype - Variable in class org.apache.taverna.scufl2.xml.scufl.jaxb.BeanshelloutputType
-
- syntacticType - Variable in class org.apache.taverna.scufl2.xml.scufl.jaxb.InputPortType
-
- syntacticType - Variable in class org.apache.taverna.scufl2.xml.scufl.jaxb.OutputPortType
-
- syntacticType - Variable in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellInputPortType
-
- syntacticType - Variable in class org.apache.taverna.scufl2.xml.scufl.jaxb.RshellOutputPortType
-