org.apache.ctakes.typesystem.type.textsem
Class IdentifiedAnnotation

java.lang.Object
  org.apache.uima.cas.impl.FeatureStructureImpl
      org.apache.uima.jcas.cas.TOP
          org.apache.uima.jcas.cas.AnnotationBase
              org.apache.uima.jcas.tcas.Annotation
                  org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation

All Implemented Interfaces:

java.lang.Cloneable, org.apache.uima.cas.AnnotationBaseFS, org.apache.uima.cas.FeatureStructure, org.apache.uima.cas.text.AnnotationFS

Direct Known Subclasses:

ContextAnnotation, DateAnnotation, EntityMention, EventMention, FractionAnnotation, MeasurementAnnotation, Modifier, NonSmokerNamedEntityAnnotation, PADHit, PADLocation, PADTerm, PersonTitleAnnotation, RangeAnnotation, RomanNumeralAnnotation, SmokerNamedEntityAnnotation, TimeAnnotation, TimeMention, UnknownSmokerNamedEntityAnnotation

public class IdentifiedAnnotation
extends org.apache.uima.jcas.tcas.Annotation

Any span of text that has been discovered or flagged for some reason, such as a Named Entity. Allows for mapping to an ontology. Generalized from cTAKES: org.apache.ctakes.typesystem.type.IdentifiedAnnotation. Updated by JCasGen Tue Apr 09 12:44:04 EDT 2013 XML source: trunk/ctakes-pad-term-spotter-res/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml

Field Summary

static int	type
static int	typeIndexID

Fields inherited from class org.apache.uima.jcas.cas.TOP

addr, jcasType

Constructor Summary

protected	IdentifiedAnnotation() Never called.
	IdentifiedAnnotation(int addr, org.apache.uima.jcas.cas.TOP_Type type) Internal - constructor used by generator
	IdentifiedAnnotation(org.apache.uima.jcas.JCas jcas)
	IdentifiedAnnotation(org.apache.uima.jcas.JCas jcas, int begin, int end)

Method Summary

boolean	getConditional() getter for conditional - gets
float	getConfidence() getter for confidence - gets The confidence of the annotation.
int	getDiscoveryTechnique() getter for discoveryTechnique - gets
boolean	getGeneric() getter for generic - gets
int	getHistoryOf() getter for historyOf - gets
int	getId() getter for id - gets
org.apache.uima.jcas.cas.FSArray	getOntologyConceptArr() getter for ontologyConceptArr - gets
OntologyConcept	getOntologyConceptArr(int i) indexed getter for ontologyConceptArr - gets an indexed value -
int	getPolarity() getter for polarity - gets
java.lang.String	getSegmentID() getter for segmentID - gets
java.lang.String	getSentenceID() getter for sentenceID - gets contains the sentence id of the sentence that contains the NE's text span
java.lang.String	getSubject() getter for subject - gets
int	getTypeID() getter for typeID - gets The type of named entity (e.g.
int	getTypeIndexID()
int	getUncertainty() getter for uncertainty - gets
void	setConditional(boolean v) setter for conditional - sets
void	setConfidence(float v) setter for confidence - sets The confidence of the annotation.
void	setDiscoveryTechnique(int v) setter for discoveryTechnique - sets
void	setGeneric(boolean v) setter for generic - sets
void	setHistoryOf(int v) setter for historyOf - sets
void	setId(int v) setter for id - sets
void	setOntologyConceptArr(org.apache.uima.jcas.cas.FSArray v) setter for ontologyConceptArr - sets
void	setOntologyConceptArr(int i, OntologyConcept v) indexed setter for ontologyConceptArr - sets an indexed value -
void	setPolarity(int v) setter for polarity - sets
void	setSegmentID(java.lang.String v) setter for segmentID - sets
void	setSentenceID(java.lang.String v) setter for sentenceID - sets contains the sentence id of the sentence that contains the NE's text span
void	setSubject(java.lang.String v) setter for subject - sets
void	setTypeID(int v) setter for typeID - sets The type of named entity (e.g.
void	setUncertainty(int v) setter for uncertainty - sets

Methods inherited from class org.apache.uima.jcas.tcas.Annotation

getBegin, getCoveredText, getEnd, getStart, setBegin, setEnd

Methods inherited from class org.apache.uima.jcas.cas.AnnotationBase

getSofa, getView

Methods inherited from class org.apache.uima.jcas.cas.TOP

addToIndexes, addToIndexes, equals, getAddress, getCAS, getCASImpl, getLowLevelCas, hashCode, removeFromIndexes, removeFromIndexes

Methods inherited from class org.apache.uima.cas.impl.FeatureStructureImpl

clone, getBooleanValue, getByteValue, getDoubleValue, getFeatureValue, getFeatureValueAsString, getFloatValue, getIntValue, getLongValue, getShortValue, getStringValue, getType, prettyPrint, prettyPrint, prettyPrint, setBooleanValue, setByteValue, setDoubleValue, setFeatureValue, setFeatureValueFromString, setFloatValue, setIntValue, setLongValue, setShortValue, setStringValue, toString, toString

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.apache.uima.cas.AnnotationBaseFS

getView

Methods inherited from interface org.apache.uima.cas.FeatureStructure

clone, equals, getBooleanValue, getByteValue, getCAS, getDoubleValue, getFeatureValue, getFeatureValueAsString, getFloatValue, getIntValue, getLongValue, getShortValue, getStringValue, getType, hashCode, setBooleanValue, setByteValue, setDoubleValue, setFeatureValue, setFeatureValueFromString, setFloatValue, setIntValue, setLongValue, setShortValue, setStringValue

Field Detail

typeIndexID

public static final int typeIndexID

type

public static final int type

Constructor Detail

IdentifiedAnnotation

protected IdentifiedAnnotation()

Never called. Disable default constructor

IdentifiedAnnotation

public IdentifiedAnnotation(int addr,
                            org.apache.uima.jcas.cas.TOP_Type type)

Internal - constructor used by generator

IdentifiedAnnotation

public IdentifiedAnnotation(org.apache.uima.jcas.JCas jcas)

IdentifiedAnnotation

public IdentifiedAnnotation(org.apache.uima.jcas.JCas jcas,
                            int begin,
                            int end)

Method Detail

getTypeIndexID

public int getTypeIndexID()

Overrides:

getTypeIndexID in class org.apache.uima.jcas.tcas.Annotation

getId

public int getId()

getter for id - gets

setId

public void setId(int v)

setter for id - sets

getOntologyConceptArr

public org.apache.uima.jcas.cas.FSArray getOntologyConceptArr()

getter for ontologyConceptArr - gets

setOntologyConceptArr

public void setOntologyConceptArr(org.apache.uima.jcas.cas.FSArray v)

setter for ontologyConceptArr - sets

getOntologyConceptArr

public OntologyConcept getOntologyConceptArr(int i)

indexed getter for ontologyConceptArr - gets an indexed value -

setOntologyConceptArr

public void setOntologyConceptArr(int i,
                                  OntologyConcept v)

indexed setter for ontologyConceptArr - sets an indexed value -

getTypeID

public int getTypeID()

getter for typeID - gets The type of named entity (e.g. drug, disorder, ...)

setTypeID

public void setTypeID(int v)

setter for typeID - sets The type of named entity (e.g. drug, disorder, ...)

getSegmentID

public java.lang.String getSegmentID()

getter for segmentID - gets

setSegmentID

public void setSegmentID(java.lang.String v)

setter for segmentID - sets

getSentenceID

public java.lang.String getSentenceID()

getter for sentenceID - gets contains the sentence id of the sentence that contains the NE's text span

setSentenceID

public void setSentenceID(java.lang.String v)

setter for sentenceID - sets contains the sentence id of the sentence that contains the NE's text span

getDiscoveryTechnique

public int getDiscoveryTechnique()

getter for discoveryTechnique - gets

setDiscoveryTechnique

public void setDiscoveryTechnique(int v)

setter for discoveryTechnique - sets

getConfidence

public float getConfidence()

getter for confidence - gets The confidence of the annotation.

setConfidence

public void setConfidence(float v)

setter for confidence - sets The confidence of the annotation.

getPolarity

public int getPolarity()

getter for polarity - gets

setPolarity

public void setPolarity(int v)

setter for polarity - sets

getUncertainty

public int getUncertainty()

getter for uncertainty - gets

setUncertainty

public void setUncertainty(int v)

setter for uncertainty - sets

getConditional

public boolean getConditional()

getter for conditional - gets

setConditional

public void setConditional(boolean v)

setter for conditional - sets

getGeneric

public boolean getGeneric()

getter for generic - gets

setGeneric

public void setGeneric(boolean v)

setter for generic - sets

getSubject

public java.lang.String getSubject()

getter for subject - gets

setSubject

public void setSubject(java.lang.String v)

setter for subject - sets

getHistoryOf

public int getHistoryOf()

getter for historyOf - gets

setHistoryOf

public void setHistoryOf(int v)

setter for historyOf - sets