A C D E G I L M O P R S T U

A

addAnnotation(Annotation) - Method in class org.apache.ctakes.preprocessor.DocumentMetaData

Adds a single annotation to the syntactic cue annotation list.

addAnnotations(List) - Method in class org.apache.ctakes.preprocessor.DocumentMetaData

Adds a list of annotations to the syntactic cue annotation list.

addMetaData(Object, Object) - Method in class org.apache.ctakes.preprocessor.DocumentMetaData

Adds a meta data entry for the document.

addSegment(SegmentMetaData) - Method in class org.apache.ctakes.preprocessor.DocumentMetaData

Adds a segment.

Annotation - Class in org.apache.ctakes.preprocessor

Annotation() - Constructor for class org.apache.ctakes.preprocessor.Annotation

C

CdaCasInitializer - Class in org.apache.ctakes.preprocessor.ae

Bootstraps the CAS by: Transforms document's original CDA text into plain text, inserting section (segment) markers into text . Transformation also inserts hyphens into words that should be hyphenated Stores the resulting text in a new View (which has its own Sofa) Detects sections and adds Segment (aka section) annotations Extracts document level data and stores in CAS as Property annotations.

CdaCasInitializer() - Constructor for class org.apache.ctakes.preprocessor.ae.CdaCasInitializer

characters(char[], int, int) - Method in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

ClinicalNotePreProcessor - Class in org.apache.ctakes.preprocessor

Given an HL7 document, the text contained inside a section is extracted.

ClinicalNotePreProcessor(File, boolean) - Constructor for class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

Constructor

compress(StringBuffer) - Static method in class org.apache.ctakes.preprocessor.Utility

remove leading and trailing whitespace from each line

D

DocumentMetaData - Class in org.apache.ctakes.preprocessor

DocumentMetaData() - Constructor for class org.apache.ctakes.preprocessor.DocumentMetaData

DTDloader - Class in org.apache.ctakes.preprocessor

Use to load DTD from classpath.

DTDloader(File) - Constructor for class org.apache.ctakes.preprocessor.DTDloader

E

end - Variable in class org.apache.ctakes.preprocessor.IntegerRange

endDocument() - Method in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

endElement(String, String, String) - Method in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

endOffset - Variable in class org.apache.ctakes.preprocessor.Annotation

exists(File) - Static method in class org.apache.ctakes.preprocessor.test.TestDriver

G

getAnnotations() - Method in class org.apache.ctakes.preprocessor.DocumentMetaData

Gets a list of Annotation objects that represent annotations based off of document syntactic cues.

getMetaData() - Method in class org.apache.ctakes.preprocessor.DocumentMetaData

Gets a map of meta data about the document.

getSegment(String) - Method in class org.apache.ctakes.preprocessor.DocumentMetaData

Gets meta data about the specified segment.

getSegmentIdentifiers() - Method in class org.apache.ctakes.preprocessor.DocumentMetaData

Gets a set of segment identifiers.

getText() - Method in class org.apache.ctakes.preprocessor.DocumentMetaData

I

id - Variable in class org.apache.ctakes.preprocessor.SegmentMetaData

initialize(UimaContext) - Method in class org.apache.ctakes.preprocessor.ae.CdaCasInitializer

initialize() - Method in class org.apache.ctakes.preprocessor.ae.CdaCasInitializer

IntegerRange - Class in org.apache.ctakes.preprocessor

Defines a range of integers.

IntegerRange() - Constructor for class org.apache.ctakes.preprocessor.IntegerRange

iv_type - Variable in class org.apache.ctakes.preprocessor.Annotation

L

load(String) - Static method in class org.apache.ctakes.preprocessor.test.TestDriver

Loads text from a file.

M

main(String[]) - Static method in class org.apache.ctakes.preprocessor.test.TestDriver

MD_KEY_ADMIT_DATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_CUSTOMER_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_DISCHARGE_DATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_DOC_CONFIDENTIAL_IND - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_DOC_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_DOC_LINK_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_DOC_REVISION_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_DOC_STATUS_CODE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_EVENT_TYPE_CODE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_FACILITY_CODE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_HISTORY_SECTION - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_LOCATION - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_MINUTES_COUNSELING - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_NOTE_DATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_PATIENT_CITY - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_PATIENT_CNT - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_PATIENT_STATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_PATIENT_STREET_ADDR - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_PATIENT_ZIP - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_PROVIDER2_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_PROVIDER_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_PT_BILLING_CODE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_PT_BIRTH_DATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_PT_BMI - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_PT_BSA - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_PT_GENDER - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_PT_HEAD_CIRCUMFERENCE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_PT_HEIGHT - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_PT_RESPIRATORY_RATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_PT_TEMPERATURE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_PT_WEIGHT - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_REV_DATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_SERVICE_CODE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_SIGNATURE_DATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_SIGNATURE_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_SITE_CODE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_TOTAL_TIME - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_TRANSCRIBER_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

MD_KEY_TRANSCRIPTION_DATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

O

org.apache.ctakes.preprocessor - package org.apache.ctakes.preprocessor

org.apache.ctakes.preprocessor.ae - package org.apache.ctakes.preprocessor.ae

org.apache.ctakes.preprocessor.test - package org.apache.ctakes.preprocessor.test

P

PreProcessor - Interface in org.apache.ctakes.preprocessor

process(JCas) - Method in class org.apache.ctakes.preprocessor.ae.CdaCasInitializer

process(String) - Method in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

process(String) - Method in interface org.apache.ctakes.preprocessor.PreProcessor

Process a document to retrieve meta data about the document.

R

replaceNonAsciiChars(StringBuffer, char) - Static method in class org.apache.ctakes.preprocessor.Utility

Replaces any non-ascii characters with the specified char.

resolveEntity(String, String) - Method in class org.apache.ctakes.preprocessor.DTDloader

S

SegmentMetaData - Class in org.apache.ctakes.preprocessor

MetaData about a segment.

SegmentMetaData() - Constructor for class org.apache.ctakes.preprocessor.SegmentMetaData

setText(String) - Method in class org.apache.ctakes.preprocessor.DocumentMetaData

span - Variable in class org.apache.ctakes.preprocessor.SegmentMetaData

start - Variable in class org.apache.ctakes.preprocessor.IntegerRange

startDocument() - Method in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

startElement(String, String, String, Attributes) - Method in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

startOffset - Variable in class org.apache.ctakes.preprocessor.Annotation

T

TestDriver - Class in org.apache.ctakes.preprocessor.test

TestDriver() - Constructor for class org.apache.ctakes.preprocessor.test.TestDriver

textSpans - Variable in class org.apache.ctakes.preprocessor.SegmentMetaData

U

UNKNOWN_TABLE_TYPE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor

Utility - Class in org.apache.ctakes.preprocessor

Utility() - Constructor for class org.apache.ctakes.preprocessor.Utility

A C D E G I L M O P R S T U