org.apache.ctakes.padtermspotter.ae
Class PADHitAnnotator

java.lang.Object
  org.apache.uima.analysis_component.AnalysisComponent_ImplBase
      org.apache.uima.analysis_component.Annotator_ImplBase
          org.apache.uima.analysis_component.JCasAnnotator_ImplBase
              org.apache.ctakes.padtermspotter.ae.PADHitAnnotator

All Implemented Interfaces:

org.apache.uima.analysis_component.AnalysisComponent

public class PADHitAnnotator
extends org.apache.uima.analysis_component.JCasAnnotator_ImplBase

Nested Class Summary

(package private) class

PADHitAnnotator.HitComparator

Field Summary

static java.lang.String	ANN_PART_ONE_TYPES_TO_IGNORE List of type ids to be ignored from being considered as hits.
static java.lang.String	ANN_PART_TWO_TYPES_TO_IGNORE List of type ids to be ignored from being considered as hits.
static java.lang.String	ANNOTATION_PART_ONE_FILTEROUT_NEGATED Flag to specify whether to filter out negated hits identified for ANNOTATION_PART_ONE_OF_PAIR
static java.lang.String	ANNOTATION_PART_ONE_OF_PAIR Part 1 of the pair (of annotations) that makes up a hit
static java.lang.String	ANNOTATION_PART_TWO_FILTEROUT_NEGATED Flag to specify whether to filter out negated hits identified for ANNOTATION_PART_TWO_OF_PAIR
static java.lang.String	ANNOTATION_PART_TWO_OF_PAIR Part 2 of the pair (of annotations) that makes up a hit
static java.lang.String	BACKUP_BOUNDARY_ANN_TYPE Annotation type that defines a backup boundary within which the dictionary hits should be present.
static java.lang.String	BOUNDARY_ANN_TYPE Annotation type that defines the boundary within which the dictionary hits should be present.
static java.lang.String	DISTANCE Count of annotations defined by DISTANCE_ANN_TYPE between ANNOTATION_PART_ONE_OF_PAIR and ANNOTATION_PART_TWO_OF_PAIR
static java.lang.String	DISTANCE_ANN_TYPE Annotation type that is used to count the distance.
static org.apache.log4j.Logger	iv_logger
static int	NO_ANNOTATION_TYPE_SPECIFIED
static int	NO_WINDOW_SIZE_SPECIFIED

Constructor Summary

PADHitAnnotator()

Method Summary

void	initialize(org.apache.uima.UimaContext aCtx)
protected void	loadStopWords(java.io.File stopWordsFile)
void	process(org.apache.uima.jcas.JCas jcas)

Methods inherited from class org.apache.uima.analysis_component.JCasAnnotator_ImplBase

getRequiredCasInterface, process

Methods inherited from class org.apache.uima.analysis_component.Annotator_ImplBase

getCasInstancesRequired, hasNext, next

Methods inherited from class org.apache.uima.analysis_component.AnalysisComponent_ImplBase

batchProcessComplete, collectionProcessComplete, destroy, getContext, getResultSpecification, reconfigure, setResultSpecification

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

iv_logger

public static org.apache.log4j.Logger iv_logger

ANNOTATION_PART_ONE_OF_PAIR

public static java.lang.String ANNOTATION_PART_ONE_OF_PAIR

Part 1 of the pair (of annotations) that makes up a hit

ANNOTATION_PART_TWO_OF_PAIR

public static java.lang.String ANNOTATION_PART_TWO_OF_PAIR

Part 2 of the pair (of annotations) that makes up a hit

DISTANCE

public static java.lang.String DISTANCE

Count of annotations defined by DISTANCE_ANN_TYPE between ANNOTATION_PART_ONE_OF_PAIR and ANNOTATION_PART_TWO_OF_PAIR

DISTANCE_ANN_TYPE

public static java.lang.String DISTANCE_ANN_TYPE

Annotation type that is used to count the distance.

BOUNDARY_ANN_TYPE

public static java.lang.String BOUNDARY_ANN_TYPE

Annotation type that defines the boundary within which the dictionary hits should be present.

BACKUP_BOUNDARY_ANN_TYPE

public static java.lang.String BACKUP_BOUNDARY_ANN_TYPE

Annotation type that defines a backup boundary within which the dictionary hits should be present. This backup boundary will be used if no boundary annotations are present

ANNOTATION_PART_ONE_FILTEROUT_NEGATED

public static java.lang.String ANNOTATION_PART_ONE_FILTEROUT_NEGATED

Flag to specify whether to filter out negated hits identified for ANNOTATION_PART_ONE_OF_PAIR

ANNOTATION_PART_TWO_FILTEROUT_NEGATED

public static java.lang.String ANNOTATION_PART_TWO_FILTEROUT_NEGATED

Flag to specify whether to filter out negated hits identified for ANNOTATION_PART_TWO_OF_PAIR

ANN_PART_ONE_TYPES_TO_IGNORE

public static java.lang.String ANN_PART_ONE_TYPES_TO_IGNORE

List of type ids to be ignored from being considered as hits. Note these type ids are ids specified in the CSV dictionaries.

ANN_PART_TWO_TYPES_TO_IGNORE

public static java.lang.String ANN_PART_TWO_TYPES_TO_IGNORE

List of type ids to be ignored from being considered as hits. Note these type ids are ids specified in the CSV dictionaries.

NO_WINDOW_SIZE_SPECIFIED

public static int NO_WINDOW_SIZE_SPECIFIED

NO_ANNOTATION_TYPE_SPECIFIED

public static int NO_ANNOTATION_TYPE_SPECIFIED

Constructor Detail

PADHitAnnotator

public PADHitAnnotator()

Method Detail

initialize

public void initialize(org.apache.uima.UimaContext aCtx)
                throws org.apache.uima.resource.ResourceInitializationException

Specified by:

initialize in interface org.apache.uima.analysis_component.AnalysisComponent

Overrides:

initialize in class org.apache.uima.analysis_component.AnalysisComponent_ImplBase

Throws:

org.apache.uima.resource.ResourceInitializationException

process

public void process(org.apache.uima.jcas.JCas jcas)
             throws org.apache.uima.analysis_engine.AnalysisEngineProcessException

Specified by:

process in class org.apache.uima.analysis_component.JCasAnnotator_ImplBase

Throws:

org.apache.uima.analysis_engine.AnalysisEngineProcessException

loadStopWords

protected void loadStopWords(java.io.File stopWordsFile)
                      throws java.io.FileNotFoundException,
                             java.io.IOException

Throws:

java.io.FileNotFoundException

java.io.IOException