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EditDistance
- Class in
org.apache.ctakes.coreference.util
EditDistance()
- Constructor for class org.apache.ctakes.coreference.util.
EditDistance
edu.mayo.bmi.lookup.type
- package edu.mayo.bmi.lookup.type
Element
- Class in
org.apache.ctakes.typesystem.type.refsem
A basic semantic unit that refers to something in the real world, including Entities, Events, Attributes, Dates.
Element()
- Constructor for class org.apache.ctakes.typesystem.type.refsem.
Element
Never called.
Element(int, TOP_Type)
- Constructor for class org.apache.ctakes.typesystem.type.refsem.
Element
Internal - constructor used by generator
Element(JCas)
- Constructor for class org.apache.ctakes.typesystem.type.refsem.
Element
Element_Type
- Class in
org.apache.ctakes.typesystem.type.refsem
A basic semantic unit that refers to something in the real world, including Entities, Events, Attributes, Dates.
Element_Type(JCas, Type)
- Constructor for class org.apache.ctakes.typesystem.type.refsem.
Element_Type
initialize variables to correspond with Cas Type and Features
ElementRelation
- Class in
org.apache.ctakes.typesystem.type.relation
A super-type referring to real-world semantic relationships, e.g., TemporalRelations between two Events.
ElementRelation()
- Constructor for class org.apache.ctakes.typesystem.type.relation.
ElementRelation
Never called.
ElementRelation(int, TOP_Type)
- Constructor for class org.apache.ctakes.typesystem.type.relation.
ElementRelation
Internal - constructor used by generator
ElementRelation(JCas)
- Constructor for class org.apache.ctakes.typesystem.type.relation.
ElementRelation
ElementRelation_Type
- Class in
org.apache.ctakes.typesystem.type.relation
A super-type referring to real-world semantic relationships, e.g., TemporalRelations between two Events.
ElementRelation_Type(JCas, Type)
- Constructor for class org.apache.ctakes.typesystem.type.relation.
ElementRelation_Type
initialize variables to correspond with Cas Type and Features
ELIXIR
- Static variable in class org.apache.ctakes.drugner.elements.
FormElement
ellipsisExpectedResults
- Variable in class org.apache.ctakes.core.ae.
TokenizerAnnotatorPTBTests
ellipsisTest
- Variable in class org.apache.ctakes.core.ae.
TokenizerAnnotatorPTBTests
emptyStringList
- Static variable in class org.apache.ctakes.core.nlp.tokenizer.
TokenizerPTB
emptyTokenList
- Static variable in class org.apache.ctakes.core.nlp.tokenizer.
TokenizerPTB
EMULSION
- Static variable in class org.apache.ctakes.drugner.elements.
FormElement
end
- Variable in class org.apache.ctakes.core.knowtator.
KnowtatorAnnotation.Span
The offset immediately after the last character in the text span.
end
- Variable in class org.apache.ctakes.preprocessor.
IntegerRange
end
- Variable in class org.apache.ctakes.relationextractor.knowtator.
Span
endDate
- Variable in class org.apache.ctakes.drugner.
DrugMention
endDocument()
- Method in class org.apache.ctakes.preprocessor.
ClinicalNotePreProcessor
endElement(String, String, String)
- Method in class org.apache.ctakes.preprocessor.
ClinicalNotePreProcessor
endElement(String, String, String)
- Method in class org.apache.ctakes.utils.xcas_comparison.
XcasProcessor
endMatch(String, String)
- Static method in class org.apache.ctakes.coreference.util.
TextMatch
endOffset
- Variable in class org.apache.ctakes.preprocessor.
Annotation
EndOfSentenceScannerImpl
- Class in
org.apache.ctakes.core.sentence
End of Sentence scanner with more candidate end-of-sentence characters than the default.
EndOfSentenceScannerImpl()
- Constructor for class org.apache.ctakes.core.sentence.
EndOfSentenceScannerImpl
ENEMA
- Static variable in class org.apache.ctakes.drugner.elements.
FormElement
ENG_LEMMATIZER_DATA_FILE
- Static variable in class org.apache.ctakes.dependency.parser.ae.
ClearParserDependencyParserAE
ENG_LEMMATIZER_DATA_FILE
- Static variable in class org.apache.ctakes.dependency.parser.ae.
ClearParserSemanticRoleLabelerAE
enter(Object)
- Method in class org.apache.ctakes.core.fsm.state.
NamedState
enter(Object)
- Method in class org.apache.ctakes.core.fsm.state.
NonTerminalEndState
enter(Object)
- Method in class org.apache.ctakes.drugner.fsm.states.util.
IndentStartState
Entity
- Class in
org.apache.ctakes.typesystem.type.refsem
A real-world entity such as a body part.
Entity()
- Constructor for class org.apache.ctakes.typesystem.type.refsem.
Entity
Never called.
Entity(int, TOP_Type)
- Constructor for class org.apache.ctakes.typesystem.type.refsem.
Entity
Internal - constructor used by generator
Entity(JCas)
- Constructor for class org.apache.ctakes.typesystem.type.refsem.
Entity
Entity_Type
- Class in
org.apache.ctakes.typesystem.type.refsem
A real-world entity such as a body part.
Entity_Type(JCas, Type)
- Constructor for class org.apache.ctakes.typesystem.type.refsem.
Entity_Type
initialize variables to correspond with Cas Type and Features
entityCount
- Variable in class org.apache.ctakes.postagger.test.
CpeTests.StatusCallbackListenerImpl
EntityMention
- Class in
org.apache.ctakes.typesystem.type.textsem
A text string (IdentifiedAnnotation) that refers to an Entity.
EntityMention()
- Constructor for class org.apache.ctakes.typesystem.type.textsem.
EntityMention
Never called.
EntityMention(int, TOP_Type)
- Constructor for class org.apache.ctakes.typesystem.type.textsem.
EntityMention
Internal - constructor used by generator
EntityMention(JCas)
- Constructor for class org.apache.ctakes.typesystem.type.textsem.
EntityMention
EntityMention(JCas, int, int)
- Constructor for class org.apache.ctakes.typesystem.type.textsem.
EntityMention
EntityMention_Type
- Class in
org.apache.ctakes.typesystem.type.textsem
A text string (IdentifiedAnnotation) that refers to an Entity.
EntityMention_Type(JCas, Type)
- Constructor for class org.apache.ctakes.typesystem.type.textsem.
EntityMention_Type
initialize variables to correspond with Cas Type and Features
EntityMentionPairRelationExtractorAnnotator
- Class in
org.apache.ctakes.relationextractor.ae
Identifies and classifies relations between pairs of named entities
EntityMentionPairRelationExtractorAnnotator()
- Constructor for class org.apache.ctakes.relationextractor.ae.
EntityMentionPairRelationExtractorAnnotator
entityProcessComplete(CAS, EntityProcessStatus)
- Method in class org.apache.ctakes.postagger.test.
CpeTests.StatusCallbackListenerImpl
Called when the processing of a Document is completed.
EntitySpanFeatureExtractor
- Class in
org.apache.ctakes.relationextractor.ae.features
Features that indicate whether both arguments are contained within an NP.
EntitySpanFeatureExtractor()
- Constructor for class org.apache.ctakes.relationextractor.ae.features.
EntitySpanFeatureExtractor
ENTRY_FEATURE
- Static variable in class org.apache.ctakes.dependency.parser.ae.
ClearParserUtil
ENTRY_LEXICA
- Static variable in class org.apache.ctakes.dependency.parser.ae.
ClearParserUtil
ENTRY_MODEL
- Static variable in class org.apache.ctakes.dependency.parser.ae.
ClearParserUtil
ENTRY_PARSER
- Static variable in class org.apache.ctakes.dependency.parser.ae.
ClearParserUtil
EnvironmentVariable
- Class in
org.apache.ctakes.utils.env
EnvironmentVariable()
- Constructor for class org.apache.ctakes.utils.env.
EnvironmentVariable
EolToken
- Interface in
org.apache.ctakes.core.fsm.token
EQ_OP
- Static variable in interface org.apache.ctakes.dictionary.lookup.
MetaDataHitConst
EQ_OP
- Static variable in class org.apache.ctakes.dictionary.lookup.strtable.
FieldConstraintImpl
equalCoverage(Annotation, Annotation)
- Static method in class org.apache.ctakes.dependency.parser.util.
ClearDependencyUtility
Equality expressions to aid in converting between DepNodes and CAS objects
equalCoverage(Annotation, Annotation)
- Static method in class org.apache.ctakes.dependency.parser.util.
DependencyUtility
Equality expressions to aid in converting between DepNodes and CAS objects
equals(Object)
- Method in class org.apache.ctakes.core.knowtator.
KnowtatorAnnotation
equals(Object)
- Method in class org.apache.ctakes.core.knowtator.
KnowtatorAnnotation.Span
equals(Object)
- Method in class org.apache.ctakes.coreference.eval.helpers.
Span
equals(MetaDataHit)
- Method in class org.apache.ctakes.dictionary.lookup.
BaseMetaDataHitImpl
Two MetaDataHits are equal if their Meta field name/value pairs are equal.
equals(MetaDataHit)
- Method in interface org.apache.ctakes.dictionary.lookup.
MetaDataHit
equals(Object)
- Method in class org.apache.ctakes.dictionary.lookup.vo.
LookupHit
Override default equals method.
equals(Object)
- Method in class org.apache.ctakes.relationextractor.ae.
RelationExtractorAnnotator.HashableArguments
equals(Object)
- Method in class org.apache.ctakes.relationextractor.eval.
RelationExtractorEvaluation.ParameterSettings
equals(Object)
- Method in class org.apache.ctakes.relationextractor.knowtator.
RelationInfo
equals(Object)
- Method in class org.apache.ctakes.relationextractor.knowtator.
Span
equals(Object)
- Method in class org.apache.ctakes.utils.xcas_comparison.
XcasAnnotation
Determines whether the specified object equals to this one.
equals(Object)
- Method in class org.apache.ctakes.utils.xcas_comparison.
XcasFile
Checks whether the specified object has the same set of annotations.
equivCls(int[])
- Method in class org.apache.ctakes.coreference.util.
ParentPtrTree
errorFile
- Variable in class org.apache.ctakes.relationextractor.ae.
RelationExtractorAnnotator
errorOutStream
- Variable in class org.apache.ctakes.relationextractor.ae.
RelationExtractorAnnotator
eval(Object, Object)
- Method in class org.apache.ctakes.constituency.parser.treekernel.
TreeKernel
eval(Object, Object)
- Method in class org.apache.ctakes.utils.kernel.
Kernel
eval(Object, Object)
- Method in class org.apache.ctakes.utils.kernel.
PolyKernel
eval(Object, Object)
- Method in class org.apache.ctakes.utils.kernel.
RBFKernel
Event
- Class in
org.apache.ctakes.typesystem.type.refsem
A real-world event; similar to Entity, but may bear some temporal properties and relationships.
Event()
- Constructor for class org.apache.ctakes.typesystem.type.refsem.
Event
Never called.
Event(int, TOP_Type)
- Constructor for class org.apache.ctakes.typesystem.type.refsem.
Event
Internal - constructor used by generator
Event(JCas)
- Constructor for class org.apache.ctakes.typesystem.type.refsem.
Event
Event_Type
- Class in
org.apache.ctakes.typesystem.type.refsem
A real-world event; similar to Entity, but may bear some temporal properties and relationships.
Event_Type(JCas, Type)
- Constructor for class org.apache.ctakes.typesystem.type.refsem.
Event_Type
initialize variables to correspond with Cas Type and Features
EventMention
- Class in
org.apache.ctakes.typesystem.type.textsem
A text string (IdentifiedAnnotation) that refers to an Event.
EventMention()
- Constructor for class org.apache.ctakes.typesystem.type.textsem.
EventMention
Never called.
EventMention(int, TOP_Type)
- Constructor for class org.apache.ctakes.typesystem.type.textsem.
EventMention
Internal - constructor used by generator
EventMention(JCas)
- Constructor for class org.apache.ctakes.typesystem.type.textsem.
EventMention
EventMention(JCas, int, int)
- Constructor for class org.apache.ctakes.typesystem.type.textsem.
EventMention
EventMention_Type
- Class in
org.apache.ctakes.typesystem.type.textsem
A text string (IdentifiedAnnotation) that refers to an Event.
EventMention_Type(JCas, Type)
- Constructor for class org.apache.ctakes.typesystem.type.textsem.
EventMention_Type
initialize variables to correspond with Cas Type and Features
EventProperties
- Class in
org.apache.ctakes.typesystem.type.refsem
A set of mostly temporal properties that are unique to Events.
EventProperties()
- Constructor for class org.apache.ctakes.typesystem.type.refsem.
EventProperties
Never called.
EventProperties(int, TOP_Type)
- Constructor for class org.apache.ctakes.typesystem.type.refsem.
EventProperties
Internal - constructor used by generator
EventProperties(JCas)
- Constructor for class org.apache.ctakes.typesystem.type.refsem.
EventProperties
EventProperties_Type
- Class in
org.apache.ctakes.typesystem.type.refsem
A set of mostly temporal properties that are unique to Events.
EventProperties_Type(JCas, Type)
- Constructor for class org.apache.ctakes.typesystem.type.refsem.
EventProperties_Type
initialize variables to correspond with Cas Type and Features
EVERYOTHERDAY
- Static variable in class org.apache.ctakes.drugner.elements.
FrequencyUnitElement
execute(List<? extends BaseToken>)
- Method in class org.apache.ctakes.core.fsm.machine.
DateFSM
Executes the finite state machines.
execute(List<? extends BaseToken>)
- Method in class org.apache.ctakes.core.fsm.machine.
FractionFSM
Executes the finite state machines.
execute(List)
- Method in interface org.apache.ctakes.core.fsm.machine.
FSM
execute(List<? extends BaseToken>, Set<? extends BaseToken>)
- Method in class org.apache.ctakes.core.fsm.machine.
MeasurementFSM
Executes the finite state machines.
execute(List<?>)
- Method in class org.apache.ctakes.core.fsm.machine.
NegationFSM
Executes the finite state machines.
execute(List<? extends BaseToken>)
- Method in class org.apache.ctakes.core.fsm.machine.
PersonTitleFSM
Executes the finite state machines.
execute(List<? extends BaseToken>, Set<? extends BaseToken>)
- Method in class org.apache.ctakes.core.fsm.machine.
RangeFSM
Executes the finite state machines.
execute(List<? extends BaseToken>)
- Method in class org.apache.ctakes.core.fsm.machine.
RomanNumeralFSM
Executes the finite state machines.
execute(List<TextToken>)
- Method in class org.apache.ctakes.core.fsm.machine.
StatusIndicatorFSM
Executes the finite state machines.
execute(List<? extends BaseToken>)
- Method in class org.apache.ctakes.core.fsm.machine.
TimeFSM
Executes the finite state machines.
execute(List)
- Method in class org.apache.ctakes.drugner.fsm.machines.elements.
DecimalStrengthFSM
Executes the finite state machines.
execute(List, Set, Set)
- Method in class org.apache.ctakes.drugner.fsm.machines.elements.
DosagesFSM
Executes the finite state machines.
execute(List, Set)
- Method in class org.apache.ctakes.drugner.fsm.machines.elements.
DosagesFSM
Executes the finite state machines.
execute(List)
- Method in class org.apache.ctakes.drugner.fsm.machines.elements.
DrugChangeStatusFSM
Executes the finite state machines.
execute(List, Set)
- Method in class org.apache.ctakes.drugner.fsm.machines.elements.
DurationFSM
Executes the finite state machines.
execute(List)
- Method in class org.apache.ctakes.drugner.fsm.machines.elements.
DurationFSM
Executes the finite state machines.
execute(List, Set)
- Method in class org.apache.ctakes.drugner.fsm.machines.elements.
FormFSM
Executes the finite state machines.
execute(List)
- Method in class org.apache.ctakes.drugner.fsm.machines.elements.
FormFSM
Executes the finite state machines.
execute(List)
- Method in class org.apache.ctakes.drugner.fsm.machines.elements.
FractionStrengthFSM
Executes the finite state machines.
execute(List, Set)
- Method in class org.apache.ctakes.drugner.fsm.machines.elements.
FrequencyFSM
Executes the finite state machines.
execute(List)
- Method in class org.apache.ctakes.drugner.fsm.machines.elements.
FrequencyFSM
Executes the finite state machines.
execute(List, Set, Set)
- Method in class org.apache.ctakes.drugner.fsm.machines.elements.
FrequencyFSM
Executes the finite state machines.
execute(List, Set)
- Method in class org.apache.ctakes.drugner.fsm.machines.elements.
FrequencyUnitFSM
Executes the finite state machines.
execute(List)
- Method in class org.apache.ctakes.drugner.fsm.machines.elements.
FrequencyUnitFSM
Executes the finite state machines.
execute(List, Set)
- Method in class org.apache.ctakes.drugner.fsm.machines.elements.
RangeStrengthFSM
Executes the finite state machines.
execute(List)
- Method in class org.apache.ctakes.drugner.fsm.machines.elements.
RangeStrengthFSM
Executes the finite state machines.
execute(List, Set)
- Method in class org.apache.ctakes.drugner.fsm.machines.elements.
RouteFSM
Executes the finite state machines.
execute(List)
- Method in class org.apache.ctakes.drugner.fsm.machines.elements.
RouteFSM
Executes the finite state machines.
execute(List, Set, Set)
- Method in class org.apache.ctakes.drugner.fsm.machines.elements.
StrengthFSM
Executes the finite state machines.
execute(List, Set)
- Method in class org.apache.ctakes.drugner.fsm.machines.elements.
StrengthFSM
Executes the finite state machines.
execute(List)
- Method in class org.apache.ctakes.drugner.fsm.machines.elements.
StrengthFSM
Executes the finite state machines.
execute(List, Set, Set)
- Method in class org.apache.ctakes.drugner.fsm.machines.elements.
StrengthUnitFSM
Executes the finite state machines.
execute(List, Set)
- Method in class org.apache.ctakes.drugner.fsm.machines.elements.
StrengthUnitFSM
Executes the finite state machines.
execute(List)
- Method in class org.apache.ctakes.drugner.fsm.machines.util.
HyphenatedDrugFSM
Executes the finite state machines.
execute(List)
- Method in class org.apache.ctakes.drugner.fsm.machines.util.
NegIndicatorFSM
Executes the finite state machines.
execute(List)
- Method in class org.apache.ctakes.drugner.fsm.machines.util.
NonIndicatorFSM
Executes the finite state machines.
execute(List)
- Method in class org.apache.ctakes.drugner.fsm.machines.util.
StatusIndicatorFSM
Executes the finite state machines.
execute(List)
- Method in class org.apache.ctakes.drugner.fsm.machines.util.
SubSectionIndicatorFSM
Executes the finite state machines.
execute(List, Set)
- Method in class org.apache.ctakes.drugner.fsm.machines.util.
SuffixFrequencyFSM
Executes the finite state machines.
execute(List)
- Method in class org.apache.ctakes.drugner.fsm.machines.util.
SuffixFrequencyFSM
Executes the finite state machines.
execute(List, Set)
- Method in class org.apache.ctakes.drugner.fsm.machines.util.
SuffixStrengthFSM
Executes the finite state machines.
execute(List<? extends BaseToken>)
- Method in class org.apache.ctakes.padtermspotter.fsm.pad.machine.
DxIndicatorFSM
Executes the finite state machines.
execute(List<? extends BaseToken>)
- Method in class org.apache.ctakes.padtermspotter.fsm.pad.machine.
NegDxIndicatorFSM
Executes the finite state machines.
execute(List<? extends BaseToken>)
- Method in class org.apache.ctakes.padtermspotter.fsm.pad.machine.
SubSectionPadIdFSM
execute(List<?>)
- Method in class org.apache.ctakes.smokingstatus.machine.
NegationFSM
Executes the finite state machines.
exists(File)
- Static method in class org.apache.ctakes.preprocessor.test.
TestDriver
exit()
- Method in class org.apache.ctakes.core.fsm.state.
NamedState
exit()
- Method in class org.apache.ctakes.core.fsm.state.
NonTerminalEndState
exit()
- Method in class org.apache.ctakes.drugner.fsm.states.util.
IndentStartState
extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation)
- Method in class org.apache.ctakes.relationextractor.ae.features.
ArgumentOrderFeatureExtractor
extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation)
- Method in class org.apache.ctakes.relationextractor.ae.features.
DependencyPathFeaturesExtractor
extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation)
- Method in class org.apache.ctakes.relationextractor.ae.features.
DependencyTreeFeaturesExtractor
extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation)
- Method in class org.apache.ctakes.relationextractor.ae.features.
EntitySpanFeatureExtractor
extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation)
- Method in class org.apache.ctakes.relationextractor.ae.features.
NamedEntityFeaturesExtractor
extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation)
- Method in class org.apache.ctakes.relationextractor.ae.features.
PartOfSpeechFeaturesExtractor
extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation)
- Method in class org.apache.ctakes.relationextractor.ae.features.
PhraseChunkingExtractor
extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation)
- Method in class org.apache.ctakes.relationextractor.ae.features.
PrepositionFeatureExtractor
extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation)
- Method in class org.apache.ctakes.relationextractor.ae.features.
PunctuationFeatureExtractor
extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation)
- Method in interface org.apache.ctakes.relationextractor.ae.features.
RelationFeaturesExtractor
Extract features for the pair of named entity mentions.
extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation)
- Method in class org.apache.ctakes.relationextractor.ae.features.
TokenFeaturesExtractor
extractForNode(JCas, IdentifiedAnnotation, String)
- Method in class org.apache.ctakes.relationextractor.ae.features.
DependencyTreeFeaturesExtractor
ExtractionPrepAnnotator
- Class in
org.apache.ctakes.clinicalpipeline.ae
UIMA annotator that prepares the CAS for output - performs some (final) updates to the CAS
ExtractionPrepAnnotator()
- Constructor for class org.apache.ctakes.clinicalpipeline.ae.
ExtractionPrepAnnotator
extractPathEnclosedTree(TreebankNode, TreebankNode, JCas)
- Static method in class org.apache.ctakes.constituency.parser.treekernel.
TreeExtractor
extractPathTree(TreebankNode, TreebankNode)
- Static method in class org.apache.ctakes.constituency.parser.treekernel.
TreeExtractor
extractPhraseHeadByTreenode(JCas, List<TreebankNode>)
- Method in class org.apache.ctakes.relationextractor.ae.features.
PhraseChunkingExtractor
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