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O
O
- Class in
org.apache.ctakes.typesystem.type.syntax
Updated by JCasGen Tue Apr 09 11:44:39 EDT 2013 XML source:apache-ctakes-3-0-0/ctakes-pad-term-spotter/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml
O()
- Constructor for class org.apache.ctakes.typesystem.type.syntax.
O
Never called.
O(int, TOP_Type)
- Constructor for class org.apache.ctakes.typesystem.type.syntax.
O
Internal - constructor used by generator
O(JCas)
- Constructor for class org.apache.ctakes.typesystem.type.syntax.
O
O(JCas, int, int)
- Constructor for class org.apache.ctakes.typesystem.type.syntax.
O
O_Type
- Class in
org.apache.ctakes.typesystem.type.syntax
Updated by JCasGen Tue Apr 09 11:44:40 EDT 2013
O_Type(JCas, Type)
- Constructor for class org.apache.ctakes.typesystem.type.syntax.
O_Type
initialize variables to correspond with Cas Type and Features
ODIEVectorFileWriter
- Class in
org.apache.ctakes.coreference.cc
ODIEVectorFileWriter()
- Constructor for class org.apache.ctakes.coreference.cc.
ODIEVectorFileWriter
OffsetComparator
- Class in
org.apache.ctakes.core.nlp.tokenizer
Sorts Token objects by their offset.
OffsetComparator()
- Constructor for class org.apache.ctakes.core.nlp.tokenizer.
OffsetComparator
OINTMENT
- Static variable in class org.apache.ctakes.drugner.elements.
FormElement
OntologyConcept
- Class in
org.apache.ctakes.typesystem.type.refsem
Ontologies (e.g., SNOMED-CT) provide an expert semantic representation for concepts.
OntologyConcept()
- Constructor for class org.apache.ctakes.typesystem.type.refsem.
OntologyConcept
Never called.
OntologyConcept(int, TOP_Type)
- Constructor for class org.apache.ctakes.typesystem.type.refsem.
OntologyConcept
Internal - constructor used by generator
OntologyConcept(JCas)
- Constructor for class org.apache.ctakes.typesystem.type.refsem.
OntologyConcept
OntologyConcept_Type
- Class in
org.apache.ctakes.typesystem.type.refsem
Ontologies (e.g., SNOMED-CT) provide an expert semantic representation for concepts.
OntologyConcept_Type(JCas, Type)
- Constructor for class org.apache.ctakes.typesystem.type.refsem.
OntologyConcept_Type
initialize variables to correspond with Cas Type and Features
OpenNLPPOSCollectionReader
- Class in
org.apache.ctakes.postagger
This collection reader reads in part-of-speech training/test data in the OpenNLP format.
OpenNLPPOSCollectionReader()
- Constructor for class org.apache.ctakes.postagger.
OpenNLPPOSCollectionReader
OpenNLPPOSCollectionReaderTests
- Class in
org.apache.ctakes.postagger.test
OpenNLPPOSCollectionReaderTests()
- Constructor for class org.apache.ctakes.postagger.test.
OpenNLPPOSCollectionReaderTests
OR_RELATION
- Static variable in class org.apache.ctakes.dictionary.lookup.filter.
PostLookupFilterGroupImpl
ORAL
- Static variable in class org.apache.ctakes.drugner.elements.
RouteElement
ORAL
- Static variable in class org.apache.ctakes.drugner.fsm.output.elements.
RouteToken
OrangeBookFilterConsumerImpl
- Class in
org.apache.ctakes.dictionary.lookup.ae
Implementation that takes Rxnorm dictionary lookup hits and stores only the ones that are also present in the Orange Book.
OrangeBookFilterConsumerImpl(UimaContext, Properties, int)
- Constructor for class org.apache.ctakes.dictionary.lookup.ae.
OrangeBookFilterConsumerImpl
OrangeBookFilterConsumerImpl(UimaContext, Properties)
- Constructor for class org.apache.ctakes.dictionary.lookup.ae.
OrangeBookFilterConsumerImpl
org.apache.ctakes.assertion.attributes
- package org.apache.ctakes.assertion.attributes
org.apache.ctakes.assertion.attributes.generic
- package org.apache.ctakes.assertion.attributes.generic
org.apache.ctakes.assertion.attributes.subject
- package org.apache.ctakes.assertion.attributes.subject
org.apache.ctakes.assertion.eval
- package org.apache.ctakes.assertion.eval
org.apache.ctakes.assertion.medfacts.cleartk
- package org.apache.ctakes.assertion.medfacts.cleartk
org.apache.ctakes.assertion.medfacts.i2b2.api
- package org.apache.ctakes.assertion.medfacts.i2b2.api
org.apache.ctakes.assertion.medfacts.types
- package org.apache.ctakes.assertion.medfacts.types
org.apache.ctakes.chunker.ae
- package org.apache.ctakes.chunker.ae
org.apache.ctakes.chunker.ae.adjuster
- package org.apache.ctakes.chunker.ae.adjuster
org.apache.ctakes.clinicalpipeline.ae
- package org.apache.ctakes.clinicalpipeline.ae
org.apache.ctakes.constituency.parser.ae
- package org.apache.ctakes.constituency.parser.ae
org.apache.ctakes.constituency.parser.treekernel
- package org.apache.ctakes.constituency.parser.treekernel
org.apache.ctakes.constituency.parser.uima.co
- package org.apache.ctakes.constituency.parser.uima.co
org.apache.ctakes.constituency.parser.uima.type
- package org.apache.ctakes.constituency.parser.uima.type
org.apache.ctakes.constituency.parser.util
- package org.apache.ctakes.constituency.parser.util
org.apache.ctakes.contexttokenizer.ae
- package org.apache.ctakes.contexttokenizer.ae
org.apache.ctakes.core.ae
- package org.apache.ctakes.core.ae
org.apache.ctakes.core.cc
- package org.apache.ctakes.core.cc
org.apache.ctakes.core.ci
- package org.apache.ctakes.core.ci
org.apache.ctakes.core.cr
- package org.apache.ctakes.core.cr
org.apache.ctakes.core.fsm.adapters
- package org.apache.ctakes.core.fsm.adapters
This package contains adapters for JCas token objects comforming to the input interfaces used by the FSM project.
org.apache.ctakes.core.fsm.condition
- package org.apache.ctakes.core.fsm.condition
org.apache.ctakes.core.fsm.machine
- package org.apache.ctakes.core.fsm.machine
org.apache.ctakes.core.fsm.output
- package org.apache.ctakes.core.fsm.output
org.apache.ctakes.core.fsm.state
- package org.apache.ctakes.core.fsm.state
org.apache.ctakes.core.fsm.token
- package org.apache.ctakes.core.fsm.token
org.apache.ctakes.core.fsm.token.adapter
- package org.apache.ctakes.core.fsm.token.adapter
org.apache.ctakes.core.knowtator
- package org.apache.ctakes.core.knowtator
org.apache.ctakes.core.nlp.tokenizer
- package org.apache.ctakes.core.nlp.tokenizer
org.apache.ctakes.core.resource
- package org.apache.ctakes.core.resource
org.apache.ctakes.core.sentence
- package org.apache.ctakes.core.sentence
org.apache.ctakes.core.util
- package org.apache.ctakes.core.util
org.apache.ctakes.coreference.ae
- package org.apache.ctakes.coreference.ae
org.apache.ctakes.coreference.cc
- package org.apache.ctakes.coreference.cc
org.apache.ctakes.coreference.eval.helpers
- package org.apache.ctakes.coreference.eval.helpers
org.apache.ctakes.coreference.treekernel.training
- package org.apache.ctakes.coreference.treekernel.training
org.apache.ctakes.coreference.type
- package org.apache.ctakes.coreference.type
org.apache.ctakes.coreference.util
- package org.apache.ctakes.coreference.util
org.apache.ctakes.dependency.parser
- package org.apache.ctakes.dependency.parser
org.apache.ctakes.dependency.parser.ae
- package org.apache.ctakes.dependency.parser.ae
org.apache.ctakes.dependency.parser.ae.util
- package org.apache.ctakes.dependency.parser.ae.util
org.apache.ctakes.dependency.parser.cr
- package org.apache.ctakes.dependency.parser.cr
org.apache.ctakes.dependency.parser.util
- package org.apache.ctakes.dependency.parser.util
org.apache.ctakes.dictionary.lookup
- package org.apache.ctakes.dictionary.lookup
org.apache.ctakes.dictionary.lookup.ae
- package org.apache.ctakes.dictionary.lookup.ae
org.apache.ctakes.dictionary.lookup.algorithms
- package org.apache.ctakes.dictionary.lookup.algorithms
org.apache.ctakes.dictionary.lookup.filter
- package org.apache.ctakes.dictionary.lookup.filter
org.apache.ctakes.dictionary.lookup.jdbc
- package org.apache.ctakes.dictionary.lookup.jdbc
org.apache.ctakes.dictionary.lookup.lucene
- package org.apache.ctakes.dictionary.lookup.lucene
org.apache.ctakes.dictionary.lookup.phrasebuilder
- package org.apache.ctakes.dictionary.lookup.phrasebuilder
org.apache.ctakes.dictionary.lookup.strtable
- package org.apache.ctakes.dictionary.lookup.strtable
org.apache.ctakes.dictionary.lookup.vo
- package org.apache.ctakes.dictionary.lookup.vo
org.apache.ctakes.drugner.ae
- package org.apache.ctakes.drugner.ae
org.apache.ctakes.drugner.ae.impl
- package org.apache.ctakes.drugner.ae.impl
org.apache.ctakes.drugner.cc
- package org.apache.ctakes.drugner.cc
org.apache.ctakes.drugner.elements
- package org.apache.ctakes.drugner.elements
org.apache.ctakes.drugner.fsm.elements.conditions
- package org.apache.ctakes.drugner.fsm.elements.conditions
org.apache.ctakes.drugner.fsm.machines.elements
- package org.apache.ctakes.drugner.fsm.machines.elements
org.apache.ctakes.drugner.fsm.machines.util
- package org.apache.ctakes.drugner.fsm.machines.util
org.apache.ctakes.drugner.fsm.output.elements
- package org.apache.ctakes.drugner.fsm.output.elements
org.apache.ctakes.drugner.fsm.output.util
- package org.apache.ctakes.drugner.fsm.output.util
org.apache.ctakes.drugner.fsm.states.util
- package org.apache.ctakes.drugner.fsm.states.util
org.apache.ctakes.drugner.type
- package org.apache.ctakes.drugner.type
org.apache.ctakes.lvg.ae
- package org.apache.ctakes.lvg.ae
org.apache.ctakes.lvg.resource
- package org.apache.ctakes.lvg.resource
org.apache.ctakes.necontexts
- package org.apache.ctakes.necontexts
org.apache.ctakes.necontexts.negation
- package org.apache.ctakes.necontexts.negation
org.apache.ctakes.necontexts.status
- package org.apache.ctakes.necontexts.status
org.apache.ctakes.padtermspotter.ae
- package org.apache.ctakes.padtermspotter.ae
org.apache.ctakes.padtermspotter.cc
- package org.apache.ctakes.padtermspotter.cc
org.apache.ctakes.padtermspotter.cr
- package org.apache.ctakes.padtermspotter.cr
org.apache.ctakes.padtermspotter.fsm.output
- package org.apache.ctakes.padtermspotter.fsm.output
org.apache.ctakes.padtermspotter.fsm.pad.machine
- package org.apache.ctakes.padtermspotter.fsm.pad.machine
org.apache.ctakes.padtermspotter.impl
- package org.apache.ctakes.padtermspotter.impl
org.apache.ctakes.padtermspotter.type
- package org.apache.ctakes.padtermspotter.type
org.apache.ctakes.padtermspotter.util
- package org.apache.ctakes.padtermspotter.util
org.apache.ctakes.postagger.test
- package org.apache.ctakes.postagger.test
org.apache.ctakes.preprocessor
- package org.apache.ctakes.preprocessor
org.apache.ctakes.preprocessor.ae
- package org.apache.ctakes.preprocessor.ae
org.apache.ctakes.preprocessor.test
- package org.apache.ctakes.preprocessor.test
org.apache.ctakes.relationextractor.ae
- package org.apache.ctakes.relationextractor.ae
org.apache.ctakes.relationextractor.ae.features
- package org.apache.ctakes.relationextractor.ae.features
org.apache.ctakes.relationextractor.cr
- package org.apache.ctakes.relationextractor.cr
org.apache.ctakes.relationextractor.data
- package org.apache.ctakes.relationextractor.data
org.apache.ctakes.relationextractor.eval
- package org.apache.ctakes.relationextractor.eval
org.apache.ctakes.relationextractor.knowtator
- package org.apache.ctakes.relationextractor.knowtator
org.apache.ctakes.relationextractor.pipelines
- package org.apache.ctakes.relationextractor.pipelines
org.apache.ctakes.sideeffect.ae
- package org.apache.ctakes.sideeffect.ae
org.apache.ctakes.sideeffect.cc
- package org.apache.ctakes.sideeffect.cc
org.apache.ctakes.sideeffect.type
- package org.apache.ctakes.sideeffect.type
org.apache.ctakes.sideeffect.util
- package org.apache.ctakes.sideeffect.util
org.apache.ctakes.smokingstatus.ae
- package org.apache.ctakes.smokingstatus.ae
org.apache.ctakes.smokingstatus.cc
- package org.apache.ctakes.smokingstatus.cc
org.apache.ctakes.smokingstatus.context
- package org.apache.ctakes.smokingstatus.context
org.apache.ctakes.smokingstatus.context.negation
- package org.apache.ctakes.smokingstatus.context.negation
org.apache.ctakes.smokingstatus.i2b2.type
- package org.apache.ctakes.smokingstatus.i2b2.type
org.apache.ctakes.smokingstatus.lookup.ae
- package org.apache.ctakes.smokingstatus.lookup.ae
org.apache.ctakes.smokingstatus.machine
- package org.apache.ctakes.smokingstatus.machine
org.apache.ctakes.smokingstatus.MLutil
- package org.apache.ctakes.smokingstatus.MLutil
org.apache.ctakes.smokingstatus.patientLevel
- package org.apache.ctakes.smokingstatus.patientLevel
org.apache.ctakes.smokingstatus.type
- package org.apache.ctakes.smokingstatus.type
org.apache.ctakes.smokingstatus.type.libsvm
- package org.apache.ctakes.smokingstatus.type.libsvm
org.apache.ctakes.smokingstatus.util
- package org.apache.ctakes.smokingstatus.util
org.apache.ctakes.typesystem.type.constants
- package org.apache.ctakes.typesystem.type.constants
org.apache.ctakes.typesystem.type.refsem
- package org.apache.ctakes.typesystem.type.refsem
org.apache.ctakes.typesystem.type.relation
- package org.apache.ctakes.typesystem.type.relation
org.apache.ctakes.typesystem.type.structured
- package org.apache.ctakes.typesystem.type.structured
org.apache.ctakes.typesystem.type.syntax
- package org.apache.ctakes.typesystem.type.syntax
org.apache.ctakes.typesystem.type.textsem
- package org.apache.ctakes.typesystem.type.textsem
org.apache.ctakes.typesystem.type.textspan
- package org.apache.ctakes.typesystem.type.textspan
org.apache.ctakes.typesystem.type.util
- package org.apache.ctakes.typesystem.type.util
org.apache.ctakes.utils.build
- package org.apache.ctakes.utils.build
org.apache.ctakes.utils.env
- package org.apache.ctakes.utils.env
org.apache.ctakes.utils.kernel
- package org.apache.ctakes.utils.kernel
org.apache.ctakes.utils.test
- package org.apache.ctakes.utils.test
org.apache.ctakes.utils.tree
- package org.apache.ctakes.utils.tree
org.apache.ctakes.utils.xcas_comparison
- package org.apache.ctakes.utils.xcas_comparison
organizeByOffset(Iterator)
- Method in class org.apache.ctakes.dictionary.lookup.ae.
BaseLookupConsumerImpl
Organizes the LookupHit objects by begin and end offsets.
OS_NAME
- Static variable in class org.apache.ctakes.padtermspotter.cc.
PADOffSetsRecord
OS_WINDOWS
- Static variable in class org.apache.ctakes.padtermspotter.cc.
PADOffSetsRecord
OTHER
- Static variable in class org.apache.ctakes.drugner.elements.
FrequencyUnitElement
OTHER
- Static variable in class org.apache.ctakes.drugner.fsm.output.elements.
DrugChangeStatusToken
otherVerb
- Variable in class org.apache.ctakes.coreference.ae.
MipacqMarkableCreator
out
- Variable in class org.apache.ctakes.constituency.parser.uima.co.
ParserTreeWriterConsumer
OUTCOME1
- Variable in class org.apache.ctakes.relationextractor.data.
CategoricalDistribution
OUTCOME2
- Variable in class org.apache.ctakes.relationextractor.data.
CategoricalDistribution
OUTCOME3
- Variable in class org.apache.ctakes.relationextractor.data.
CategoricalDistribution
outputDirectory
- Variable in class org.apache.ctakes.relationextractor.pipelines.
RelationExtractorPipeline.Options
outputRoot
- Variable in class org.apache.ctakes.dependency.parser.ae.util.
WriteClearParserDescriptors.Options
outputRoot
- Variable in class org.apache.ctakes.relationextractor.eval.
PreprocessAndWriteXmi.Options
outputRoot
- Variable in class org.apache.ctakes.relationextractor.pipelines.
GoldEntityAndRelationReaderPipeline
OVERLAP_A_ENV_B
- Static variable in class org.apache.ctakes.core.ae.
OverlapAnnotator
A completely envelopes B
OVERLAP_B_ENV_A
- Static variable in class org.apache.ctakes.core.ae.
OverlapAnnotator
B completely envelopes A
OVERLAP_EXACT
- Static variable in class org.apache.ctakes.core.ae.
OverlapAnnotator
A and B have identical offsets
OVERLAP_NONE
- Static variable in class org.apache.ctakes.core.ae.
OverlapAnnotator
No overlap at all between A and B
OVERLAP_PARTIAL
- Static variable in class org.apache.ctakes.core.ae.
OverlapAnnotator
A and B only partially overlap
OverlapAnnotator
- Class in
org.apache.ctakes.core.ae
OverlapAnnotator()
- Constructor for class org.apache.ctakes.core.ae.
OverlapAnnotator
OverlapAnnotator.Action
- Interface in
org.apache.ctakes.core.ae
Generic interface for performing an action if the overlap constraint is met between annotations A and B.
OverlapAnnotator.DeleteActionImpl
- Class in
org.apache.ctakes.core.ae
Implementation that deletes either the A, B, or both.
OverlapAnnotator.DeleteActionImpl(byte)
- Constructor for class org.apache.ctakes.core.ae.
OverlapAnnotator.DeleteActionImpl
OverlapAnnotator.ModifyActionImpl
- Class in
org.apache.ctakes.core.ae
Implementation that modifies feature values of either annotation A or B.
OverlapAnnotator.ModifyActionImpl(byte, byte, byte)
- Constructor for class org.apache.ctakes.core.ae.
OverlapAnnotator.ModifyActionImpl
Overview
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