org.apache.uima.java
false
ODIE SVM Vector Creator
Runs the complete pipeline for annotating clinical documents in plain text format, and create coreference vectors.
SegmentID
String
false
false
SimpleSegmentAnnotator/SegmentID
ChunkCreatorClass
String
false
true
Chunker/ChunkCreatorClass
outputDir
Where the files will be written to
String
false
true
ODIEVectorFileWriterCasConsumer/outputDir
goldStandardDir
String
false
true
ODIEVectorFileWriterCasConsumer/goldStandardDir
writeVectors
Should the consumer print out the vector pairs for the coreferent markables?
Boolean
false
true
ODIEVectorFileWriterCasConsumer/writeVectors
writeTrees
Boolean
false
true
ODIEVectorFileWriterCasConsumer/writeTrees
ChunkCreatorClass
org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator
outputDir
change me
goldStandardDir
chang me
writeVectors
true
writeTrees
false
SectionSegmentAnnotator
SentenceDetectorAnnotator
TokenizerAnnotator
LvgAnnotator
ContextDependentTokenizerAnnotator
POSTagger
Chunker
LookupWindowAnnotator
DictionaryLookupAnnotatorUMLS
StatusAnnotator
NegationAnnotator
ConstituencyParserAnnotator
MipacqMarkableCreator
MipacqMarkableExpander
MipacqMarkablePairGenerator
ODIEVectorFileWriterCasConsumer
SectionSegmentAnnotator
Ordering
For subiterator
1.0
org.apache.ctakes.typesystem.type.textspan.Segment
org.apache.ctakes.typesystem.type.textspan.Sentence
org.apache.ctakes.typesystem.type.syntax.BaseToken
org.apache.ctakes.typesystem.type.textspan.Sentence
org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
true
true
false