All Classes

AbstractClassifier ADJP ADJP_Type ADVP ADVP_Type Affects Affects_Type AnaphoricityAttributeCalculator AnatomicalSite AnatomicalSite_Type Annotation AnnotationCounter AnnotationSelector AnnotationTreeUtils AnnotOffsetComparator ArgumentInfo ArgumentOrderFeatureExtractor Assertion Assertion_Type AssertionAnalysisEngine AssertionCleartkAnalysisEngine AssertionComponents AssertionEvalBasedOnModifier AssertionEvalBasedOnModifier.OnlyGoldAssertions AssertionEvalBasedOnModifier.Options AssertionEvalBasedOnModifier.ReferenceAnnotationsSystemAssertionClearer AssertionEvalBasedOnModifier.ReferenceIdentifiedAnnotationsSystemToGoldCopier AssertionEvalBasedOnModifier.ReferenceSupportingAnnotationsSystemToGoldCopier AssertionEvalBasedOnModifier.ReplaceCTakesEntityMentionsAndModifiersWithGold AssertionEvalBasedOnModifier.ReplaceGoldEntityMentionsAndModifiersWithCTakes AssociatedCodeElement AssociatedCodeToken AssociatedPrimaryCodeElement AssociatedSecondaryCodeElement Attribute Attribute_Type AttributeCalculator AttributeRelation AttributeRelation_Type AttributeValue AttributeValue_Type B3Type BaseDictionaryImpl BaseLookupConsumerImpl BaseMetaDataHitImpl BaseToken BaseToken BaseToken_Type BaseTokenAdapter BaseTokenAdapter BaseTokenImpl BaseTokenImpl BinaryTextRelation BinaryTextRelation_Type BodyLaterality BodyLaterality_Type BodySide BodySide_Type BooleanLabeledFS BooleanLabeledFS_Type BooleanLabeledTree BooleanLabeledTree_Type BuildPear BuildPipelinePears CasConsumer CASConsumerTestDriver CasIndexer CategoricalDistribution CdaCasInitializer CEAFType CharacterOffsetToLineTokenConverterCtakesImpl CharacterToken CharacterTokenAdapter CharacterTokenAdapter Chunk Chunk_Type ChunkAdjuster ChunkAnnotation ChunkAnnotation_Type ChunkCreator Chunker ClassifiableEntries ClassifiableEntry ClearDependencyUtility ClearParserDependencyParserAE ClearParserSemanticRoleLabelerAE ClearParserUtil ClinicalNotePreProcessor ClinicalNotePreProcessorTest CollectionFilter CollectionTextRelation CollectionTextRelation_Type CombineCondition CommandLineParserUtil Compare Concept Concept_Type ConceptConverterAnalysisEngine ConceptLookup ConfidenceScoreElement ConfidenceScoreToken CONJP CONJP_Type ConllDependencyNode ConllDependencyNode_Type Const CONST Const Constants Constants ConstituencyParser ConstraintConstructor ConstraintConstructorFindContainedBy ConstraintConstructorFindContainedWithin ConsumeNamedEntityRecordModel ContainsSetTextValueCondition ContextAnalyzer ContextAnalyzerAdapter ContextAnnotation ContextAnnotation_Type ContextAnnotator ContextAnnotatorTests ContextDependentTokenizerAnnotator ContextHit ContextHitConsumer ContextHitConsumerAdapter ContractionResult ContractionsPTB ContractionToken ContractionToken ContractionToken_Type ContractionTokenAdapter ConvertAndCompare Converti2b2AnnotationsToCTAKES ConvertXMIAssertionsToi2b2Format CopyAnnotator CopyDrugAnnotator CorefConsts CoreferenceRelation CoreferenceRelation_Type Course Course_Type CpeTests Date Date_Type DateAnnotation DateAnnotation_Type DateAttributeValue DateAttributeValue_Type DateFSM DateParser DateToken DayNightWordCondition DebugConsumerImpl DecimalCondition DecimalRangeCondition DecimalStrengthAnnotation DecimalStrengthAnnotation_Type DecimalStrengthFSM DecimalStrengthStatusCondition DecimalStrengthToken DecimalToken DecimalTokenAdapter DecimalTokenAdapter DecimalValueCondition DefaultChunkCreator DegreeOf DegreeOf_Type DegreeOfRelationExtractorAnnotator Delim DemMarkable DemMarkable_Type Demographics Demographics_Type DependencyFileCollectionReader DependencyNodeWriter DependencyParseUtils DependencyPath DependencyPathFeaturesExtractor DependencyRegex DependencyTreeFeaturesExtractor DependencyUtility Dictionary DictionaryEngine DictionaryException DictionaryLookupAnnotator DirectLookupInitializerImpl DirectPassThroughImpl DiseaseDisorder DiseaseDisorder_Type DisjoinCondition DocumentID DocumentID DocumentID_Type DocumentID_Type DocumentIDAnnotationUtil DocumentMetaData DocumentSection DosageCondition DosageElement DosagesAnnotation DosagesAnnotation_Type DosagesFSM DosageToken DrugChangeStatusAnnotation DrugChangeStatusAnnotation_Type DrugChangeStatusCondition DrugChangeStatusElement DrugChangeStatusFSM DrugChangeStatusToken DrugLookupWindowAnnotation DrugLookupWindowAnnotation_Type DrugMention DrugMentionAnnotation DrugMentionAnnotation_Type DrugMentionAnnotator DrugModel DTDloader DurationAnnotation DurationAnnotation_Type DurationElement DurationFSM DurationToken DxContextAnalyzerImpl DxContextHitConsumerImpl DxIndicatorFSM EditDistance Element Element_Type ElementRelation ElementRelation_Type EndOfSentenceScannerImpl Entity Entity_Type EntityMention EntityMention_Type EntityMentionPairRelationExtractorAnnotator EntitySpanFeatureExtractor EnvironmentVariable EolToken Event Event_Type EventMention EventMention_Type EventProperties EventProperties_Type ExtractionPrepAnnotator FeatureVector FieldConstraint FieldConstraintImpl FileLocator FileResource FileResourceImpl FilesInDirectoryCasConsumer FilesInDirectoryCollectionCyclicalReads FilesInDirectoryCollectionReader FilterAnnotator FilterException FirstTokenPermLookupInitializerImpl FirstTokenPermutationImpl FormAnnotation FormAnnotation_Type FormCondition FormElement FormFSM FormToken FractionAnnotation FractionAnnotation_Type FractionCondition FractionFSM FractionStrengthAnnotation FractionStrengthAnnotation_Type FractionStrengthCondition FractionStrengthFSM FractionStrengthToken FractionToken FractionToken FragmentUtils FrequencyAnnotation FrequencyAnnotation_Type FrequencyElement FrequencyFSM FrequencyToken FrequencyUnitAnnotation FrequencyUnitAnnotation_Type FrequencyUnitCondition FrequencyUnitElement FrequencyUnitFSM FrequencyUnitToken FSIteratorToList FSM FSUtil GenerateTrainingData GenericAttributeAnalysisEngine GenericAttributeClassifier GenericMetaDataHitImpl GoldEntityAndRelationReader GoldEntityAndRelationReaderPipeline GoldEntityReader GoldStandardLabeler HobbsTreeNavigator HourMinuteCondition HtmlTableCasConsumer HyphenatedDrugFSM HyphenatedDrugToken HyphenatedPTB HyphenTextModifierImpl HyphenTextModifierImplTests IdentifiedAnnotation IdentifiedAnnotation_Type IllnessDxIndicator IndentStartState InstallPearSilently InstallPearSilently.RunInstallation InstallPipelineFromPears IntegerCondition IntegerRange IntegerRangeCondition IntegerToken IntegerTokenAdapter IntegerTokenAdapter IntegerValueCondition INTJ INTJ_Type JCasUtil JCasUtil JdbcCollectionReader JdbcConnectionResource JdbcConnectionResourceImpl JdbcDictionaryImpl KAlphaType Kernel KernelMatrixCompositor KnowtatorAnnotation KnowtatorAnnotation.Span KnowtatorXMLParser KuRuleBasedClassifierAnnotator Lab Lab_Type LabDeltaFlag LabDeltaFlag_Type LabReferenceRange LabReferenceRange_Type LabValue LabValue_Type LemAssigner Lemma Lemma_Type LinearKernel LinearKernelMatrixWriter LinesFromFileCollectionReader LinesFromFileStringsResourceImpl List List_Type ListFactory LocationOf LocationOf_Type LookupAlgorithm LookupAnnotation LookupAnnotationToJCasAdapter LookupAnnotationToTokAdapter LookupConsumer LookupHit LookupInitializer LookupParseUtilities LookupSpec LookupToken LookupTokenComparator LookupWindowAnnotation LookupWindowAnnotation_Type LST LST_Type LuceneDictionaryImpl LuceneDocumentMetaDataHitImpl LuceneIndexReaderResource LuceneIndexReaderResourceImpl LvgAnnotator LvgBaseTokenAnnotator LvgCmdApiResource LvgCmdApiResourceImpl ManifestationOf ManifestationOf_Type Mapper Markable Markable_Type MarkableDepUtils MarkablePair MarkablePair_Type MarkablePairSet MarkablePairSet_Type MarkableProb MarkableTreeUtils MatType MaxentModelResource MaxentParserWrapper MeasurementAnnotation MeasurementAnnotation_Type MeasurementFSM MeasurementToken Medication Medication_Type MedicationDosage MedicationDosage_Type MedicationDuration MedicationDuration_Type MedicationEventMention MedicationEventMention_Type MedicationForm MedicationForm_Type MedicationFrequency MedicationFrequency_Type MedicationRoute MedicationRoute_Type MedicationStatusChange MedicationStatusChange_Type MedicationStrength MedicationStrength_Type Metadata Metadata_Type MetaDataHit MetaDataHitComparator MetaDataHitConst MetaDataPostLookupFilterImpl MetaHeader MetaHeader_Type MipacqMarkableCreator MipacqMarkableExpander MipacqMarkablePairGenerator MipacqSvmChainCreator Modifier Modifier_Type ModifierExtractorAnnotator ModifierExtractorEvaluation ModifierExtractorEvaluation.OnlyGoldModifiers ModifierExtractorEvaluation.Options NamedEntityContextAnalyzer NamedEntityContextAnalyzer NamedEntityContextHitConsumer NamedEntityFeaturesExtractor NamedEntityFeaturesExtractorTest NamedEntityLookupConsumerImpl NamedState NegateCondition NegationAnnotatorTests NegationContextAnalyzer NegationContextAnalyzer NegationContextHitConsumer NegationFSM NegationFSM NegationIndicator NegativeContextAnalyzerImpl NegativeContextHitConsumerImpl NegContextInitializerImpl NegDxIndicatorFSM NegIndicatorFSM NEMarkable NEMarkable_Type NewlineToken NewlineToken_Type NewlineTokenAdapter NominalAttributeValue NominalAttributeValue_Type NonIndicator NonIndicatorFSM NonSmokerNamedEntityAnnotation NonSmokerNamedEntityAnnotation_Type NonSmokerNamedEntityLookupConsumerImpl NonTerminalConsumer NonTerminalEndState NormalizedFilesInDirectoryCasConsumer NP NP_Type NullAnnotator NumberCondition NumberToken NumberTokenAdapter NumberTokenAdapter NumericAttributeValue NumericAttributeValue_Type NumToken NumToken_Type O O_Type ODIEVectorFileWriter OffsetComparator OntologyConcept OntologyConcept_Type OpenNLPPOSCollectionReader OpenNLPPOSCollectionReaderTests OrangeBookFilterConsumerImpl OverlapAnnotator OverlapAnnotator.Action PADConsumerImpl PADHit PADHit_Type PADHitAnnotator PADLocation PADLocation_Type PADLocationConsumerImpl PADOffSetsRecord PADTerm PADTerm_Type PADTermConsumerImpl Pair Pair Pair_Type Pair_Type PairAttributeCalculator Pairs Pairs_Type PairType Paragraph Paragraph_Type ParamUtil ParentPtrTree ParserEvaluationAnnotator ParserTreeWriterConsumer ParserWrapper PartOfSpeechFeaturesExtractor PatientLevelSmokingStatus PatternMatch PcsClassifierAnnotator_libsvm PermutationUtil PersonTitleAnnotation PersonTitleAnnotation_Type PersonTitleFSM PersonTitleToken PhraseBuilder PhraseChunkingExtractor PhraseTypeChunkCreator PolyKernel PosAssigner POSTagger POSTaggerTests PostLookupFilter PostLookupFilterGroupImpl PP PP_Type Predicate Predicate_Type PreLookupFilter PrepositionFeatureExtractor PreprocessAndWriteXmi PreprocessAndWriteXmi.CopyDocumentTextToGoldView PreprocessAndWriteXmi.DocumentIDAnnotator PreprocessAndWriteXmi.Options PreprocessAndWriteXmi.SerializeDocumentToXMI PreProcessor PrintRelationStatistics PrintRelationStatistics.Options ProbabilityDistribution ProbabilityDistribution_Type Procedure Procedure_Type ProcedureDevice ProcedureDevice_Type ProcedureMethod ProcedureMethod_Type PronounMarkable PronounMarkable_Type PRT PRT_Type PSESentence PSESentence_Type PSESentenceAnnotator PSESentenceFeature PSESentenceFeature_Type PunctuationFeatureExtractor PunctuationToken PunctuationToken PunctuationToken_Type PunctuationTokenAdapter PunctuationTokenAdapter PunctuationValueCondition RadialogyTermLookup RadiologyRecordsCollectionReader RangeAnnotation RangeAnnotation_Type RangeCondition RangeDosageCondition RangeFSM RangeStrengthAnnotation RangeStrengthAnnotation_Type RangeStrengthCondition RangeStrengthFSM RangeStrengthToken RangeToken RangeToken RBFKernel RecordResolutionCasConsumer RecordSentence RecordSentence_Type Relation Relation_Type RelationAnnotationAnalysis RelationAnnotationAnalysis.Options RelationArgument RelationArgument_Type RelationExtractorAnnotator RelationExtractorAnnotator.HashableArguments RelationExtractorAnnotator.IdentifiedAnnotationPair RelationExtractorAnnotatorsTest RelationExtractorConsumer RelationExtractorEvaluation RelationExtractorEvaluation.Options RelationExtractorEvaluation.ParameterSettings RelationExtractorEvaluation.ReplaceCTakesEntityMentionsAndModifiersWithGold RelationExtractorEvaluation.ReplaceGoldEntityMentionsAndModifiersWithCTakes RelationExtractorPipeline RelationExtractorPipeline.Options RelationExtractorPipelineSingleCas RelationExtractorTrain RelationExtractorTrain.Options RelationFeaturesExtractor RelationInfo ResolutionAnnotator ResultOf ResultOf_Type RomanNumeralAnnotation RomanNumeralAnnotation_Type RomanNumeralCondition RomanNumeralFSM RomanNumeralToken RouteAnnotation RouteAnnotation_Type RouteCondition RouteElement RouteFSM RouteToken RowFillerThread SBAR SBAR_Type SectionSegmentAnnotator Segment Segment_Type SegmentMetaData SemanticArgument SemanticArgument_Type SemanticRoleRelation SemanticRoleRelation_Type Sentence Sentence_Type SentenceAdjuster SentenceDetector SentenceDetectorCtakes SentenceSpan SESentence SESentence_Type SESentenceClassifierAnnotator SESentenceFeatureAnnotator SetValuePostLookupFilterImpl SEUtil Severity Severity_Type SHARPKnowtatorXMLReader SideEffectAnnotation SideEffectAnnotation_Type SideEffectAnnotator SideEffectCasConsumer SideEffectSentenceCasConsumer SignSymptom SignSymptom_Type SimpleSegmentAnnotator SimpleSegmentAnnotatorTests SimpleSegmentWithTagsAnnotator SimpleTree SingleDocumentProcessorCtakes SmokerNamedEntityAnnotation SmokerNamedEntityAnnotation_Type SmokerNamedEntityLookupConsumerImpl SmokingDocumentClassification SmokingDocumentClassification_Type SourceData SourceData_Type Span Span SpanAlignment SpanOffsetComparator Splitter SRLUtility StanfordDependency StanfordDependency_Type StartDateElement Stats StatusAnnotatorTests StatusContextAnalyzer StatusContextHitConsumer StatusIndicator StatusIndicatorFSM StatusIndicatorFSM StrengthAnnotation StrengthAnnotation_Type StrengthCondition StrengthElement StrengthFSM StrengthToken StrengthUnitAnnotation StrengthUnitAnnotation_Type StrengthUnitCombinedCondition StrengthUnitCombinedToken StrengthUnitCondition StrengthUnitElement StrengthUnitFSM StrengthUnitToken StringAttributeValue StringAttributeValue_Type StringIntegerMapResource StringIntegerMapResourceImpl StringMapResource StringMapResourceImpl StringPreLookupFilterImpl StringsResource StringTable StringTableDictionaryImpl StringTableFactory StringTableRow StringTableRowMetaDataHitImpl SubjectAttributeAnalysisEngine SubjectAttributeClassifier SubSection SubSection_Type SubSectionAnnotation SubSectionAnnotation_Type SubSectionAnnotator SubSectionIndicator SubSectionIndicator SubSectionIndicatorFSM SubSectionPadIdFSM SuffixFrequencyFSM SuffixFrequencyToken SuffixMaxentModelResourceImpl SuffixStrengthAnnotation SuffixStrengthAnnotation_Type SuffixStrengthFSM SuffixStrengthToken SvmUtils SvmVectorCreator SymbolToken SymbolToken SymbolToken_Type SymbolTokenAdapter SymbolValueCondition SyntaxAttributeCalculator TagDictionaryCreator TagDictionaryCreatorTests TemporalRelation TemporalRelation_Type TerminalTreebankNode TerminalTreebankNode_Type Test TestClearParserAnalysisEngines TestClearParserAnalysisEngines.DumpClearParserOutputAE TestClearParserAnalysisEngines.Options TestDriver TestUtil TextMatch TextMentionElement TextModification TextModifier TextSetCondition TextToken TextTokenAdapter TextValueCondition ThreadDelegator Time Time_Type TimeAnnotation TimeAnnotation_Type TimeCondition TimeFSM TimeMention TimeMention_Type TimeToken Token TokenConverter TokenConverter TokenFeaturesExtractor TokenFreqCasConsumer Tokenizer TokenizerAnnotator TokenizerAnnotatorPTB TokenizerAnnotatorPTBTests TokenizerHelper TokenizerPTB TokenOffsetsCasConsumer TopTreebankNode TopTreebankNode_Type TrainAssertionModel TreebankNode TreebankNode_Type TreeExtractor TreeKernel TreeKernelTrainer TreeUtils TruncateCollectionFilterImpl TruthValue UCP UCP_Type UmlsConcept UmlsConcept_Type UmlsDictionaryLookupAnnotator UMLSRelation UMLSRelation_Type UmlsToSnomedConsumerImpl UmlsToSnomedDbConsumerImpl UmlsToSnomedLuceneConsumerImpl UnknownSmokerNamedEntityAnnotation UnknownSmokerNamedEntityAnnotation_Type UnknownSmokerNamedEntityLookupConsumerImpl Utility VariantPhraseBuilderImpl VP VP_Type WordSetCondition WordToken WordToken WordToken_Type WordTokenAdapter WordTokenAdapter WordValueCondition WriteClearParserDescriptors WriteClearParserDescriptors.Options XcasAnnotation XcasDiff XcasFile XcasProcessor XMIReader XMIReader XMIReader XMLReader