org.apache.uima.java
true
edu.mayo.bmi.uima.lookup.ae.UmlsDictionaryLookupAnnotator
UmlsDictionaryLookupAnnotator
Mayo
maxListSize
Specifies the maximum number of items to be returned
from an lucene query.
Integer
false
false
UMLSAddr
A UMLS is required to use the UMLS Dictionary.
Address to verify UMLS License. If you do not have one,
Please request one at: https://uts.nlm.nih.gov/license.html
String
false
true
UMLSVendor
UMLS Vendor ID
String
false
true
UMLSUser
UMLS User Name
String
false
true
UMLSPW
UMLS Password
String
false
true
maxListSize
2147483647
UMLSAddr
https://uts-ws.nlm.nih.gov/restful/isValidUMLSUser
UMLSVendor
NLM-6515182895
UMLSUser
YOUR_UMLS_USERNAME_HERE
UMLSPW
YOUR_UMLS_PASSWORD_HERE
edu.mayo.bmi.uima.core.type.syntax.BaseToken
edu.mayo.bmi.uima.core.type.textspan.LookupWindowAnnotation
edu.mayo.bmi.uima.lookup.type.IdentifiedAnnotation
true
true
false
LookupDescriptor
edu.mayo.bmi.uima.core.resource.FileResource
false
DbConnection
edu.mayo.bmi.uima.core.resource.JdbcConnectionResource
false
RxnormIndexReader
edu.mayo.bmi.uima.core.resource.LuceneIndexReaderResource
false
OrangeBookIndexReader
edu.mayo.bmi.uima.core.resource.LuceneIndexReaderResource
false
CsvSE
edu.mayo.bmi.uima.core.resource.FileResource
false
LookupDescriptorFile
file:sideeffectresources/lookup/LookupDesc_sideEffectUMLS.xml
edu.mayo.bmi.uima.core.resource.FileResourceImpl
DbConnectionResrc
DriverClassName
String
false
true
URL
String
false
true
Username
String
false
true
Password
String
false
true
DriverClassName
org.hsqldb.jdbcDriver
URL
jdbc:hsqldb:file:resources/lookupresources/lookup/umls2011ab/umls
Username
SA
Password
edu.mayo.bmi.uima.core.resource.JdbcConnectionResourceImpl
RxnormIndex
UseMemoryIndex
Boolean
false
true
IndexDirectory
String
false
true
UseMemoryIndex
true
IndexDirectory
lookupresources/lookup/rxnorm_index
edu.mayo.bmi.uima.core.resource.LuceneIndexReaderResourceImpl
OrangeBookIndex
UseMemoryIndex
Boolean
false
true
IndexDirectory
String
false
true
UseMemoryIndex
true
IndexDirectory
lookupresources/lookup/OrangeBook
edu.mayo.bmi.uima.core.resource.LuceneIndexReaderResourceImpl
CsvSEFile
supplemental NEs
file:sideeffectresources/lookup/additionalNE_dictionary.csv
edu.mayo.bmi.uima.core.resource.FileResourceImpl
LookupDescriptor
LookupDescriptorFile
DbConnection
DbConnectionResrc
RxnormIndexReader
RxnormIndex
OrangeBookIndexReader
OrangeBookIndex
CsvSE
CsvSEFile