Drug mentions to NERtype system
1.0
Mayo Clinic
edu.mayo.bmi.uima.drugner.type.FrequencyAnnotation
The frequency determination for the Drug NER profile.
uima.tcas.Annotation
edu.mayo.bmi.uima.drugner.type.DurationAnnotation
The duration determination for the Drug NER profile.
uima.tcas.Annotation
edu.mayo.bmi.uima.drugner.type.RouteAnnotation
The route determination for the Drug NER profile.
uima.tcas.Annotation
intakeMethod
Means by which the drug was taken.
uima.cas.String
edu.mayo.bmi.uima.drugner.type.SuffixStrengthAnnotation
The suffix portion of dosage strength determination for the Drug NER profile.
uima.tcas.Annotation
edu.mayo.bmi.uima.drugner.type.FractionStrengthAnnotation
The fraction portion of dosages strength determination for the Drug NER profile.
uima.tcas.Annotation
edu.mayo.bmi.uima.drugner.type.RangeStrengthAnnotation
The range portion of dosages stength determination for the Drug NER profile.
uima.tcas.Annotation
edu.mayo.bmi.uima.drugner.type.DecimalStrengthAnnotation
The decimal portion of dosages stength determination for the Drug NER profile.
uima.tcas.Annotation
edu.mayo.bmi.uima.drugner.type.DrugChangeStatusAnnotation
The change status of dosages determination for the Drug NER profile.
uima.tcas.Annotation
changeStatus
Indicates the drug change status of 'stop', 'start', 'increase', 'decrease', or 'noChange'.
uima.cas.String
edu.mayo.bmi.uima.drugner.type.DosagesAnnotation
The dosage determination for the Drug NER profile.
uima.tcas.Annotation
edu.mayo.bmi.uima.drugner.type.StrengthAnnotation
Holds the value representing the unit of the drug dosage.
uima.tcas.Annotation
edu.mayo.bmi.uima.drugner.type.StrengthUnitAnnotation
uima.tcas.Annotation
edu.mayo.bmi.uima.drugner.type.FrequencyUnitAnnotation
The value represents the unit portion of the drug frequency.
uima.tcas.Annotation
period
The periodic unit used, e.g day, month, hour, etc.
uima.cas.Float
edu.mayo.bmi.uima.drugner.type.FormAnnotation
The value represents the form portion of the drug mention.
uima.tcas.Annotation
edu.mayo.bmi.uima.drugner.type.SubSectionAnnotation
uima.tcas.Annotation
subSectionBodyBegin
Sub-section body begin offset.
uima.cas.Integer
subSectionBodyEnd
Sub-section body end offset.
uima.cas.Integer
status
Status of 'possible', 'history of', or 'family history of'.
uima.cas.Integer
subSectionHeaderBegin
Begin offset of subSection header
uima.cas.Integer
subSectionHeaderEnd
Ending offset of subsection header
uima.cas.Integer
parentSectionId
The section in which the subsection was found.
uima.cas.String
edu.mayo.bmi.uima.drugner.type.DrugMentionAnnotation
uima.tcas.Annotation
status
uima.cas.Integer
confidence
The confidence of the annotation.
uima.cas.Float
frequency
Frequency refers to how often the patient needs to take the drug. Frequency is divided into frequency number and frequency unit. E.g. twice daily
uima.cas.String
frequencyBegin
uima.cas.Integer
frequencyEnd
uima.cas.Integer
duration
Duration refers to for how long the patient is expected to take the drug. E.g. 'for 2 weeks'
Strongly encouraged to use bold text
uima.cas.String
durationBegin
uima.cas.Integer
durationEnd
uima.cas.Integer
route
Medication route refers to the way that a drug is introduced into the body. E.g oral
Strongly encouraged to use bold text
uima.cas.String
routeBegin
uima.cas.Integer
routeEnd
uima.cas.Integer
drugChangeStatus
Status refers to the whether the medication is currently being taken or not.
uima.cas.String
dosage
Dosage refers to how many of each drug the patient is taking. E.g. 5 mg
uima.cas.String
dosageBegin
uima.cas.Integer
dosageEnd
uima.cas.Integer
strength
uima.cas.String
strengthBegin
uima.cas.Integer
strengthEnd
uima.cas.Integer
strengthUnit
uima.cas.String
suBegin
uima.cas.Integer
suEnd
uima.cas.Integer
form
Form refers to the physical appearance of the drug. E.g. cream
uima.cas.String
formBegin
uima.cas.Integer
formEnd
uima.cas.Integer
frequencyUnit
uima.cas.String
fuBegin
uima.cas.Integer
fuEnd
uima.cas.Integer
startDate
uima.cas.String
reason
uima.cas.FSArray
changeStatusBegin
uima.cas.Integer
changeStatusEnd
uima.cas.Integer
edu.mayo.bmi.uima.drugner.type.ChunkAnnotation
uima.tcas.Annotation
sentenceID
uima.cas.String
edu.mayo.bmi.uima.lookup.type.DrugLookupWindowAnnotation
Similar to LookupWindowAnnotation however, these annotations are restricted to the segments/sections specified in the parameter - sectionOverrideSet - in DrugCNP2LookupWindow
uima.tcas.Annotation
edu.mayo.bmi.lookup.type.MetaHeader
uima.tcas.Annotation
rev_date
uima.cas.String
start_date
uima.cas.String