org.apache.uima.java
true
edu.mayo.bmi.uima.termspotter.ae.PADHitAnnotator
PAD_Hit
Uses PADTerm and PADLocation annotation to create a PADHit.
1.0
Mayo Clinic
DISTANCE
Specifies the number of annotations (of type specified in ANNOTATION_TYPE parameter) to define a text span that can contain the NEs that would comprise a hit
String
false
true
DISTANCE_ANN_TYPE
Specifies the annotation type that is used to define window(text span)
String
false
true
ANNOTATION_PART_ONE_OF_PAIR
Defines one of the annotations that make a pair to be considered as a hit - unless the dictionary hit is defined as standalone
String
false
true
ANNOTATION_PART_TWO_OF_PAIR
Defines one of the annotations that make a pair to be considered as a hit - unless the dictionary hit is defined as standalone
String
false
true
BOUNDARY_ANN_TYPE
Identifies the annotation type that defines boundary across which annotations cannot be paired. An example for boundary annotation type could be Segment.
String
false
true
BACKUP_BOUNDARY_ANN_TYPE
This annotation type should either be Segment annotatation, Document or any other enclosing annotation type that will be used in case the annotation specified in BOUNDARY_ANN_TYPE is not present, by default this uses segment annotation.
String
false
true
ANNOTATION_PART_ONE_FILTEROUT_NEGATED
Specifies whether the AE should filter out dictionary hits before considering for pairing. Default value is true - to filter out negated
Boolean
false
false
ANNOTATION_PART_TWO_FILTEROUT_NEGATED
Specifies whether the AE should filter out dictionary hits before considering for pairing. Default value is true - to filter out negated
Boolean
false
false
ANN_PART_ONE_TYPES_TO_IGNORE
type ids to be ignored from being considered
Integer
true
false
ANN_PART_TWO_TYPES_TO_IGNORE
type ids (as specified in the csv dictionary) to be ignored from bing marked as hits.
Integer
true
false
ANNOTATION_PART_ONE_OF_PAIR
edu.mayo.bmi.uima.pad.type.PADTerm
ANNOTATION_PART_TWO_OF_PAIR
edu.mayo.bmi.uima.pad.type.PADLocation
DISTANCE
2
DISTANCE_ANN_TYPE
edu.mayo.bmi.uima.core.type.textspan.Sentence
BOUNDARY_ANN_TYPE
edu.mayo.bmi.uima.pad.type.SubSection
BACKUP_BOUNDARY_ANN_TYPE
edu.mayo.bmi.uima.core.type.textspan.Segment
ANNOTATION_PART_ONE_FILTEROUT_NEGATED
false
ANNOTATION_PART_TWO_FILTEROUT_NEGATED
false
ANN_PART_ONE_TYPES_TO_IGNORE
ANN_PART_TWO_TYPES_TO_IGNORE
true
true
false
StopWordsFile
edu.mayo.bmi.uima.core.resource.FileResource
false
StopWordsFileResource
file:lookup/radiology/StopWords.txt
edu.mayo.bmi.uima.core.resource.FileResourceImpl
StopWordsFile
StopWordsFileResource