# Licensed to the Apache Software Foundation (ASF) under one or more # contributor license agreements. See the NOTICE file distributed with # this work for additional information regarding copyright ownership. # The ASF licenses this file to You under the Apache License, Version 2.0 # (the "License"); you may not use this file except in compliance with # the License. You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # #------------------------------------------------------------------------------ # R source file to validate ChiSquare distribution tests in # org.apache.commons.math.distribution.ChiSquareDistributionTest # # To run the test, install R, put this file and testFunctions # into the same directory, launch R from this directory and then enter # source("") # #----------------------------------------------------------------------------- tol <- 1E-9 # Function definitions source("testFunctions") # utility test functions # function to verify distribution computations verifyDistribution <- function(points, expected, df, tol) { rDistValues <- rep(0, length(points)) i <- 0 for (point in points) { i <- i + 1 rDistValues[i] <- pchisq(point, df, log = FALSE) } output <- c("Distribution test df = ", df) if (assertEquals(expected, rDistValues, tol, "Distribution Values")) { displayPadded(output, SUCCEEDED, WIDTH) } else { displayPadded(output, FAILED, WIDTH) } } # function to verify density computations verifyDensity <- function(points, expected, df, tol) { rDensityValues <- rep(0, length(points)) i <- 0 for (point in points) { i <- i + 1 rDensityValues[i] <- dchisq(point, df, log = FALSE) } output <- c("Density test df = ", df) if (assertEquals(expected, rDensityValues, tol, "Density Values")) { displayPadded(output, SUCCEEDED, WIDTH) } else { displayPadded(output, FAILED, WIDTH) } } # function to verify quantiles verifyQuantiles <- function(points, expected, df, tol) { rQuantileValues <- rep(0, length(points)) i <- 0 for (point in points) { i <- i + 1 rQuantileValues[i] <- qchisq(point, df, log = FALSE) } output <- c("Quantile test df = ", df) if (assertEquals(expected, rQuantileValues, tol, "Quantile Values")) { displayPadded(output, SUCCEEDED, WIDTH) } else { displayPadded(output, FAILED, WIDTH) } } #-------------------------------------------------------------------------- cat("ChiSquare Distribution test cases\n") df <- 5 distributionValues <- c(0.001, 0.01, 0.025, 0.05, 0.1, 0.999, 0.990, 0.975, 0.950, 0.900) densityValues <- c(0.0115379817652, 0.0415948507811, 0.0665060119842, 0.0919455953114, 0.121472591024, 0.000433630076361, 0.00412780610309, 0.00999340341045, 0.0193246438937, 0.0368460089216) distributionPoints <- c(0.210212602629, 0.554298076728, 0.831211613487, 1.14547622606, 1.61030798696, 20.5150056524, 15.0862724694, 12.8325019940, 11.0704976935, 9.23635689978) verifyQuantiles(distributionValues, distributionPoints, df, tol) verifyDistribution(distributionPoints, distributionValues, df, tol) verifyDensity(distributionPoints, densityValues, df, tol) df <- .1 distributionPoints <- c(1.16892641146e-60, 1.16892641146e-40, 1.06313237798e-32, 1.11477509638e-26, 1.16892641146e-20, 5.47291719746, 2.17525480018, 1.13434752351, 0.531864604852, 0.152634227818) verifyQuantiles(distributionValues, distributionPoints, df, tol) verifyDistribution(distributionPoints, distributionValues, df, tol) displayDashes(WIDTH)